Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 300 of 352
Found at i:98432569 original size:13 final size:13
Alignment explanation
Indices: 98432551--98432581 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
98432541 TTAAACTTAC
98432551 ATGAAGCTAGAGT
1 ATGAAGCTAGAGT
98432564 ATGAAGCTAGAGT
1 ATGAAGCTAGAGT
98432577 ATGAA
1 ATGAA
98432582 AACCAGCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (13 bp):
ATGAAGCTAGAGT
Found at i:98460756 original size:35 final size:35
Alignment explanation
Indices: 98460716--98460817 Score: 114
Period size: 35 Copynumber: 2.9 Consensus size: 35
98460706 AAGTATGTAG
* *
98460716 ATGTGAGGTCATATTGAGTTTGTATATTCGGCTAC
1 ATGTGAGGTTATATTGAATTTGTATATTCGGCTAC
* * * * ** *
98460751 TTGTGAAGTTATATTAAACTTGTATATTCGATTTC
1 ATGTGAGGTTATATTGAATTTGTATATTCGGCTAC
*
98460786 ATATGAGGTTATATTGAATTTGTATATTCGGC
1 ATGTGAGGTTATATTGAATTTGTATATTCGGC
98460818 CATATGAGAT
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
35 51 1.00
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (35 bp):
ATGTGAGGTTATATTGAATTTGTATATTCGGCTAC
Found at i:98460841 original size:70 final size:71
Alignment explanation
Indices: 98460719--98460898 Score: 170
Period size: 70 Copynumber: 2.6 Consensus size: 71
98460709 TATGTAGATG
* * * * * * *
98460719 TGAGGTCATATTGAGTTTGTATATTCGGCTACT-TGTGA-AGTTATATTAAACTTGTATATTCGA
1 TGAGGTTATATTGAATTTGTATATTCGGCCA-TATGAGATAGTTATATTAAACTTGAACATTAGA
*
98460782 TTTCATA
65 TTACATA
* * *
98460789 TGAGGTTATATTGAATTTGTATATTCGGCCATATGAGATA-TTTTATTGAACTTGAACATTAGGT
1 TGAGGTTATATTGAATTTGTATATTCGGCCATATGAGATAGTTATATTAAACTTGAACATTAGAT
*
98460853 TACATG
66 TACATA
* * * *
98460859 TGATGATA-ATTTGAACTTATATATTCGGCCATATGAGATA
1 TGAGGTTATA-TTGAATTTGTATATTCGGCCATATGAGATA
98460899 ATATAATGAA
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
69 2 0.02
70 88 0.97
71 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (71 bp):
TGAGGTTATATTGAATTTGTATATTCGGCCATATGAGATAGTTATATTAAACTTGAACATTAGAT
TACATA
Found at i:98460944 original size:50 final size:52
Alignment explanation
Indices: 98460890--98460995 Score: 126
Period size: 50 Copynumber: 2.1 Consensus size: 52
98460880 TATTCGGCCA
* * *
98460890 TATGAGATAATATAATGAACCTTGTGTA-TTT-GGCTATATAGGTAAGTTTT
1 TATGAGATAATATAATGAACCTTATATATTTTAGGCTATATAGGTAAGTATT
* * * * *
98460940 TATGAGATGATATATTGGATCTTATATATTTTAGGTTATATAGGTAAGTATT
1 TATGAGATAATATAATGAACCTTATATATTTTAGGCTATATAGGTAAGTATT
98460992 TATG
1 TATG
98460996 TGGTGTTATT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 22 0.48
51 3 0.07
52 21 0.46
ACGTcount: A:0.32, C:0.04, G:0.20, T:0.44
Consensus pattern (52 bp):
TATGAGATAATATAATGAACCTTATATATTTTAGGCTATATAGGTAAGTATT
Found at i:98461871 original size:38 final size:38
Alignment explanation
Indices: 98461820--98461896 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
98461810 TATATACATG
98461820 TACATGTAGTGTATTCGATTGAAGCTTGACATAATGGT
1 TACATGTAGTGTATTCGATTGAAGCTTGACATAATGGT
*
98461858 TACATGTTGTGTATTCGATTGAAGCTTGACATAATGGT
1 TACATGTAGTGTATTCGATTGAAGCTTGACATAATGGT
98461896 T
1 T
98461897 TGGTTTATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.39
Consensus pattern (38 bp):
TACATGTAGTGTATTCGATTGAAGCTTGACATAATGGT
Found at i:98465771 original size:17 final size:17
Alignment explanation
Indices: 98465733--98465769 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
98465723 TGTCCATAAC
98465733 CAAATTTCACAAATGTT
1 CAAATTTCACAAATGTT
98465750 CAAATTTC-CGAAA-GTT
1 CAAATTTCAC-AAATGTT
98465766 CAAA
1 CAAA
98465770 ATCTTGGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (17 bp):
CAAATTTCACAAATGTT
Found at i:98473541 original size:20 final size:20
Alignment explanation
Indices: 98473516--98473554 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
98473506 ATGGTGAAGT
98473516 AAGCATATTAGAGGCTAGAG
1 AAGCATATTAGAGGCTAGAG
98473536 AAGCATATTAGAGGCTAGA
1 AAGCATATTAGAGGCTAGA
98473555 CCTAACATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.28, T:0.21
Consensus pattern (20 bp):
AAGCATATTAGAGGCTAGAG
Found at i:98474744 original size:20 final size:20
Alignment explanation
Indices: 98474694--98474748 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
98474684 TTTATTATTT
98474694 ATTATTATTCTATTAAATCATA
1 ATTATTA-T-TATTAAATCATA
* *
98474716 ATT-TATATTATTAAATTATG
1 ATTAT-TATTATTAAATCATA
98474736 ATTATTATTATTA
1 ATTATTATTATTA
98474749 TTAAAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 21 0.72
21 3 0.10
22 5 0.17
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTATTATTATTAAATCATA
Found at i:98475130 original size:16 final size:15
Alignment explanation
Indices: 98475104--98475134 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
98475094 AATAGAACAG
98475104 GAAAGAAAAAGGAAA
1 GAAAGAAAAAGGAAA
98475119 GAAAGAAGAAAGGAAA
1 GAAAGAA-AAAGGAAA
98475135 AATTTAGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
GAAAGAAAAAGGAAA
Found at i:98476186 original size:45 final size:45
Alignment explanation
Indices: 98476125--98476235 Score: 161
Period size: 45 Copynumber: 2.5 Consensus size: 45
98476115 CGACTATTGT
*
98476125 TACTGTTACTGTTACTGTTACCGATTC-GACACTTTGTGTGTCAAA
1 TACTGTTACTGTTACTGTTACAGATTCAG-CACTTTGTGTGTCAAA
* * **
98476170 TACTATTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACAGATTCAGCACTTTGTGTGTCAAA
98476215 TACTGTTACTGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
98476236 TGCTACTGCT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 57 0.98
46 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACAGATTCAGCACTTTGTGTGTCAAA
Found at i:98482336 original size:38 final size:37
Alignment explanation
Indices: 98482292--98482402 Score: 97
Period size: 38 Copynumber: 3.0 Consensus size: 37
98482282 TAATTATGTA
98482292 AATATATATAATTTAATTATTAATTACTT-TTTTATTT
1 AATATATATAATTTAATTATTAATTA-TTATTTTATTT
* * *
98482329 AAGTATATAGATATTT-ATTATTTATTATTATTCTA-TT
1 AA-TATATATA-ATTTAATTATTAATTATTATTTTATTT
*
98482366 AA-AT-TATAATTTATATTATTAAATTATGATTATTATT
1 AATATATATAATTTA-ATTATT-AATTATTATT-TTATT
98482403 ATTATTAAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
33 4 0.07
34 3 0.05
35 8 0.14
36 8 0.14
37 10 0.17
38 22 0.37
39 4 0.07
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.57
Consensus pattern (37 bp):
AATATATATAATTTAATTATTAATTATTATTTTATTT
Found at i:98482385 original size:20 final size:20
Alignment explanation
Indices: 98482352--98482406 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 20
98482342 TTTATTATTT
98482352 ATTATTATTCTATTAAATTATA
1 ATTATTA-T-TATTAAATTATA
*
98482374 ATT-TATATTATTAAATTATG
1 ATTAT-TATTATTAAATTATA
98482394 ATTATTATTATTA
1 ATTATTATTATTA
98482407 TTAAAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 22 0.73
21 3 0.10
22 5 0.17
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (20 bp):
ATTATTATTATTAAATTATA
Found at i:98482391 original size:25 final size:26
Alignment explanation
Indices: 98482343--98482409 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
98482333 ATATAGATAT
* **
98482343 TTATTATTTATTATTATTCTATTAAA
1 TTATAATTTATTATTATTAAATTAAA
*
98482369 TTATAATTTA-TATTATTAAATTATGA
1 TTATAATTTATTATTATTAAATTA-AA
*
98482395 TTATTA-TTATTATTA
1 TTATAATTTATTATTA
98482410 AAAATAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
25 14 0.41
26 20 0.59
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (26 bp):
TTATAATTTATTATTATTAAATTAAA
Found at i:98482723 original size:13 final size:14
Alignment explanation
Indices: 98482705--98482742 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
98482695 TTATAAAGTT
98482705 AATAAAATAAAAG-
1 AATAAAATAAAAGA
* *
98482718 AATAAAAGAAATGA
1 AATAAAATAAAAGA
98482732 AATAAAATAAA
1 AATAAAATAAA
98482743 GTAAAGAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (14 bp):
AATAAAATAAAAGA
Found at i:98482806 original size:16 final size:15
Alignment explanation
Indices: 98482780--98482810 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
98482770 AATAGAACAG
98482780 GAAAGAAAAAGGAAA
1 GAAAGAAAAAGGAAA
98482795 GAAAGAAGAAAGGAAA
1 GAAAGAA-AAAGGAAA
98482811 AATTTAGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
GAAAGAAAAAGGAAA
Found at i:98483557 original size:40 final size:40
Alignment explanation
Indices: 98483511--98483589 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 40
98483501 TTATTGGATT
* ** *
98483511 CTGAATATTGTTTTGAATATCGAATTGAACTGTGAAATTA
1 CTGAATAATGTTACGAATATCGAATTGAACTGTAAAATTA
* * *
98483551 CTGAATAATGTTACGTATATTGCATTGAACTGTAAAATT
1 CTGAATAATGTTACGAATATCGAATTGAACTGTAAAATT
98483590 TCTAATGAAG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.39
Consensus pattern (40 bp):
CTGAATAATGTTACGAATATCGAATTGAACTGTAAAATTA
Found at i:98483852 original size:45 final size:45
Alignment explanation
Indices: 98483802--98483912 Score: 161
Period size: 45 Copynumber: 2.5 Consensus size: 45
98483792 CGACTATTGT
* *
98483802 TACTGTTACTGTTACTGTTACCGATTC-GATACTTTATGTGTCGAA
1 TACTGTTACTGTTACTGTTACAGATTCAG-CACTTTATGTGTCGAA
* * *
98483847 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACAGATTCAGCACTTTATGTGTCGAA
98483892 TACTGTTACTGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
98483913 TGCTACCATT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 58 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACAGATTCAGCACTTTATGTGTCGAA
Found at i:98483861 original size:51 final size:50
Alignment explanation
Indices: 98483780--98483919 Score: 141
Period size: 45 Copynumber: 2.9 Consensus size: 50
98483770 TACTGATCAG
* * *
98483780 GCAC-TTATGTGCCGACTATTGTTACTGTTACTGTTACTGTTACCGATTC-
1 GCACTTTATGTGTCGAATACTGTTACTGTTACTGTTACTG-TACCGATTCA
* *
98483829 GATACTTTATGTGTCGAATACTGTTACCGTTACTGTTAC---A--GATTCA
1 G-CACTTTATGTGTCGAATACTGTTACTGTTACTGTTACTGTACCGATTCA
* *
98483875 GCACTTTGTGTGTTGAATACTGTTACTGTTACTGTTACTGCTACC
1 GCACTTTATGTGTCGAATACTGTTACTGTTACTGTTACTG-TACC
98483920 ATTACTGATT
Statistics
Matches: 73, Mismatches: 9, Indels: 16
0.74 0.09 0.16
Matches are distributed among these distances:
45 38 0.52
46 1 0.01
47 1 0.01
49 2 0.03
50 2 0.03
51 29 0.40
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.41
Consensus pattern (50 bp):
GCACTTTATGTGTCGAATACTGTTACTGTTACTGTTACTGTACCGATTCA
Found at i:98484621 original size:9 final size:9
Alignment explanation
Indices: 98484609--98484638 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
98484599 CGAAAATTAT
98484609 AAAAAAAT-
1 AAAAAAATA
98484617 AAAAAAATA
1 AAAAAAATA
98484626 AAAAAAATA
1 AAAAAAATA
98484635 AAAA
1 AAAA
98484639 TTTGGAGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAAATA
Found at i:98484622 original size:7 final size:8
Alignment explanation
Indices: 98484607--98484638 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
98484597 GTCGAAAATT
98484607 ATAAAAAA
1 ATAAAAAA
98484615 ATAAAAAA
1 ATAAAAAA
98484623 ATAAAAAAA
1 AT-AAAAAA
98484632 ATAAAAA
1 ATAAAAA
98484639 TTTGGAGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
ATAAAAAA
Found at i:98487141 original size:14 final size:15
Alignment explanation
Indices: 98487124--98487157 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
98487114 AAACAGAGAG
98487124 GAAAAAG-AAGGAAA
1 GAAAAAGAAAGGAAA
*
98487138 GAAAAAGAAAGGAAG
1 GAAAAAGAAAGGAAA
98487153 GAAAA
1 GAAAA
98487158 TTAGGATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
GAAAAAGAAAGGAAA
Found at i:98488588 original size:46 final size:45
Alignment explanation
Indices: 98488470--98488589 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 45
98488460 GTGAGCCAAC
* * * *
98488470 GTAAGACATGTTTGGGACATGCATCAGCCATATCATGAGTGCCAGT
1 GTAAGACATGTCTGGGACATGCATC-GGCATATCACGAGAGCCAGT
*
98488516 GTAAGACATGTCTGGGACATGCATCGGCAT-TGAGACGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCATAT--CACGAGAGCCAGT
98488562 GTAAGACATGTCTGGGACATGCATCGGC
1 GTAAGACATGTCTGGGACATGCATCGGC
98488590 CTCGGGATAT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
44 1 0.01
45 4 0.06
46 62 0.93
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
GTAAGACATGTCTGGGACATGCATCGGCATATCACGAGAGCCAGT
Found at i:98488630 original size:48 final size:46
Alignment explanation
Indices: 98488510--98488630 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 46
98488500 TATCATGAGT
* * *
98488510 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAAGAAA
* * *
98488556 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGGGATATACAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGA-AGA-AA
* *
98488604 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCCAGTGTAAGACATGTCTGGGACATG
98488631 GTGTCAGCTT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
46 38 0.58
47 1 0.02
48 26 0.40
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.21
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAAGAAA
Found at i:98488707 original size:49 final size:49
Alignment explanation
Indices: 98488650--98488829 Score: 157
Period size: 49 Copynumber: 3.7 Consensus size: 49
98488640 TGTTGTGTAT
* *
98488650 CAGTGTAAGACCTGTCTAGGACATGACATCAACACTGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGACATCAACACTGATAGATGAAAGC
* * * ** * *
98488699 CAGTGTAAGACCTGTCTGGGACATGGCATTAGCTTTGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGACATCAACACTGATAGATGAAAGC
* * * * ** * **
98488748 CAGTGTAAAACCTGTCTGGGACACGGCATCGACTTTAAT-G-TGTTAGC
1 CAGTGTAAGACCTGTCTGGGACATGACATCAACACTGATAGATGAAAGC
* *
98488795 CAGTGTAAGACCATGTCTGGGACATGGCGTCAACA
1 CAGTGTAAGACC-TGTCTGGGACATGACATCAACA
98488830 TTTTATCCCA
Statistics
Matches: 106, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
47 15 0.14
48 18 0.17
49 73 0.69
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGACATCAACACTGATAGATGAAAGC
Found at i:98488733 original size:93 final size:96
Alignment explanation
Indices: 98488607--98488822 Score: 235
Period size: 98 Copynumber: 2.3 Consensus size: 96
98488597 TATACAAGCT
** * * *
98488607 AGTGTAAGACCTGTCTGGGACATGGTGTCAGC-TTG-T-TGTG-TA-TCAGTGTAAGACCTGTCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCTTTGATATATGAAAGTCAGTGTAAAACCTGTCT
* *
98488667 AGGACATGACATCAACACTGATAGATGAGAGCC
66 AGGACACGACATCAACACTAAT-G-TGAGAGCC
*
98488700 AGTGTAAGACCTGTCTGGGACATGGCATTAGCTTTGATATATGAAAGTCAGTGTAAAACCTGTCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCTTTGATATATGAAAGTCAGTGTAAAACCTGTCT
* * * ** **
98488765 GGGACACGGCATCGACTTTAATGTGTTAGCC
66 AGGACACGACATCAACACTAATGTGAGAGCC
98488796 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
98488823 GTCAACATTT
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
93 29 0.28
94 3 0.03
95 1 0.01
96 20 0.20
97 17 0.17
98 32 0.31
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (96 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCTTTGATATATGAAAGTCAGTGTAAAACCTGTCT
AGGACACGACATCAACACTAATGTGAGAGCC
Found at i:98498384 original size:49 final size:49
Alignment explanation
Indices: 98498328--98498428 Score: 202
Period size: 49 Copynumber: 2.1 Consensus size: 49
98498318 AAAATGAGAA
98498328 TGAATTAAAACCCTGCAACTTCAATTCAATTAAACTTAATGTGAAGGCT
1 TGAATTAAAACCCTGCAACTTCAATTCAATTAAACTTAATGTGAAGGCT
98498377 TGAATTAAAACCCTGCAACTTCAATTCAATTAAACTTAATGTGAAGGCT
1 TGAATTAAAACCCTGCAACTTCAATTCAATTAAACTTAATGTGAAGGCT
98498426 TGA
1 TGA
98498429 TAATTTGTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.31
Consensus pattern (49 bp):
TGAATTAAAACCCTGCAACTTCAATTCAATTAAACTTAATGTGAAGGCT
Found at i:98500640 original size:33 final size:33
Alignment explanation
Indices: 98500602--98500700 Score: 162
Period size: 33 Copynumber: 3.0 Consensus size: 33
98500592 GACTGAGTGG
*
98500602 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
* *
98500635 GAGTGTTTTGCTGCTGGACAGAAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
*
98500668 GGGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
98500701 CAAGAAGAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 60 1.00
ACGTcount: A:0.18, C:0.10, G:0.40, T:0.31
Consensus pattern (33 bp):
GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
Found at i:98507710 original size:154 final size:154
Alignment explanation
Indices: 98507430--98507735 Score: 594
Period size: 154 Copynumber: 2.0 Consensus size: 154
98507420 TTGAACAGAT
*
98507430 TAGTATATATGTTTATATCTTAGAAATTAAAGAGATTATCCATTGGAGATTTAAAACTATACAAA
1 TAGTATATATGTTTATATCATAGAAATTAAAGAGATTATCCATTGGAGATTTAAAACTATACAAA
98507495 GGTAGGGGATTACCATATAAAACATAAAAGAATCGAAAAACTAGTATGTATATGTTCTAGTAAAA
66 GGTAGGGGATTACCATATAAAACATAAAAGAATCGAAAAACTAGTATGTATATGTTCTAGTAAAA
98507560 GCTACGAATTTGGAGATGAAAAAC
131 GCTACGAATTTGGAGATGAAAAAC
98507584 TAGTATATATGTTTATATCATAGAAATTAAAGAGATTATCCATTGGAGATTTAAAACTATACAAA
1 TAGTATATATGTTTATATCATAGAAATTAAAGAGATTATCCATTGGAGATTTAAAACTATACAAA
98507649 GGTAGGGGATTACCATATAAAACATAAAAGAATCGAAAAACTAGTATGTATATGTTCTAGTAAAA
66 GGTAGGGGATTACCATATAAAACATAAAAGAATCGAAAAACTAGTATGTATATGTTCTAGTAAAA
*
98507714 GCTACGAATTTGGAGGTGAAAA
131 GCTACGAATTTGGAGATGAAAA
98507736 TAAAAGTTAA
Statistics
Matches: 150, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
154 150 1.00
ACGTcount: A:0.44, C:0.09, G:0.17, T:0.30
Consensus pattern (154 bp):
TAGTATATATGTTTATATCATAGAAATTAAAGAGATTATCCATTGGAGATTTAAAACTATACAAA
GGTAGGGGATTACCATATAAAACATAAAAGAATCGAAAAACTAGTATGTATATGTTCTAGTAAAA
GCTACGAATTTGGAGATGAAAAAC
Found at i:98507762 original size:14 final size:14
Alignment explanation
Indices: 98507745--98507777 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
98507735 ATAAAAGTTA
98507745 ACAAATATAGGGGG
1 ACAAATATAGGGGG
98507759 ACAAATATAGGGGG
1 ACAAATATAGGGGG
98507773 ACAAA
1 ACAAA
98507778 GAATATGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.48, C:0.09, G:0.30, T:0.12
Consensus pattern (14 bp):
ACAAATATAGGGGG
Found at i:98508273 original size:22 final size:22
Alignment explanation
Indices: 98508248--98508290 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
98508238 TAATAAAAAG
98508248 AATATCTACAAAATATTCCTAA
1 AATATCTACAAAATATTCCTAA
* *
98508270 AATATTTACAGAATATTCCTA
1 AATATCTACAAAATATTCCTA
98508291 CACTCCCCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (22 bp):
AATATCTACAAAATATTCCTAA
Found at i:98510619 original size:22 final size:22
Alignment explanation
Indices: 98510594--98510636 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
98510584 TAATAAAAAG
98510594 AATATCTACAAAATATTCCTAA
1 AATATCTACAAAATATTCCTAA
* *
98510616 AATATTTACAGAATATTCCTA
1 AATATCTACAAAATATTCCTA
98510637 CAGTTTTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (22 bp):
AATATCTACAAAATATTCCTAA
Found at i:98512779 original size:27 final size:27
Alignment explanation
Indices: 98512749--98512803 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
98512739 CAAATTCAGC
98512749 TCTCTCTA-TTCTCTCTAAA-CTCTCAAT
1 TCTCT-TAGTTCTCTC-AAATCTCTCAAT
*
98512776 TCTCTTAGTTCTCTCAAATTTCTCAAT
1 TCTCTTAGTTCTCTCAAATCTCTCAAT
98512803 T
1 T
98512804 TTTGTTCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.22, C:0.29, G:0.02, T:0.47
Consensus pattern (27 bp):
TCTCTTAGTTCTCTCAAATCTCTCAAT
Found at i:98516668 original size:26 final size:26
Alignment explanation
Indices: 98516639--98516691 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
98516629 TTTACTAAAT
98516639 TCCAATGATAAATAGTCATCATTATC
1 TCCAATGATAAATAGTCATCATTATC
98516665 TCCAATGATAAATAGTCATCATTATC
1 TCCAATGATAAATAGTCATCATTATC
98516691 T
1 T
98516692 ACTAACTCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.36
Consensus pattern (26 bp):
TCCAATGATAAATAGTCATCATTATC
Found at i:98530487 original size:26 final size:26
Alignment explanation
Indices: 98530457--98530510 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
98530447 TAATACTATT
98530457 TTATCTTGAGTTTTTACAATTTTTAG
1 TTATCTTGAGTTTTTACAATTTTTAG
98530483 TTATCTTGAGTTTTTACAATTTTTAG
1 TTATCTTGAGTTTTTACAATTTTTAG
98530509 TT
1 TT
98530511 TTGGCTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (26 bp):
TTATCTTGAGTTTTTACAATTTTTAG
Found at i:98534189 original size:34 final size:33
Alignment explanation
Indices: 98534144--98534210 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
98534134 AATTTATTAT
98534144 TATATATATTATAAAATAAAAACATTAA-GTATA
1 TATATATATTATAAAATAAAAA-ATTAATGTATA
*
98534177 TATATTATATTATATAATAAAAAATTAATGTATA
1 TATA-TATATTATAAAATAAAAAATTAATGTATA
98534211 ATAAAACAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
33 9 0.29
34 22 0.71
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.40
Consensus pattern (33 bp):
TATATATATTATAAAATAAAAAATTAATGTATA
Found at i:98539794 original size:46 final size:46
Alignment explanation
Indices: 98539742--98539880 Score: 215
Period size: 46 Copynumber: 3.0 Consensus size: 46
98539732 AGTGTGCTCT
*
98539742 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
98539788 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
98539834 GTGACATGAAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
98539881 ATGACAGAAA
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
46 51 0.59
47 35 0.41
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:98539928 original size:50 final size:48
Alignment explanation
Indices: 98539750--98539917 Score: 209
Period size: 46 Copynumber: 3.5 Consensus size: 48
98539740 CTCTGATATG
* * * *
98539750 AAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACCTGATATG--
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAA
* *
98539796 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAA
*
98539844 AAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AA
*
98539891 ATGAATGAGTAAGACCATAGTTGAAAG
1 A--AATGAGTAAGACCATGGTTGAAAG
98539918 GCACTATGGC
Statistics
Matches: 108, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
46 44 0.41
47 40 0.37
48 3 0.03
49 2 0.02
50 19 0.18
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (48 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAA
Found at i:98543276 original size:32 final size:32
Alignment explanation
Indices: 98543218--98543288 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
98543208 TAGTTGGATT
*
98543218 TTGAAATTATTATGTCTTGAATTTGTTACATA
1 TTGAAATTATTATGTCTTGAACTTGTTACATA
* * **
98543250 TTGAATTTATTATGT-TTTAAGCTTGTTGGATA
1 TTGAAATTATTATGTCTTGAA-CTTGTTACATA
98543282 TTGAAAT
1 TTGAAAT
98543289 GATTGACAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 4 0.12
32 28 0.88
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.51
Consensus pattern (32 bp):
TTGAAATTATTATGTCTTGAACTTGTTACATA
Found at i:98544564 original size:18 final size:18
Alignment explanation
Indices: 98544541--98544583 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
98544531 AAAATTTAAA
98544541 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
98544559 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
98544577 ATGTAAA
1 ATATAAA
98544584 AACAGATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:98544703 original size:20 final size:19
Alignment explanation
Indices: 98544659--98544704 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
98544649 CATCCAAACA
98544659 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
* *
98544678 CTAGAAAAGTAAATTATTTT
1 CCAGAAAAGTAAATCA-TTT
98544698 CCAGAAA
1 CCAGAAA
98544705 TCATTTTTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:98546244 original size:13 final size:13
Alignment explanation
Indices: 98546201--98546244 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
98546191 AATATATATT
*
98546201 AACCCAAGTACCC
1 AACCCAATTACCC
98546214 AACCC-A--ACCC
1 AACCCAATTACCC
98546224 AACCCAATTACCC
1 AACCCAATTACCC
98546237 AACCCAAT
1 AACCCAAT
98546245 CATAAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 9 0.32
11 1 0.04
12 1 0.04
13 17 0.61
ACGTcount: A:0.41, C:0.48, G:0.02, T:0.09
Consensus pattern (13 bp):
AACCCAATTACCC
Found at i:98546310 original size:7 final size:6
Alignment explanation
Indices: 98546246--98546309 Score: 58
Period size: 6 Copynumber: 10.2 Consensus size: 6
98546236 CAACCCAATC
* * *
98546246 ATAAAA ATTAAAA AT-AAT TTAATAA ATAAAA ATAAAA ATGTAAAA CTAAAA
1 ATAAAA A-TAAAA ATAAAA ATAA-AA ATAAAA ATAAAA A--TAAAA ATAAAA
98546297 ATAAAA ATAAAA A
1 ATAAAA ATAAAA A
98546310 AATATAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
5 3 0.06
6 29 0.62
7 10 0.21
8 5 0.11
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (6 bp):
ATAAAA
Found at i:98546310 original size:20 final size:20
Alignment explanation
Indices: 98546272--98546310 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
98546262 ATTTAATAAA
**
98546272 TAAAAATAAAAATGTAAAAC
1 TAAAAATAAAAATAAAAAAC
98546292 TAAAAATAAAAATAAAAAA
1 TAAAAATAAAAATAAAAAA
98546311 ATATAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.18
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:98546342 original size:9 final size:9
Alignment explanation
Indices: 98546328--98546395 Score: 109
Period size: 9 Copynumber: 7.6 Consensus size: 9
98546318 TTTATACAAA
98546328 TAATTCGGT
1 TAATTCGGT
*
98546337 TAATTCAGT
1 TAATTCGGT
*
98546346 TAATTCGGG
1 TAATTCGGT
98546355 TAATTCGGT
1 TAATTCGGT
*
98546364 TAATTCGAT
1 TAATTCGGT
98546373 TAATTCGGT
1 TAATTCGGT
98546382 TAATTCGGT
1 TAATTCGGT
98546391 TAATT
1 TAATT
98546396 TTATACTTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:98550341 original size:24 final size:24
Alignment explanation
Indices: 98550311--98550358 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
98550301 TACTAATTTC
98550311 ATCACAACATCATATCATACCGAT
1 ATCACAACATCATATCATACCGAT
98550335 ATCACAACATCATATCATACCGAT
1 ATCACAACATCATATCATACCGAT
98550359 CCAAACCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.29, G:0.04, T:0.25
Consensus pattern (24 bp):
ATCACAACATCATATCATACCGAT
Found at i:98551193 original size:41 final size:41
Alignment explanation
Indices: 98551136--98551218 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
98551126 TTGGGGACTT
*
98551136 AAATAGCAATTGATCTAAAAGGCCAAAATGGTTATTGGACC
1 AAATAGAAATTGATCTAAAAGGCCAAAATGGTTATTGGACC
*
98551177 AAATAGAAATTGATCTAAAGGGCCAAAATGGTTATTGGACC
1 AAATAGAAATTGATCTAAAAGGCCAAAATGGTTATTGGACC
98551218 A
1 A
98551219 TTTTTGGATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.42, C:0.13, G:0.20, T:0.24
Consensus pattern (41 bp):
AAATAGAAATTGATCTAAAAGGCCAAAATGGTTATTGGACC
Found at i:98554463 original size:31 final size:30
Alignment explanation
Indices: 98554425--98554553 Score: 147
Period size: 31 Copynumber: 4.3 Consensus size: 30
98554415 TAGGCATCAA
98554425 TATTCATATTTGCATTATCATACCCTATAAT
1 TATTCATATTTGCA-TATCATACCCTATAAT
98554456 TATTCATATTTGCATATTCATACCCTATAAT
1 TATTCATATTTGCATA-TCATACCCTATAAT
* *
98554487 TATTCATATTTGCATGTTCATACCTTAT-AT
1 TATTCATATTTGCAT-ATCATACCCTATAAT
* * *
98554517 TCATTCACA--TACATATCATACCCTGTAAT
1 T-ATTCATATTTGCATATCATACCCTATAAT
*
98554546 TTTTCATA
1 TATTCATA
98554554 CCTTGTACAT
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
28 14 0.16
29 7 0.08
30 5 0.06
31 59 0.69
ACGTcount: A:0.31, C:0.20, G:0.04, T:0.45
Consensus pattern (30 bp):
TATTCATATTTGCATATCATACCCTATAAT
Found at i:98554492 original size:17 final size:17
Alignment explanation
Indices: 98554438--98554494 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
98554428 TCATATTTGC
98554438 ATTA-TCATACCCTATA
1 ATTATTCATACCCTATA
* *
98554454 ATTATTCATA---TTTGC
1 ATTATTCATACCCTAT-A
98554469 A-TATTCATACCCTATA
1 ATTATTCATACCCTATA
98554485 ATTATTCATA
1 ATTATTCATA
98554495 TTTGCATGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 11
0.67 0.09 0.24
Matches are distributed among these distances:
14 10 0.32
15 1 0.03
16 5 0.16
17 15 0.48
ACGTcount: A:0.35, C:0.19, G:0.02, T:0.44
Consensus pattern (17 bp):
ATTATTCATACCCTATA
Found at i:98555879 original size:13 final size:12
Alignment explanation
Indices: 98555851--98555893 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
98555841 AAAACTCTTC
98555851 TAAAAGAAAACT
1 TAAAAGAAAACT
*
98555863 TAAAAGAAATTCT
1 TAAAAGAAA-ACT
98555876 TAAAAAGAAAACT
1 T-AAAAGAAAACT
*
98555889 CAAAA
1 TAAAA
98555894 AGAATTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 13 0.50
13 5 0.19
14 8 0.31
ACGTcount: A:0.65, C:0.09, G:0.07, T:0.19
Consensus pattern (12 bp):
TAAAAGAAAACT
Found at i:98560305 original size:42 final size:42
Alignment explanation
Indices: 98560258--98560338 Score: 162
Period size: 42 Copynumber: 1.9 Consensus size: 42
98560248 ATATATATGT
98560258 ATGTAAGTGGTTGCTTCAATGGTAGACTATAGACAGCGTGAA
1 ATGTAAGTGGTTGCTTCAATGGTAGACTATAGACAGCGTGAA
98560300 ATGTAAGTGGTTGCTTCAATGGTAGACTATAGACAGCGT
1 ATGTAAGTGGTTGCTTCAATGGTAGACTATAGACAGCGT
98560339 ACTCCCACGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (42 bp):
ATGTAAGTGGTTGCTTCAATGGTAGACTATAGACAGCGTGAA
Found at i:98560921 original size:9 final size:9
Alignment explanation
Indices: 98560901--98560958 Score: 57
Period size: 9 Copynumber: 6.3 Consensus size: 9
98560891 TTTTAAAAAC
98560901 TAAAAATCAT
1 TAAAAAT-AT
98560911 TAAAAATAT
1 TAAAAATAT
98560920 TAAAAATA-
1 TAAAAATAT
98560928 TAAAAATA-
1 TAAAAATAT
*
98560936 TATATAATATT
1 TA-AAAATA-T
*
98560947 TTAAAATAT
1 TAAAAATAT
98560956 TAA
1 TAA
98560959 TTAAATGTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
8 10 0.24
9 18 0.44
10 12 0.29
11 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (9 bp):
TAAAAATAT
Found at i:98560945 original size:17 final size:17
Alignment explanation
Indices: 98560901--98560936 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
98560891 TTTTAAAAAC
98560901 TAAAAATCATTAAAAATAT
1 TAAAAAT-A-TAAAAATAT
98560920 TAAAAATATAAAAATAT
1 TAAAAATATAAAAATAT
98560937 ATATAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 1 0.06
19 7 0.41
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAAATATAAAAATAT
Found at i:98561301 original size:16 final size:17
Alignment explanation
Indices: 98561269--98561310 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
98561259 GTACAATCAG
*
98561269 AATATATTATCAAAATA-
1 AATATATT-TAAAAATAT
98561286 AATATATTTAAAAATAT
1 AATATATTTAAAAATAT
98561303 AA-ATATTT
1 AATATATTT
98561311 TTTATTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
AATATATTTAAAAATAT
Found at i:98568460 original size:47 final size:49
Alignment explanation
Indices: 98568406--98568499 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 49
98568396 TTATTTTTCT
*
98568406 TATTTAATTTTAATT-A-ATACCAAATAAAATTTAGAACTTAAATTTTG
1 TATTTAATTTTAATTAATATACCAAACAAAATTTAGAACTTAAATTTTG
* *
98568453 TATTTAATTTTAATTAATATACGAAACAAAATTTATAACTTAAATTT
1 TATTTAATTTTAATTAATATACCAAACAAAATTTAGAACTTAAATTT
98568500 GATCCGAAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
47 15 0.36
48 1 0.02
49 26 0.62
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (49 bp):
TATTTAATTTTAATTAATATACCAAACAAAATTTAGAACTTAAATTTTG
Found at i:98568945 original size:15 final size:16
Alignment explanation
Indices: 98568921--98568953 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
98568911 ATAATTTAAC
98568921 TTCAGAACTT-ATTTT
1 TTCAGAACTTAATTTT
*
98568936 TTCAGTACTTAATTTT
1 TTCAGAACTTAATTTT
98568952 TT
1 TT
98568954 ATATTATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.24, C:0.12, G:0.06, T:0.58
Consensus pattern (16 bp):
TTCAGAACTTAATTTT
Found at i:98569079 original size:22 final size:21
Alignment explanation
Indices: 98569054--98569100 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
98569044 ATAAATTTAA
* *
98569054 TTATTTATCATTTTATTATATT
1 TTATTTAACATTATATTAT-TT
98569076 TTATTTAACATTATATTATTT
1 TTATTTAACATTATATTATTT
98569097 TTAT
1 TTAT
98569101 AAAAAAATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (21 bp):
TTATTTAACATTATATTATTT
Found at i:98575286 original size:21 final size:21
Alignment explanation
Indices: 98575236--98575293 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
98575226 AAGTTGAAAT
*
98575236 TTTTATTTTTATTT-AATATA
1 TTTTAATTTTATTTAAATATA
*
98575256 TTATATATTTTATTTAAAT-TAA
1 TTTTA-ATTTTATTTAAATAT-A
*
98575278 TTTTAATTTTTTTTAA
1 TTTTAATTTTATTTAA
98575294 CTTACTTATG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
20 4 0.13
21 19 0.61
22 8 0.26
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTAATTTTATTTAAATATA
Found at i:98576805 original size:2 final size:2
Alignment explanation
Indices: 98576798--98576837 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
98576788 TCACTACTTC
98576798 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98576838 TTGTAAAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98580932 original size:13 final size:13
Alignment explanation
Indices: 98580914--98580938 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98580904 TGAACGTGAG
98580914 TAGGTGATTCGAA
1 TAGGTGATTCGAA
98580927 TAGGTGATTCGA
1 TAGGTGATTCGA
98580939 CGTAGTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.32, T:0.32
Consensus pattern (13 bp):
TAGGTGATTCGAA
Found at i:98585863 original size:14 final size:16
Alignment explanation
Indices: 98585849--98585880 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
98585839 GATATATTAT
98585849 ATTTTT-TAAAATATA
1 ATTTTTATAAAATATA
98585864 ATTTTTATAAAA-ATA
1 ATTTTTATAAAATATA
98585879 AT
1 AT
98585881 AATATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTTTTATAAAATATA
Found at i:98587537 original size:9 final size:9
Alignment explanation
Indices: 98587519--98587605 Score: 88
Period size: 9 Copynumber: 9.7 Consensus size: 9
98587509 GAAAATGGGA
*
98587519 CCAGGTGGG
1 CCAGGAGGG
98587528 CCAGGAGGG
1 CCAGGAGGG
*
98587537 CCACCG-GGG
1 CCA-GGAGGG
* *
98587546 CCAGGTGGA
1 CCAGGAGGG
98587555 CCAGGAGGG
1 CCAGGAGGG
98587564 CCAGGAGGG
1 CCAGGAGGG
**
98587573 CCTCCG-GGG
1 CC-AGGAGGG
98587582 CCAGGAGGG
1 CCAGGAGGG
98587591 CCAGGAGGG
1 CCAGGAGGG
98587600 CCAGGA
1 CCAGGA
98587606 TGGGGCGGTC
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
8 2 0.03
9 60 0.94
10 2 0.03
ACGTcount: A:0.18, C:0.28, G:0.51, T:0.03
Consensus pattern (9 bp):
CCAGGAGGG
Found at i:98587565 original size:36 final size:36
Alignment explanation
Indices: 98587516--98587605 Score: 144
Period size: 36 Copynumber: 2.5 Consensus size: 36
98587506 GGAGAAAATG
* *
98587516 GGACCAGGTGGGCCAGGAGGGCCACCGGGGCCAGGT
1 GGACCAGGAGGGCCAGGAGGGCCACCGGGGCCAGGA
*
98587552 GGACCAGGAGGGCCAGGAGGGCCTCCGGGGCCAGGA
1 GGACCAGGAGGGCCAGGAGGGCCACCGGGGCCAGGA
*
98587588 GGGCCAGGAGGGCCAGGA
1 GGACCAGGAGGGCCAGGA
98587606 TGGGGCGGTC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.19, C:0.27, G:0.51, T:0.03
Consensus pattern (36 bp):
GGACCAGGAGGGCCAGGAGGGCCACCGGGGCCAGGA
Found at i:98587749 original size:39 final size:39
Alignment explanation
Indices: 98587591--98587736 Score: 210
Period size: 39 Copynumber: 3.8 Consensus size: 39
98587581 GCCAGGAGGG
98587591 CCAGGAGGGCCA---GGATGGGGCGGTCCTCCACCCGGA
1 CCAGGAGGGCCACCGGGATGGGGCGGTCCTCCACCCGGA
*
98587627 CCAGGAGGGCCACCAGGATGGGGCGGTCCTCCACCCGGA
1 CCAGGAGGGCCACCGGGATGGGGCGGTCCTCCACCCGGA
* *
98587666 CCAGGAGGGCCACCGGGATGGGGGGGTCCTCCTCCCGGA
1 CCAGGAGGGCCACCGGGATGGGGCGGTCCTCCACCCGGA
* *
98587705 CCAGG-GGGACCACCGGGGTGGGGCGGCCCTCC
1 CCAGGAGGG-CCACCGGGATGGGGCGGTCCTCC
98587737 GGTCGGACCA
Statistics
Matches: 100, Mismatches: 6, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
36 12 0.12
38 3 0.03
39 85 0.85
ACGTcount: A:0.14, C:0.35, G:0.42, T:0.08
Consensus pattern (39 bp):
CCAGGAGGGCCACCGGGATGGGGCGGTCCTCCACCCGGA
Found at i:98593328 original size:7 final size:7
Alignment explanation
Indices: 98593318--98593348 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
98593308 GTTTTAAGTC
98593318 TTGAATT
1 TTGAATT
98593325 TTGAATT
1 TTGAATT
98593332 TTGAATT
1 TTGAATT
*
98593339 TTGAGTT
1 TTGAATT
98593346 TTG
1 TTG
98593349 TGTCTTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.58
Consensus pattern (7 bp):
TTGAATT
Found at i:98595237 original size:24 final size:23
Alignment explanation
Indices: 98595210--98595267 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 23
98595200 CATACTAATG
*
98595210 AATAGAAATATTTTTTATAAATA-T
1 AATA-AAATATTTATT-TAAATATT
98595234 AATAAATTATATTTATTTAAATATT
1 AATAAA--ATATTTATTTAAATATT
98595259 AATAAAATA
1 AATAAAATA
98595268 AGTGTTTTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
23 5 0.17
24 10 0.33
25 15 0.50
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
AATAAAATATTTATTTAAATATT
Found at i:98595246 original size:25 final size:25
Alignment explanation
Indices: 98595217--98595264 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
98595207 ATGAATAGAA
*
98595217 ATATTTTTTATAAATA-TAATAAATT
1 ATATTTATT-TAAATATTAATAAATT
98595242 ATATTTATTTAAATATTAATAAA
1 ATATTTATTTAAATATTAATAAA
98595265 ATAAGTGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
ATATTTATTTAAATATTAATAAATT
Found at i:98596667 original size:19 final size:21
Alignment explanation
Indices: 98596623--98596669 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 21
98596613 ATTGAGTGGT
98596623 TAATTAGACTTTAATTAAGTA
1 TAATTAGACTTTAATTAAGTA
*
98596644 AAATTAG-C-TTAATTAAG-A
1 TAATTAGACTTTAATTAAGTA
98596662 GTAATTAG
1 -TAATTAG
98596670 TGGAAAGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.04
19 15 0.65
20 1 0.04
21 6 0.26
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (21 bp):
TAATTAGACTTTAATTAAGTA
Found at i:98596869 original size:21 final size:22
Alignment explanation
Indices: 98596839--98596879 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
98596829 TATTATTATT
*
98596839 ATATTGTAAT-TTATATTAATG
1 ATATTATAATATTATATTAATG
*
98596860 ATATTATAATATTATTTTAA
1 ATATTATAATATTATATTAA
98596880 CAATTGTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (22 bp):
ATATTATAATATTATATTAATG
Found at i:98596935 original size:24 final size:23
Alignment explanation
Indices: 98596907--98596954 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
98596897 TAAATACATG
*
98596907 TGTAATA-AATTAAATACATATACT
1 TGTAATACAACTAAATA-AT-TACT
98596931 TGTAATACAACTAAATAATTACT
1 TGTAATACAACTAAATAATTACT
98596954 T
1 T
98596955 AAAATATAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 5 0.23
24 9 0.41
25 8 0.36
ACGTcount: A:0.48, C:0.10, G:0.04, T:0.38
Consensus pattern (23 bp):
TGTAATACAACTAAATAATTACT
Found at i:98596996 original size:5 final size:5
Alignment explanation
Indices: 98596972--98597017 Score: 56
Period size: 5 Copynumber: 8.6 Consensus size: 5
98596962 AAGAAATTGT
*
98596972 TATTA TATGA TATTA TTATTA TATTA TATTATA TATTA TATTA TAT
1 TATTA TATTA TATTA -TATTA TATTA TA-T-TA TATTA TATTA TAT
98597018 AAATAAGTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
5 25 0.69
6 7 0.19
7 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:98597090 original size:29 final size:30
Alignment explanation
Indices: 98597048--98597110 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
98597038 GAAACAGAAT
*
98597048 GAAAGCAAACGAAACAGAG-AAGAACAGGGA
1 GAAAGCAAACGAAACAAAGAAAGAA-AGGGA
* *
98597078 GAAAG-AAATGAAAGAAAGAAAGAAAGGGA
1 GAAAGCAAACGAAACAAAGAAAGAAAGGGA
98597107 GAAA
1 GAAA
98597111 AGGGAAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 19 0.66
30 10 0.34
ACGTcount: A:0.62, C:0.06, G:0.30, T:0.02
Consensus pattern (30 bp):
GAAAGCAAACGAAACAAAGAAAGAAAGGGA
Found at i:98598351 original size:15 final size:15
Alignment explanation
Indices: 98598303--98598352 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
98598293 TTTATCAAAT
*
98598303 TTATATTGACTGAAA
1 TTATATTGATTGAAA
* * *
98598318 TCATTTTGATTGAAT
1 TTATATTGATTGAAA
98598333 TTATATTGATTGAAA
1 TTATATTGATTGAAA
98598348 TTATA
1 TTATA
98598353 ATATATATAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.36, C:0.04, G:0.12, T:0.48
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:98598853 original size:29 final size:27
Alignment explanation
Indices: 98598795--98598891 Score: 80
Period size: 27 Copynumber: 3.6 Consensus size: 27
98598785 AATGCCTTAT
*
98598795 TGGTGTGTTTGGGAGGATATGATATAC
1 TGGTGTGTTTGGGAGGATATAATATAC
*
98598822 TGGTGTGTTAT-GGAGGATTTATAATATTC
1 TGGTGTGTT-TGGGAGGA--TATAATATAC
*
98598851 TGGGTGTGTTTGGGTTGG--AT-AT-T-C
1 T-GGTGTGTTTGGG-AGGATATAATATAC
98598875 TGGTGTGTTTGGGAGGA
1 TGGTGTGTTTGGGAGGA
98598892 ATCCGCGTAT
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
22 2 0.03
23 12 0.20
24 2 0.03
25 1 0.02
26 2 0.03
27 17 0.29
28 1 0.02
29 10 0.17
30 10 0.17
31 2 0.03
ACGTcount: A:0.18, C:0.03, G:0.38, T:0.41
Consensus pattern (27 bp):
TGGTGTGTTTGGGAGGATATAATATAC
Found at i:98606952 original size:3 final size:3
Alignment explanation
Indices: 98606938--98606973 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
98606928 TCATAAGCTG
*
98606938 CCT CCT CTT CCT CCT CCT CCT CCT CCT CCT CCT CCT
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
98606974 TCTTATCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (3 bp):
CCT
Found at i:98611938 original size:4 final size:4
Alignment explanation
Indices: 98611924--98611966 Score: 59
Period size: 4 Copynumber: 10.8 Consensus size: 4
98611914 GTAGGGACGA
* * *
98611924 ATAC GTAC ATAC ATAC ATAC ATAC ATTC ATAC ATAT ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
98611967 TACATATATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (4 bp):
ATAC
Found at i:98622725 original size:37 final size:38
Alignment explanation
Indices: 98622674--98622746 Score: 98
Period size: 38 Copynumber: 1.9 Consensus size: 38
98622664 CTACATTGTA
*
98622674 ACTAAAGACATCCTT-ATTCTTTGAT-TTATATTCAAGG
1 ACTAAAGACATCCTTAATTCTTAGATATT-TATTCAAGG
98622711 ACTAAAGA-AGTCCTTAATTCTTAGATATTTATTCAA
1 ACTAAAGACA-TCCTTAATTCTTAGATATTTATTCAA
98622747 TAAAAGTAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 1 0.03
37 13 0.41
38 16 0.50
39 2 0.06
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.40
Consensus pattern (38 bp):
ACTAAAGACATCCTTAATTCTTAGATATTTATTCAAGG
Found at i:98624024 original size:21 final size:20
Alignment explanation
Indices: 98623991--98624030 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
98623981 CTAGTATTTT
98623991 TAAGCTTTGTTTTTGTTCATG
1 TAAGCTTTGTTTTT-TTCATG
* *
98624012 TAAGTTTTTTTTTTTTCAT
1 TAAGCTTTGTTTTTTTCAT
98624031 TTACTTATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.15, C:0.07, G:0.12, T:0.65
Consensus pattern (20 bp):
TAAGCTTTGTTTTTTTCATG
Found at i:98626040 original size:17 final size:17
Alignment explanation
Indices: 98626012--98626086 Score: 52
Period size: 18 Copynumber: 4.4 Consensus size: 17
98626002 TGTATCTTAT
98626012 TTATATATATTTTTATGC
1 TTATA-ATATTTTTATGC
98626030 TTATAATATTTTATAT--
1 TTATAATATTTT-TATGC
*
98626046 TTCA-AATTTTTTTATGC
1 TT-ATAATATTTTTATGC
98626063 ATTA-ACATATTTTT-TGC
1 -TTATA-ATATTTTTATGC
98626080 TATATAA
1 T-TATAA
98626087 CTCAAAAACT
Statistics
Matches: 47, Mismatches: 2, Indels: 17
0.71 0.03 0.26
Matches are distributed among these distances:
15 3 0.06
16 10 0.21
17 16 0.34
18 18 0.38
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (17 bp):
TTATAATATTTTTATGC
Found at i:98628338 original size:22 final size:24
Alignment explanation
Indices: 98628312--98628357 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
98628302 TCTTTTATTA
98628312 ATTA-TAAAAT-ATAAAAATATAT
1 ATTATTAAAATAATAAAAATATAT
*
98628334 ATTATTAAAATAATAAAATTATAT
1 ATTATTAAAATAATAAAAATATAT
98628358 TTTTATCGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.19
23 6 0.29
24 11 0.52
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (24 bp):
ATTATTAAAATAATAAAAATATAT
Found at i:98628358 original size:22 final size:21
Alignment explanation
Indices: 98628308--98628358 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
98628298 AAATTCTTTT
98628308 ATTA-ATTATAAAATATAAAA
1 ATTATATTATAAAATATAAAA
98628328 ATATATATTATTAAAATA-ATAAA
1 AT-TATATTA-TAAAATATA-AAA
98628351 ATTATATT
1 ATTATATT
98628359 TTTATCGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
20 2 0.07
21 2 0.07
22 11 0.41
23 12 0.44
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTATATTATAAAATATAAAA
Found at i:98630840 original size:25 final size:25
Alignment explanation
Indices: 98630812--98630859 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
98630802 ATCAAAACCC
98630812 ATCTCCTAT-TTTCTATAAAGTTTCA
1 ATCT-CTATGTTTCTATAAAGTTTCA
* *
98630837 ATCTTTTTGTTTCTATAAAGTTT
1 ATCTCTATGTTTCTATAAAGTTT
98630860 TTGTTGTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.25, C:0.15, G:0.06, T:0.54
Consensus pattern (25 bp):
ATCTCTATGTTTCTATAAAGTTTCA
Found at i:98630928 original size:3 final size:3
Alignment explanation
Indices: 98630920--98630953 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
98630910 TACAAAAAAG
98630920 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
98630954 AACAGAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:98634598 original size:29 final size:26
Alignment explanation
Indices: 98634538--98634595 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
98634528 TTACAACTTC
*
98634538 TTTTTTCTTCTTCACCATTATTTTCA
1 TTTTATCTTCTTCACCATTATTTTCA
98634564 TTTTATCTTCTTCACCATTATTTTCA
1 TTTTATCTTCTTCACCATTATTTTCA
98634590 TTTTAT
1 TTTTAT
98634596 TATATTCAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.17, C:0.21, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTTATCTTCTTCACCATTATTTTCA
Found at i:98634603 original size:26 final size:26
Alignment explanation
Indices: 98634538--98634603 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
98634528 TTACAACTTC
* *
98634538 TTTTTTCTTCTTCACCATTATTTTCA
1 TTTTATCTTATTCACCATTATTTTCA
*
98634564 TTTTATCTTCTTCACCATTATTTTCA
1 TTTTATCTTATTCACCATTATTTTCA
98634590 TTTTAT-TATATTCA
1 TTTTATCT-TATTCA
98634604 ACAGCAAAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 1 0.03
26 36 0.97
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.61
Consensus pattern (26 bp):
TTTTATCTTATTCACCATTATTTTCA
Found at i:98635812 original size:16 final size:17
Alignment explanation
Indices: 98635781--98635814 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
98635771 AAAAATACAC
*
98635781 TATATTTGACATATAAT
1 TATATTAGACATATAAT
98635798 TATATTAGA-ATATAAT
1 TATATTAGACATATAAT
98635814 T
1 T
98635815 TAATTTGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (17 bp):
TATATTAGACATATAAT
Found at i:98637360 original size:21 final size:20
Alignment explanation
Indices: 98637336--98637383 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
98637326 TTTAAGATTT
98637336 AAAGATTAAGGTTTAGAGCTA
1 AAAGATTAAGGTTTAGAG-TA
**
98637357 AAAG-TTTGGGTTTAGAGTA
1 AAAGATTAAGGTTTAGAGTA
*
98637376 AAAAATTA
1 AAAGATTA
98637384 TCAAAATTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 5 0.23
20 13 0.59
21 4 0.18
ACGTcount: A:0.44, C:0.02, G:0.23, T:0.31
Consensus pattern (20 bp):
AAAGATTAAGGTTTAGAGTA
Found at i:98643534 original size:26 final size:25
Alignment explanation
Indices: 98643472--98643553 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 25
98643462 TTGTGATAAA
*
98643472 TTTAAATTTAAATCTTAATATTTATTT
1 TTTAAA-TTAAAT-TTGATATTTATTT
98643499 TTT--ATT-AATTTGATATTTATTT
1 TTTAAATTAAATTTGATATTTATTT
*
98643521 TTTAAAGTTAAATTTGATTATTAATTT
1 TTTAAA-TTAAATTTGA-TATTTATTT
98643548 TTTAAA
1 TTTAAA
98643554 AAGAGTTAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
22 15 0.31
23 3 0.06
24 3 0.06
25 3 0.06
26 7 0.15
27 17 0.35
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (25 bp):
TTTAAATTAAATTTGATATTTATTT
Found at i:98654727 original size:83 final size:84
Alignment explanation
Indices: 98654634--98654806 Score: 330
Period size: 84 Copynumber: 2.1 Consensus size: 84
98654624 TAATTGTAAT
98654634 TATTATAATTTTATCTTTAATATTAATAA-TTGAAATTAATAATAAACATGAAACCTGTTTGTTA
1 TATTATAATTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTTTGTTA
98654698 AGTATTAATGTTGATATAA
66 AGTATTAATGTTGATATAA
98654717 TATTATAATTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTTTGTTA
1 TATTATAATTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTTTGTTA
98654782 AGTATTAATGTTGATATAA
66 AGTATTAATGTTGATATAA
*
98654801 TTTTAT
1 TATTAT
98654807 GTGGAGAGAA
Statistics
Matches: 88, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
83 29 0.33
84 59 0.67
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (84 bp):
TATTATAATTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTTTGTTA
AGTATTAATGTTGATATAA
Found at i:98655023 original size:112 final size:113
Alignment explanation
Indices: 98654873--98655147 Score: 497
Period size: 113 Copynumber: 2.5 Consensus size: 113
98654863 TATACGTAAA
98654873 AATTAT-CATACA-CAACAATGTTTTTTA-GGTAAATAACATTAAACCAACAATTATACATACAC
1 AATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
*
98654935 CAACAATGTTTTTTAGGGT-AATAACATTAACCAACAATTAAACCAAC
66 CAACAATGTTTTTTAGGGTAAATAACATTAAACAACAATTAAACCAAC
98654982 AATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
1 AATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
98655047 CAACAATGTTTTTTAGGGTAAATAACATTAAACAACAATTAAACCAAC
66 CAACAATGTTTTTTAGGGTAAATAACATTAAACAACAATTAAACCAAC
98655095 AATTATACATACACCAACAATGTTTTTTAGGG-ACAATAACATTAAACCAACAA
1 AATTATACATACACCAACAATGTTTTTTAGGGTA-AATAACATTAAACCAACAA
98655148 GTAATTTTAG
Statistics
Matches: 160, Mismatches: 1, Indels: 6
0.96 0.01 0.04
Matches are distributed among these distances:
109 6 0.04
110 6 0.04
111 15 0.09
112 55 0.34
113 78 0.49
ACGTcount: A:0.47, C:0.18, G:0.07, T:0.28
Consensus pattern (113 bp):
AATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
CAACAATGTTTTTTAGGGTAAATAACATTAAACAACAATTAAACCAAC
Found at i:98655047 original size:51 final size:51
Alignment explanation
Indices: 98654971--98655147 Score: 239
Period size: 51 Copynumber: 3.3 Consensus size: 51
98654961 TTAACCAACA
98654971 ATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGTAAATAAC
1 ATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGTAAATAAC
98655022 ATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACAAC
1 ATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGG----TAA-A-T----AAC
98655083 AATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGG-ACAATAAC
1 -ATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGTA-AATAAC
98655135 ATTAAACCAACAA
1 ATTAAACCAACAA
98655148 GTAATTTTAG
Statistics
Matches: 114, Mismatches: 0, Indels: 24
0.83 0.00 0.17
Matches are distributed among these distances:
51 56 0.49
52 3 0.03
55 3 0.03
56 2 0.02
57 3 0.03
58 1 0.01
61 3 0.03
62 43 0.38
ACGTcount: A:0.47, C:0.19, G:0.07, T:0.27
Consensus pattern (51 bp):
ATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGTAAATAAC
Found at i:98655095 original size:62 final size:62
Alignment explanation
Indices: 98655014--98655147 Score: 227
Period size: 62 Copynumber: 2.2 Consensus size: 62
98655004 TTTTTTAGGG
*
98655014 TAAATAAC-ATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGTA-AATAACAT
1 TAAACAACAATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGG-ACAATAACAT
98655075 TAAACAACAATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGACAATAACAT
1 TAAACAACAATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGACAATAACAT
98655137 TAAACCAACAA
1 TAAA-CAACAA
98655148 GTAATTTTAG
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
61 8 0.12
62 55 0.80
63 6 0.09
ACGTcount: A:0.49, C:0.19, G:0.06, T:0.26
Consensus pattern (62 bp):
TAAACAACAATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGACAATAACAT
Found at i:98655156 original size:33 final size:34
Alignment explanation
Indices: 98655093--98655203 Score: 115
Period size: 33 Copynumber: 3.4 Consensus size: 34
98655083 AATTAAACCA
* *
98655093 ACAATTATACATACACCAACAATGT-TTTTTAGGG
1 ACAATTATACATAAACCAACAA-GTAATTTTAGGG
98655127 ACAA-TA-ACATTAAACCAACAAGTAATTTTA-GG
1 ACAATTATACA-TAAACCAACAAGTAATTTTAGGG
* * *
98655159 TCAATTATACATACACCAACAATTAATTTTA-GG
1 ACAATTATACATAAACCAACAAGTAATTTTAGGG
*
98655192 TCAATTATACAT
1 ACAATTATACAT
98655204 GCTTTATAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
32 10 0.15
33 51 0.75
34 7 0.10
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (34 bp):
ACAATTATACATAAACCAACAAGTAATTTTAGGG
Found at i:98658360 original size:119 final size:119
Alignment explanation
Indices: 98658223--98659321 Score: 2040
Period size: 119 Copynumber: 9.2 Consensus size: 119
98658213 TTTTCAAGTT
98658223 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
98658288 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
98658342 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
98658407 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
98658461 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
98658526 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
98658580 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
98658645 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
98658699 ATATATTTAATAATAATTATGTTAATTTATA-TTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
98658763 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTT-TTTAAATTATATAGTTTAATTAAA
98658818 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
98658883 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
*
98658938 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* * *
98659003 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTT-TTTAAATTATATAGTTTAATTAAA
*
98659059 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
98659124 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
98659179 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
98659244 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
98659299 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
98659322 TAAATATGAT
Statistics
Matches: 963, Mismatches: 9, Indels: 15
0.98 0.01 0.02
Matches are distributed among these distances:
118 63 0.07
119 444 0.46
120 340 0.35
121 114 0.12
122 2 0.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (119 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
Found at i:98658937 original size:18 final size:17
Alignment explanation
Indices: 98658909--98658943 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98658899 ATTATTAAGA
*
98658909 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
98658926 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
98658944 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:98659178 original size:18 final size:17
Alignment explanation
Indices: 98659150--98659184 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98659140 ATTATTAAGA
*
98659150 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
98659167 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
98659185 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:98659298 original size:18 final size:17
Alignment explanation
Indices: 98659270--98659304 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98659260 ATTATTAAGA
*
98659270 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
98659287 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
98659305 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:98659591 original size:16 final size:17
Alignment explanation
Indices: 98659540--98659609 Score: 117
Period size: 17 Copynumber: 4.2 Consensus size: 17
98659530 GATTAGCTAT
98659540 TACACCTCTAATCCCAA
1 TACACCTCTAATCCCAA
98659557 TACACCTCTAATCCCAA
1 TACACCTCTAATCCCAA
98659574 TACACCTCTAAT-CCAA
1 TACACCTCTAATCCCAA
*
98659590 TACGCCTCTAAT-CCAA
1 TACACCTCTAATCCCAA
98659606 TACA
1 TACA
98659610 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
16 22 0.43
17 29 0.57
ACGTcount: A:0.36, C:0.39, G:0.01, T:0.24
Consensus pattern (17 bp):
TACACCTCTAATCCCAA
Found at i:98659598 original size:33 final size:33
Alignment explanation
Indices: 98659540--98659609 Score: 115
Period size: 33 Copynumber: 2.1 Consensus size: 33
98659530 GATTAGCTAT
98659540 TACACCTCTAATCCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCCAATACACCTCTAAT-CCAA
*
98659574 TACACCTCTAAT-CCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCCAATACACCTCTAATCCAA
98659606 TACA
1 TACA
98659610 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
32 8 0.23
33 15 0.43
34 12 0.34
ACGTcount: A:0.36, C:0.39, G:0.01, T:0.24
Consensus pattern (33 bp):
TACACCTCTAATCCCAATACACCTCTAATCCAA
Found at i:98659791 original size:50 final size:50
Alignment explanation
Indices: 98659730--98659979 Score: 439
Period size: 50 Copynumber: 5.0 Consensus size: 50
98659720 AAACCATTTG
* *
98659730 ATATATTTAAATATTAATTTAAATATAATTAATAAATAAGTTTAAATAAA
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
98659780 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
98659830 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
*
98659880 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATGAA
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
98659930 ATATATTTAAATATTAGTTTAAATAGAATTAAATGAAATATA-TTTAAATA
1 ATATATTTAAATATTAGTTTAAATAGAATT-AAT-AAATA-AGTTTAAATA
98659980 TTAGTTTAAA
Statistics
Matches: 193, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
50 177 0.92
51 3 0.02
52 12 0.06
53 1 0.01
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.41
Consensus pattern (50 bp):
ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
Found at i:98659810 original size:15 final size:14
Alignment explanation
Indices: 98659760--98660097 Score: 76
Period size: 15 Copynumber: 26.6 Consensus size: 14
98659750 AAATATAATT
*
98659760 AATAAATAAGTTTA
1 AATAAATTAGTTTA
98659774 AATAAAATATA-TTTA
1 AAT-AAAT-TAGTTTA
98659789 AAT--ATTAGTTTA
1 AATAAATTAGTTTA
*
98659801 AATAGA--A--TT-
1 AATAAATTAGTTTA
*
98659810 AATAAATAAGTTTA
1 AATAAATTAGTTTA
98659824 AATAAAATATA-TTTA
1 AAT-AAAT-TAGTTTA
98659839 AAT--ATTAGTTTA
1 AATAAATTAGTTTA
*
98659851 AATAGA--A--TT-
1 AATAAATTAGTTTA
*
98659860 AATAAATAAGTTTA
1 AATAAATTAGTTTA
98659874 AATAAAATATA-TTTA
1 AAT-AAAT-TAGTTTA
98659889 AAT--ATTAGTTTA
1 AATAAATTAGTTTA
*
98659901 AATAGA--A--TT-
1 AATAAATTAGTTTA
*
98659910 AATAAATAAGTTTA
1 AATAAATTAGTTTA
98659924 AATGAAATATA-TTTA
1 AAT-AAAT-TAGTTTA
98659939 AAT--ATTAGTTTA
1 AATAAATTAGTTTA
*
98659951 AATAGA--A--TTA
1 AATAAATTAGTTTA
98659961 AATGAAATATA-TTTA
1 AAT-AAAT-TAGTTTA
98659976 AAT--ATTAGTTTA
1 AATAAATTAGTTTA
*
98659988 AATAGA--A--TT-
1 AATAAATTAGTTTA
*
98659997 AATAAATAAGTTTA
1 AATAAATTAGTTTA
98660011 AATGAAATATA-TTTA
1 AAT-AAAT-TAGTTTA
98660026 AAT--ATTAGTTTA
1 AATAAATTAGTTTA
*
98660038 AATAGA--A--TT-
1 AATAAATTAGTTTA
98660047 AAT-AATTAAGTTTA
1 AATAAATT-AGTTTA
98660061 AATAAAATATA-TTTA
1 AAT-AAAT-TAGTTTA
98660076 AAT--ATTAGTTTA
1 AATAAATTAGTTTA
98660088 AATAGAATTA
1 AATA-AATTA
98660098 ATAAATATAT
Statistics
Matches: 247, Mismatches: 11, Indels: 131
0.63 0.03 0.34
Matches are distributed among these distances:
8 1 0.00
9 23 0.09
10 16 0.06
11 21 0.09
12 69 0.28
13 10 0.04
14 25 0.10
15 72 0.29
16 9 0.04
17 1 0.00
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (14 bp):
AATAAATTAGTTTA
Found at i:98659851 original size:100 final size:100
Alignment explanation
Indices: 98659730--98660114 Score: 554
Period size: 100 Copynumber: 4.0 Consensus size: 100
98659720 AAACCATTTG
* *
98659730 ATATATTTAAATATTAATTTAAATATAATTAATAAATAAGTTTAAATAAAATATATTTAAATATT
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAAATATT
98659795 AGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
66 AGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
98659830 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAAATATT
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAAATATT
*
98659895 AGTTTAAATAGAATTAATAAATAAGTTTAAATGAA
66 AGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
98659930 ATATATTTAAATATTAGTTTAAATAGAATTAAATGAAATATA-TTTAAAT---AT-TAGTTT-AA
1 ATATATTTAAATATTAGTTTAAATAGAATT-AAT-AAATA-AGTTTAAATAAAATATA-TTTAAA
*
98659989 -A-TAG---------AATTAATAAATAAGTTTAAATGAA
62 TATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
*
98660017 ATATATTTAAATATTAGTTTAAATAGAATTAATAATTAAGTTTAAATAAAATATATTTAAATATT
1 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAAATATT
98660082 AGTTTAAATAGAATTAATAAATATA-TTTAAATA
66 AGTTTAAATAGAATTAATAAATA-AGTTTAAATA
98660115 TTAGTTTAAA
Statistics
Matches: 258, Mismatches: 5, Indels: 44
0.84 0.02 0.14
Matches are distributed among these distances:
84 1 0.00
85 11 0.04
86 3 0.01
87 54 0.21
88 5 0.02
89 4 0.02
90 1 0.00
91 3 0.01
96 3 0.01
97 1 0.00
98 4 0.02
99 5 0.02
100 146 0.57
101 4 0.02
102 12 0.05
103 1 0.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (100 bp):
ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAAATATT
AGTTTAAATAGAATTAATAAATAAGTTTAAATAAA
Found at i:98659962 original size:37 final size:35
Alignment explanation
Indices: 98659935--98660013 Score: 124
Period size: 37 Copynumber: 2.2 Consensus size: 35
98659925 ATGAAATATA
98659935 TTTAAATATTAGTTTAAATAGAATTAAATGAAATATA-
1 TTTAAATATTAGTTTAAATAGAATT-AAT-AAATA-AG
98659972 TTTAAATATTAGTTTAAATAGAATTAATAAATAAG
1 TTTAAATATTAGTTTAAATAGAATTAATAAATAAG
98660007 TTTAAAT
1 TTTAAAT
98660014 GAAATATATT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
34 1 0.02
35 12 0.29
36 3 0.07
37 25 0.61
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.42
Consensus pattern (35 bp):
TTTAAATATTAGTTTAAATAGAATTAATAAATAAG
Found at i:98659969 original size:87 final size:87
Alignment explanation
Indices: 98659871--98660048 Score: 347
Period size: 87 Copynumber: 2.0 Consensus size: 87
98659861 ATAAATAAGT
98659871 TTAAATAAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATGAAATATAT
1 TTAAATAAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATGAAATATAT
98659936 TTAAATATTAGTTTAAATAGAA
66 TTAAATATTAGTTTAAATAGAA
*
98659958 TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATGAAATATAT
1 TTAAATAAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATGAAATATAT
98660023 TTAAATATTAGTTTAAATAGAA
66 TTAAATATTAGTTTAAATAGAA
98660045 TTAA
1 TTAA
98660049 TAATTAAGTT
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 90 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.40
Consensus pattern (87 bp):
TTAAATAAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATGAAATATAT
TTAAATATTAGTTTAAATAGAA
Found at i:98659981 original size:187 final size:187
Alignment explanation
Indices: 98659771--98660113 Score: 643
Period size: 187 Copynumber: 1.8 Consensus size: 187
98659761 ATAAATAAGT
98659771 TTAAATAAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATAT
1 TTAAATAAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATAT
98659836 TTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAAATATTAGTTTA
66 TTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAAATATTAGTTTA
98659901 AATAGAATTAATAAATA-AGTTTAAATGAAATATATTTAAATATTAGTTTAAATAGAA
131 AATAGAATTAATAAATATA-TTTAAATGAAATATATTTAAATATTAGTTTAAATAGAA
* *
98659958 TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATGAAATATAT
1 TTAAATAAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATAT
*
98660023 TTAAATATTAGTTTAAATAGAATTAATAATTAAGTTTAAATAAAATATATTTAAATATTAGTTTA
66 TTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAAATATTAGTTTA
98660088 AATAGAATTAATAAATATATTTAAAT
131 AATAGAATTAATAAATATATTTAAAT
98660114 ATTAGTTTAA
Statistics
Matches: 152, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
187 151 0.99
188 1 0.01
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (187 bp):
TTAAATAAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATAT
TTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAAATATTAGTTTA
AATAGAATTAATAAATATATTTAAATGAAATATATTTAAATATTAGTTTAAATAGAA
Found at i:98660003 original size:50 final size:50
Alignment explanation
Indices: 98659958--98660113 Score: 278
Period size: 50 Copynumber: 3.1 Consensus size: 50
98659948 TTAAATAGAA
98659958 TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGT
1 TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGT
*
98660008 TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATTAATAATTAAGT
1 TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGT
*
98660058 TTAAATAAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATATA-T
1 TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATA-AGT
98660108 TTAAAT
1 TTAAAT
98660114 ATTAGTTTAA
Statistics
Matches: 102, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
50 101 0.99
51 1 0.01
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (50 bp):
TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGT
Found at i:98660012 original size:23 final size:24
Alignment explanation
Indices: 98659974--98660114 Score: 146
Period size: 23 Copynumber: 5.7 Consensus size: 24
98659964 GAAATATATT
98659974 TAAATATTAGTTTAAATAGAATTAA
1 TAAATA-TAGTTTAAATAGAATTAA
*
98659999 TAAATA-AGTTTAAAT-GAAATATATT
1 TAAATATAGTTTAAATAG-AAT-TA-A
98660024 TAAATATTAGTTTAAATAGAATTAA
1 TAAATA-TAGTTTAAATAGAATTAA
* * *
98660049 TAATTA-AGTTTAAATAAAATATATT
1 TAAATATAGTTTAAATAGAAT-TA-A
98660074 TAAATATTAGTTTAAATAGAATTAA
1 TAAATA-TAGTTTAAATAGAATTAA
98660099 TAAATATA-TTTAAATA
1 TAAATATAGTTTAAATA
98660115 TTAGTTTAAA
Statistics
Matches: 98, Mismatches: 8, Indels: 22
0.77 0.06 0.17
Matches are distributed among these distances:
22 1 0.01
23 33 0.34
24 6 0.06
25 28 0.29
26 4 0.04
27 25 0.26
28 1 0.01
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.41
Consensus pattern (24 bp):
TAAATATAGTTTAAATAGAATTAA
Found at i:98660090 original size:87 final size:86
Alignment explanation
Indices: 98659871--98660126 Score: 330
Period size: 87 Copynumber: 3.0 Consensus size: 86
98659861 ATAAATAAGT
*
98659871 TTAAATAAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATGAAATATAT
1 TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATT-ATAAATAAGTTTAAATGAAATATAT
98659936 TTAAATATTAGTTTAAATAGAA
65 TTAAATATTAGTTTAAATAGAA
98659958 TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATGAAATATAT
1 TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATT-ATAAATAAGTTTAAATGAAATATAT
98660023 TTAAATATTAGTTTAAATAGAA
65 TTAAATATTAGTTTAAATAGAA
* * * *
98660045 TT-AAT-AATTA-AGTTTAAATAAAATATA-TTTAAATATTAGTT-TAAAT-AGAATT-AAT-AA
1 TTAAATGAAATATA-TTTAAAT---AT-TAGTTTAAATA-GAATTATAAATAAG-TTTAAATGAA
98660102 ATATATTTAAATATTAGTTTAAATA
59 ATATATTTAAATATTAGTTTAAATA
98660127 AAATGATTTT
Statistics
Matches: 157, Mismatches: 5, Indels: 16
0.88 0.03 0.09
Matches are distributed among these distances:
84 1 0.01
85 38 0.24
86 8 0.05
87 95 0.61
88 10 0.06
89 5 0.03
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (86 bp):
TTAAATGAAATATATTTAAATATTAGTTTAAATAGAATTATAAATAAGTTTAAATGAAATATATT
TAAATATTAGTTTAAATAGAA
Found at i:98664500 original size:43 final size:43
Alignment explanation
Indices: 98664402--98664516 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
98664392 TTTGTAATAG
*
98664402 AAGCGCCGCTAAAGTTCATGATTTTTAGCAACGTTTATGGTAA
1 AAGCGCCGCTAAAGATCATGATTTTTAGCAACGTTTATGGTAA
* * * *
98664445 AA-CTGCCGCTAAAGGTCATGATTTTTAGTAGCGTTTGT-GTGAA
1 AAGC-GCCGCTAAAGATCATGATTTTTAGCAACGTTTATGGT-AA
* * *
98664488 AAGCGCCTCTAAAGACCATGATCTTTAGC
1 AAGCGCCGCTAAAGATCATGATTTTTAGC
98664517 GGCATTTGTG
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 3 0.05
43 56 0.93
44 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (43 bp):
AAGCGCCGCTAAAGATCATGATTTTTAGCAACGTTTATGGTAA
Found at i:98668067 original size:46 final size:46
Alignment explanation
Indices: 98667960--98668127 Score: 288
Period size: 46 Copynumber: 3.7 Consensus size: 46
98667950 TACGTATGAT
* *
98667960 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
98668003 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
98668049 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
98668095 CACTTATCACTTTGTCACTTGATCAGATAAGTG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTG
98668128 ATAAGTGATC
Statistics
Matches: 118, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
43 10 0.08
44 5 0.04
45 20 0.17
46 83 0.70
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:98669150 original size:49 final size:47
Alignment explanation
Indices: 98669047--98669163 Score: 128
Period size: 47 Copynumber: 2.4 Consensus size: 47
98669037 GATTTCCGTA
* * * *
98669047 TAAGACCATATCTGGGATATGGCATCAGTGTGATATGTGCTACAGTG
1 TAAGACCATAGCTGGGCTATGACATCAGTATGATATGTGCTACAGTG
* *
98669094 TAAGACCATAGCTGGGCTATGACATCAGTATGTATTATGTGATTA-TGTG
1 TAAGACCATAGCTGGGCTATGACATCAGTATG-A-TATGTG-CTACAGTG
* *
98669143 TAAGACCATAGTTGGACTATG
1 TAAGACCATAGCTGGGCTATG
98669164 GCATTAAGAA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 28 0.47
48 1 0.02
49 28 0.47
50 2 0.03
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.32
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGACATCAGTATGATATGTGCTACAGTG
Found at i:98673188 original size:46 final size:46
Alignment explanation
Indices: 98673132--98673282 Score: 293
Period size: 46 Copynumber: 3.3 Consensus size: 46
98673122 TCTGATCAGT
98673132 GACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGA
1 GACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGA
98673178 GACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGA
1 GACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGA
*
98673224 GACAAAGTGATAAGTGGTAGGTTTAGCTACACTTATCTGATTAAGA
1 GACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGA
98673270 GACAAAGTGATAA
1 GACAAAGTGATAA
98673283 ATCAAGTGAC
Statistics
Matches: 104, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 104 1.00
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (46 bp):
GACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGA
Found at i:98673330 original size:66 final size:66
Alignment explanation
Indices: 98673224--98673348 Score: 214
Period size: 66 Copynumber: 1.9 Consensus size: 66
98673214 CTGATTAAGA
* * *
98673224 GACAAAGTGATAAGTGGTAGGTTTAGCTACACTTATCTGATTAAGAGACAAAGTGATAAATCAAG
1 GACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAATCAAG
98673289 T
66 T
*
98673290 GACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAA
1 GACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAA
98673349 GTGGTAGCTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (66 bp):
GACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAATCAAG
T
Found at i:98673350 original size:46 final size:46
Alignment explanation
Indices: 98673283--98673486 Score: 333
Period size: 46 Copynumber: 4.5 Consensus size: 46
98673273 AAAGTGATAA
*
98673283 ATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTG
1 ATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
*
98673329 ATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCAACACTTATCTG
1 ATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
*
98673375 ATCAAGTGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
1 ATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
*
98673421 ATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTG
1 ATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
* *
98673466 ATC-AGGGAC-AAGTGACAAGTG
1 ATCAAGTGACAAAGTGATAAGTG
98673487 ATCATATGTA
Statistics
Matches: 150, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
43 11 0.07
44 5 0.03
45 19 0.13
46 115 0.77
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (46 bp):
ATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
Found at i:98673375 original size:112 final size:112
Alignment explanation
Indices: 98673178--98673394 Score: 362
Period size: 112 Copynumber: 1.9 Consensus size: 112
98673168 CTGATTAAGA
* *
98673178 GACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGAGACAAAGTGATAAGTGGTA
1 GACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTA
* * * *
98673243 GGTTTAGCTACACTTATCTGATTAAGAGACAAAGTGATAAATCAAGT
66 GCTTTAGCAACACTTATCTGATCAAGAGAAAAAGTGATAAATCAAGT
*
98673290 GACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTA
1 GACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTA
*
98673355 GCTTTAGCAACACTTATCTGATCAAGTGAAAAAGTGATAA
66 GCTTTAGCAACACTTATCTGATCAAGAGAAAAAGTGATAA
98673395 GTGGTAGCTT
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
112 97 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (112 bp):
GACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTA
GCTTTAGCAACACTTATCTGATCAAGAGAAAAAGTGATAAATCAAGT
Found at i:98673417 original size:158 final size:158
Alignment explanation
Indices: 98673129--98673440 Score: 534
Period size: 158 Copynumber: 2.0 Consensus size: 158
98673119 ACTTCTGATC
* *
98673129 AGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGAGACAAAGTGATAAGTG
1 AGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* * * *
98673194 GTAGCTTTAGCTACACTTATCTGATTAAGAGACAAAGTGATAAGTGGTAGGTTTAGCTACACTTA
66 GTAGCTTTAGCAACACTTATCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
98673259 TCTGATTAAGAGACAAAGTGATAAATCA
131 TCTGATCAAGAGACAAAGTGATAAATCA
*
98673287 AGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 AGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
98673352 GTAGCTTTAGCAACACTTATCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
66 GTAGCTTTAGCAACACTTATCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
98673417 TCTGATCAAGTGACAAAGTGATAA
131 TCTGATCAAGAGACAAAGTGATAA
98673441 GTGGTAGCCT
Statistics
Matches: 144, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
158 144 1.00
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.29
Consensus pattern (158 bp):
AGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
GTAGCTTTAGCAACACTTATCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
TCTGATCAAGAGACAAAGTGATAAATCA
Found at i:98677646 original size:21 final size:21
Alignment explanation
Indices: 98677562--98677702 Score: 101
Period size: 21 Copynumber: 6.8 Consensus size: 21
98677552 TATTTTCTTA
*
98677562 CAGTTTAGCTCTTATGAGCTT
1 CAGTTTAACTCTTATGAGCTT
*
98677583 CAG-TTAACT-TATATGAGTTT
1 CAGTTTAACTCT-TATGAGCTT
* * *
98677603 CAATTTAACTCTTCT-AGGTTT
1 CAGTTTAACTCTTATGA-GCTT
* *
98677624 CAGTTTAGCTCTTTTGAGCTT
1 CAGTTTAACTCTTATGAGCTT
* * *
98677645 CAGTTTAACCCTTATGGGTTT
1 CAGTTTAACTCTTATGAGCTT
* * *
98677666 CCGTTCAGCTCTTATGAGCTT
1 CAGTTTAACTCTTATGAGCTT
*
98677687 CCA-TTTAACCCTTATG
1 -CAGTTTAACTCTTATG
98677703 GGTTTCCATT
Statistics
Matches: 91, Mismatches: 23, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
19 1 0.01
20 16 0.18
21 71 0.78
22 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.43
Consensus pattern (21 bp):
CAGTTTAACTCTTATGAGCTT
Found at i:98677709 original size:21 final size:21
Alignment explanation
Indices: 98677648--98677744 Score: 113
Period size: 21 Copynumber: 4.6 Consensus size: 21
98677638 TGAGCTTCAG
*
98677648 TTTAACCCTTATGGGTTTCCG
1 TTTAACCCTTATGGGTTTCCA
* * * * *
98677669 TTCAGCTCTTATGAGCTTCCA
1 TTTAACCCTTATGGGTTTCCA
98677690 TTTAACCCTTATGGGTTTCCA
1 TTTAACCCTTATGGGTTTCCA
*
98677711 TTTAACCCTTATGGGTTTCCG
1 TTTAACCCTTATGGGTTTCCA
* *
98677732 TTTAGCACTTATG
1 TTTAACCCTTATG
98677745 TGCTTCTGTG
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.42
Consensus pattern (21 bp):
TTTAACCCTTATGGGTTTCCA
Found at i:98677709 original size:42 final size:42
Alignment explanation
Indices: 98677594--98677709 Score: 144
Period size: 42 Copynumber: 2.8 Consensus size: 42
98677584 AGTTAACTTA
* * * * * * *
98677594 TATGAGTTTCAATTTAACTCTTCTAGGTTTCAGTTTAGCTCT
1 TATGAGCTTCCATTTAACCCTTATGGGTTTCCGTTCAGCTCT
*
98677636 TTTGAGCTT-CAGTTTAACCCTTATGGGTTTCCGTTCAGCTCT
1 TATGAGCTTCCA-TTTAACCCTTATGGGTTTCCGTTCAGCTCT
98677678 TATGAGCTTCCATTTAACCCTTATGGGTTTCC
1 TATGAGCTTCCATTTAACCCTTATGGGTTTCC
98677710 ATTTAACCCT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.02
42 60 0.95
43 2 0.03
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.44
Consensus pattern (42 bp):
TATGAGCTTCCATTTAACCCTTATGGGTTTCCGTTCAGCTCT
Found at i:98677722 original size:42 final size:42
Alignment explanation
Indices: 98677594--98677723 Score: 138
Period size: 42 Copynumber: 3.1 Consensus size: 42
98677584 AGTTAACTTA
* * * * *
98677594 TATGAGTTTCAATTTAACTCTTCTAGGTTT-CAGTTTAGCTCT
1 TATGAGCTTCCATTTAACCCTTATGGGTTTCCA-TTTAGCTCT
* * *
98677636 TTTGAGCTT-CAGTTTAACCCTTATGGGTTTCCGTTCAGCTCT
1 TATGAGCTTCCA-TTTAACCCTTATGGGTTTCCATTTAGCTCT
* *
98677678 TATGAGCTTCCATTTAACCCTTATGGGTTTCCATTTAACCCT
1 TATGAGCTTCCATTTAACCCTTATGGGTTTCCATTTAGCTCT
98677720 TATG
1 TATG
98677724 GGTTTCCGTT
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 68 0.94
43 3 0.04
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (42 bp):
TATGAGCTTCCATTTAACCCTTATGGGTTTCCATTTAGCTCT
Found at i:98685570 original size:11 final size:12
Alignment explanation
Indices: 98685542--98685570 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
98685532 AATATATATA
98685542 TGAGAGAAAACT
1 TGAGAGAAAACT
98685554 TGAGAGAAAAC-
1 TGAGAGAAAACT
98685565 TGAGAG
1 TGAGAG
98685571 CATATGGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.48, C:0.07, G:0.31, T:0.14
Consensus pattern (12 bp):
TGAGAGAAAACT
Done.