Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 302 of 352
Found at i:99040324 original size:136 final size:135
Alignment explanation
Indices: 99040184--99040529 Score: 368
Period size: 139 Copynumber: 2.5 Consensus size: 135
99040174 ATTAATTTTA
*
99040184 AATTTAATAATTTATAAAAATTATATTTAAAATTTTAAAAAATTTAAAATATAAATTTAAAATAT
1 AATTTAATAATTTATAAAAATAATATTTAAAATTTTAAAAAATTTAAAATATAAATTTAAAATAT
* *
99040249 TATAAAACAAATAATAAATTTGAAATGTCATATCTTTAAAA-A-TAATATATTTTAAATGATTTC
66 TATAAAACAAATAATAAATTTGAAAGGTCATATCTTTAAAATATTAA-ATATTTTAAATGA-TTA
99040312 AAAATCAT
129 AAAAT-AT
** * * *
99040320 AATTTAAAATAATTTA-AAAATCATAAT-TAAAAAATTATAAAACAAATTAAAATATACATTTAA
1 AATTT--AATAATTTATAAAA--ATAATATTTAAAATTTTAAAA-AATTTAAAATATAAATTTAA
* * * *
99040383 AATATTATAAAACTAATAATAAATTTGAAAGGTCATATCTTTAAAATATTTAAATGTTTTATATT
61 AATATTATAAAACAAATAATAAATTTGAAAGGTCATATCTTTAAAATA-TTAAATATTTTAAATG
99040448 ATTAAAAATAT
125 ATTAAAAATAT
* * *
99040459 -TTTTAAT-TTTTA-AAAAATAATATTTAAATTTTTAAACAATGATTTAAAA-ATAATATTTAAA
1 AATTTAATAATTTATAAAAATAATATTTAAAATTTTAAA-AA--ATTTAAAATATAA-ATTTAAA
*
99040520 AT-TTAGAAAA
62 ATATTATAAAA
99040530 ATAATTTCAA
Statistics
Matches: 176, Mismatches: 21, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
133 5 0.03
134 11 0.06
135 19 0.11
136 24 0.14
137 4 0.02
138 24 0.14
139 68 0.39
140 8 0.05
141 10 0.06
142 3 0.02
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (135 bp):
AATTTAATAATTTATAAAAATAATATTTAAAATTTTAAAAAATTTAAAATATAAATTTAAAATAT
TATAAAACAAATAATAAATTTGAAAGGTCATATCTTTAAAATATTAAATATTTTAAATGATTAAA
AATAT
Found at i:99040329 original size:24 final size:24
Alignment explanation
Indices: 99040283--99040361 Score: 90
Period size: 24 Copynumber: 3.3 Consensus size: 24
99040273 ATGTCATATC
* * *
99040283 TTTAAAAATAATATATTTTAAATGA
1 TTTAAAAATCATA-ATTTAAAATAA
*
99040308 TTTCAAAATCATAATTTAAAATAA
1 TTTAAAAATCATAATTTAAAATAA
99040332 TTTAAAAATCATAA-TTAAAA-AA
1 TTTAAAAATCATAATTTAAAATAA
99040354 TTATAAAA
1 TT-TAAAA
99040362 CAAATTAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
22 4 0.08
23 11 0.23
24 22 0.46
25 11 0.23
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (24 bp):
TTTAAAAATCATAATTTAAAATAA
Found at i:99040351 original size:13 final size:13
Alignment explanation
Indices: 99040312--99040352 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
99040302 AAATGATTTC
*
99040312 AAAATCATAATTT
1 AAAATCATAATTA
*
99040325 AAAAT-A-ATTTA
1 AAAATCATAATTA
99040336 AAAATCATAATTA
1 AAAATCATAATTA
99040349 AAAA
1 AAAA
99040353 ATTATAAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
11 8 0.35
12 2 0.09
13 13 0.57
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATCATAATTA
Found at i:99040361 original size:33 final size:33
Alignment explanation
Indices: 99040320--99040399 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 33
99040310 TCAAAATCAT
99040320 AATT-TAAAATAATTTAAAA-AT-CATAATTAAAA
1 AATTATAAAATAATTTAAAATATACAT--TTAAAA
* *
99040352 AATTATAAAACAAATTAAAATATACATTTAAAA
1 AATTATAAAATAATTTAAAATATACATTTAAAA
*
99040385 TATTATAAAACTAAT
1 AATTATAAAA-TAAT
99040400 AATAAATTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
32 4 0.10
33 28 0.72
34 4 0.10
35 3 0.08
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (33 bp):
AATTATAAAATAATTTAAAATATACATTTAAAA
Found at i:99040484 original size:21 final size:21
Alignment explanation
Indices: 99040451--99040494 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
99040441 TTATATTATT
*
99040451 AAAAATAT-TTTTAATTTTTA
1 AAAAATATATTTAAATTTTTA
99040471 AAAAATAATATTTAAATTTTTA
1 AAAAAT-ATATTTAAATTTTTA
99040493 AA
1 AA
99040495 CAATGATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 2 0.10
22 13 0.62
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
AAAAATATATTTAAATTTTTA
Found at i:99040508 original size:33 final size:34
Alignment explanation
Indices: 99040471--99040566 Score: 117
Period size: 33 Copynumber: 2.9 Consensus size: 34
99040461 TTAATTTTTA
* * *
99040471 AAAAATAATATTTAAATTTTTA-AACAATGATTT-
1 AAAAATAATATTTAAA-ATTTAGAAAAATAATTTC
99040504 AAAAATAATATTTAAAATTTAGAAAAATAATTTC
1 AAAAATAATATTTAAAATTTAGAAAAATAATTTC
*
99040538 AAATATATATATTTAAAATTTA-AAAAATA
1 AAAAATA-ATATTTAAAATTTAGAAAAATA
99040567 TATATTATAA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
32 4 0.07
33 25 0.45
34 13 0.23
35 14 0.25
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (34 bp):
AAAAATAATATTTAAAATTTAGAAAAATAATTTC
Found at i:99040523 original size:20 final size:20
Alignment explanation
Indices: 99040500--99040578 Score: 53
Period size: 20 Copynumber: 4.0 Consensus size: 20
99040490 TTAAACAATG
99040500 ATTTAAAAATAATATTTAAA
1 ATTTAAAAATAATATTTAAA
* *
99040520 ATTTAGAAA-AATAATTTCAA
1 ATTTAAAAATAAT-ATTTAAA
*
99040540 A--T--ATAT-ATATTTAAA
1 ATTTAAAAATAATATTTAAA
99040555 ATTTAAAAAATATATATTATAAA
1 ATTT-AAAAATA-ATATT-TAAA
99040578 A
1 A
99040579 CATTTCAAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 17
0.67 0.08 0.26
Matches are distributed among these distances:
15 7 0.16
16 4 0.09
17 1 0.02
18 1 0.02
19 3 0.07
20 18 0.41
22 5 0.11
23 5 0.11
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (20 bp):
ATTTAAAAATAATATTTAAA
Found at i:99040558 original size:22 final size:24
Alignment explanation
Indices: 99040532--99040591 Score: 79
Period size: 22 Copynumber: 2.5 Consensus size: 24
99040522 TTAGAAAAAT
99040532 AATTTCAAATATATATATT-T-AA
1 AATTTCAAATATATATATTATAAA
* *
99040554 AATTTAAAAAATATATATTATAAA
1 AATTTCAAATATATATATTATAAA
99040578 ACATTTCAAATATA
1 A-ATTTCAAATATA
99040592 CATTTCAAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 17 0.55
23 1 0.03
24 3 0.10
25 10 0.32
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (24 bp):
AATTTCAAATATATATATTATAAA
Found at i:99040631 original size:20 final size:18
Alignment explanation
Indices: 99040606--99040679 Score: 55
Period size: 19 Copynumber: 3.9 Consensus size: 18
99040596 TCAAGTTTTT
99040606 TAAAATTAATAATAAAAAAG
1 TAAAA-TAA-AATAAAAAAG
99040626 TAAAATAAAATAAAAATA-
1 TAAAATAAAATAAAAA-AG
* *
99040644 AATAAATAAATATAGATAAAG
1 TA-AAATAAA-ATA-AAAAAG
99040665 -AAAA-AAAATAAAAAA
1 TAAAATAAAATAAAAAA
99040680 ATGTCAGAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
16 4 0.09
17 3 0.07
18 12 0.26
19 14 0.30
20 10 0.22
21 3 0.07
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (18 bp):
TAAAATAAAATAAAAAAG
Found at i:99040653 original size:24 final size:23
Alignment explanation
Indices: 99040606--99040677 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 23
99040596 TCAAGTTTTT
*
99040606 TAAAATTAATAATAAAAAAGTAAAA
1 TAAAA-TAAAAATAAAAAA-TAAAA
99040631 TAAAATAAAAATAAATAAAT-AAA
1 TAAAATAAAAATAAA-AAATAAAA
*
99040654 TATAGATAAAGAA-AAAAAATAAAA
1 TA-AAATAAA-AATAAAAAATAAAA
99040678 AAATGTCAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
23 9 0.22
24 22 0.54
25 10 0.24
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (23 bp):
TAAAATAAAAATAAAAAATAAAA
Found at i:99040741 original size:23 final size:21
Alignment explanation
Indices: 99040717--99040774 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
99040707 AAAAGTAAAT
99040717 TTTTTAAAAAATATATATTTTA
1 TTTTTAAAAAATA-ATATTTTA
**
99040739 TTTTTAAAAAATAATATTCAA
1 TTTTTAAAAAATAATATTTTA
**
99040760 AATTTAAAAAATAAT
1 TTTTTAAAAAATAAT
99040775 TTAAAATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 19 0.59
22 13 0.41
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTTTAAAAAATAATATTTTA
Found at i:99040765 original size:21 final size:19
Alignment explanation
Indices: 99040741--99040781 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 19
99040731 ATATTTTATT
99040741 TTTAAAAAATAATATTCAAAA
1 TTTAAAAAATAAT-TT-AAAA
99040762 TTTAAAAAATAATTTAAAA
1 TTTAAAAAATAATTTAAAA
99040781 T
1 T
99040782 AATATTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 2 0.10
21 13 0.65
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (19 bp):
TTTAAAAAATAATTTAAAA
Found at i:99040775 original size:12 final size:13
Alignment explanation
Indices: 99040760--99040793 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
99040750 TAATATTCAA
99040760 AATTTAAAA-AAT
1 AATTTAAAATAAT
99040772 AATTTAAAATAAT
1 AATTTAAAATAAT
99040785 -ATTTAAAAT
1 AATTTAAAAT
99040794 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 18 0.86
13 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATTTAAAATAAT
Found at i:99041111 original size:11 final size:12
Alignment explanation
Indices: 99041090--99041127 Score: 51
Period size: 11 Copynumber: 3.1 Consensus size: 12
99041080 TAAAAAACTT
99041090 AATATATTTAAA
1 AATATATTTAAA
99041102 AATA-ATTTAAA
1 AATATATTTAAA
99041113 AATCATAATTTAAA
1 AAT-AT-ATTTAAA
99041127 A
1 A
99041128 TATTATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 10 0.43
12 5 0.22
14 8 0.35
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (12 bp):
AATATATTTAAA
Found at i:99041217 original size:21 final size:22
Alignment explanation
Indices: 99041191--99041244 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
99041181 GAAAGTTTAA
99041191 AATATTT-AAATATTAAAAAA-T
1 AATATTTAAAAT-TTAAAAAAGT
99041212 AATATTTAAAATTTAAAAAAGT
1 AATATTTAAAATTTAAAAAAGT
*
99041234 AAT-TTCAAAAT
1 AATATTTAAAAT
99041245 ATATATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 22 0.73
22 8 0.27
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
AATATTTAAAATTTAAAAAAGT
Found at i:99041279 original size:24 final size:22
Alignment explanation
Indices: 99041240--99041312 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 22
99041230 AAGTAATTTC
99041240 AAAATATATATTTAAAA-ATTAA
1 AAAATATATATTTAAAATATT-A
*
99041262 AAAATATATATTAATAAAATATTT
1 AAAATATATATT--TAAAATATTA
* *
99041286 TAAATATATATTTCGAAAATTTTA
1 AAAATATATATTT--AAAATATTA
99041310 AAA
1 AAA
99041313 TTAATAATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
22 13 0.32
24 25 0.61
25 3 0.07
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (22 bp):
AAAATATATATTTAAAATATTA
Found at i:99041288 original size:34 final size:34
Alignment explanation
Indices: 99041199--99041289 Score: 107
Period size: 34 Copynumber: 2.6 Consensus size: 34
99041189 AAAATATTTA
*
99041199 AATATTAAAAAATAATATTTAAAATTTAAAAAAGT
1 AATATTAAAAAAT-ATATTTAAAAATTAAAAAAGT
*
99041234 AAT-TTCAAAATATATATTTAAAAATTAAAAAA-T
1 AATATT-AAAAAATATATTTAAAAATTAAAAAAGT
99041267 ATATATTAATAAAATAT-TTTAAA
1 A-ATATTAA-AAAATATATTTAAA
99041290 TATATATTTC
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
33 2 0.04
34 30 0.61
35 17 0.35
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (34 bp):
AATATTAAAAAATATATTTAAAAATTAAAAAAGT
Found at i:99041328 original size:46 final size:46
Alignment explanation
Indices: 99041241--99041331 Score: 112
Period size: 47 Copynumber: 1.9 Consensus size: 46
99041231 AGTAATTTCA
*
99041241 AAATATATATTTAAAAATTAAAAAATATATATTAATAAAATATTTT
1 AAATATATATTTAAAAATTAAAAAATATATAATAATAAAATATTTT
* **
99041287 AAATATATATTTCGAAAATTTTAAAAT-TAATAATAATAAATATAT
1 AAATATATATTT-AAAAATTAAAAAATAT-ATAATAATAAA-ATAT
99041332 AAATAAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
46 13 0.34
47 21 0.55
48 4 0.11
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (46 bp):
AAATATATATTTAAAAATTAAAAAATATATAATAATAAAATATTTT
Found at i:99041337 original size:4 final size:4
Alignment explanation
Indices: 99041321--99041355 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
99041311 AATTAATAAT
*
99041321 AATA AATA TATA AATA AATAA AATA AATA AATA AA
1 AATA AATA AATA AATA AAT-A AATA AATA AATA AA
99041356 GACAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 24 0.86
5 4 0.14
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:99041347 original size:21 final size:22
Alignment explanation
Indices: 99041310--99041355 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
99041300 GAAAATTTTA
* *
99041310 AAATTAATAATAATAAATATAT
1 AAATAAATAATAATAAATAAAT
99041332 AAATAAATAA-AATAAATAAAT
1 AAATAAATAATAATAAATAAAT
99041353 AAA
1 AAA
99041356 GACAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (22 bp):
AAATAAATAATAATAAATAAAT
Found at i:99044159 original size:59 final size:59
Alignment explanation
Indices: 99044087--99044297 Score: 305
Period size: 59 Copynumber: 3.6 Consensus size: 59
99044077 CGAGGCATAG
* * * * *
99044087 GAAAATTTTGAAAGATAACACAACTAGGGATGTTAATCCGCAAGCTATTTCATACTTTA
1 GAAAATTTTGAAAGATAACACAACTGGGGATTTTAATCTGCGAGCTATTTCATACTTAA
* * * *
99044146 GAAAATTTTGAAAGATAACACAATTGGGGATTTTAATCTACGATCTATTTCGTACTTAA
1 GAAAATTTTGAAAGATAACACAACTGGGGATTTTAATCTGCGAGCTATTTCATACTTAA
* *
99044205 GAAAAATTTGAAAGATAACACAACTGGGGATTTTAATCTGCGAGTTATTTCATACTTAA
1 GAAAATTTTGAAAGATAACACAACTGGGGATTTTAATCTGCGAGCTATTTCATACTTAA
* *
99044264 TAAAATTTTGAAAGATAACACAACTGGGGCTTTT
1 GAAAATTTTGAAAGATAACACAACTGGGGATTTT
99044298 CAACTTTCAC
Statistics
Matches: 134, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 134 1.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (59 bp):
GAAAATTTTGAAAGATAACACAACTGGGGATTTTAATCTGCGAGCTATTTCATACTTAA
Found at i:99053195 original size:9 final size:9
Alignment explanation
Indices: 99053181--99053222 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
99053171 TGCAAACATT
99053181 AGAAAAGAA
1 AGAAAAGAA
99053190 AGAAAAAGTAA
1 AG-AAAAG-AA
99053201 AG-AAAGAA
1 AGAAAAGAA
*
99053209 AGAAAAGAG
1 AGAAAAGAA
99053218 AGAAA
1 AGAAA
99053223 GGGGCACACG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
8 4 0.14
9 16 0.55
10 5 0.17
11 4 0.14
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (9 bp):
AGAAAAGAA
Found at i:99054981 original size:22 final size:25
Alignment explanation
Indices: 99054932--99054984 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 25
99054922 TGAGGCTATG
* *
99054932 TTGGTATGTTAGCCTAGTTTATATT
1 TTGGTATGTTAGCCTAGTTTAAAGT
99054957 TTGGTATG-T-GCC-AGTTTAAAGT
1 TTGGTATGTTAGCCTAGTTTAAAGT
99054979 TTGGTA
1 TTGGTA
99054985 GCTTAGCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 14 0.54
23 3 0.12
24 1 0.04
25 8 0.31
ACGTcount: A:0.21, C:0.08, G:0.25, T:0.47
Consensus pattern (25 bp):
TTGGTATGTTAGCCTAGTTTAAAGT
Found at i:99079077 original size:26 final size:26
Alignment explanation
Indices: 99079048--99079102 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
99079038 GAATCTTTAG
99079048 TGAGGATGTGAAACTCTGTGATATTT
1 TGAGGATGTGAAACTCTGTGATATTT
99079074 TGAGGATGTGAAACTCTGTGATATTT
1 TGAGGATGTGAAACTCTGTGATATTT
99079100 TGA
1 TGA
99079103 ATCAAAGGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.38
Consensus pattern (26 bp):
TGAGGATGTGAAACTCTGTGATATTT
Found at i:99083071 original size:40 final size:40
Alignment explanation
Indices: 99082987--99083209 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
99082977 TCGAATGATG
* * * *
99082987 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
99083027 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
99083067 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
99083106 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
99083146 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-TATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
99083186 --CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
99083210 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 22 0.13
39 36 0.22
40 97 0.60
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:99083123 original size:79 final size:80
Alignment explanation
Indices: 99082987--99083209 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 80
99082977 TCGAATGATG
* * * * *
99082987 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
99083050 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
99083067 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
99083131 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* *
99083146 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-TATAA--CGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
99083208 TG
65 TG
99083210 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
78 23 0.18
79 62 0.49
80 41 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:99091362 original size:40 final size:40
Alignment explanation
Indices: 99091124--99091348 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
99091114 TCGAATGATG
* * * *
99091124 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
99091164 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
99091204 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
99091243 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
99091283 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
99091324 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
99091349 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:99091370 original size:119 final size:119
Alignment explanation
Indices: 99091124--99091381 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
99091114 TCGAATGATG
* *
99091124 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
99091189 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
99091243 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
99091306 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
99091363 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
99091382 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:99096223 original size:23 final size:23
Alignment explanation
Indices: 99096183--99096329 Score: 124
Period size: 22 Copynumber: 6.3 Consensus size: 23
99096173 AAGCTCCTCT
99096183 TGAGCTGATGAACAGTAAGCTCTAC
1 TGAGCTGA--AACAGTAAGCTCTAC
* * *
99096208 TGAACTGAAACGGTAAGCTCTAT
1 TGAGCTGAAACAGTAAGCTCTAC
* *
99096231 TGAGTTG-AACAGTAAGTTCTAC
1 TGAGCTGAAACAGTAAGCTCTAC
*
99096253 CGAGCTG-AACAGTAAGCTCATAC
1 TGAGCTGAAACAGTAAGCTC-TAC
* *
99096276 T-AGCTGAAA-TGATAAGCTCTAT
1 TGAGCTGAAACAG-TAAGCTCTAC
*
99096298 TGAGCTGTAAATAGTAAGCTCTTAC
1 TGAGCTG-AAACAGTAAGCTC-TAC
99096323 -GAGCTGA
1 TGAGCTGA
99096330 TATATAGGTA
Statistics
Matches: 99, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
22 37 0.37
23 36 0.36
24 16 0.16
25 10 0.10
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAC
Found at i:99096343 original size:26 final size:24
Alignment explanation
Indices: 99096263--99096353 Score: 89
Period size: 24 Copynumber: 3.8 Consensus size: 24
99096253 CGAGCTGAAC
* *
99096263 AGTAAGCTCATACTAGCTG-AAAT
1 AGTAAGCTCTTACGAGCTGTAAAT
*
99096286 -GATAAGCTC-TATTGAGCTGTAAAT
1 AG-TAAGCTCTTA-CGAGCTGTAAAT
*
99096310 AGTAAGCTCTTACGAGCTGATATAT
1 AGTAAGCTCTTACGAGCTG-TAAAT
99096335 AGGTAAGCTCTTACGAGCT
1 A-GTAAGCTCTTACGAGCT
99096354 TTGGTGAGTC
Statistics
Matches: 57, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
22 3 0.05
23 12 0.21
24 17 0.30
25 8 0.14
26 17 0.30
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (24 bp):
AGTAAGCTCTTACGAGCTGTAAAT
Found at i:99099123 original size:41 final size:41
Alignment explanation
Indices: 99099066--99099148 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
99099056 GAAGGGGGTT
99099066 GCTCTTTCCAGAACTTTTCTGGAATACAGAACCACACGCCA
1 GCTCTTTCCAGAACTTTTCTGGAATACAGAACCACACGCCA
99099107 GCTCTTTCCAGAACTTTTCTGGAATACAGAACCACACGCCA
1 GCTCTTTCCAGAACTTTTCTGGAATACAGAACCACACGCCA
99099148 G
1 G
99099149 GAATTACTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (41 bp):
GCTCTTTCCAGAACTTTTCTGGAATACAGAACCACACGCCA
Found at i:99100660 original size:13 final size:15
Alignment explanation
Indices: 99100632--99100662 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
99100622 ATATATTAAG
99100632 ATAACGAATAATAAT
1 ATAACGAATAATAAT
99100647 ATAACGATATAATAAT
1 ATAACGA-ATAATAAT
99100663 GGTATTAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.29
Consensus pattern (15 bp):
ATAACGAATAATAAT
Found at i:99104722 original size:43 final size:43
Alignment explanation
Indices: 99104673--99104787 Score: 176
Period size: 43 Copynumber: 2.7 Consensus size: 43
99104663 GATTTCGATG
* * *
99104673 TCCCACACATGGTCTTACACGTAATCACAATATAATGCCACTA
1 TCCCACACAGGGTCTTACATGTAATCACAATACAATGCCACTA
* *
99104716 TTCCACACAGGGTCTTACATGTAATCTCAATACAATGCCACTA
1 TCCCACACAGGGTCTTACATGTAATCACAATACAATGCCACTA
*
99104759 TCCCACACAGGGTCTTATATGTAATCACA
1 TCCCACACAGGGTCTTACATGTAATCACA
99104788 TATCAATAAC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.27
Consensus pattern (43 bp):
TCCCACACAGGGTCTTACATGTAATCACAATACAATGCCACTA
Found at i:99104763 original size:86 final size:87
Alignment explanation
Indices: 99104595--99104794 Score: 223
Period size: 86 Copynumber: 2.3 Consensus size: 87
99104585 TATCCTAGAT
* * * * *
99104595 ATGGTCTTACATGTTATCAC-ATATCGATGCCACTGTTCCACACAGGGTCTTACATGAAGTCGAT
1 ATGGTCTTACATGTAATCACAATATCAATGCCACTATTCCACACAGGGTCTTACATGAAGTCCAA
* * * *
99104659 TAACGATTTCGATGTCCCACAC
66 TAACGAATGCCATATCCCACAC
*
99104681 ATGGTCTTACACGTAATCACAATAT-AATGCCACTATTCCACACAGGGTCTTACATGTAA-TCTC
1 ATGGTCTTACATGTAATCACAATATCAATGCCACTATTCCACACAGGGTCTTACATG-AAGTC-C
99104744 AAT-AC-AATGCCACTATCCCACAC
64 AATAACGAATGCCA-TATCCCACAC
* *
99104767 AGGGTCTTATATGTAATCAC-ATATCAAT
1 ATGGTCTTACATGTAATCACAATATCAAT
99104795 AACCTAATGT
Statistics
Matches: 96, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
85 8 0.08
86 80 0.83
87 8 0.08
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (87 bp):
ATGGTCTTACATGTAATCACAATATCAATGCCACTATTCCACACAGGGTCTTACATGAAGTCCAA
TAACGAATGCCATATCCCACAC
Found at i:99111018 original size:33 final size:33
Alignment explanation
Indices: 99110971--99111047 Score: 109
Period size: 33 Copynumber: 2.3 Consensus size: 33
99110961 ATAACATAGC
* * *
99110971 ATCACTACAGTCTGGGCGAAAGCCCTATTCAGT
1 ATCAGTACAGTCTGGGCCAAAGCCCTATACAGT
*
99111004 ATCAGTACAGTCTGGGCCAGAGCCCTATACAGT
1 ATCAGTACAGTCTGGGCCAAAGCCCTATACAGT
*
99111037 ATCAGTTCAGT
1 ATCAGTACAGT
99111048 GCGAAATGCA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (33 bp):
ATCAGTACAGTCTGGGCCAAAGCCCTATACAGT
Found at i:99114817 original size:42 final size:42
Alignment explanation
Indices: 99114715--99114865 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 42
99114705 ATCTGAGACA
* *
99114715 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCG-ATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGTATTGA-ATT
* **
99114757 TACGTATAAGACCATGTCTGGGACATTGGCATCGTATCT-AATT
1 T-CGTGTAAGACCATGTCTGGGACACAGGCATCGTAT-TGAATT
* *
99114800 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCG-TATTGAATT
* * * *
99114843 ACATGTAAGACCAAGTCCGGGAC
1 TCGTGTAAGACCATGTCTGGGAC
99114866 GTCGACATTG
Statistics
Matches: 90, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
42 30 0.33
43 56 0.62
44 3 0.03
45 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGTATTGAATT
Found at i:99122091 original size:25 final size:25
Alignment explanation
Indices: 99122059--99122106 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
99122049 CGCGGTGTTG
99122059 AGACGTTTCGAACTCTGACCGCCGT
1 AGACGTTTCGAACTCTGACCGCCGT
99122084 AGACGTTTCGAACTCTGACCGCC
1 AGACGTTTCGAACTCTGACCGCC
99122107 CTACATGGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.21, C:0.33, G:0.23, T:0.23
Consensus pattern (25 bp):
AGACGTTTCGAACTCTGACCGCCGT
Found at i:99122882 original size:23 final size:22
Alignment explanation
Indices: 99122854--99122909 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
99122844 ATATAATAAA
99122854 ATTATTTTATTAT-GTATTATTAT
1 ATTATTTTATTATGGTA-TA-TAT
99122877 ATTATTTTA-TATGGTATATAT
1 ATTATTTTATTATGGTATATAT
99122898 ATTATTTATATT
1 ATTATTT-TATT
99122910 TTATTAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
21 10 0.33
22 7 0.23
23 13 0.43
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (22 bp):
ATTATTTTATTATGGTATATAT
Found at i:99122987 original size:100 final size:95
Alignment explanation
Indices: 99122764--99122989 Score: 222
Period size: 100 Copynumber: 2.3 Consensus size: 95
99122754 TGGAAATCCA
* * **
99122764 TTTATTTTATTAAATTATATATTATGGCATACATATTATTTATATTTTATTAATAAATTTTTTTT
1 TTTATGTTATTATATTAT-TA-TATGGCATACATATTATTTATATTTTATTAATAAATTTTTTAA
* *
99122829 ATATATGTATTATAAATATAATAAAATTATTTT
64 AAAAATGTATTATAAATATAATAAAA-TATTTT
* * *
99122862 ATTATGTATTATTATATTATTTTATATGGTATATATATTATTTATATTTTATTAATTAAGTATTT
1 TTTATG--TTATTATATTA--TTATATGGCATACATATTATTTATATTTTATTAA-TAA--ATTT
*
99122927 TTTAAAAAAATGATAATTATATATA-AATAATCAA-ATTTT
59 TTTAAAAAAATG-T-ATTATAAATATAATAA--AATATTTT
99122966 TTTATGTTATTATATTATTATATG
1 TTTATGTTATTATATTATTATATG
99122990 TTTCCTATAA
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
98 4 0.04
100 46 0.43
101 5 0.05
102 12 0.11
103 12 0.11
104 16 0.15
105 9 0.08
106 2 0.02
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.55
Consensus pattern (95 bp):
TTTATGTTATTATATTATTATATGGCATACATATTATTTATATTTTATTAATAAATTTTTTAAAA
AAATGTATTATAAATATAATAAAATATTTT
Found at i:99123300 original size:12 final size:12
Alignment explanation
Indices: 99123280--99123350 Score: 51
Period size: 12 Copynumber: 5.9 Consensus size: 12
99123270 TTGTATACTG
*
99123280 TATACATTTTAT
1 TATATATTTTAT
99123292 TATATA-TTT-T
1 TATATATTTTAT
99123302 TATAT-TATTTAT
1 TATATAT-TTTAT
99123314 TATATGATTTATAT
1 TATAT-ATTT-TAT
* *
99123328 TATTTAATTTA-
1 TATATATTTTAT
99123339 TATTATATTTTA
1 TA-TATATTTTA
99123351 CCATATTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
10 6 0.13
11 8 0.17
12 20 0.43
13 5 0.11
14 8 0.17
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (12 bp):
TATATATTTTAT
Found at i:99123307 original size:8 final size:9
Alignment explanation
Indices: 99123288--99123347 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 9
99123278 TGTATACATT
99123288 TTATTATATA
1 TTATT-TATA
99123298 TT-TTTATA
1 TTATTTATA
99123306 TTATTTATTA
1 TTATTTA-TA
99123316 TATGATTTATA
1 T-T-ATTTATA
99123327 TTATTTA-A
1 TTATTTATA
99123335 TTTATATTATA
1 -TTAT-TTATA
99123346 TT
1 TT
99123348 TTACCATATT
Statistics
Matches: 43, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
8 7 0.16
9 15 0.35
10 11 0.26
11 5 0.12
12 5 0.12
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (9 bp):
TTATTTATA
Found at i:99123326 original size:21 final size:21
Alignment explanation
Indices: 99123287--99123342 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 21
99123277 CTGTATACAT
99123287 TTTATTATATATTTTTATATTA
1 TTTATTATATA-TTTTATATTA
99123309 TTTATTATATGA-TTTATATTA
1 TTTATTATAT-ATTTTATATTA
99123330 TTTAATT-TATATT
1 TTT-ATTATATATT
99123343 ATATTTTACC
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
20 1 0.03
21 16 0.52
22 13 0.42
23 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTATTATATATTTTATATTA
Found at i:99123330 original size:14 final size:14
Alignment explanation
Indices: 99123311--99123346 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
99123301 TTATATTATT
*
99123311 TATTATATGATTTA
1 TATTATATAATTTA
*
99123325 TATTATTTAATTTA
1 TATTATATAATTTA
99123339 TATTATAT
1 TATTATAT
99123347 TTTACCATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (14 bp):
TATTATATAATTTA
Found at i:99132682 original size:42 final size:42
Alignment explanation
Indices: 99132635--99132750 Score: 146
Period size: 42 Copynumber: 2.8 Consensus size: 42
99132625 TCGTATGATT
**
99132635 TTCAGTTTAACCC-TATTGGGTTTTCGTTTAGCTCTTTTGAGC
1 TTCAGTTTAACCCTTA-TGGGTTTTCGTTTAGCTCTTACGAGC
* *
99132677 TTCAGTTTAACCCTTATGGGTTTTTGTTCAGCTCTTACGAGC
1 TTCAGTTTAACCCTTATGGGTTTTCGTTTAGCTCTTACGAGC
* *
99132719 TTCTA-TTCAACCCTTACGGGTTTTCGTTTAGC
1 TTC-AGTTTAACCCTTATGGGTTTTCGTTTAGC
99132751 ACTTGTGTGC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 61 0.95
43 3 0.05
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.45
Consensus pattern (42 bp):
TTCAGTTTAACCCTTATGGGTTTTCGTTTAGCTCTTACGAGC
Found at i:99134692 original size:22 final size:22
Alignment explanation
Indices: 99134674--99134717 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
99134664 GTCTTTCTTA
99134674 GCCAAAGTTCCTTTATTTCAGT
1 GCCAAAGTTCCTTTATTTCAGT
99134696 GCCAAAGTTCCTTTATTTCAGT
1 GCCAAAGTTCCTTTATTTCAGT
99134718 TTCGACCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (22 bp):
GCCAAAGTTCCTTTATTTCAGT
Found at i:99140623 original size:17 final size:18
Alignment explanation
Indices: 99140587--99140624 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
99140577 ACTTACTAAG
* *
99140587 TCTTTTGCATCATCTTTC
1 TCTTTTGCAACATATTTC
99140605 TCTTTTGCAAC-TATTTC
1 TCTTTTGCAACATATTTC
99140622 TCT
1 TCT
99140625 CACCATAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.13, C:0.26, G:0.05, T:0.55
Consensus pattern (18 bp):
TCTTTTGCAACATATTTC
Found at i:99142461 original size:6 final size:6
Alignment explanation
Indices: 99142450--99142513 Score: 56
Period size: 6 Copynumber: 10.2 Consensus size: 6
99142440 TGGCAATCTC
* * * *
99142450 TTCTTT TTCTTT TTCTTC TTCTTT TACCTTT TCTTTTGT TTCTGT TTCTTT
1 TTCTTT TTCTTT TTCTTT TTCTTT T-TCTTT T-TCTT-T TTCTTT TTCTTT
*
99142501 TTCCTT TTCTTT T
1 TTCTTT TTCTTT T
99142514 ACTTCATCTG
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
6 34 0.76
7 9 0.20
8 2 0.04
ACGTcount: A:0.02, C:0.20, G:0.03, T:0.75
Consensus pattern (6 bp):
TTCTTT
Found at i:99146269 original size:12 final size:12
Alignment explanation
Indices: 99146254--99146283 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
99146244 GTTTTGATAA
*
99146254 TTTTTTTTATAT
1 TTTTTTTTAGAT
99146266 TTTTTTTTAGAT
1 TTTTTTTTAGAT
99146278 TTTTTT
1 TTTTTT
99146284 AAAATATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (12 bp):
TTTTTTTTAGAT
Found at i:99149122 original size:7 final size:7
Alignment explanation
Indices: 99149110--99149134 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
99149100 GTTGCGAGCT
99149110 CATAATC
1 CATAATC
99149117 CATAATC
1 CATAATC
99149124 CATAATC
1 CATAATC
99149131 CATA
1 CATA
99149135 CAGACTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (7 bp):
CATAATC
Found at i:99158130 original size:3 final size:3
Alignment explanation
Indices: 99158122--99158172 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
99158112 TATATATTAA
*
99158122 GAT GAT GAT GAT GAT GAT GAT AAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
99158170 GAT
1 GAT
99158173 AATAATAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:99159839 original size:8 final size:8
Alignment explanation
Indices: 99159826--99159853 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
99159816 GTTGACGACT
99159826 GCGCGTGG
1 GCGCGTGG
99159834 GCGCGTGG
1 GCGCGTGG
99159842 GCGCGTGG
1 GCGCGTGG
99159850 GCGC
1 GCGC
99159854 CCGATGATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.29, G:0.61, T:0.11
Consensus pattern (8 bp):
GCGCGTGG
Found at i:99160588 original size:23 final size:22
Alignment explanation
Indices: 99160560--99160615 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
99160550 ATATAATAAA
99160560 ATTATTTTATTAT-GTATTATTAT
1 ATTATTTTATTATGGTA-TA-TAT
99160583 ATTATTTTA-TATGGTATATAT
1 ATTATTTTATTATGGTATATAT
99160604 ATTATTTATATT
1 ATTATTT-TATT
99160616 TTATTAATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
21 10 0.33
22 7 0.23
23 13 0.43
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (22 bp):
ATTATTTTATTATGGTATATAT
Found at i:99161006 original size:12 final size:12
Alignment explanation
Indices: 99160986--99161055 Score: 58
Period size: 12 Copynumber: 5.9 Consensus size: 12
99160976 TTGTATACTG
*
99160986 TATACATTTTAT
1 TATATATTTTAT
99160998 TATATATTTTA-
1 TATATATTTTAT
99161009 TAT-TA-TTTAT
1 TATATATTTTAT
99161019 TATATGATTTATAT
1 TATAT-ATTT-TAT
* *
99161033 TATTTAATTTA-
1 TATATATTTTAT
99161044 TATTATATTTTA
1 TA-TATATTTTA
99161056 CCATATTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
9 4 0.09
10 5 0.11
11 6 0.13
12 20 0.43
13 5 0.11
14 7 0.15
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (12 bp):
TATATATTTTAT
Found at i:99161010 original size:21 final size:22
Alignment explanation
Indices: 99160993--99161038 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
99160983 CTGTATACAT
*
99160993 TTTATTATAT-ATTTTATATTA
1 TTTATTATATGATTTTATAATA
*
99161014 TTTATTATATGA-TTTATATTA
1 TTTATTATATGATTTTATAATA
99161035 TTTA
1 TTTA
99161039 ATTTATATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTATTATATGATTTTATAATA
Found at i:99165642 original size:27 final size:26
Alignment explanation
Indices: 99165606--99165690 Score: 82
Period size: 26 Copynumber: 3.2 Consensus size: 26
99165596 CCTAGCAAGA
99165606 TTGAGTGGGTCT-GAGGACCCTTGAGT
1 TTGAGTGGGT-TAGAGGACCCTTGAGT
* *
99165632 TTGAGATGGGTTAGAGGTCTCTTGAGT
1 TTGAG-TGGGTTAGAGGACCCTTGAGT
** * * *
99165659 TTGAGTTAGTTGGAGGACCTTTGAAT
1 TTGAGTGGGTTAGAGGACCCTTGAGT
99165685 TTGAGT
1 TTGAGT
99165691 TGGTCGGAGG
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
26 26 0.54
27 22 0.46
ACGTcount: A:0.19, C:0.09, G:0.35, T:0.36
Consensus pattern (26 bp):
TTGAGTGGGTTAGAGGACCCTTGAGT
Found at i:99165691 original size:26 final size:26
Alignment explanation
Indices: 99165653--99165702 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
99165643 TAGAGGTCTC
* *
99165653 TTGAGTTTGAGTTAGTTGGAGGACCT
1 TTGAATTTGAGTTAGTCGGAGGACCT
*
99165679 TTGAATTTGAGTTGGTCGGAGGAC
1 TTGAATTTGAGTTAGTCGGAGGAC
99165703 TATGAGCGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.08, G:0.36, T:0.36
Consensus pattern (26 bp):
TTGAATTTGAGTTAGTCGGAGGACCT
Found at i:99171088 original size:16 final size:16
Alignment explanation
Indices: 99171067--99171097 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
99171057 TTCACTATTA
*
99171067 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
99171083 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
99171098 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:99172557 original size:28 final size:29
Alignment explanation
Indices: 99172520--99172631 Score: 81
Period size: 28 Copynumber: 4.0 Consensus size: 29
99172510 TATTATAGTA
*
99172520 TATAAAAATAATAGTAA-AATAATAATAG
1 TATAATAATAATAGTAATAATAATAATAG
* * *
99172548 TATAATAATATTTAAG-AAAAAGAATAATA-
1 TATAATAATA-AT-AGTAATAATAATAATAG
* * *
99172577 -AAAATAGTAATGGTAATAATAATAAT-G
1 TATAATAATAATAGTAATAATAATAATAG
* * *
99172604 TATAATAGTAAGAATAATAATAATAATA
1 TATAATAATAATAGTAATAATAATAATA
99172632 ACAATATTAG
Statistics
Matches: 64, Mismatches: 13, Indels: 13
0.71 0.14 0.14
Matches are distributed among these distances:
26 1 0.02
27 11 0.17
28 38 0.59
29 3 0.05
30 11 0.17
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (29 bp):
TATAATAATAATAGTAATAATAATAATAG
Found at i:99172742 original size:3 final size:3
Alignment explanation
Indices: 99172521--99172724 Score: 73
Period size: 3 Copynumber: 69.3 Consensus size: 3
99172511 ATTATAGTAT
* * * * *
99172521 ATA AAA ATA ATA GTA A-A ATA ATA ATA GT- ATA ATA ATA TTTA AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * * * * *
99172565 AAA AGA ATA ATA AAA ATA GTA ATG GTA ATA ATA ATA ATGT ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
* * * * * * * *
99172611 GTA AGA ATA ATA ATA ATA ATA ACA ATA TTA GTA AAA AGA ATA AGA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
99172658 ATA A-A A-A ATA A-A ATA AGGA AT- GTA ATA GTA ATA TATA ATA ATC
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA -ATA ATA ATA
* * *
99172701 ATG A-A ATA ACA CTA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
99172725 AAAATTGGAA
Statistics
Matches: 142, Mismatches: 48, Indels: 22
0.67 0.23 0.10
Matches are distributed among these distances:
2 13 0.09
3 120 0.85
4 9 0.06
ACGTcount: A:0.62, C:0.02, G:0.09, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:99172758 original size:19 final size:18
Alignment explanation
Indices: 99172717--99172761 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
99172707 TAACACTAAT
99172717 AATAATAAAAAATTGGAA
1 AATAATAAAAAATTGGAA
*
99172735 GATAATAAAAAATAAT-GAA
1 AATAATAAAAAAT--TGGAA
99172754 AATAATAA
1 AATAATAA
99172762 TATTAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 12 0.52
19 10 0.43
20 1 0.04
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (18 bp):
AATAATAAAAAATTGGAA
Found at i:99178104 original size:8 final size:7
Alignment explanation
Indices: 99178086--99178235 Score: 81
Period size: 7 Copynumber: 21.0 Consensus size: 7
99178076 ACTAATTAAT
99178086 CTAAACC
1 CTAAACC
99178093 CTAAATCC
1 CTAAA-CC
99178101 CT-AACC
1 CTAAACC
*
99178107 CTTAACCC
1 C-TAAACC
*
99178115 CATAACCC
1 C-TAAACC
99178123 CTAAACC
1 CTAAACC
*
99178130 TTAAACC
1 CTAAACC
* *
99178137 ATAAAAC
1 CTAAACC
*
99178144 ATAAACC
1 CTAAACC
* *
99178151 TTTAACC
1 CTAAACC
*
99178158 CTTAACC
1 CTAAACC
*
99178165 CTTAACC
1 CTAAACC
*
99178172 CTTAACCC
1 C-TAAACC
99178180 CTAAACC
1 CTAAACC
*
99178187 TTAAACC
1 CTAAACC
*
99178194 C-AACCC
1 CTAAACC
*
99178200 CTTAAAAC
1 C-TAAACC
*
99178208 TTAAACC
1 CTAAACC
99178215 CT-AACC
1 CTAAACC
*
99178221 CTTAACC
1 CTAAACC
99178228 CATAAACC
1 C-TAAACC
99178236 ATTAACCATA
Statistics
Matches: 113, Mismatches: 22, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
6 14 0.12
7 71 0.63
8 28 0.25
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:99178114 original size:21 final size:20
Alignment explanation
Indices: 99178089--99178186 Score: 70
Period size: 22 Copynumber: 4.5 Consensus size: 20
99178079 AATTAATCTA
99178089 AACCCTAAATCCCTAACCCTT
1 AACCCTAAA-CCCTAACCCTT
* *
99178110 AACCCCATAACCCCTAAACCTT
1 AA-CCC-TAAACCCTAACCCTT
* * * *
99178132 AAACCATAAAACATAAACCTTT
1 -AACCCTAAACCCT-AACCCTT
*
99178154 AACCCTTAACCCTTAACCCTT
1 AACCCTAAACCC-TAACCCTT
99178175 AACCCCTAAACC
1 AA-CCCTAAACC
99178187 TTAAACCCAA
Statistics
Matches: 57, Mismatches: 14, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
21 23 0.40
22 29 0.51
23 5 0.09
ACGTcount: A:0.39, C:0.40, G:0.00, T:0.21
Consensus pattern (20 bp):
AACCCTAAACCCTAACCCTT
Found at i:99178188 original size:21 final size:21
Alignment explanation
Indices: 99178091--99178274 Score: 79
Period size: 21 Copynumber: 8.6 Consensus size: 21
99178081 TTAATCTAAA
*
99178091 CCCTAAATCCCTAACCCTTAAC
1 CCCTAAA-CCTTAACCCTTAAC
* * * *
99178113 CCCATAACCCCTAAACCTTAAA
1 CCC-TAAACCTTAACCCTTAAC
* * * *
99178135 CCATAAAACATAAACCTTTAAC
1 CCCT-AAACCTTAACCCTTAAC
* *
99178157 CCTTAACCCTTAACCCTTAAC
1 CCCTAAACCTTAACCCTTAAC
99178178 CCCTAAACCTTAAACCC--AAC
1 CCCTAAACCTT-AACCCTTAAC
*
99178198 CCCTTAAAACTTAAACCC-TAAC
1 CCC-TAAACCTT-AACCCTTAAC
* * * *
99178220 CCTTAACCCATAAACCATTAA-
1 CCCTAAACC-TTAACCCTTAAC
* * * *
99178241 CCATAATCCTTAAACCCATAAT
1 CCCTAAACCTT-AACCCTTAAC
*
99178263 CCATAAACCTTA
1 CCCTAAACCTTA
99178275 CAATAGTAAC
Statistics
Matches: 123, Mismatches: 30, Indels: 19
0.72 0.17 0.11
Matches are distributed among these distances:
20 7 0.06
21 59 0.48
22 54 0.44
23 3 0.02
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.23
Consensus pattern (21 bp):
CCCTAAACCTTAACCCTTAAC
Found at i:99178262 original size:15 final size:15
Alignment explanation
Indices: 99178207--99178271 Score: 66
Period size: 15 Copynumber: 4.5 Consensus size: 15
99178197 CCCCTTAAAA
*
99178207 CTTAAACCC-TAACC
1 CTTAAACCCATAATC
*
99178221 CTT-AACCCATAAAC
1 CTTAAACCCATAATC
99178235 CATT-AA-CCATAATC
1 C-TTAAACCCATAATC
99178249 CTTAAACCCATAATC
1 CTTAAACCCATAATC
*
99178264 CATAAACC
1 CTTAAACC
99178272 TTACAATAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
13 7 0.16
14 18 0.41
15 19 0.43
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.23
Consensus pattern (15 bp):
CTTAAACCCATAATC
Found at i:99178368 original size:13 final size:13
Alignment explanation
Indices: 99178352--99178378 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
99178342 ATTCAATATT
99178352 TTAAAATTAATAC
1 TTAAAATTAATAC
99178365 TTAAAATTAATAC
1 TTAAAATTAATAC
99178378 T
1 T
99178379 ATCTCTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (13 bp):
TTAAAATTAATAC
Found at i:99178780 original size:12 final size:12
Alignment explanation
Indices: 99178763--99178790 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
99178753 TTTTTCATTC
99178763 AAACGCCGCTAA
1 AAACGCCGCTAA
99178775 AAACGCCGCTAA
1 AAACGCCGCTAA
99178787 AAAC
1 AAAC
99178791 CTGTTTTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.32, G:0.14, T:0.07
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:99181067 original size:54 final size:55
Alignment explanation
Indices: 99180947--99181135 Score: 326
Period size: 54 Copynumber: 3.4 Consensus size: 55
99180937 AAAAAAAAAA
* *
99180947 TTTTGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAATCAAAATT
1 TTTTGGTGCTGGCCTATCAATGGCCGGTACCAAGTACAAAAAAAAAATCAAAATT
99181002 TTTTGGTGCTGGCCTATCAATGGCCGGTACCAAGTAC-AAAAAAAAATCAAAATT
1 TTTTGGTGCTGGCCTATCAATGGCCGGTACCAAGTACAAAAAAAAAATCAAAATT
99181056 TTTTGGTGCTGGCCTATCAATGGCCGGTACCAAGTACAAAAAAAAAAATCAAAATT
1 TTTTGGTGCTGGCCTATCAATGGCCGGTACCAAGTAC-AAAAAAAAAATCAAAATT
* *
99181112 TTTTTGTGCTGGCCTGTCAATGGC
1 TTTTGGTGCTGGCCTATCAATGGC
99181136 TAGCACCAGA
Statistics
Matches: 128, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
54 54 0.42
55 35 0.27
56 39 0.30
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (55 bp):
TTTTGGTGCTGGCCTATCAATGGCCGGTACCAAGTACAAAAAAAAAATCAAAATT
Found at i:99181174 original size:109 final size:105
Alignment explanation
Indices: 99180937--99181202 Score: 336
Period size: 109 Copynumber: 2.4 Consensus size: 105
99180927 ATGAGTTTTT
99180937 AAAAAAAAAATTTTGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAATCAAAATT
1 AAAAAAAAAATTTTGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAATCAAAATT
* *
99181002 TTTTGGTGCTGGCCTATCAATGGCCGGTACCAAGTACAAA
66 TTTTGGTGCTGGCCTATCAATGGCCAGCACCAAGTACAAA
* *
99181042 AAAAAATCAAAATTTTTTGGTGCTGGCCTATCAATGGCCGGTACCAAGTACAAAAAAAAAAATCA
1 AAAAAA--AAAA--TTTTGGTGCTGGCCTGTCAATGGCCGGCACCAAGTAC-AAAAAAAAAATCA
* * * **
99181107 AAATTTTTTTGTGCTGGCCTGTCAATGGCTAGCACCAGAGTACGAGTTT
61 AAATTTTTTGGTGCTGGCCTATCAATGGCCAGCACCA-AGTAC-A--AA
* *
99181156 CAAAAAAAAATTTT-GTGCTGGCTTGTCAATGGCCGGCACCAGAGTAC
1 AAAAAAAAAATTTTGGTGCTGGCCTGTCAATGGCCGGCACCA-AGTAC
99181203 TAGTATTTAA
Statistics
Matches: 138, Mismatches: 13, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
105 6 0.04
107 4 0.03
109 59 0.43
110 54 0.39
111 5 0.04
112 5 0.04
114 5 0.04
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (105 bp):
AAAAAAAAAATTTTGGTGCTGGCCTGTCAATGGCCGGCACCAAGTACAAAAAAAAAATCAAAATT
TTTTGGTGCTGGCCTATCAATGGCCAGCACCAAGTACAAA
Found at i:99181183 original size:53 final size:54
Alignment explanation
Indices: 99180878--99181253 Score: 231
Period size: 55 Copynumber: 6.9 Consensus size: 54
99180868 AAATACCAGT
* * * * * * *
99180878 ATTTTAAAAAAAAATTTGGTTCTGG-TCTGCCAATGACCGGCACCAGGGTATGAG
1 ATTTAAAAAAAAAATTTTGTGCTGGCT-TGTCAATGGCCGGCACCAGAGTACGAG
* *
99180932 TTTTTAAAAAAAAAATTTTGGTGCTGGCCTGTCAATGGCCGGCACCA-AGTAC-A-
1 -ATTTAAAAAAAAAATTTT-GTGCTGGCTTGTCAATGGCCGGCACCAGAGTACGAG
** * * *
99180985 A-AAAAAAAATCAAAATTTTTTGGTGCTGGCCTATCAATGGCCGGTACCA-AGTAC-A-
1 ATTTAAAAAA--AAAA--TTTT-GTGCTGGCTTGTCAATGGCCGGCACCAGAGTACGAG
* * * *
99181040 A--AAAAAAATCAAAATTTTTTGGTGCTGGCCTATCAATGGCCGGTACCA-AGTAC-A-
1 ATTTAAAAAA--AAAA--TTTT-GTGCTGGCTTGTCAATGGCCGGCACCAGAGTACGAG
*** * **
99181094 AAAAAAAAAATCAAAATTTTTTTGTGCTGGCCTGTCAATGGCTAGCACCAGAGTACGAG
1 ATTTAAAAAA--AAAA---TTTTGTGCTGGCTTGTCAATGGCCGGCACCAGAGTACGAG
* *
99181153 -TTTCAAAAAAAAATTTTGTGCTGGCTTGTCAATGGCCGGCACCAGAGTACTAG
1 ATTTAAAAAAAAAATTTTGTGCTGGCTTGTCAATGGCCGGCACCAGAGTACGAG
* *
99181206 TATTTAAAAAAAAAATTTAGAGCTGGCTTGTCAATGGCCGGCACCAGA
1 -ATTTAAAAAAAAAATTTTGTGCTGGCTTGTCAATGGCCGGCACCAGA
99181254 CTTAGTATTA
Statistics
Matches: 278, Mismatches: 29, Indels: 28
0.83 0.09 0.08
Matches are distributed among these distances:
51 6 0.02
53 40 0.14
54 55 0.20
55 98 0.35
56 62 0.22
57 11 0.04
58 6 0.02
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.27
Consensus pattern (54 bp):
ATTTAAAAAAAAAATTTTGTGCTGGCTTGTCAATGGCCGGCACCAGAGTACGAG
Found at i:99181241 original size:55 final size:55
Alignment explanation
Indices: 99181119--99181270 Score: 197
Period size: 55 Copynumber: 2.9 Consensus size: 55
99181109 ATTTTTTTGT
* ** * * * *
99181119 GCTGGCCTGTCAATGGCTAGCACCAGAGTACGAG--TTTCAAAAAAAAATTTTGT
1 GCTGGCTTGTCAATGGCCGGCACCAGAGTACTAGTATTTAAAAAAAAAATTTAGA
99181172 GCTGGCTTGTCAATGGCCGGCACCAGAGTACTAGTATTTAAAAAAAAAATTTAGA
1 GCTGGCTTGTCAATGGCCGGCACCAGAGTACTAGTATTTAAAAAAAAAATTTAGA
*
99181227 GCTGGCTTGTCAATGGCCGGCACCAGACT--TAGTA-TTAAAAAAAA
1 GCTGGCTTGTCAATGGCCGGCACCAGAGTACTAGTATTTAAAAAAAA
99181271 TTTCTTTTTT
Statistics
Matches: 89, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
52 10 0.11
53 35 0.39
55 44 0.49
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (55 bp):
GCTGGCTTGTCAATGGCCGGCACCAGAGTACTAGTATTTAAAAAAAAAATTTAGA
Found at i:99200491 original size:3 final size:3
Alignment explanation
Indices: 99200483--99200540 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
99200473 ATATATATAT
99200483 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
99200531 AAG AAG AAG A
1 AAG AAG AAG A
99200541 TAAATAAAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:99200627 original size:44 final size:45
Alignment explanation
Indices: 99200571--99200667 Score: 117
Period size: 44 Copynumber: 2.2 Consensus size: 45
99200561 AAATCGGAAA
* * *
99200571 AATAAAAATAAGAATGTAAACAATAATC-ATAAAACAACTAAAGAT
1 AATAATAATAAGAATATAAACAAAAATCAATAAAA-AACTAAAGAT
* * *
99200616 AA-AATAATAAGAATATAAATAAAAATCAATAAAAACCTAAATAT
1 AATAATAATAAGAATATAAACAAAAATCAATAAAAAACTAAAGAT
99200660 AATAATAA
1 AATAATAA
99200668 AAATGATAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 31 0.70
45 13 0.30
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (45 bp):
AATAATAATAAGAATATAAACAAAAATCAATAAAAAACTAAAGAT
Found at i:99200656 original size:22 final size:20
Alignment explanation
Indices: 99200614--99200670 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 20
99200604 ACAACTAAAG
* **
99200614 ATAAAATAATAAGAATATAA
1 ATAAAATAATAAAAACCTAA
99200634 ATAAAAATCAATAAAAACCTAA
1 AT-AAAAT-AATAAAAACCTAA
*
99200656 ATATAATAATAAAAA
1 ATAAAATAATAAAAA
99200671 TGATAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 10 0.32
21 9 0.29
22 12 0.39
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (20 bp):
ATAAAATAATAAAAACCTAA
Found at i:99213108 original size:21 final size:21
Alignment explanation
Indices: 99213084--99213125 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
99213074 ATGATGAATG
*
99213084 CAATAATAATACTAAATATAA
1 CAATAATAATACTAAAAATAA
*
99213105 CAATAATAATATTAAAAATAA
1 CAATAATAATACTAAAAATAA
99213126 TAGCAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (21 bp):
CAATAATAATACTAAAAATAA
Found at i:99213133 original size:21 final size:21
Alignment explanation
Indices: 99213097--99213153 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 21
99213087 TAATAATACT
99213097 AAAT-ATAACAATAATAATATTAA
1 AAATAATAACAATAA-AA-A-TAA
*
99213120 AAATAATAGCAATAAAAATAA
1 AAATAATAACAATAAAAATAA
*
99213141 GAATAATAACAAT
1 AAATAATAACAAT
99213154 GATAAAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 14 0.47
22 1 0.03
23 6 0.20
24 9 0.30
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.25
Consensus pattern (21 bp):
AAATAATAACAATAAAAATAA
Found at i:99213148 original size:15 final size:15
Alignment explanation
Indices: 99213101--99213149 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
99213091 AATACTAAAT
*
99213101 ATAACAATAATAATA
1 ATAAAAATAATAATA
* **
99213116 TTAAAAATAATAGCA
1 ATAAAAATAATAATA
*
99213131 ATAAAAATAAGAATA
1 ATAAAAATAATAATA
99213146 ATAA
1 ATAA
99213150 CAATGATAAA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.24
Consensus pattern (15 bp):
ATAAAAATAATAATA
Found at i:99214017 original size:12 final size:13
Alignment explanation
Indices: 99214000--99214032 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
99213990 TTTTTTTTGC
99214000 TTTCTCTCCCCT-
1 TTTCTCTCCCCTG
99214012 TTTCTC-CCCCTG
1 TTTCTCTCCCCTG
99214024 TTTCTCTCC
1 TTTCTCTCC
99214033 TTTTGGCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.26
12 12 0.63
13 2 0.11
ACGTcount: A:0.00, C:0.48, G:0.03, T:0.48
Consensus pattern (13 bp):
TTTCTCTCCCCTG
Found at i:99215498 original size:205 final size:205
Alignment explanation
Indices: 99215126--99215643 Score: 741
Period size: 205 Copynumber: 2.5 Consensus size: 205
99215116 TGGGAACATC
* * * * ** *
99215126 TGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACATAAGGACGCCTAACCATCTTG
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCATAAGGATACCAAACCATCTTG
* **
99215191 GATCTTGCTTCAGTATAAACATCTGAAGGTC-AGATCTGCTATGTATCTGCTCTCCATTGAAGTG
66 GATC-TGCTTCAGCATAAACATCTGAAGG-CGAGATCTGCTATGTATCTGCTCTCCATCAAAGTG
* * * ** * * *
99215255 GAGATGCTAGACTTCGATTTGTTCTCTGACACTACAGAGATGGCAAATCATCTTAGATTTGCTTC
129 AAGATGCCAAACTTCGATTCATTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTC
*
99215320 ATCGTAAACACG
194 ATCGTAAACACA
* *
99215332 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTGAGCACAAGGATACCAAACCATCTTG
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCATAAGGATACCAAACCATCTTG
* * * * *
99215397 GATCTGCTTCAGCATAAACATCCGAAGGCGAGATCTGCTATGTGTTTGCTCTCTATCAAATTGAA
66 GATCTGCTTCAGCATAAACATCTGAAGGCGAGATCTGCTATGTATCTGCTCTCCATCAAAGTGAA
99215462 GATGCCAAACTTCGATTCATTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
131 GATGCCAAACTTCGATTCATTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
*
99215527 CGTAAATACA
196 CGTAAACACA
* *
99215537 TGAAAGCCGAATCAGCTATGTCTTCGATCTGCTCCTTGTAAGCATAAGGATACCAAACCATCTTG
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCATAAGGATACCAAACCATCTTG
*
99215602 GATCTGCTTCAGCATAAACATCTAAAGGCGAGATCTGCTATG
66 GATCTGCTTCAGCATAAACATCTGAAGGCGAGATCTGCTATG
99215644 CTGCAGCCTA
Statistics
Matches: 278, Mismatches: 33, Indels: 3
0.89 0.11 0.01
Matches are distributed among these distances:
204 1 0.00
205 217 0.78
206 60 0.22
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (205 bp):
TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCATAAGGATACCAAACCATCTTG
GATCTGCTTCAGCATAAACATCTGAAGGCGAGATCTGCTATGTATCTGCTCTCCATCAAAGTGAA
GATGCCAAACTTCGATTCATTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
CGTAAACACA
Found at i:99225966 original size:21 final size:21
Alignment explanation
Indices: 99225942--99225983 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
99225932 ATGATGTATG
*
99225942 CAATAATAATACTAAATATAA
1 CAATAATAATACTAAAAATAA
*
99225963 CAATAATAATATTAAAAATAA
1 CAATAATAATACTAAAAATAA
99225984 TAGCAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (21 bp):
CAATAATAATACTAAAAATAA
Found at i:99228097 original size:23 final size:22
Alignment explanation
Indices: 99228054--99228111 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
99228044 AAAAGGTATC
* *
99228054 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
99228075 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
99228098 TGCATATCATATCT
1 TACAAATCATATCT
99228112 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:99228114 original size:19 final size:19
Alignment explanation
Indices: 99228090--99228145 Score: 103
Period size: 19 Copynumber: 2.9 Consensus size: 19
99228080 AATCATATCT
99228090 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
99228109 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
99228128 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
99228146 TGAAGATTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:99228949 original size:44 final size:44
Alignment explanation
Indices: 99228798--99229163 Score: 294
Period size: 44 Copynumber: 8.3 Consensus size: 44
99228788 TGTTCCTTGC
* * * **
99228798 AAACACAAGAATGCCCAAATATGCTATCTTCAACTTGTTTTCTAT
1 AAACACAGGGATG-CCAAATCTGCTATCTTCAACTTGTTCCCTAT
*** * ** * *
99228843 AAACACAGGGATGCC--ATGCTAAAATCTTCGATCTACTTCACTGT
1 AAACACAGGGATGCCAAAT-CTGCTATCTTC-AACTTGTTCCCTAT
* * * * *
99228887 AAGCACAGGAATGTCAAATCTGCTATCTTCGATTTGATT-CCTAT
1 AAACACAGGGATGCCAAATCTGCTATCTTCAACTTG-TTCCCTAT
* *
99228931 AAAAACAGGGATGCCAAATATGCTATCTTCAACTTGTTCCCTAT
1 AAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTAT
** ** * ** *
99228975 AAATGCAGGGATGCC--ATGCTGAAATCTTCGA-TCTGCTTGGCTGT
1 AAACACAGGGATGCCAAAT-CTGCTATCTTCAACT-TG-TTCCCTAT
* * * * * *
99229019 AAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 AAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTAT
*
99229063 AAACACAGGGATGCCAAATCTGCTATCTTTAACTTGTTCCCTAT
1 AAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTAT
99229107 AAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTAT
1 AAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTAT
* *
99229151 AAATACAAGGATG
1 AAACACAGGGATG
99229164 TCATGCTGAA
Statistics
Matches: 248, Mismatches: 61, Indels: 25
0.74 0.18 0.07
Matches are distributed among these distances:
42 5 0.02
43 20 0.08
44 184 0.74
45 34 0.14
46 5 0.02
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.31
Consensus pattern (44 bp):
AAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTAT
Found at i:99228953 original size:132 final size:131
Alignment explanation
Indices: 99228769--99229122 Score: 512
Period size: 132 Copynumber: 2.7 Consensus size: 131
99228759 TAAAGGTTAG
* *
99228769 ATCTGCTATGTCTTCGATTTGTTCCT-TGCAAACACAAGAATGCCCAAATATGCTATCTTCAACT
1 ATCTGCTA--TCTTCGATTTGTTCCTAT--AAACACAGGGATG-CCAAATATGCTATCTTCAACT
**
99228833 TGTTTTCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTACTTCACTGTAAGCACAGGAA
61 TGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTACTTCACTGTAAGCACAGGAA
99228898 TGTCAA
126 TGTCAA
*
99228904 ATCTGCTATCTTCGATTTGATTCCTATAAAAACAGGGATGCCAAATATGCTATCTTCAACTTGTT
1 ATCTGCTATCTTCGATTTG-TTCCTATAAACACAGGGATGCCAAATATGCTATCTTCAACTTGTT
** * * **
99228969 CCCTATAAATGCAGGGATGCCATGCTGAAATCTTCGATCTGCTTGGCTGTAAGCACAGGAATGTC
65 CCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTC
*
99229034 AG
130 AA
* *
99229036 ATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTTAACTTGTT
1 ATCTGCTATCTTCGATTTGTT-CCTATAAACACAGGGATGCCAAATATGCTATCTTCAACTTGTT
99229101 CCCTATAAACACAGGGATGCCA
65 CCCTATAAACACAGGGATGCCA
99229123 AATCTGCTAT
Statistics
Matches: 199, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
131 2 0.01
132 162 0.81
133 21 0.11
134 5 0.03
135 9 0.05
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (131 bp):
ATCTGCTATCTTCGATTTGTTCCTATAAACACAGGGATGCCAAATATGCTATCTTCAACTTGTTC
CCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCA
A
Found at i:99229266 original size:44 final size:44
Alignment explanation
Indices: 99229190--99229277 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
99229180 GATCTGCCCT
*
99229190 CTGACAATACAGAGACGCCAAATCTACTATCTTCGAACTGCTTC
1 CTGACAATACAGAGACGCCAAATCTACTATCTTAGAACTGCTTC
* *
99229234 CTGACAATACAGAGACGCCAAATCT-GTCATCTTAGATCTGCTTC
1 CTGACAATACAGAGACGCCAAATCTACT-ATCTTAGAACTGCTTC
99229278 GATGTAAGCA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 1 0.03
44 39 0.98
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (44 bp):
CTGACAATACAGAGACGCCAAATCTACTATCTTAGAACTGCTTC
Found at i:99229577 original size:84 final size:85
Alignment explanation
Indices: 99229298--99230113 Score: 1122
Period size: 84 Copynumber: 9.6 Consensus size: 85
99229288 TCTGAAGGTC
* * * ** **
99229298 AGATCTGCTATATCTTAGCCTATTACCCTACTGCTTAGGGAGTTAAGGCG-AGTCTTTAATCCAC
1 AGATCTG-TA-ATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCTTCGATCTGC
99229362 TCCACTACTGCTTAGGGAGATA
64 TCCACTACTGCTTAGGGAGATA
* * * *
99229384 GGATTTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCGCATCGTCTTCGATCTAC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA--GTCTTCGATCTGC
* *
99229449 TCCGCTATTGCTTAGGGAGATA
64 TCCACTACTGCTTAGGGAGATA
*
99229471 AGATCTATAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA-TCTTCGATCTGCTC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCTTCGATCTGCTC
*
99229535 CACTACTGCTTAGGAAGATA
66 CACTACTGCTTAGGGAGATA
** * * * *
99229555 AGATCTACAATTTTAACCTGTTACCCTACTGCTTAGGGGATTAAGTCG-AGTCTTCGATCTGATC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCTTCGATCTGCTC
*
99229619 CACTACTACTTAGGGAGATA
66 CACTACTGCTTAGGGAGATA
* * * * *
99229639 AGATCTGTAAATTTAACCTGTTACCCTACTGTTTAAGGGATTAAGGCG-AGTCTTCGATCTGCTC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCTTCGATCTGCTC
99229703 CACTACTGCTTAGGGAGATA
66 CACTACTGCTTAGGGAGATA
* *
99229723 AGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA--GTCTTCGATCTGC
** *
99229788 TCTGCTACTGCTTAAGGAGATA
64 TCCACTACTGCTTAGGGAGATA
*
99229810 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG-GGTCTTCGATCTGCTC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCTTCGATCTGCTC
99229874 CACTACTGCTTAGGGAGATA
66 CACTACTGCTTAGGGAGATA
*
99229894 AGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCATCGTCTTCGATCTGC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA--GTCTTCGATCTGC
* * *
99229959 TTCGCTACTACTTAGGGAGATA
64 TCCACTACTGCTTAGGGAGATA
* * * *
99229981 AGATTTGTAATTTTAGCCTGTTACCCTACTGCTTATGGAGTTAAGGCG-GGTCTTCGATCTGCTC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCTTCGATCTGCTC
99230045 CACTACTGCTTAGGGAGATA
66 CACTACTGCTTAGGGAGATA
* * *
99230065 AGATCTGCAATTTTAGCCTGTTACCCCACTGCTTAGGGGATTAAGGCGC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGC
99230114 TGAATTTTGT
Statistics
Matches: 650, Mismatches: 69, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
83 1 0.00
84 410 0.63
85 4 0.01
86 5 0.01
87 230 0.35
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.33
Consensus pattern (85 bp):
AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCAGTCTTCGATCTGCTC
CACTACTGCTTAGGGAGATA
Found at i:99229782 original size:255 final size:253
Alignment explanation
Indices: 99229298--99230112 Score: 1138
Period size: 255 Copynumber: 3.2 Consensus size: 253
99229288 TCTGAAGGTC
* * ** *
99229298 AGATCTGCTATATCTTAGCCTATTACCCTACTGCTTA-GGGAGTTAAGGCGAGTCTTTAATC-CA
1 AGATCTGC-A-ATTTTAGCCTGTTACCCTACTGCTTAGGGGA-TTAAGGCGAGTCTTCGATCTGA
* * *
99229361 CTCCACTACTGCTTAGGGAGATAGGATTTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGTTT
63 -TCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGATT
* * *
99229426 AAGGCGCATCGTCTTCGATCTACTCCGCTATTGCTTAGGGAGATAAGATCTATAATTTTAGCCTG
127 AAGGCGCA-CGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTTTAGCCTG
99229491 TTACCCTACTGCTTAGGGGGTTAAGGCGCA-TCTTCGATCTGCTCCACTACTGCTTAGGAAGATA
191 TTACCCTACTGCTTAGGGGGTTAAGG-GCAGTCTTCGATCTGCTCCACTACTGCTTAGG-AGATA
* * *
99229555 AGATCTACAATTTTAACCTGTTACCCTACTGCTTAGGGGATTAAGTCGAGTCTTCGATCTGATCC
1 AGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGATCC
* * * * *
99229620 ACTACTACTTAGGGAGATAAGATCTGTAAATTTAACCTGTTACCCTACTGTTTAAGGGATTAAGG
66 ACTACTGCTTAGGGAGATAAGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGG
* *
99229685 CG-A-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACC
131 CGCACGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTTTAGCCTGTTACC
**
99229748 CTACTGCTTAGGGGGTTAAGGTGCATCGTCTTCGATCTGCTCTGCTACTGCTTAAGGAGATA
196 CTACTGCTTAGGGGGTTAAGG-GCA--GTCTTCGATCTGCTCCACTACTGCTT-AGGAGATA
* * * *
99229810 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGGGTCTTCGATCTGCTCC
1 AGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGATCC
* *
99229875 ACTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGG
66 ACTACTGCTTAGGGAGATAAGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGG
* * *
99229940 CGCATCGTCTTCGATCTGCTTCGCTACTACTTAGGGAGATAAGATTTGTAATTTTAGCCTGTTAC
131 CGCA-CGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTTTAGCCTGTTAC
* * *
99230005 CCTACTGCTTATGGAGTTAA-GGCGGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
195 CCTACTGCTTAGGGGGTTAAGGGC-AGTCTTCGATCTGCTCCACTACTGCTTA-GGAGATA
*
99230065 AGATCTGCAATTTTAGCCTGTTACCCCACTGCTTAGGGGATTAAGGCG
1 AGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGGCG
99230113 CTGAATTTTG
Statistics
Matches: 496, Mismatches: 51, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
252 79 0.16
254 2 0.00
255 323 0.65
256 12 0.02
257 8 0.02
258 72 0.15
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.33
Consensus pattern (253 bp):
AGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGATCC
ACTACTGCTTAGGGAGATAAGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGG
CGCACGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTTTAGCCTGTTACC
CTACTGCTTAGGGGGTTAAGGGCAGTCTTCGATCTGCTCCACTACTGCTTAGGAGATA
Found at i:99229876 original size:171 final size:171
Alignment explanation
Indices: 99229298--99230113 Score: 1226
Period size: 171 Copynumber: 4.8 Consensus size: 171
99229288 TCTGAAGGTC
* * * ** **
99229298 AGATCTGCTATATCTTAGCCTATTACCCTACTGCTTAGGGAGTTAAGGCGAGTCTTTAATCCACT
1 AGATCTG-TA-ATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCT
* * * *
99229363 CCACTACTGCTTAGGGAGATAGGATTTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAA
64 CCACTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAA
* * *
99229428 GGCGCATCGTCTTCGATCTACTCCGCTATTGCTTAGGGAGATA
129 GGCGCATCGTCTTCGATCTGCTCCGCTACTACTTAGGGAGATA
*
99229471 AGATCTATAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGCA-TCTTCGATCTGCTC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG-AGTCTTCGATCTGCTC
* * *
99229535 CACTACTGCTTAGGAAGATAAGATCTACAATTTTAACCTGTTACCCTACTGCTTAGGGGATTAAG
65 CACTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAG
* * *
99229600 TCG-A--GTCTTCGATCTGATCCACTACTACTTAGGGAGATA
130 GCGCATCGTCTTCGATCTGCTCCGCTACTACTTAGGGAGATA
* * * * *
99229639 AGATCTGTAAATTTAACCTGTTACCCTACTGTTTAAGGGATTAAGGCGAGTCTTCGATCTGCTCC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
*
99229704 ACTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGG
66 ACTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGG
* * * *
99229769 TGCATCGTCTTCGATCTGCTCTGCTACTGCTTAAGGAGATA
131 CGCATCGTCTTCGATCTGCTCCGCTACTACTTAGGGAGATA
*
99229810 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGGGTCTTCGATCTGCTCC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
*
99229875 ACTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGG
66 ACTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGG
*
99229940 CGCATCGTCTTCGATCTGCTTCGCTACTACTTAGGGAGATA
131 CGCATCGTCTTCGATCTGCTCCGCTACTACTTAGGGAGATA
* * * *
99229981 AGATTTGTAATTTTAGCCTGTTACCCTACTGCTTATGGAGTTAAGGCGGGTCTTCGATCTGCTCC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
*
99230046 ACTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACCCCACTGCTTAGGGGATTAAGG
66 ACTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGG
99230111 CGC
131 CGC
99230114 TGAATTTTGT
Statistics
Matches: 584, Mismatches: 54, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
167 1 0.00
168 148 0.25
169 1 0.00
170 1 0.00
171 424 0.73
172 3 0.01
173 6 0.01
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.33
Consensus pattern (171 bp):
AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
ACTACTGCTTAGGGAGATAAGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAGGGGATTAAGG
CGCATCGTCTTCGATCTGCTCCGCTACTACTTAGGGAGATA
Found at i:99231067 original size:7 final size:7
Alignment explanation
Indices: 99231055--99231120 Score: 66
Period size: 7 Copynumber: 9.4 Consensus size: 7
99231045 GGCCTCTCCA
99231055 TTTTCTT
1 TTTTCTT
99231062 TTTTCTT
1 TTTTCTT
99231069 TTTTCTCT
1 TTTTCT-T
99231077 TTTT-TAT
1 TTTTCT-T
*
99231084 TTTTATT
1 TTTTCTT
*
99231091 TTTT-TC
1 TTTTCTT
99231097 TTTTCTT
1 TTTTCTT
99231104 TTTTCTT
1 TTTTCTT
99231111 CTTTT-TT
1 -TTTTCTT
99231118 TTT
1 TTT
99231121 GAAATAGAAG
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
6 8 0.15
7 34 0.65
8 10 0.19
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTCTT
Found at i:99231081 original size:23 final size:21
Alignment explanation
Indices: 99231055--99231117 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
99231045 GGCCTCTCCA
*
99231055 TTTTCTTTTTTCTTTTTTCTCT
1 TTTTTTTTTTTCTTTTTTCT-T
99231077 TTTTTATTTTTAT-TTTTTTCTT
1 TTTTT-TTTTT-TCTTTTTTCTT
*
99231099 TTCTTTTTTCTTCTTTTTT
1 TT-TTTTTTTTTCTTTTTT
99231118 TTTGAAATAG
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
21 1 0.03
22 17 0.49
23 16 0.46
24 1 0.03
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (21 bp):
TTTTTTTTTTTCTTTTTTCTT
Found at i:99236395 original size:19 final size:19
Alignment explanation
Indices: 99236339--99236410 Score: 105
Period size: 19 Copynumber: 3.9 Consensus size: 19
99236329 AATCATATCT
99236339 TCTAAGATTGCAT-TCATA
1 TCTAAGATTGCATATCATA
99236357 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
* *
99236374 TCTAATATTGCATATCACA
1 TCTAAGATTGCATATCATA
99236393 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
99236411 TGAAGATTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
16 1 0.02
17 14 0.30
18 10 0.21
19 22 0.47
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:99253960 original size:29 final size:29
Alignment explanation
Indices: 99253914--99253977 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
99253904 CTGACGTGGC
*
99253914 TAAACCTTAAATCCTAAATCTCAAAACCT
1 TAAACCTTAAATCATAAATCTCAAAACCT
* * *
99253943 TAAATCTTAAATCATAAATCTTAAAACTT
1 TAAACCTTAAATCATAAATCTCAAAACCT
99253972 TAAACC
1 TAAACC
99253978 CATAAACCTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (29 bp):
TAAACCTTAAATCATAAATCTCAAAACCT
Found at i:99253962 original size:14 final size:14
Alignment explanation
Indices: 99253914--99253967 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
99253904 CTGACGTGGC
* *
99253914 TAAACCTTAAATCC
1 TAAATCTTAAATCA
* * *
99253928 TAAATCTCAAAACCT
1 TAAATCT-TAAATCA
99253943 TAAATCTTAAATCA
1 TAAATCTTAAATCA
99253957 TAAATCTTAAA
1 TAAATCTTAAA
99253968 ACTTTAAACC
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
14 21 0.66
15 11 0.34
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAATCTTAAATCA
Found at i:99254644 original size:30 final size:31
Alignment explanation
Indices: 99254585--99254648 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
99254575 ACTTAACAAG
99254585 CAAATGCTTCTAAAATAATAAAAAAAATTAA
1 CAAATGCTTCTAAAATAATAAAAAAAATTAA
**
99254616 CAAATGCCTT-TAAAATAAT-ACGAAAATTAA
1 CAAATG-CTTCTAAAATAATAAAAAAAATTAA
99254646 CAA
1 CAA
99254649 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 12 0.40
31 15 0.50
32 3 0.10
ACGTcount: A:0.58, C:0.12, G:0.05, T:0.25
Consensus pattern (31 bp):
CAAATGCTTCTAAAATAATAAAAAAAATTAA
Found at i:99258253 original size:3 final size:3
Alignment explanation
Indices: 99258245--99258354 Score: 50
Period size: 3 Copynumber: 36.7 Consensus size: 3
99258235 AAAGTAGTGC
* * *
99258245 TAA TAA TAA TAA TAA TAA TAA T-C TAT TAA GTTA TAA TGAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA T-AA TAA TAA
* * * * *
99258290 TGA TAA TGA TGA T-A TAT TAGA TAA TAA TAG TAA -AA T-A TAA GTAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA -TAA
* *
99258334 CAA TAA TAAA TTA TAA TAA TA
1 TAA TAA T-AA TAA TAA TAA TA
99258355 TGAGAATAAC
Statistics
Matches: 81, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
2 9 0.11
3 60 0.74
4 12 0.15
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:99258511 original size:16 final size:15
Alignment explanation
Indices: 99258482--99258524 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
99258472 TATACGTATG
*
99258482 AAAAATAATGATAGT
1 AAAAATAATAATAGT
99258497 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
99258513 AATAATAATAAT
1 AAAAATAATAAT
99258525 GGAGTGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:99258624 original size:3 final size:3
Alignment explanation
Indices: 99258616--99258645 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
99258606 ACACTACCAT
99258616 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
99258646 TTAAAAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:99259135 original size:29 final size:28
Alignment explanation
Indices: 99259090--99259167 Score: 115
Period size: 27 Copynumber: 2.8 Consensus size: 28
99259080 TGATTTTTTG
99259090 TTCTTGAATCTCAAAAAAAGAAAAATCCCC
1 TTCTTGAATCTCAAAAAAA-AAAAAT-CCC
*
99259120 TT-TTGAATCTC-AAAAAAAAAAATCTC
1 TTCTTGAATCTCAAAAAAAAAAAATCCC
99259146 TTCTTGAATCTCAAAAAAAAAA
1 TTCTTGAATCTCAAAAAAAAAA
99259168 TCTATTCTCT
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
26 4 0.09
27 15 0.33
28 15 0.33
29 9 0.20
30 2 0.04
ACGTcount: A:0.50, C:0.18, G:0.05, T:0.27
Consensus pattern (28 bp):
TTCTTGAATCTCAAAAAAAAAAAATCCC
Found at i:99259687 original size:44 final size:44
Alignment explanation
Indices: 99259623--99259804 Score: 201
Period size: 44 Copynumber: 4.2 Consensus size: 44
99259613 TGAGTTCTTG
*
99259623 ATCTGCT-TCTTCGATCTGTTCCCCATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCCATAAGCACAGGGATGCCAA
* * *
99259666 ATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCGATC-TGTTCCCCATAAGCACAGGGATGCCAA
** * * * * *
99259708 ATGCTGAAATTTTCGATCTGCTTCACCATAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCCATAAGCACAGGGATGCCAA
*
99259754 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCCATAAGCACAGGGATGCCAA
99259798 ATCTGCT
1 ATCTGCT
99259805 GTTTTTAACT
Statistics
Matches: 111, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
42 2 0.02
43 19 0.17
44 74 0.67
45 14 0.13
46 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCCATAAGCACAGGGATGCCAA
Found at i:99260328 original size:205 final size:205
Alignment explanation
Indices: 99259961--99260874 Score: 1425
Period size: 205 Copynumber: 4.4 Consensus size: 205
99259951 TGGGAACATC
* * * * * *
99259961 TGAAAGTCAAATCTGCTATGTTTTCGATTTGTTCTTTGTAAGCACAAGGATGCCAAATCATCTTG
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
* * * * **
99260026 GATCTTGCTTTAGT-ATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCATTGAAGTG
66 GATC-TGCTTCAGTGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
* * * *
99260090 GAGATACCAGACTTCGATTTGTTCTCTGACAATACAGAGACTACAAATCATCTTAGATTTGCTTC
129 AAGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTC
99260155 ATCGTAATCACG
194 ATCGTAATCACG
* *
99260167 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCAAACCATCTTG
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
*
99260232 GATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
66 GATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
* * *
99260297 GATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGATAAATCATCTTAGAGTTGCTTCAT
131 GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
99260362 CGTAATCACG
196 CGTAATCACG
99260372 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
99260437 GATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
66 GATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
* *
99260502 GATGCCAAACTTCGATTTGTTATCTGACAATACAGAGACGACAAATCATCTTAGATTTGTTTCAT
131 GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
99260567 CGTAATCACG
196 CGTAATCACG
*
99260577 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTG
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
*
99260642 GATCTGCTTCAGTGAAATCATCTGAAGGTGAGATATGCTATGTGTCTGCTCTCCATCAAAGTGAA
66 GATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
99260707 GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
131 GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
99260772 CGTAATCACG
196 CGTAATCACG
*
99260782 TGAAAGCCAAATCAGCTATAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGA
1 T----G-------A---A-AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGA
99260847 TGCCAAACCATCTTGGATCTGCTTCAGT
51 TGCCAAACCATCTTGGATCTGCTTCAGT
99260875 ATAACATCTG
Statistics
Matches: 660, Mismatches: 32, Indels: 18
0.93 0.05 0.03
Matches are distributed among these distances:
205 519 0.79
206 64 0.10
209 1 0.00
216 1 0.00
219 1 0.00
220 74 0.11
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (205 bp):
TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
GATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
CGTAATCACG
Found at i:99260806 original size:15 final size:15
Alignment explanation
Indices: 99260786--99260815 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
99260776 ATCACGTGAA
99260786 AGCCAAATCAGCTAT
1 AGCCAAATCAGCTAT
99260801 AGCCAAATCAGCTAT
1 AGCCAAATCAGCTAT
99260816 GTCTTCGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (15 bp):
AGCCAAATCAGCTAT
Found at i:99268548 original size:13 final size:15
Alignment explanation
Indices: 99268518--99268548 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
99268508 TTCCAGATTT
99268518 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
99268533 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
99268548 T
1 T
99268549 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:99268634 original size:15 final size:14
Alignment explanation
Indices: 99268592--99268641 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
99268582 ATAACTTTGA
*
99268592 ATGCAAATGATGTG
1 ATGCAAATGATGAG
99268606 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
99268621 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
99268635 ATGCAAA
1 ATGCAAA
99268642 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:99272397 original size:75 final size:75
Alignment explanation
Indices: 99272309--99272476 Score: 217
Period size: 75 Copynumber: 2.3 Consensus size: 75
99272299 GGTTTTCCTC
* * **
99272309 ATTGAAATACCATACCTACATTTTTCA-A-CTCGGTATGGGA-AATGCCATACCTACATTTCTTA
1 ATTGAAATACCATACCTACATTTTTCATAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
99272371 ACTCAGTATGG
65 ACTCAGTATGG
99272382 ATTTGATAATACCATACCTACA--TTTCATAGCTCAGTATGGATAATACCATACCTACATTTCAC
1 A-TTGA-AATACCATACCTACATTTTTCATAGCTCAGTATGGATAATACCATACCTACATTTCAC
99272445 AACTCAGTATGG
64 AACTCAGTATGG
99272457 A-TG--ATACCATACCTACATTT
1 ATTGAAATACCATACCTACATTT
99272477 CACACTTTTC
Statistics
Matches: 84, Mismatches: 4, Indels: 15
0.82 0.04 0.15
Matches are distributed among these distances:
70 14 0.17
72 1 0.01
73 8 0.10
74 8 0.10
75 53 0.63
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (75 bp):
ATTGAAATACCATACCTACATTTTTCATAGCTCAGTATGGATAATACCATACCTACATTTCACAA
CTCAGTATGG
Found at i:99272492 original size:35 final size:35
Alignment explanation
Indices: 99272314--99272480 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
99272304 TCCTCATTGA
** *
99272314 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
99272349 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
* *
99272389 AATACCATACCTACATTTCATAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
99272424 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
99272459 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
99272481 CTTTTCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 86 0.74
39 3 0.03
40 28 0.24
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:99279846 original size:35 final size:35
Alignment explanation
Indices: 99279802--99279968 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
99279792 TCCTCATTGA
** *
99279802 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
99279837 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
99279877 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
99279912 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
99279947 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
99279969 CTTTTCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:99279885 original size:75 final size:73
Alignment explanation
Indices: 99279797--99279968 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
99279787 GGTTTTCCTC
** * * **
99279797 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
99279861 TCAGTATGG
65 TCAGTATGG
*
99279870 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
99279935 CTCAGTATGG
64 CTCAGTATGG
99279945 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
99279969 CTTTTCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:99282642 original size:3 final size:3
Alignment explanation
Indices: 99282634--99282887 Score: 100
Period size: 3 Copynumber: 86.0 Consensus size: 3
99282624 AAAGGAAAAT
* * * *
99282634 ATA ATA ATA ATA ATA ATA A-A AT- ACA ACA ATA ATA ATA GTA A-A AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * **
99282679 TATA ATA A-C ATA ATA AT- ATA ATA GTA ATA GTA ACA AT- ATG ACG
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
99282722 ATA ATA GTA AAA ATA AT- ATA TTAA ATA ATA GTA ATA A-A AGTA GTG
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA A-TA ATA
* * * *
99282767 CTA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- CTA TTA AGTT ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
* * * * *
99282812 ATGA A-A ATA ATG ATA ATG ATG AT- ATA TTA GATA ATA ATA GTA A-A
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* *
99282856 ATA ATA AGTA ACA ATA ATAA ATT ATA ATA ATA
1 ATA ATA A-TA ATA ATA AT-A ATA ATA ATA ATA
99282888 GTGATGAGAA
Statistics
Matches: 186, Mismatches: 45, Indels: 40
0.69 0.17 0.15
Matches are distributed among these distances:
2 21 0.11
3 148 0.80
4 17 0.09
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:99282642 original size:8 final size:8
Alignment explanation
Indices: 99282631--99282701 Score: 52
Period size: 8 Copynumber: 8.1 Consensus size: 8
99282621 AATAAAGGAA
99282631 AATATAAT
1 AATATAAT
99282639 AATAATAAT
1 AAT-ATAAT
*
99282648 AATAAAAT
1 AATATAAT
*
99282656 ACAACAATAAT
1 --AA-TATAAT
*
99282667 AATAGTAAA
1 AATA-TAAT
99282676 AGATATAAT
1 A-ATATAAT
*
99282685 AACATAAT
1 AATATAAT
99282693 AATATAAT
1 AATATAAT
99282701 A
1 A
99282702 GTAATAGTAA
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
8 22 0.45
9 18 0.37
10 5 0.10
11 4 0.08
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (8 bp):
AATATAAT
Found at i:99282906 original size:16 final size:16
Alignment explanation
Indices: 99282887--99282918 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
99282877 TTATAATAAT
99282887 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
99282903 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
99282919 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:99283052 original size:16 final size:15
Alignment explanation
Indices: 99283023--99283065 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
99283013 TATACGTATG
*
99283023 AAAAATAATGATAGT
1 AAAAATAATAATAGT
99283038 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
99283054 AATAATAATAAT
1 AAAAATAATAAT
99283066 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:99283686 original size:29 final size:28
Alignment explanation
Indices: 99283644--99283718 Score: 100
Period size: 26 Copynumber: 2.7 Consensus size: 28
99283634 GATTTTTTGT
99283644 TCTTGAATCTCAAAAAAAGAAAAATCCCC
1 TCTTGAATCTCAAAAAAA-AAAAATCCCC
* *
99283673 TCTTGAATCTC--AAAAAAAAAATCTCT
1 TCTTGAATCTCAAAAAAAAAAAATCCCC
*
99283699 TCTTGAATATCAAAAAAAAA
1 TCTTGAATCTCAAAAAAAAA
99283719 TCTCTTCTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 18 0.44
27 5 0.12
28 7 0.17
29 11 0.27
ACGTcount: A:0.51, C:0.19, G:0.05, T:0.25
Consensus pattern (28 bp):
TCTTGAATCTCAAAAAAAAAAAATCCCC
Found at i:99283713 original size:25 final size:26
Alignment explanation
Indices: 99283643--99283726 Score: 98
Period size: 26 Copynumber: 3.2 Consensus size: 26
99283633 TGATTTTTTG
* *
99283643 TTCTTGAATCTCAAAAAAAGAAAAATCCC
1 TTCTTGAATATC--AAAAA-AAAAATCTC
* *
99283672 CTCTTGAATCTCAAAAAAAAAATCTC
1 TTCTTGAATATCAAAAAAAAAATCTC
99283698 TTCTTGAATATC-AAAAAAAAATCTC
1 TTCTTGAATATCAAAAAAAAAATCTC
99283723 TTCT
1 TTCT
99283727 CTCCAAAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
25 17 0.33
26 18 0.35
27 5 0.10
29 11 0.22
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (26 bp):
TTCTTGAATATCAAAAAAAAAATCTC
Found at i:99296926 original size:28 final size:28
Alignment explanation
Indices: 99296886--99296942 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
99296876 ACAAATACCT
99296886 AAGAATACGTTTTAATGCTACCAAGTGC
1 AAGAATACGTTTTAATGCTACCAAGTGC
99296914 AAGAATACGTTTTAATGCTACCAAGTGC
1 AAGAATACGTTTTAATGCTACCAAGTGC
99296942 A
1 A
99296943 GATTAGTGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (28 bp):
AAGAATACGTTTTAATGCTACCAAGTGC
Found at i:99300184 original size:5 final size:5
Alignment explanation
Indices: 99300174--99300218 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
99300164 ATCCTAAAAT
* *
99300174 AATAA AATAA AA-ATA AATAA AACAA AATAA AACAA AATAA AATAA
1 AATAA AATAA AATA-A AATAA AATAA AATAA AATAA AATAA AATAA
99300219 TATCTTCTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
4 1 0.03
5 32 0.94
6 1 0.03
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (5 bp):
AATAA
Found at i:99300193 original size:10 final size:10
Alignment explanation
Indices: 99300177--99300215 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
99300167 CTAAAATAAT
99300177 AAAATAAAA-
1 AAAATAAAAC
99300186 ATAAATAAAAC
1 A-AAATAAAAC
99300197 AAAATAAAAC
1 AAAATAAAAC
99300207 AAAATAAAA
1 AAAATAAAA
99300216 TAATATCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 1 0.04
10 26 0.93
11 1 0.04
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.13
Consensus pattern (10 bp):
AAAATAAAAC
Found at i:99300194 original size:15 final size:15
Alignment explanation
Indices: 99300169--99300215 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
99300159 ACTTAATCCT
99300169 AAAAT-AATAAAATA
1 AAAATAAATAAAATA
*
99300183 AAAATAAATAAAA-C
1 AAAATAAATAAAATA
*
99300197 AAAATAAAACAAAATA
1 AAAAT-AAATAAAATA
99300213 AAA
1 AAA
99300216 TAATATCTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 10 0.37
15 14 0.52
16 3 0.11
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (15 bp):
AAAATAAATAAAATA
Found at i:99308155 original size:28 final size:28
Alignment explanation
Indices: 99308119--99308192 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
99308109 ATATATACAC
* ***
99308119 AATTTGCACACTTAGTGCTCAATATTTA
1 AATTCGCACACTTAGTGCTCAATAACCA
99308147 AATTCGCACACTTAGTGCTCAATAACCA
1 AATTCGCACACTTAGTGCTCAATAACCA
*
99308175 CATTCGCACACTTAGTGC
1 AATTCGCACACTTAGTGC
99308193 AAGATTCACA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (28 bp):
AATTCGCACACTTAGTGCTCAATAACCA
Found at i:99315200 original size:65 final size:65
Alignment explanation
Indices: 99315090--99315217 Score: 175
Period size: 65 Copynumber: 2.0 Consensus size: 65
99315080 CAAGCGAGCT
* * **
99315090 TAACAGGACGCTCATAAAGAGTTACGTTTATGTCCGCAATGTATGCAAGATCACAACCGATCGCA
1 TAACAGGACGCTCACAAAGAGCTACGTTTATGTCCGCAACATATGCAAGATCACAACCGATCGCA
* * * * *
99315155 TAACAGGACGCTCACAAATAGCTGCGTTTGTGTCCGCAACATATGCAGGATCACAATCGATCG
1 TAACAGGACGCTCACAAAGAGCTACGTTTATGTCCGCAACATATGCAAGATCACAACCGATCG
99315218 AATCATGTAA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
65 54 1.00
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (65 bp):
TAACAGGACGCTCACAAAGAGCTACGTTTATGTCCGCAACATATGCAAGATCACAACCGATCGCA
Found at i:99315696 original size:21 final size:21
Alignment explanation
Indices: 99315672--99315712 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
99315662 GAATTTAACA
* *
99315672 TCAATTTAATTCATTTCATAC
1 TCAATTAAATTCAATTCATAC
99315693 TCAATTAAATTCAATTCATA
1 TCAATTAAATTCAATTCATA
99315713 TCCTAGGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44
Consensus pattern (21 bp):
TCAATTAAATTCAATTCATAC
Found at i:99319154 original size:19 final size:20
Alignment explanation
Indices: 99319138--99319183 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
99319128 AGATTTATCA
*
99319138 ATAATTTATTA-TATTATTC
1 ATAATATATTACTATTATTC
99319157 ATAATATATTACTATT-TT-
1 ATAATATATTACTATTATTC
99319175 ATAAT-TATT
1 ATAATATATT
99319184 TATAAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 4 0.16
18 5 0.20
19 12 0.48
20 4 0.16
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (20 bp):
ATAATATATTACTATTATTC
Done.