Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 298 of 352
Found at i:97646966 original size:20 final size:19
Alignment explanation
Indices: 97646935--97646972 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
97646925 TATTTTATAC
97646935 TTTTAAATAATTTTAAAAT
1 TTTTAAATAATTTTAAAAT
97646954 TTTTAATATAATTTTAAAA
1 TTTTAA-ATAATTTTAAAA
97646973 AAAATTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAAATAATTTTAAAAT
Found at i:97647881 original size:14 final size:13
Alignment explanation
Indices: 97647859--97647901 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
97647849 AAAATAAAAA
97647859 AATTAATGTTTTT
1 AATTAATGTTTTT
97647872 AATGTAATGTTTGTT
1 AAT-TAATGTTT-TT
97647887 -ATT-ATGTTTTT
1 AATTAATGTTTTT
97647898 AATT
1 AATT
97647902 TAGTTTTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
11 2 0.07
12 9 0.33
13 4 0.15
14 10 0.37
15 2 0.07
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (13 bp):
AATTAATGTTTTT
Found at i:97648942 original size:30 final size:29
Alignment explanation
Indices: 97648895--97648964 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 29
97648885 TTGGGTCAGA
97648895 ACTAAAATTTTAAAATTTGAAAAA-TAT-GTG
1 ACTAAAA-TTTAAAATTT-AAAAAGTATAG-G
*
97648925 ACTAAAATTTACGAATTTAAAAAGTATAAGG
1 ACTAAAATTTA-AAATTTAAAAAGTAT-AGG
97648956 ACTAAAATT
1 ACTAAAATT
97648965 GATCAAATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
29 9 0.26
30 15 0.43
31 10 0.29
32 1 0.03
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (29 bp):
ACTAAAATTTAAAATTTAAAAAGTATAGG
Found at i:97651785 original size:15 final size:14
Alignment explanation
Indices: 97651759--97651845 Score: 63
Period size: 15 Copynumber: 6.0 Consensus size: 14
97651749 TATTCTAATA
*
97651759 CTATTATTATTTAT
1 CTATTTTTATTTAT
97651773 CTAATTTTTATTTAT
1 CT-ATTTTTATTTAT
* *
97651788 CTATTTATATTTCAA
1 CTATTTTTATTT-AT
*
97651803 CTATTATTATATT-T
1 CTATTTTTAT-TTAT
97651817 CTATTTATTATATT-T
1 CTATTT-TTAT-TTAT
97651832 CT-TTTTATATTTAT
1 CTATTTT-TATTTAT
97651846 ATACTAATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
13 3 0.05
14 23 0.38
15 32 0.53
16 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (14 bp):
CTATTTTTATTTAT
Found at i:97651808 original size:44 final size:44
Alignment explanation
Indices: 97651758--97651875 Score: 115
Period size: 44 Copynumber: 2.7 Consensus size: 44
97651748 TTATTCTAAT
97651758 ACTATTATTAT-TTATCTAATTT-TTAT-TTATCTATTTATATTTCA
1 ACTATTATTATATT-TCT-ATTTATTATATT-TCTATTTATATTTCA
* *
97651802 ACTATTATTATATTTCTATTTATTATATTTCTTTTTATATTTATA
1 ACTATTATTATATTTCTATTTATTATATTTCTATTTATATTT-CA
*
97651847 TACTAATATTAT-TTTC-A-TTATTAT-TTTCT
1 -ACTATTATTATATTTCTATTTATTATATTTCT
97651876 TATATATGTT
Statistics
Matches: 66, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
42 5 0.08
43 11 0.17
44 31 0.47
45 9 0.14
46 10 0.15
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (44 bp):
ACTATTATTATATTTCTATTTATTATATTTCTATTTATATTTCA
Found at i:97651824 original size:12 final size:14
Alignment explanation
Indices: 97651717--97651843 Score: 61
Period size: 15 Copynumber: 8.9 Consensus size: 14
97651707 TTATTGCTAG
*
97651717 TATTATTATGTTTC
1 TATTATTATATTTC
*
97651731 TATTTATGTTTATTT-
1 TA-TTAT-TATATTTC
* * * *
97651746 TGTTATTCTAATAC
1 TATTATTATATTTC
97651760 TATTATTAT-TTATC
1 TATTATTATATT-TC
*
97651774 TAATTTTTAT-TTATC
1 T-ATTATTATATT-TC
97651789 TA-T-TTATATTTCAAC
1 TATTATTATATTT---C
97651804 TATTATTATATTTC
1 TATTATTATATTTC
97651818 TATTTATTATATTTC
1 TA-TTATTATATTTC
97651833 T-TT-TTATATTT
1 TATTATTATATTT
97651844 ATATACTAAT
Statistics
Matches: 90, Mismatches: 11, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
12 13 0.14
13 10 0.11
14 19 0.21
15 34 0.38
16 6 0.07
17 8 0.09
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (14 bp):
TATTATTATATTTC
Found at i:97656366 original size:14 final size:16
Alignment explanation
Indices: 97656342--97656373 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
97656332 CGATTTGACA
97656342 AAAAGTTAAAA-AAAT
1 AAAAGTTAAAATAAAT
97656357 AAAA-TTAAAATAAAT
1 AAAAGTTAAAATAAAT
97656372 AA
1 AA
97656374 TAAAAATGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (16 bp):
AAAAGTTAAAATAAAT
Found at i:97657138 original size:7 final size:7
Alignment explanation
Indices: 97657128--97657154 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
97657118 CATTTATTTT
97657128 TTATAAA
1 TTATAAA
97657135 TTATAAA
1 TTATAAA
97657142 TTATAAA
1 TTATAAA
97657149 TTATAA
1 TTATAA
97657155 TATATAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
TTATAAA
Found at i:97657334 original size:17 final size:18
Alignment explanation
Indices: 97657312--97657345 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
97657302 AATGCTATTT
97657312 ACATTAT-ATTAATAAAC
1 ACATTATAATTAATAAAC
97657329 ACATTATAATTAATAAA
1 ACATTATAATTAATAAA
97657346 AATTATTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (18 bp):
ACATTATAATTAATAAAC
Found at i:97657430 original size:3 final size:3
Alignment explanation
Indices: 97657424--97657449 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
97657414 TACAACTTCT
97657424 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
97657450 TCTTTAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:97657460 original size:3 final size:3
Alignment explanation
Indices: 97657454--97657504 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
97657444 ATCATCTCTT
97657454 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
97657502 TAA
1 TAA
97657505 AAGAAAAAAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:97658320 original size:39 final size:42
Alignment explanation
Indices: 97658275--97658369 Score: 115
Period size: 45 Copynumber: 2.3 Consensus size: 42
97658265 GTGGGAATGA
*
97658275 TATTTCAAATA-T-T-TTTATATGTCAAATATTTCAATTAAT
1 TATTTCAAATATTATGTTTATATGTCAAATATTTCAAATAAT
* *
97658314 TGTTTCAAATATCATTATGTTTATATGTGAAATATTTCAAATAAT
1 TATTTC-AA-AT-ATTATGTTTATATGTCAAATATTTCAAATAAT
97658359 TATTTCAAATA
1 TATTTCAAATA
97658370 CAGATATAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
39 5 0.11
40 2 0.04
41 2 0.04
42 2 0.04
43 3 0.07
44 3 0.07
45 29 0.63
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.48
Consensus pattern (42 bp):
TATTTCAAATATTATGTTTATATGTCAAATATTTCAAATAAT
Found at i:97662037 original size:42 final size:44
Alignment explanation
Indices: 97661990--97662168 Score: 162
Period size: 42 Copynumber: 4.2 Consensus size: 44
97661980 CATCTTAGAA
*
97661990 GTTGGCATCGACTTATGATTTATGTGT-A-ACCACGTTTGGGAC
1 GTTGGCATCGACTTATGATTTACGTGTAAGACCACGTTTGGGAC
*
97662032 GTTGGCATCGACTTATGATTTACGTGTAAGACCATGTTTGGGAC
1 GTTGGCATCGACTTATGATTTACGTGTAAGACCACGTTTGGGAC
* * *
97662076 ATCGGCATCGTA-TT-TAATTT-CGTGTAAGACC-C-TATCTGGGAC
1 GTTGGCATCG-ACTTATGATTTACGTGTAAGACCACGT-T-TGGGAC
* ** *
97662118 AG-TGGCATCGA-TATTTGA-TTAAATGTAAGACCACGTCTGGGAC
1 -GTTGGCATCGACT-TATGATTTACGTGTAAGACCACGTTTGGGAC
97662161 GTTGGCAT
1 GTTGGCAT
97662169 TGTACAATTC
Statistics
Matches: 113, Mismatches: 12, Indels: 23
0.76 0.08 0.16
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 54 0.48
43 29 0.26
44 24 0.21
45 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (44 bp):
GTTGGCATCGACTTATGATTTACGTGTAAGACCACGTTTGGGAC
Found at i:97662157 original size:43 final size:42
Alignment explanation
Indices: 97662056--97662168 Score: 106
Period size: 43 Copynumber: 2.7 Consensus size: 42
97662046 ATGATTTACG
* * ***
97662056 TGTAAGACCATGTTTGGGACA-TCGGCATCGTATTTAATTTCG
1 TGTAAGACCACGTCTGGGACAGT-GGCATCGTATTTAATTAAA
* *
97662098 TGTAAGACC-CTATCTGGGACAGTGGCATCGATATTTGATTAAA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCG-TATTTAATTAAA
97662141 TGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTGGGACAG-TGGCAT
97662169 TGTACAATTC
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
42 25 0.43
43 32 0.55
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGTATTTAATTAAA
Found at i:97670844 original size:35 final size:35
Alignment explanation
Indices: 97670804--97670874 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
97670794 TCTAGGATCA
*
97670804 CATATCTTTGAAGATCCAC-TTCCATATTTGCCAAG
1 CATATCTTTAAAGAT-CACTTTCCATATTTGCCAAG
*
97670839 CATATCTTTAAAGATTACTTTCCATATTTGCCAAG
1 CATATCTTTAAAGATCACTTTCCATATTTGCCAAG
97670874 C
1 C
97670875 TCCGGAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 2 0.06
35 31 0.94
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.37
Consensus pattern (35 bp):
CATATCTTTAAAGATCACTTTCCATATTTGCCAAG
Found at i:97672925 original size:26 final size:26
Alignment explanation
Indices: 97672896--97672948 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
97672886 TTTACAGTTT
97672896 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
97672922 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
97672948 T
1 T
97672949 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:97688675 original size:21 final size:21
Alignment explanation
Indices: 97688651--97688698 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
97688641 TTTAATCATT
97688651 TAATTTTAAA-AAATTATAAAA
1 TAATTTTAAATAAATTA-AAAA
*
97688672 TAATTATTAAATTAATTAAAAA
1 TAATT-TTAAATAAATTAAAAA
97688694 -AATTT
1 TAATTT
97688699 ATTTAAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 9 0.38
22 9 0.38
23 5 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TAATTTTAAATAAATTAAAAA
Found at i:97689816 original size:8 final size:7
Alignment explanation
Indices: 97689802--97689861 Score: 50
Period size: 7 Copynumber: 8.3 Consensus size: 7
97689792 ATATCTTCTA
97689802 AATTTTT
1 AATTTTT
97689809 ATATTTTT
1 A-ATTTTT
*
97689817 AAAATTTT
1 -AATTTTT
*
97689825 AAATTTT
1 AATTTTT
**
97689832 AAAATTT
1 AATTTTT
97689839 AATTTTT
1 AATTTTT
97689846 ATATTTTT
1 A-ATTTTT
97689854 -ATTTTT
1 AATTTTT
97689860 AA
1 AA
97689862 GAATTTTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
6 6 0.13
7 21 0.47
8 17 0.38
9 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (7 bp):
AATTTTT
Found at i:97689845 original size:14 final size:14
Alignment explanation
Indices: 97689806--97689867 Score: 61
Period size: 14 Copynumber: 4.2 Consensus size: 14
97689796 CTTCTAAATT
97689806 TTTATATTTTTAAAA
1 TTTA-ATTTTTAAAA
*
97689821 TTTTAAATTTTAAAA
1 -TTTAATTTTTAAAA
* *
97689836 TTTAATTTTTATAT
1 TTTAATTTTTAAAA
*
97689850 TTTTATTTTTAAGAA
1 TTTAATTTTTAA-AA
97689865 TTT
1 TTT
97689868 TTTTTATATT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
14 21 0.55
15 13 0.34
16 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (14 bp):
TTTAATTTTTAAAA
Found at i:97689871 original size:19 final size:19
Alignment explanation
Indices: 97689849--97689886 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
97689839 AATTTTTATA
97689849 TTTTTAT-TTTTAAGAATTT
1 TTTTTATATTTTAA-AATTT
97689868 TTTTTATATTTTAAAATTT
1 TTTTTATATTTTAAAATTT
97689887 AAGTTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTATATTTTAAAATTT
Found at i:97689887 original size:27 final size:28
Alignment explanation
Indices: 97689810--97689889 Score: 92
Period size: 27 Copynumber: 2.9 Consensus size: 28
97689800 TAAATTTTTA
*
97689810 TATTTTTAAAATTTTAAATTTTAA-AATT
1 TATTTTT-ATATTTTAAATTTTAAGAATT
* *
97689838 TAATTTTTATATTTTTATTTTTAAGAATT
1 T-ATTTTTATATTTTAAATTTTAAGAATT
*
97689867 T-TTTTTATATTTTAAAATTTAAG
1 TATTTTTATATTTTAAATTTTAAG
97689890 TTTAAATATT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 19 0.43
28 14 0.32
29 11 0.25
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (28 bp):
TATTTTTATATTTTAAATTTTAAGAATT
Found at i:97689915 original size:48 final size:48
Alignment explanation
Indices: 97689821--97689926 Score: 133
Period size: 48 Copynumber: 2.2 Consensus size: 48
97689811 ATTTTTAAAA
** ** *
97689821 TTTTAAATTTTAAAATTTAATTTTTATATTTTTATTTTTAAGAATTTT
1 TTTTAAATTTTAAAATTTAATTTAAATATTAATATTGTTAAGAATTTT
*
97689869 TTTTATATTTTAAAATTTAAGTTTAAATATTAATATTGTTAA-AATTTT
1 TTTTAAATTTTAAAATTTAA-TTTAAATATTAATATTGTTAAGAATTTT
*
97689917 TATTAAATTT
1 TTTTAAATTT
97689927 GAGGGTGAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 33 0.67
49 16 0.33
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (48 bp):
TTTTAAATTTTAAAATTTAATTTAAATATTAATATTGTTAAGAATTTT
Found at i:97693362 original size:23 final size:20
Alignment explanation
Indices: 97693304--97693364 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 20
97693294 TAAAATTTCT
97693304 ATATAAAATAAATATAAAAA
1 ATATAAAATAAATATAAAAA
*
97693324 ATACAATACATCAAATATATTAAAA
1 ATATAA-A-AT-AAATATA--AAAA
97693349 ATATTAAAATAAATAT
1 ATA-TAAAATAAATAT
97693365 TTCTCGACAG
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
20 5 0.15
21 1 0.03
22 2 0.06
23 13 0.39
24 2 0.06
25 8 0.24
26 2 0.06
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
ATATAAAATAAATATAAAAA
Found at i:97693417 original size:12 final size:12
Alignment explanation
Indices: 97693400--97693426 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
97693390 AAATGTCTCT
97693400 AAAATAATAATA
1 AAAATAATAATA
97693412 AAAATAATAATA
1 AAAATAATAATA
97693424 AAA
1 AAA
97693427 TAAGAGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (12 bp):
AAAATAATAATA
Found at i:97696331 original size:18 final size:17
Alignment explanation
Indices: 97696310--97696343 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
97696300 AACAAAATAC
97696310 TTTAAGCAAAGCTAATGT
1 TTTAAGCAAAGC-AATGT
*
97696328 TTTAGGCAAAGCAATG
1 TTTAAGCAAAGCAATG
97696344 AATAAGACCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (17 bp):
TTTAAGCAAAGCAATGT
Found at i:97702213 original size:39 final size:40
Alignment explanation
Indices: 97702170--97702281 Score: 106
Period size: 38 Copynumber: 2.8 Consensus size: 40
97702160 TCGGATAATT
*
97702170 CGAAGTAATAGTTGACACCCAGTGTCTCATCG-GCCT-TGC
1 CGAAGTAATAGTTGACACCCAGTGTCTCATCGAACCTAT-C
** ** *
97702209 CGAAGTAA-AGTTGGTACCCAGTACCTCATCGAATCTATC
1 CGAAGTAATAGTTGACACCCAGTGTCTCATCGAACCTATC
*
97702248 CGAAGAAATA-TAGTGACACCCAGTGTCTCATCGA
1 CGAAGTAATAGT--TGACACCCAGTGTCTCATCGA
97702282 CTCGAGGTCG
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
38 19 0.33
39 19 0.33
40 2 0.04
41 17 0.30
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
CGAAGTAATAGTTGACACCCAGTGTCTCATCGAACCTATC
Found at i:97703850 original size:5 final size:5
Alignment explanation
Indices: 97703840--97703896 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
97703830 TTACTTATTT
* *
97703840 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
97703888 ATAT- ATATA
1 ATATA ATATA
97703897 TTTTAACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 7 0.16
7 4 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:97703856 original size:12 final size:12
Alignment explanation
Indices: 97703839--97703894 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
97703829 TTTACTTATT
97703839 TATATAATATAA
1 TATATAATATAA
97703851 TATATAATATAATA
1 TATATAATAT-A-A
97703865 TACTATAATATAA
1 TA-TATAATATAA
*
97703878 TA-ATAATTTAA
1 TATATAATATAA
97703889 TATATA
1 TATATA
97703895 TATTTTAACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:97703909 original size:26 final size:26
Alignment explanation
Indices: 97703841--97703896 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
97703831 TACTTATTTA
*
97703841 TATAATATAATATATAATATAATATAC
1 TATAATATAACA-ATAATATAATATAC
* *
97703868 TATAATATAATAATAATTTAATATA-
1 TATAATATAACAATAATATAATATAC
97703893 TATA
1 TATA
97703897 TTTTAACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 12 0.43
27 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TATAATATAACAATAATATAATATAC
Found at i:97706881 original size:90 final size:90
Alignment explanation
Indices: 97706714--97706887 Score: 224
Period size: 90 Copynumber: 1.9 Consensus size: 90
97706704 CCACATAGAA
* * * * * * *
97706714 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGTCTACATATCGATGCCATATCCTAGATAT
1 TGCCAAAGCCACGTCCCAAACATGGTCTTACAAGGGCCTACATATCGATGCCATATCCGAGACAT
*
97706779 GGCCTTATACGAAATCTCACATCGG
66 GGCCTTACACGAAATCTCACATCGG
* * *
97706804 TGCCAATGCCACGTCCCAAACATGGTCTTACAAGGGACCT-CATATCGATGTCATGTCCGAGACA
1 TGCCAAAGCCACGTCCCAAACATGGTCTTACAAGGG-CCTACATATCGATGCCATATCCGAGACA
*
97706868 TGGTCTTACACGAAATCTCA
65 TGGCCTTACACGAAATCTCA
97706888 TATCAACGCA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
90 69 0.97
91 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (90 bp):
TGCCAAAGCCACGTCCCAAACATGGTCTTACAAGGGCCTACATATCGATGCCATATCCGAGACAT
GGCCTTACACGAAATCTCACATCGG
Found at i:97706979 original size:48 final size:49
Alignment explanation
Indices: 97706898--97707020 Score: 124
Period size: 48 Copynumber: 2.6 Consensus size: 49
97706888 TATCAACGCA
* ** * * *
97706898 ATATCCCAGATATGGTCTCACA-TGAAATCACATACCGAGGCCGATGCC
1 ATATCCCAGATATGGTCTTACACTGGCATCACATACCAAGGCCGAAGAC
* * *
97706946 ATATCCCAGATATAGTCTTACACTGGCAT-ACATATCAATGCCGAAGAC
1 ATATCCCAGATATGGTCTTACACTGGCATCACATACCAAGGCCGAAGAC
* * *
97706994 ATGTCCCAGACATGGTCCTACACTGGC
1 ATATCCCAGATATGGTCTTACACTGGC
97707021 TATTGTGTCA
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
48 57 0.93
49 4 0.07
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (49 bp):
ATATCCCAGATATGGTCTTACACTGGCATCACATACCAAGGCCGAAGAC
Found at i:97721399 original size:15 final size:15
Alignment explanation
Indices: 97721379--97721432 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
97721369 TCGTTCAATA
97721379 TTTAAAAATATATAT
1 TTTAAAAATATATAT
97721394 TTTAAAAAT-TA-AT
1 TTTAAAAATATATAT
* *
97721407 CTTAAAATATAAATAT
1 TTTAAAA-ATATATAT
97721423 TTTAAAAATA
1 TTTAAAAATA
97721433 ATAAAATGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
13 8 0.24
14 4 0.12
15 13 0.39
16 8 0.24
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (15 bp):
TTTAAAAATATATAT
Found at i:97721429 original size:28 final size:28
Alignment explanation
Indices: 97721380--97721434 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
97721370 CGTTCAATAT
* *
97721380 TTAAAAATATATATTTTAAAAATTAATC
1 TTAAAAATAAATATTTTAAAAAATAATC
97721408 TTAAAATATAAATATTTT-AAAAATAAT
1 TTAAAA-ATAAATATTTTAAAAAATAAT
97721435 AAAATGTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 14 0.58
29 10 0.42
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (28 bp):
TTAAAAATAAATATTTTAAAAAATAATC
Found at i:97732128 original size:31 final size:31
Alignment explanation
Indices: 97732092--97732152 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
97732082 AAAGTGGAAA
97732092 AAATAAAGAAAAGTATGCATTAACATATAAT
1 AAATAAAGAAAAGTATGCATTAACATATAAT
97732123 AAATAAAGAAAAGTATGCATTAACATATAA
1 AAATAAAGAAAAGTATGCATTAACATATAA
97732153 CTTTTGCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.59, C:0.07, G:0.10, T:0.25
Consensus pattern (31 bp):
AAATAAAGAAAAGTATGCATTAACATATAAT
Found at i:97733109 original size:23 final size:22
Alignment explanation
Indices: 97733083--97733131 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
97733073 TTTGTTAATT
97733083 TAAAAG-TAATTTATTTAAAAATG
1 TAAAAGTTAA-TTATTTAAAAA-G
* *
97733106 TAAATGTTAATTATTTAACAAG
1 TAAAAGTTAATTATTTAAAAAG
97733128 TAAA
1 TAAA
97733132 TTTTAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 5 0.22
23 15 0.65
24 3 0.13
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (22 bp):
TAAAAGTTAATTATTTAAAAAG
Found at i:97733140 original size:23 final size:23
Alignment explanation
Indices: 97733093--97733137 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
97733083 TAAAAGTAAT
97733093 TTATTTAAAAATGTAAATGTTAA
1 TTATTTAAAAATGTAAATGTTAA
* *
97733116 TTATTTAACAA-GTAAATTTTAA
1 TTATTTAAAAATGTAAATGTTAA
97733138 ATTTTCATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (23 bp):
TTATTTAAAAATGTAAATGTTAA
Found at i:97742789 original size:24 final size:24
Alignment explanation
Indices: 97742762--97742813 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
97742752 AAGATGAGAG
97742762 TTTTCGAT-GATATTGGCTGAGGAA
1 TTTTC-ATAGATATTGGCTGAGGAA
* * *
97742786 TTTTCATAGTTTTTGGCTGAGGGA
1 TTTTCATAGATATTGGCTGAGGAA
97742810 TTTT
1 TTTT
97742814 GTTCGGGTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.19, C:0.08, G:0.27, T:0.46
Consensus pattern (24 bp):
TTTTCATAGATATTGGCTGAGGAA
Found at i:97747285 original size:23 final size:23
Alignment explanation
Indices: 97747246--97747293 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
97747236 AGCCCCATTT
97747246 AAAACCCAAGATGCAAAAACTAA
1 AAAACCCAAGATGCAAAAACTAA
* *
97747269 AAAAGCCCAA-ATTCAAAACCTAA
1 AAAA-CCCAAGATGCAAAAACTAA
97747292 AA
1 AA
97747294 TAAACCCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.60, C:0.23, G:0.06, T:0.10
Consensus pattern (23 bp):
AAAACCCAAGATGCAAAAACTAA
Found at i:97762105 original size:111 final size:111
Alignment explanation
Indices: 97761911--97762139 Score: 431
Period size: 111 Copynumber: 2.1 Consensus size: 111
97761901 AAATCATTTA
*
97761911 AAAGAGTAATGAATTGACTGATGTGATCTCTAAGAAGCTCACATTTGTTCATGCGAAACGGAAAT
1 AAAGAGTAATGAATTGACTGATGTGATCTCTAAGAAGCTCACATTCGTTCATGCGAAACGGAAAT
*
97761976 AGACGTTGTTTCAACACTAAACGGTTAGCTAAAGACTTAGTCGCAT
66 AGACATTGTTTCAACACTAAACGGTTAGCTAAAGACTTAGTCGCAT
*
97762022 AAAGAGTAATGAATTGACTGATGTGATCTCTAAGAAGCTCACATTCGTTCATGCGAAACGTAAAT
1 AAAGAGTAATGAATTGACTGATGTGATCTCTAAGAAGCTCACATTCGTTCATGCGAAACGGAAAT
97762087 AGACATTGTTTCAACACTAAACGGTTAGCTAAAGACTTAGTCGCAT
66 AGACATTGTTTCAACACTAAACGGTTAGCTAAAGACTTAGTCGCAT
97762133 AAAGAGT
1 AAAGAGT
97762140 TTCTAACCTT
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
111 115 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (111 bp):
AAAGAGTAATGAATTGACTGATGTGATCTCTAAGAAGCTCACATTCGTTCATGCGAAACGGAAAT
AGACATTGTTTCAACACTAAACGGTTAGCTAAAGACTTAGTCGCAT
Found at i:97767735 original size:27 final size:26
Alignment explanation
Indices: 97767695--97767860 Score: 215
Period size: 27 Copynumber: 6.2 Consensus size: 26
97767685 AGGAAGCGTC
*
97767695 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
97767722 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
97767749 CTGGTGGCTCTACCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
97767776 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
97767803 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
97767831 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
97767857 CTGG
1 CTGG
97767861 CAGCCATGCT
Statistics
Matches: 124, Mismatches: 10, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
26 9 0.07
27 96 0.77
28 19 0.15
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:97767777 original size:54 final size:54
Alignment explanation
Indices: 97767695--97767860 Score: 280
Period size: 54 Copynumber: 3.1 Consensus size: 54
97767685 AGGAAGCGTC
*
97767695 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
97767749 CTGGTGGCTCTACCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
97767803 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
97767857 CTGG
1 CTGG
97767861 CAGCCATGCT
Statistics
Matches: 106, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
54 88 0.83
55 18 0.17
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:97772359 original size:15 final size:15
Alignment explanation
Indices: 97772302--97772359 Score: 73
Period size: 15 Copynumber: 3.9 Consensus size: 15
97772292 TATATTAGAC
*
97772302 TTCTGTATCTTGGAT
1 TTCTTTATCTTGGAT
*
97772317 TTCTTCATCTTGGAT
1 TTCTTTATCTTGGAT
97772332 TT-TTCTATCTTGGAT
1 TTCTT-TATCTTGGAT
*
97772347 TTCTTTATTTTGG
1 TTCTTTATCTTGG
97772360 TTGTAACACT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.14, G:0.16, T:0.59
Consensus pattern (15 bp):
TTCTTTATCTTGGAT
Found at i:97778702 original size:42 final size:43
Alignment explanation
Indices: 97778609--97778702 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 43
97778599 CGTTGAGCAG
* *
97778609 TCCGAGTTCGTGATATATGTGAGAATCCAAACTTATTGAGTGG
1 TCCGAGTTCGTGATATATATGAGAATCCAAACTTATTGAGTGA
* * * * * *
97778652 TCCAAGTTCGTGATATGTATG-GAATTCGAGCTTGTTGAGTGA
1 TCCGAGTTCGTGATATATATGAGAATCCAAACTTATTGAGTGA
97778694 TCCGAGTTC
1 TCCGAGTTC
97778703 ATAATAGATG
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 24 0.57
43 18 0.43
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (43 bp):
TCCGAGTTCGTGATATATATGAGAATCCAAACTTATTGAGTGA
Found at i:97786047 original size:18 final size:18
Alignment explanation
Indices: 97786024--97786058 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97786014 ACATCCAACT
* *
97786024 AGGTTGATAGTGAAGAGG
1 AGGTTGAGAATGAAGAGG
97786042 AGGTTGAGAATGAAGAG
1 AGGTTGAGAATGAAGAG
97786059 AACAAAAAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (18 bp):
AGGTTGAGAATGAAGAGG
Found at i:97791660 original size:50 final size:49
Alignment explanation
Indices: 97791537--97791903 Score: 275
Period size: 50 Copynumber: 7.7 Consensus size: 49
97791527 TAGGGTGTAA
* * * *
97791537 TGCCGATTCCATGTCCCAGACATGGTCTTACACTGACTATCAAAAT-T-G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ACATCTCG
* * *
97791585 AGGCCGACGCCATGTCCCAGTCATGGTCTTACACTGGCTCTCACATCTCCG
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCT-CG
* *
97791636 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCACATCTCCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCT-CG
* *
97791686 TGCTGATGCCATGTCCCAGACATGGTCTTACACT-G---ACACATCTCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCG
* * *
97791731 TAGCTGACG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ACATCACG
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCG
* * * * * * **
97791777 AGACCGATG-CATGTCTCAGAAAT-GTCTTGCACTAGCTCT--CGTCTTAA
1 TG-CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATC-TCG
* * * ** *
97791824 TGCCAATGCCATGTCCCAAATATCATCTTACACTGGCTCTCACA-AT-G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCG
*
97791871 TGGTCGATG-CATGTCCCAGACAT-GTCTTACACT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
97791904 AGCACACAAA
Statistics
Matches: 258, Mismatches: 45, Indels: 33
0.77 0.13 0.10
Matches are distributed among these distances:
44 10 0.04
45 19 0.07
46 65 0.25
47 26 0.10
48 22 0.09
49 37 0.14
50 78 0.30
51 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (49 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCG
Found at i:97798158 original size:20 final size:21
Alignment explanation
Indices: 97798133--97798172 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97798123 CTCTTGAAAC
97798133 AGGGC-ACACGCCCATGTGGA
1 AGGGCAACACGCCCATGTGGA
*
97798153 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCATGTGG
97798173 TCGTTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.30, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:97798590 original size:28 final size:29
Alignment explanation
Indices: 97798536--97798590 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
97798526 TTTATGTGTA
*
97798536 GGGGACACACGGCCAGACAACATGCCCAT
1 GGGGACACACGGCCAGACAACACGCCCAT
*
97798565 GGGG-CACACTGCCTAGAC-ACACGCCC
1 GGGGACACACGGCC-AGACAACACGCCC
97798591 GTGTGTCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.27, C:0.38, G:0.27, T:0.07
Consensus pattern (29 bp):
GGGGACACACGGCCAGACAACACGCCCAT
Found at i:97799572 original size:46 final size:46
Alignment explanation
Indices: 97799371--97799728 Score: 272
Period size: 48 Copynumber: 7.6 Consensus size: 46
97799361 AGGTCGGCGC
* * *
97799371 CATGTCCCAAACATGGTCTTACACTGGCTCTCA-CATCTTTGTGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCA-C--AGTGCCGATG
* * *
97799420 CCATGTCCTAGACATGATCTTACACT-GACACGTCTAT-AC-GTGTCGATG
1 -CATGTCCCAGACATG-TCTTACACTAG-CTC-TC-ATCACAGTGCCGATG
* * * *
97799468 CCATGTCCCAGATATGGTCTTACACT-G-ACACAT-ATCA-TAGCCGACG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCA-CAGT-GCCGATG
* *
97799514 CATGTCCCAGACATGTCTTACACTGGCT-TACATCACGAG-GTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCAC-AGTGCCGATG
* * *
97799560 CATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAGTGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCACAGTGCCGATG
* * * *
97799606 CCATGTCCCAGACATGGTCTTACACTAACTCTCGTCTCAATGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCACAGTGCCGATG
97799654 CCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CA-ATGTGACCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCACA-GTG-CCGATG
97799702 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
97799729 ATACAAATGA
Statistics
Matches: 261, Mismatches: 26, Indels: 46
0.78 0.08 0.14
Matches are distributed among these distances:
44 13 0.05
45 19 0.07
46 66 0.25
47 33 0.13
48 99 0.38
49 3 0.01
50 23 0.09
51 3 0.01
52 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCACAGTGCCGATG
Found at i:97801131 original size:2 final size:2
Alignment explanation
Indices: 97801124--97801149 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
97801114 TATCATGATC
97801124 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
97801150 TATATGTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:97801887 original size:155 final size:155
Alignment explanation
Indices: 97801615--97802175 Score: 622
Period size: 155 Copynumber: 3.6 Consensus size: 155
97801605 ATCGGTATGA
* * * * * *
97801615 CCGAAGTAAAAATTGTGCCCAGTACTCTTCAAAACATAGTCGAATTATCCATTTGACACCCAGTG
1 CCGAAGTAAAAATTGTGCCCAGCACTCATCAACACGTAGTCGAAGTAACCATTTGACACCCAGTG
* * * * * **
97801680 CCTCATC-GAAACGTTCGAAGTAATTAGTTTGCACCTAGCGCTCATTGGTATAATTGGAGTAAAT
66 CCTCATCAG-AACGTCCGAAGTAATTAGTTTGCACCCATCGCTCATCGGTATAACTAAAGTAAAT
* * * *
97801744 GTTTTGCCCATCACCCATTGAAACGT
130 GTTGTGCCCAACACTCATCGAAACGT
* * * *
97801770 CCGAAGTAAAAATTGTGCCTAGCACTCATCAACACGTAGTTGAAGTAACTATTTGACACCTAGTG
1 CCGAAGTAAAAATTGTGCCCAGCACTCATCAACACGTAGTCGAAGTAACCATTTGACACCCAGTG
* * * ** * * * *
97801835 TCTCATCGGAATGTTTGAAGTAATTAGTTTGCACCCATCACTTATCGGTATAACCAAAGTTAATG
66 CCTCATCAGAACGTCCGAAGTAATTAGTTTGCACCCATCGCTCATCGGTATAACTAAAGTAAATG
* * *
97801900 TTGTGTCCAGCACTCATCGAAATGT
131 TTGTGCCCAACACTCATCGAAACGT
* * ** * *
97801925 CCGAAGTAAAAATTGTGCCCAGCACTCATCGACATGTAGTTTAAGTAACCATTTGGCATCCAGTG
1 CCGAAGTAAAAATTGTGCCCAGCACTCATCAACACGTAGTCGAAGTAACCATTTGACACCCAGTG
* * *
97801990 CCTCATCAGAACGTCTGAAGTAATTAGTTTGCGCCCAGT-GCTCATCGATATAACTAAAGTAAAT
66 CCTCATCAGAACGTCCGAAGTAATTAGTTTGCACCCA-TCGCTCATCGGTATAACTAAAGTAAAT
*
97802054 GTTGTGCCCAACACTCATCGGAACGT
130 GTTGTGCCCAACACTCATCGAAACGT
* * * * * * * * *
97802080 CTGAAGCAAAAATTTTTCCTAGTACTCATCGACACGTAGTCGAAGTAACCATTTGGCACCCAATG
1 CCGAAGTAAAAATTGTGCCCAGCACTCATCAACACGTAGTCGAAGTAACCATTTGACACCCAGTG
97802145 CCTCATCAGAACGTCCGAAGTAATTAGTTTG
66 CCTCATCAGAACGTCCGAAGTAATTAGTTTG
97802176 GGCCCAGCTC
Statistics
Matches: 341, Mismatches: 63, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
155 339 0.99
156 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (155 bp):
CCGAAGTAAAAATTGTGCCCAGCACTCATCAACACGTAGTCGAAGTAACCATTTGACACCCAGTG
CCTCATCAGAACGTCCGAAGTAATTAGTTTGCACCCATCGCTCATCGGTATAACTAAAGTAAATG
TTGTGCCCAACACTCATCGAAACGT
Found at i:97804073 original size:6 final size:6
Alignment explanation
Indices: 97804062--97804087 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
97804052 ATTTCTTTCT
97804062 TTCTTA TTCTTA TTCTTA TTCTTA TT
1 TTCTTA TTCTTA TTCTTA TTCTTA TT
97804088 ATATACATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (6 bp):
TTCTTA
Found at i:97809112 original size:31 final size:31
Alignment explanation
Indices: 97809077--97809139 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
97809067 CTCTGTCACC
*
97809077 TCATAAGGTCTAATAAAACGTGGACTTAATT
1 TCATAAGGTCCAATAAAACGTGGACTTAATT
97809108 TCATAAGGTCCAATAAAACGTGGACTTAATT
1 TCATAAGGTCCAATAAAACGTGGACTTAATT
97809139 T
1 T
97809140 TCCTTTCTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (31 bp):
TCATAAGGTCCAATAAAACGTGGACTTAATT
Found at i:97815019 original size:48 final size:48
Alignment explanation
Indices: 97814944--97815178 Score: 229
Period size: 48 Copynumber: 4.9 Consensus size: 48
97814934 GTAAATTACT
** *
97814944 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGCCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGCC
* * * * * * *
97814992 GATACCATGTCCCAGACATGGTCTTACATTGGCTCTCGTA-AAATGGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAA-GGCC
* * * * **
97815040 GATGCCATTTCCCAAACGTGGTCTTACACTAGCACACATATCAATACC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGCC
* * **
97815088 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGCC
* * * * *
97815136 GATGCCATGTCACAGACATGGCCTTACACTAGCACACATATCA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCA
97815179 CCCAAATGTC
Statistics
Matches: 145, Mismatches: 40, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
47 1 0.01
48 142 0.98
49 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAAGGCC
Found at i:97815108 original size:96 final size:96
Alignment explanation
Indices: 97814944--97815178 Score: 281
Period size: 96 Copynumber: 2.4 Consensus size: 96
97814934 GTAAATTACT
* * ** * * *
97814944 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGCCGAGGCCGATACCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAGACCGATACCATGTCCCAAAC
* * *
97815009 ATGGTCTTACATTGGCTCTCGTAAAATGGTC
66 ATGGTCTTACACTGGCTCTCATAAAATGGCC
* * * * *
97815040 GATGCCATTTCCCAAACGTGGTCTTACACTAGCACACATATCAATACCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAGACCGATACCATGTCCCAAAC
***
97815105 ATGGTCTTACACTGGCTCTCATATCGTGGCC
66 ATGGTCTTACACTGGCTCTCATAAAATGGCC
* * *
97815136 GATGCCATGTCACAGACATGGCCTTACACTAGCACACATATCA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCA
97815179 CCCAAATGTC
Statistics
Matches: 116, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
96 116 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAGACCGATACCATGTCCCAAAC
ATGGTCTTACACTGGCTCTCATAAAATGGCC
Found at i:97820305 original size:34 final size:34
Alignment explanation
Indices: 97820262--97820338 Score: 127
Period size: 34 Copynumber: 2.3 Consensus size: 34
97820252 TGTTACTGAA
97820262 TAATGCATACTGATACTGTGATGGGCTAAGGCCC
1 TAATGCATACTGATACTGTGATGGGCTAAGGCCC
* *
97820296 TAATGCATACTGATATTGTGATGGGGTAAGGCCC
1 TAATGCATACTGATACTGTGATGGGCTAAGGCCC
*
97820330 TACTGCATA
1 TAATGCATA
97820339 TTTGATATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (34 bp):
TAATGCATACTGATACTGTGATGGGCTAAGGCCC
Found at i:97839423 original size:19 final size:19
Alignment explanation
Indices: 97839399--97839437 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
97839389 ATATTGTGAT
*
97839399 TTCTTGTGGTATGTGTTAA
1 TTCTTGTGGTAGGTGTTAA
97839418 TTCTTGTGGTAGGTGTTAA
1 TTCTTGTGGTAGGTGTTAA
97839437 T
1 T
97839438 CAAGGGGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.15, C:0.05, G:0.28, T:0.51
Consensus pattern (19 bp):
TTCTTGTGGTAGGTGTTAA
Found at i:97843562 original size:20 final size:20
Alignment explanation
Indices: 97843539--97843576 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
97843529 AATGGTGATG
97843539 ATAAATTTAAAATAATTTCA
1 ATAAATTTAAAATAATTTCA
* *
97843559 ATAATTTTAAAATTATTT
1 ATAAATTTAAAATAATTT
97843577 GCTGACATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAAATTTAAAATAATTTCA
Found at i:97850375 original size:24 final size:24
Alignment explanation
Indices: 97850299--97850367 Score: 120
Period size: 24 Copynumber: 2.9 Consensus size: 24
97850289 CAGGCTATCA
* *
97850299 GGAGAAGATTTAGGAGCAGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
97850323 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
97850347 GGAGAGGATTTAGGAGCTGAT
1 GGAGAGGATTTAGGAGCTGAT
97850368 TACGGAGAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.35, C:0.04, G:0.41, T:0.20
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:97851844 original size:27 final size:27
Alignment explanation
Indices: 97851804--97851914 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 27
97851794 AGGAAGCGTC
* * * *
97851804 CTGGTGTCTATGCCATATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
97851831 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
97851858 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
97851885 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
97851911 CTGG
1 CTGG
97851915 CAGCCAAGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 13 0.17
27 62 0.83
ACGTcount: A:0.15, C:0.23, G:0.22, T:0.40
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:97857112 original size:11 final size:11
Alignment explanation
Indices: 97857093--97857123 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
97857083 CTATTTATGT
*
97857093 TTAAATTAGAA
1 TTAATTTAGAA
97857104 TTAATTTAGAA
1 TTAATTTAGAA
97857115 TTAATTTAG
1 TTAATTTAG
97857124 TGCTCGCCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (11 bp):
TTAATTTAGAA
Found at i:97868486 original size:43 final size:43
Alignment explanation
Indices: 97868394--97868507 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 43
97868384 TGTGATTACA
* *
97868394 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTAATGAGATTATG
* * *
97868437 TCTAAGACCATGTCTGGGACATTGGTATCGTTAAT-CGATT-TCG
1 TGTAAGACCATGTCTGGGACATTGGCATCG-TAATGAGATTAT-G
* * *
97868480 TGTAAGACCCTGTCTAGGACAGTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
97868508 TGATATGTGA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 1 0.02
43 55 0.93
44 3 0.05
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTAATGAGATTATG
Found at i:97871414 original size:29 final size:29
Alignment explanation
Indices: 97871382--97871441 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
97871372 AACAAATGTT
97871382 AAGTATGTTGAATTGTTATTAGTTTTCGA
1 AAGTATGTTGAATTGTTATTAGTTTTCGA
*
97871411 AAGTATGTTGAATTGTTATTAGTTTTTGA
1 AAGTATGTTGAATTGTTATTAGTTTTCGA
97871440 AA
1 AA
97871442 ATGTTCTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (29 bp):
AAGTATGTTGAATTGTTATTAGTTTTCGA
Found at i:97871567 original size:18 final size:18
Alignment explanation
Indices: 97871546--97871580 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
97871536 CAGATATAAT
97871546 AAAAGATTTGGAAATCCC
1 AAAAGATTTGGAAATCCC
*
97871564 AAAATATTTGGAAATCC
1 AAAAGATTTGGAAATCC
97871581 AAATTAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (18 bp):
AAAAGATTTGGAAATCCC
Found at i:97871834 original size:34 final size:34
Alignment explanation
Indices: 97871796--97871902 Score: 151
Period size: 34 Copynumber: 3.1 Consensus size: 34
97871786 GTTACAGTCT
* *
97871796 AGTATCAGTGCGGGCCTTAGCCTATTACAATAAC
1 AGTATCAGTGTGGGCCTTAGCCCATTACAATAAC
* **
97871830 AGTATCAGTATGGGAGTTAGCCCATTACAATAAC
1 AGTATCAGTGTGGGCCTTAGCCCATTACAATAAC
* *
97871864 AGTAACAGTGTGGGCTTTAGCCCATTACAATAAC
1 AGTATCAGTGTGGGCCTTAGCCCATTACAATAAC
97871898 AGTAT
1 AGTAT
97871903 GAAAAAATGC
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 63 1.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (34 bp):
AGTATCAGTGTGGGCCTTAGCCCATTACAATAAC
Found at i:97874751 original size:21 final size:21
Alignment explanation
Indices: 97874721--97874778 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
97874711 CTCACAAAGA
* *
97874721 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
*
97874741 AAAAAGAGAAGCAACTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
97874762 AAAAAGAGAAGTAACTT
1 AAAAAGAGAAGTAACTT
97874779 GGACCCTCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
20 6 0.18
21 27 0.82
ACGTcount: A:0.55, C:0.09, G:0.22, T:0.14
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:97877181 original size:12 final size:12
Alignment explanation
Indices: 97877164--97877189 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97877154 TTGCTTCTTC
97877164 TTCTTTTTTTTT
1 TTCTTTTTTTTT
97877176 TTCTTTTTTTTT
1 TTCTTTTTTTTT
97877188 TT
1 TT
97877190 AGTGTTGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:97877185 original size:15 final size:15
Alignment explanation
Indices: 97877161--97877189 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
97877151 TCTTTGCTTC
97877161 TTCTTCTTTTTTTTT
1 TTCTTCTTTTTTTTT
97877176 TTCTT-TTTTTTTTT
1 TTCTTCTTTTTTTTT
97877190 AGTGTTGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTCTTCTTTTTTTTT
Found at i:97877924 original size:170 final size:172
Alignment explanation
Indices: 97877618--97877928 Score: 385
Period size: 170 Copynumber: 1.8 Consensus size: 172
97877608 CTTTTAGCTG
* *
97877618 TGTCACAGTTTATGGATCATAGTGATGGTTATAATTATTGATGATGTGGTATACTGCTTAGATAT
1 TGTCACAGTTTATGGATCATAGTCATGGTTATAATTATTGATGATCTGGTATACTGCTTAGATAT
* ** * * * *
97877683 TCCGCGTTAATTTATGTTACCCGGACTTGAGGATGACTGCATATCATTGTCCGGGTATGTGCCGT
66 GCCGCGTTAATCAATGTTACCCGGACTTGAGGATGACTGCATATCATTATCCAGATATGTGCCGC
97877748 ACATAGGTGTTGGACACAGGTTTAGGAAAAACAAAGAATCTA
131 ACATAGGTGTTGGACACAGGTTTAGGAAAAACAAAGAATCTA
* * * * *
97877790 TGTCACATTTTATGGATCATGGTCATGGTTTTCATTATTGATGATCT-G-ATATTGCTTAGATAT
1 TGTCACAGTTTATGGATCATAGTCATGGTTATAATTATTGATGATCTGGTATACTGCTTAGATAT
* ** * * * * **
97877853 GCTGTTTTAATCAATGTTACTCGGACTTGAGGATGAGTTCATATCCA-TATCTAGATATGTGTTG
66 GCCGCGTTAATCAATGTTACCCGGACTTGAGGATGACTGCATAT-CATTATCCAGATATGTGCCG
97877917 CACATAGGTGTT
130 CACATAGGTGTT
97877929 AGCCATGGGT
Statistics
Matches: 115, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
170 71 0.62
171 3 0.03
172 41 0.36
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (172 bp):
TGTCACAGTTTATGGATCATAGTCATGGTTATAATTATTGATGATCTGGTATACTGCTTAGATAT
GCCGCGTTAATCAATGTTACCCGGACTTGAGGATGACTGCATATCATTATCCAGATATGTGCCGC
ACATAGGTGTTGGACACAGGTTTAGGAAAAACAAAGAATCTA
Found at i:97880045 original size:21 final size:21
Alignment explanation
Indices: 97880006--97880045 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
97879996 GGTCGACGAA
* *
97880006 AACGACGACGTCCTTAACGTT
1 AACGAAGACGTCCTGAACGTT
*
97880027 AACGAAGACGTTCTGAACG
1 AACGAAGACGTCCTGAACG
97880046 ATGAAGACGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.20
Consensus pattern (21 bp):
AACGAAGACGTCCTGAACGTT
Found at i:97887911 original size:34 final size:34
Alignment explanation
Indices: 97887868--97887935 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
97887858 AAGAGCGTAA
97887868 AGCTAATTCAGTGCAGATAATGATATCACTTGGT
1 AGCTAATTCAGTGCAGATAATGATATCACTTGGT
97887902 AGCTAATTCAGTGCAGATAATGATATCACTTGGT
1 AGCTAATTCAGTGCAGATAATGATATCACTTGGT
97887936 TCAGATCAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (34 bp):
AGCTAATTCAGTGCAGATAATGATATCACTTGGT
Found at i:97892634 original size:22 final size:21
Alignment explanation
Indices: 97892592--97892634 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
97892582 TTCAATTAAA
* *
97892592 ATTTTATTTTATTTTTTATAC
1 ATTTTATTTTATTATTCATAC
97892613 ATTTTAATTTTATTATTCATAC
1 ATTTT-ATTTTATTATTCATAC
97892635 TTTATCATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTTTATTTTATTATTCATAC
Found at i:97893351 original size:52 final size:52
Alignment explanation
Indices: 97893289--97893387 Score: 180
Period size: 52 Copynumber: 1.9 Consensus size: 52
97893279 TATCAAAAAA
*
97893289 TTTCTATTAAATTGGATTATTTTTCATACTTAAAATAAAAAATTTGTTCATG
1 TTTCTATTAAATTGGATTATTTTTCATACTCAAAATAAAAAATTTGTTCATG
*
97893341 TTTCTATTAAATTGGATTGTTTTTCATACTCAAAATAAAAAATTTGT
1 TTTCTATTAAATTGGATTATTTTTCATACTCAAAATAAAAAATTTGT
97893388 CCATCTGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.47
Consensus pattern (52 bp):
TTTCTATTAAATTGGATTATTTTTCATACTCAAAATAAAAAATTTGTTCATG
Found at i:97899083 original size:54 final size:53
Alignment explanation
Indices: 97899001--97899138 Score: 215
Period size: 54 Copynumber: 2.5 Consensus size: 53
97898991 TGTTTGTTAT
*
97899001 TATAAAGGATTTAGCCTGGACTGGTAATCCCAACATCACCTTATGAGTTCATGA
1 TATAAGGGATTTAGCCTGGACT-GTAATCCCAACATCACCTTATGAGTTCATGA
*
97899055 TATAAGGGATTTAGCCTGGACTAGTAATCCCGACATCACCTTATGAGTTCATGA
1 TATAAGGGATTTAGCCTGGACT-GTAATCCCAACATCACCTTATGAGTTCATGA
97899109 TAT-AGAGGATTTAGCCTGGACTGATAATCC
1 TATAAG-GGATTTAGCCTGGACTG-TAATCC
97899139 TGCCATGAGA
Statistics
Matches: 79, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
53 3 0.04
54 76 0.96
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (53 bp):
TATAAGGGATTTAGCCTGGACTGTAATCCCAACATCACCTTATGAGTTCATGA
Found at i:97900541 original size:38 final size:37
Alignment explanation
Indices: 97900497--97900597 Score: 95
Period size: 38 Copynumber: 2.7 Consensus size: 37
97900487 TAATTATGTA
97900497 AATATATATAATTTAATTATTAATTACTT-TTTTATTT
1 AATATATATAATTTAATTATTAATTA-TTATTTTATTT
* * *
97900534 AAGTATATAGATATTT-ATTATTTATTATTATTCTA-TT
1 AA-TATATATA-ATTTAATTATTAATTATTATTTTATTT
97900571 AA-AT-TATAATTTATATTATTAAATTAT
1 AATATATATAATTTA-ATTATT-AATTAT
97900598 GATTATTTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
33 4 0.08
34 3 0.06
35 8 0.15
36 5 0.09
37 8 0.15
38 21 0.40
39 4 0.08
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (37 bp):
AATATATATAATTTAATTATTAATTATTATTTTATTT
Found at i:97900590 original size:20 final size:22
Alignment explanation
Indices: 97900567--97900616 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
97900557 ATTATTATTC
97900567 TATTAAATTAT-A-ATTTATAT
1 TATTAAATTATGATATTTATAT
97900587 TATTAAATTATGATTATTTATAT
1 TATTAAATTATGA-TATTTATAT
97900610 TATTAAA
1 TATTAAA
97900617 AATAAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.41
21 1 0.04
23 15 0.56
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TATTAAATTATGATATTTATAT
Found at i:97900625 original size:23 final size:23
Alignment explanation
Indices: 97900579--97900621 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
97900569 TTAAATTATA
* *
97900579 ATTTATATTATTAAATTATGATT
1 ATTTATATTATTAAAATATAATT
97900602 ATTTATATTATTAAAA-ATAA
1 ATTTATATTATTAAAATATAA
97900622 ATTAAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
ATTTATATTATTAAAATATAATT
Found at i:97900923 original size:13 final size:14
Alignment explanation
Indices: 97900905--97900943 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
97900895 TTATAAAGTT
97900905 AATAAAATAAAAG-
1 AATAAAATAAAAGA
* *
97900918 AATAAAAGAAATGA
1 AATAAAATAAAAGA
97900932 AATAAAATAAAA
1 AATAAAATAAAA
97900944 TAAAGAAGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (14 bp):
AATAAAATAAAAGA
Found at i:97901994 original size:6 final size:6
Alignment explanation
Indices: 97901983--97902011 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
97901973 TGCCGACTAT
97901983 TGTTAC TGTTAC TGTTAC -GTTAC TGTTAC
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC
97902012 CGATTCGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.48
Consensus pattern (6 bp):
TGTTAC
Found at i:97902006 original size:11 final size:12
Alignment explanation
Indices: 97901983--97902011 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
97901973 TGCCGACTAT
97901983 TGTTACTGTTAC
1 TGTTACTGTTAC
97901995 TGTTAC-GTTAC
1 TGTTACTGTTAC
97902006 TGTTAC
1 TGTTAC
97902012 CGATTCGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.48
Consensus pattern (12 bp):
TGTTACTGTTAC
Found at i:97902053 original size:45 final size:45
Alignment explanation
Indices: 97901992--97902101 Score: 152
Period size: 45 Copynumber: 2.5 Consensus size: 45
97901982 TTGTTACTGT
*
97901992 TACTGTTA-CGTTACTGTTACCGATTC-GACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTACAGATTCAG-CACTTTGTGTGTCGAA
* *
97902036 TACTGTTACCGTTACTGTTACAGATTCAGCATTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
* *
97902081 TACTGTTACTGTTATTGTTAC
1 TACTGTTACCGTTACTGTTAC
97902102 TGCTACTGCT
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
44 8 0.14
45 50 0.85
46 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
Found at i:97903794 original size:22 final size:22
Alignment explanation
Indices: 97903766--97903814 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
97903756 GCTTTTGAAT
*
97903766 AACTCAACGTAGCCTTATGTTC
1 AACTCAAAGTAGCCTTATGTTC
97903788 AACTCAAAGTAGCCTTATGTTC
1 AACTCAAAGTAGCCTTATGTTC
97903810 AACTC
1 AACTC
97903815 CTATTTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (22 bp):
AACTCAAAGTAGCCTTATGTTC
Found at i:97906543 original size:51 final size:51
Alignment explanation
Indices: 97906488--97906587 Score: 128
Period size: 51 Copynumber: 2.0 Consensus size: 51
97906478 CTACCTTATA
* * *
97906488 ACATGTAACACATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGTT
1 ACATGTAACACATCCATAATGAACTCGAACCACTCAACGAGCTCGGATGTT
* * * * *
97906539 ACATGTATCGCATCCATTATGAACTCGAACCACTGAATGAGCTCGGATG
1 ACATGTAACACATCCATAATGAACTCGAACCACTCAACGAGCTCGGATG
97906588 CCATATATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (51 bp):
ACATGTAACACATCCATAATGAACTCGAACCACTCAACGAGCTCGGATGTT
Found at i:97908951 original size:7 final size:7
Alignment explanation
Indices: 97908939--97908982 Score: 65
Period size: 7 Copynumber: 6.4 Consensus size: 7
97908929 TTCATTTTTC
97908939 TTTATAT
1 TTTATAT
97908946 TTTATAT
1 TTTATAT
97908953 TTTATAT
1 TTTATAT
97908960 TTTATAT
1 TTTATAT
97908967 TTTA-AT
1 TTTATAT
97908973 TATTAT-T
1 T-TTATAT
97908980 TTT
1 TTT
97908983 TCCATTAGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
6 5 0.14
7 30 0.86
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATAT
Found at i:97910856 original size:29 final size:30
Alignment explanation
Indices: 97910819--97910893 Score: 73
Period size: 29 Copynumber: 2.5 Consensus size: 30
97910809 TTTAGATTCG
* *
97910819 AAAAATAAAAAGAGTAAATTCCTAAA-A-AT
1 AAAAGTAAAAAGACTAAATT-CTAAATATAT
**
97910848 AAAAGTAAATGGACTAAATTCTAAATATAT
1 AAAAGTAAAAAGACTAAATTCTAAATATAT
*
97910878 AAAGAGTACAAAGACT
1 AAA-AGTAAAAAGACT
97910894 TGAAGCATGT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
28 5 0.14
29 17 0.47
30 5 0.14
31 9 0.25
ACGTcount: A:0.59, C:0.08, G:0.11, T:0.23
Consensus pattern (30 bp):
AAAAGTAAAAAGACTAAATTCTAAATATAT
Found at i:97952404 original size:39 final size:40
Alignment explanation
Indices: 97952251--97952471 Score: 253
Period size: 39 Copynumber: 5.7 Consensus size: 40
97952241 TTGAATGATG
* * *
97952251 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
97952290 ATCCGGACTAAGAT-CCGAAGGCATTTG-GCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
97952330 TCCGGGCTAAG-CCCGAA-GCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
97952368 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
97952407 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
97952445 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
97952472 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 13, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
37 7 0.04
38 36 0.23
39 76 0.48
40 35 0.22
41 5 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:97952502 original size:78 final size:79
Alignment explanation
Indices: 97952304--97952504 Score: 209
Period size: 78 Copynumber: 2.6 Consensus size: 79
97952294 GGACTAAGAT
* * * * *
97952304 CCGAAGGCATTTG-GCGAGATACTAATTCCGGGCT-AAGCCCGAA-GCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
97952366 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** * *
97952380 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
97952443 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
97952459 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
97952505 TACGTGATTT
Statistics
Matches: 106, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
76 13 0.12
77 20 0.19
78 45 0.42
79 28 0.26
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:97960468 original size:79 final size:81
Alignment explanation
Indices: 97960332--97960516 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
97960322 TTGAATGATG
* *
97960332 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
97960396 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
97960411 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
97960473 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
97960491 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
97960517 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:97960530 original size:40 final size:40
Alignment explanation
Indices: 97960333--97960516 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
97960323 TGAATGATGT
* * * *
97960333 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
97960373 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
97960413 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
97960451 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
97960492 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
97960517 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:97960538 original size:79 final size:79
Alignment explanation
Indices: 97960385--97960549 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
97960375 GGACTAAGAT
* * **
97960385 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
97960450 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
97960464 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
97960527 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
97960543 CCGAAGG
1 CCGAAGG
97960550 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:97964896 original size:43 final size:43
Alignment explanation
Indices: 97964806--97964897 Score: 132
Period size: 43 Copynumber: 2.1 Consensus size: 43
97964796 CCTAATTGGG
* * *
97964806 AAAATAGTTCCCTTATTTTAATAAACTACTAAAACATGAAAAG
1 AAAATAGTTCCCTTATTCTAATAAACTACTAAAAAATGAAAAA
*
97964849 AAAATAGTTCCCTTATTCTAGTAAACTACTAAAAAAT-AAAATA
1 AAAATAGTTCCCTTATTCTAATAAACTACTAAAAAATGAAAA-A
97964892 AAAATA
1 AAAATA
97964898 TTTCTAGAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 4 0.09
43 40 0.91
ACGTcount: A:0.52, C:0.13, G:0.05, T:0.29
Consensus pattern (43 bp):
AAAATAGTTCCCTTATTCTAATAAACTACTAAAAAATGAAAAA
Found at i:97965394 original size:12 final size:12
Alignment explanation
Indices: 97965377--97965408 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
97965367 GGTACCTCCA
*
97965377 TCTCTTTTTTCT
1 TCTCTTCTTTCT
97965389 TCTCTTCTTTCT
1 TCTCTTCTTTCT
97965401 TCTCTTCT
1 TCTCTTCT
97965409 CTGGTTAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (12 bp):
TCTCTTCTTTCT
Found at i:97967132 original size:22 final size:21
Alignment explanation
Indices: 97967119--97967160 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
97967109 TTTAATTTAA
97967119 TATTTAATAATTTTATATATTT
1 TATTTAATAATTTT-TATATTT
*
97967141 TATTTATTAATATTTTATAT
1 TATTTAATAAT-TTTTATAT
97967161 ATAACCATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TATTTAATAATTTTTATATTT
Found at i:97968238 original size:12 final size:12
Alignment explanation
Indices: 97968218--97968260 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
97968208 ACATTAACAA
*
97968218 TAAATAATAAAT
1 TAAAAAATAAAT
97968230 TAAAAAATAAAT
1 TAAAAAATAAAT
* *
97968242 T-AAATATAATT
1 TAAAAAATAAAT
97968253 TAAAAAAT
1 TAAAAAAT
97968261 TCATAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAAAAATAAAT
Found at i:97968269 original size:23 final size:24
Alignment explanation
Indices: 97968219--97968269 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 24
97968209 CATTAACAAT
*
97968219 AAATAATAAATTAAAAAATAAATT
1 AAATAATAAATTAAAAAATAAATA
* **
97968243 AAAT-ATAATTTAAAAAATTCATA
1 AAATAATAAATTAAAAAATAAATA
97968266 AAAT
1 AAAT
97968270 TTACTAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (24 bp):
AAATAATAAATTAAAAAATAAATA
Found at i:97976309 original size:2 final size:2
Alignment explanation
Indices: 97976302--97976345 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
97976292 AATTGCCACA
97976302 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97976344 AT
1 AT
97976346 GCACATAGTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97980176 original size:43 final size:43
Alignment explanation
Indices: 97980110--97980195 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
97980100 TATGTTATTG
*
97980110 ATATTGAAATGAAAAAGAAGAGAAATGAATATGAGATGAGAAA
1 ATATTGAAATGAAAAAGAAGAGAAATGAATATGAGAAGAGAAA
* * * *
97980153 ATATTGAAATGGAAAATATGAGAAATGATTATGAGAAGAGAAA
1 ATATTGAAATGAAAAAGAAGAGAAATGAATATGAGAAGAGAAA
97980196 TGAGATATGA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.56, C:0.00, G:0.23, T:0.21
Consensus pattern (43 bp):
ATATTGAAATGAAAAAGAAGAGAAATGAATATGAGAAGAGAAA
Found at i:97980179 original size:16 final size:17
Alignment explanation
Indices: 97980137--97980180 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
97980127 AAGAGAAATG
97980137 AATATGAG--ATGAGAA
1 AATATGAGAAATGAGAA
*
97980152 AATAT-TGAAATG-GAA
1 AATATGAGAAATGAGAA
97980167 AATATGAGAAATGA
1 AATATGAGAAATGA
97980181 TTATGAGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
14 1 0.04
15 13 0.57
16 9 0.39
ACGTcount: A:0.55, C:0.00, G:0.23, T:0.23
Consensus pattern (17 bp):
AATATGAGAAATGAGAA
Found at i:97981586 original size:49 final size:49
Alignment explanation
Indices: 97981524--97981628 Score: 142
Period size: 49 Copynumber: 2.2 Consensus size: 49
97981514 TCTGACATTC
* * *
97981524 TAGAAA-GGATAAATAG-GAATAATAGCGTAGACAGTGGAAGACTAAGTT
1 TAGAAATGTATAAATAGTG-ATAAGAGCGTAGACAGTGGAAGACCAAGTT
* *
97981572 TAGCAATGTATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTT
1 TAGAAATGTATAAATAGTGATAAGAGCGTAGACAGTGGAAGACCAAGTT
97981621 TAGAAATG
1 TAGAAATG
97981629 CAAAGCATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
48 5 0.10
49 43 0.88
50 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.27, T:0.23
Consensus pattern (49 bp):
TAGAAATGTATAAATAGTGATAAGAGCGTAGACAGTGGAAGACCAAGTT
Found at i:97982457 original size:22 final size:22
Alignment explanation
Indices: 97982432--97982480 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
97982422 TTTTGTTATT
* *
97982432 ATTTTACTGTTTTTTTACTACC
1 ATTTTACTGTTGTGTTACTACC
** *
97982454 ATTTCGCTGTTGTGTTACTACT
1 ATTTTACTGTTGTGTTACTACC
97982476 ATTTT
1 ATTTT
97982481 GTTATTATAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.16, G:0.10, T:0.57
Consensus pattern (22 bp):
ATTTTACTGTTGTGTTACTACC
Found at i:97983748 original size:27 final size:27
Alignment explanation
Indices: 97983718--97983861 Score: 180
Period size: 27 Copynumber: 5.3 Consensus size: 27
97983708 TATTGAAATG
**
97983718 CCCTCGATTTGTAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
** *
97983745 CCCTCGATTTACAGAATTAATGTTTCA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
97983772 CCCTCAATTTACAGAAATACCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* *
97983799 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
* * *
97983826 CCCTCAATTTACAAAATTATCGTTTTA
1 CCCTCGATTTACAGAATTACCGTTTTA
97983853 CCCTCGATT
1 CCCTCGATT
97983862 GTGAAATTAC
Statistics
Matches: 97, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCGTTTTA
Found at i:97983923 original size:27 final size:27
Alignment explanation
Indices: 97983893--97984101 Score: 127
Period size: 27 Copynumber: 7.7 Consensus size: 27
97983883 TGTAGGATAG
*
97983893 AATTACCAAAATACCTTTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
97983920 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTAGTTTGTAA
**** * *
97983947 AATTATTGCAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* **
97983974 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCTTAG-TTTGTAA
* * *
97984001 AATTA-CAGAAATACCATTGACTTTCTAAA
1 AATTACCA-AAATACCCTT-AGTTTGT-AA
** * * *
97984030 AATTATAAAAATACCATTGGTTTATAA
1 AATTACCAAAATACCCTTAGTTTGTAA
** *
97984057 AATTACTGAAATACCCTTAGTTTGTAG
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
97984084 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
97984102 GTAGGATGAA
Statistics
Matches: 134, Mismatches: 40, Indels: 16
0.71 0.21 0.08
Matches are distributed among these distances:
26 3 0.02
27 106 0.79
28 7 0.05
29 17 0.13
30 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:97983951 original size:54 final size:54
Alignment explanation
Indices: 97983893--97984094 Score: 172
Period size: 54 Copynumber: 3.7 Consensus size: 54
97983883 TGTAGGATAG
* * *
97983893 AATTACCAAAATACCTTTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTATAA
**** * * * * *
97983947 AATTATTGCAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTATAA
* * * ** *
97984001 AATTA-CAGAAATACCATTGACTTTCTAAAAATTATAAAAATACCATTGGTTTATAA
1 AATTACCA-AAATACCCTT-AGTTTGT-AAAATTACCAAAATACCACTGGTTTATAA
** * *
97984057 AATTACTGAAATACCCTTAGTTTGTAGATTTACCAAAA
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
97984095 CACCCTTGTA
Statistics
Matches: 110, Mismatches: 34, Indels: 8
0.72 0.22 0.05
Matches are distributed among these distances:
54 63 0.57
55 10 0.09
56 37 0.34
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (54 bp):
AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTATAA
Found at i:97984171 original size:27 final size:27
Alignment explanation
Indices: 97984096--97984197 Score: 73
Period size: 27 Copynumber: 3.8 Consensus size: 27
97984086 TTACCAAAAC
* * * * *
97984096 ACCCTTGTAGGATGAAATGACTAAAAT
1 ACCCCTGTAGGGTAAAATGACCATAAT
* * *
97984123 ACCCCTAATA-GGTAAAAAGACCGTAA-
1 ACCCCT-GTAGGGTAAAATGACCATAAT
*
97984149 AGCCCCTGTAGGGTAAAGTGACCATAAT
1 A-CCCCTGTAGGGTAAAATGACCATAAT
* *
97984177 ACCCTTGTATGGTAAAATGAC
1 ACCCCTGTAGGGTAAAATGAC
97984198 GAATATGCCC
Statistics
Matches: 56, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
26 3 0.05
27 50 0.89
28 3 0.05
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
ACCCCTGTAGGGTAAAATGACCATAAT
Found at i:97984915 original size:20 final size:20
Alignment explanation
Indices: 97984890--97984956 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
97984880 GATATGATAT
*
97984890 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
97984910 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
97984930 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
97984950 ACATGAT
1 ACATGAT
97984957 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:97985035 original size:26 final size:26
Alignment explanation
Indices: 97985006--97985180 Score: 246
Period size: 26 Copynumber: 6.8 Consensus size: 26
97984996 GAGGAAGTGC
*
97985006 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
97985032 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
97985058 AAAATGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
97985084 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
97985110 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
97985136 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
97985161 AAGAGGACTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
97985181 ATTAAAGAGG
Statistics
Matches: 134, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 31 0.23
26 103 0.77
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:97985089 original size:52 final size:52
Alignment explanation
Indices: 97985006--97985180 Score: 300
Period size: 52 Copynumber: 3.4 Consensus size: 52
97984996 GAGGAAGTGC
*
97985006 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
97985058 AAAATGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
97985110 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* *
97985161 AAGAGGACTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
97985181 ATTAAAGAGG
Statistics
Matches: 118, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
50 10 0.08
51 23 0.19
52 85 0.72
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:97985443 original size:31 final size:31
Alignment explanation
Indices: 97985398--97985536 Score: 206
Period size: 31 Copynumber: 4.5 Consensus size: 31
97985388 CGTTTACAGT
*
97985398 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
* * * *
97985429 AAACGCTTCGGCCCAGTGAAATTATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
* *
97985460 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
97985491 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
97985522 AAAGGCTTTGGCCCA
1 AAAGGCTTCGGCCCA
97985537 GTAACCGTTA
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 96 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:97990161 original size:25 final size:27
Alignment explanation
Indices: 97990107--97990162 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
97990097 ACCTTCAACA
* *
97990107 CTTAGGGGTATTTTGGTCATTTTTTCC
1 CTTAGGGGCATTTCGGTCATTTTTTCC
97990134 CTTAGGGGCATTTCGGT-A-TTTTTCC
1 CTTAGGGGCATTTCGGTCATTTTTTCC
97990159 CTTA
1 CTTA
97990163 ATTATGGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 11 0.41
26 1 0.04
27 15 0.56
ACGTcount: A:0.12, C:0.18, G:0.21, T:0.48
Consensus pattern (27 bp):
CTTAGGGGCATTTCGGTCATTTTTTCC
Found at i:97990484 original size:29 final size:29
Alignment explanation
Indices: 97990424--97990524 Score: 98
Period size: 29 Copynumber: 3.5 Consensus size: 29
97990414 ATACATGCAC
* ** *
97990424 ATGGACCACTAGGCCCAA-TCTTATTCAA
1 ATGGCCCACTAGGCCCAATTCACATTCAT
* * *
97990452 ATGGCCCATCT-GGCCCAGTTCATATTCTT
1 ATGGCCCA-CTAGGCCCAATTCACATTCAT
97990481 ATGGCCCACTAGGCCCAATTCACATTCAT
1 ATGGCCCACTAGGCCCAATTCACATTCAT
* *
97990510 ATGGCCAATTAGGCC
1 ATGGCCCACTAGGCC
97990525 TAAATTATAT
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 15 0.25
29 45 0.75
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (29 bp):
ATGGCCCACTAGGCCCAATTCACATTCAT
Found at i:97992010 original size:16 final size:16
Alignment explanation
Indices: 97991989--97992021 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
97991979 ACAAATTTAA
97991989 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
*
97992005 GATTTCGGGATTTTTG
1 GATTTCAGGATTTTTG
97992021 G
1 G
97992022 GGCGTTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:97997850 original size:29 final size:29
Alignment explanation
Indices: 97997789--97997851 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
97997779 GCCTATTTGA
* * *
97997789 CCCAGTTCATATTCTTATGGCCCACTAGG
1 CCCAATTCACATTCATATGGCCCACTAGG
* * *
97997818 CCCAATTCACATTCATATGGGCCATTAGT
1 CCCAATTCACATTCATATGGCCCACTAGG
97997847 CCCAA
1 CCCAA
97997852 ATCATATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (29 bp):
CCCAATTCACATTCATATGGCCCACTAGG
Found at i:98021536 original size:47 final size:47
Alignment explanation
Indices: 98021473--98021912 Score: 654
Period size: 47 Copynumber: 9.3 Consensus size: 47
98021463 CCCTTCGGGA
* * *
98021473 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
98021520 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
98021567 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
98021614 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
98021661 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
98021708 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
98021755 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
98021802 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
98021849 CTTATCACGCATATATATACT-TTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
98021898 CCTATCACATATATA
1 CTTATCACATATATA
98021913 TACTTGTACA
Statistics
Matches: 375, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 333 0.89
49 40 0.11
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:98024034 original size:104 final size:104
Alignment explanation
Indices: 98023912--98024135 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
98023902 AATGGATATC
98023912 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
98023977 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
98024016 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
98024081 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
98024120 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
98024136 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:98030955 original size:104 final size:104
Alignment explanation
Indices: 98030833--98031056 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
98030823 AATGGATATC
98030833 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
98030898 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
98030937 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
98031002 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
98031041 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
98031057 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:98033838 original size:32 final size:33
Alignment explanation
Indices: 98033742--98033847 Score: 126
Period size: 33 Copynumber: 3.2 Consensus size: 33
98033732 TGTGCATTCC
**
98033742 TTTCAAGTGGTACACACAAAGTATACATTTCCT
1 TTTCAAGTGGTACACACAAAGTATACATAACCT
* * *
98033775 TTTCATA-TGGTATATACAAAGTATACCTAACCT
1 TTTCA-AGTGGTACACACAAAGTATACATAACCT
* *
98033808 TTCCAAGT-GTACACACAAAGTGTACATAACCT
1 TTTCAAGTGGTACACACAAAGTATACATAACCT
98033840 TTTCAAGT
1 TTTCAAGT
98033848 ATTACCCTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
32 28 0.47
33 31 0.52
34 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (33 bp):
TTTCAAGTGGTACACACAAAGTATACATAACCT
Found at i:98034543 original size:21 final size:21
Alignment explanation
Indices: 98034502--98034543 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
98034492 AAGTAGTTTA
* *
98034502 TCTATCAATAATCTTTTATTT
1 TCTATCAATAAACTTTAATTT
98034523 TCTATCAA-AAACTTTCAATTT
1 TCTATCAATAAACTTT-AATTT
98034544 ACAACATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (21 bp):
TCTATCAATAAACTTTAATTT
Found at i:98036758 original size:31 final size:31
Alignment explanation
Indices: 98036716--98036778 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
98036706 TTTTTCACAC
*
98036716 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATACTTCATAACACTGGGCCGAAGCCTT
**
98036747 TTCATACTTCATATTACTGGGCCGAAGCCTT
1 TTCATACTTCATAACACTGGGCCGAAGCCTT
98036778 T
1 T
98036779 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (31 bp):
TTCATACTTCATAACACTGGGCCGAAGCCTT
Found at i:98037022 original size:23 final size:24
Alignment explanation
Indices: 98036992--98037068 Score: 120
Period size: 25 Copynumber: 3.2 Consensus size: 24
98036982 GCCTAGCCTT
98036992 TTTTAATAACTAGGGCA-AAGCCC
1 TTTTAATAACTAGGGCATAAGCCC
98037015 TTTTAATAACTAGGGCATAAGCCC
1 TTTTAATAACTAGGGCATAAGCCC
* *
98037039 TTTATCATAACTGGGGCATAAGCCC
1 TTT-TAATAACTAGGGCATAAGCCC
98037064 TTTTA
1 TTTTA
98037069 CACTTCCTCC
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
23 17 0.35
24 10 0.20
25 22 0.45
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (24 bp):
TTTTAATAACTAGGGCATAAGCCC
Found at i:98037142 original size:20 final size:20
Alignment explanation
Indices: 98037117--98037183 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
98037107 TTATGAATAC
98037117 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
98037137 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
98037157 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
98037177 ACCATGT
1 ATCATGT
98037184 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:98037148 original size:11 final size:11
Alignment explanation
Indices: 98037117--98037172 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
98037107 TTATGAATAC
98037117 ATCATGTGCAT
1 ATCATGTGCAT
*
98037128 ATCA--TACAT
1 ATCATGTGCAT
98037137 ATCATGTGCAT
1 ATCATGTGCAT
*
98037148 ATCA--TACAT
1 ATCATGTGCAT
*
98037157 GTCATGTGCAT
1 ATCATGTGCAT
98037168 ATCAT
1 ATCAT
98037173 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Done.