Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 306 of 352
Found at i:100147366 original size:166 final size:165
Alignment explanation
Indices: 100147094--100147792 Score: 717
Period size: 166 Copynumber: 4.2 Consensus size: 165
100147084 TCTGTCTTCA
* ** ***
100147094 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC-T--CAAAACACGTTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACACGCCAAGGTATTTTCAAT
*
100147156 TTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCTCACGTC-G
65 TTCTGATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCTCACGTCTG
*
100147220 AGCTATTTTCAAATTTTGTTTTTCAAATTCTATTTTTC
129 AGGTATTTTCAAATTTTGTTTTTCAAATT-TATTTTTC
* *
100147258 AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTATTCTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTATTTTCAATT
* * *
100147323 CCTGTTTTTCAAAAAAATCAACTCTTATTGCGAGAGGTGAGTTGAGCCTCAGGTCTCACG-CTGA
66 TCTGATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCTCACGTCTGA
* *
100147387 GGTATTTTC-AATTTCTGCTTTTC-ACTTTATGTTTGTC
130 GGTATTTTCAAATTT-TGTTTTTCAAATTTAT-TTT-TC
* *
100147424 AAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTATTTTTAAT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTATTTTCAAT
** * *
100147489 TTCTGATCGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCG-CTCACATGCTG
65 TTCTGATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCTCACGT-CTG
** *
100147551 AGGTATTTTCAGTTTTTGTTTTTCAATTTATATTTTTC
129 AGGTATTTTCAAATTTTGTTTTTCAAATT-TATTTTTC
* * * * * *
100147589 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTATTTTC-AAT
* * * * * * *
100147654 TT-TGCTTTTCAGTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTAAACTTTGG-CTCACGT
65 TTCTGATTTTCA----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCTCACGT
* * * *
100147717 GTTGAGCTATTTTC-AATTTCTGTTTTT--AATTTCTGTTTTT
126 -CTGAGGTATTTTCAAATTT-TGTTTTTCAAATTTAT-TTTTC
* * **
100147757 AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGC
100147793 TCAAGATCAC
Statistics
Matches: 453, Mismatches: 59, Indels: 41
0.82 0.11 0.07
Matches are distributed among these distances:
163 5 0.01
164 97 0.21
165 76 0.17
166 102 0.23
167 73 0.16
168 10 0.02
169 31 0.07
170 59 0.13
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (165 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTATTTTCAATT
TCTGATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCTCACGTCTGAG
GTATTTTCAAATTTTGTTTTTCAAATTTATTTTTC
Found at i:100147390 original size:77 final size:77
Alignment explanation
Indices: 100147258--100147410 Score: 209
Period size: 77 Copynumber: 2.0 Consensus size: 77
100147248 TCTATTTTTC
*
100147258 AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTATTCTCAATT
1 AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTAGGCTCACACGCCAAGGTATTCTCAATT
*
100147323 CCTGTTTTTCAA
66 CCTGCTTTTCAA
* * * ** *
100147335 AAAAATCAACTCTTATTGCGAGAGGTGAGTTGAGCCTCAGG-TCTCACGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCT-AGGCTCACACGCCAAGGTATTCTCAAT
*
100147399 TTCTGCTTTTCA
65 TCCTGCTTTTCA
100147411 CTTTATGTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
77 64 0.97
78 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (77 bp):
AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTAGGCTCACACGCCAAGGTATTCTCAATT
CCTGCTTTTCAA
Found at i:100147480 original size:90 final size:91
Alignment explanation
Indices: 100147325--100147493 Score: 243
Period size: 90 Copynumber: 1.9 Consensus size: 91
100147315 TCTCAATTCC
* * * * **
100147325 TGTTTTTCAAAAAAATCAACTCTTATTGCGAGAGGTGAGTTGAGCCTCAGGTCTCACGCTGAGGT
1 TGTTTGTCAAAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCAAGGT
100147390 ATTTTCAATTTCTGCTTTTCACTTTA
66 ATTTTCAATTTCTGCTTTTCACTTTA
*
100147416 TGTTTGTC-AAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCCAAGG
1 TGTTTGTCAAAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCAAGG
*
100147479 TATTTTTAATTTCTG
65 TATTTTCAATTTCTG
100147494 ATCGTCAAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
89 2 0.03
90 60 0.87
91 7 0.10
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (91 bp):
TGTTTGTCAAAAAAATCAACCCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCAAGGT
ATTTTCAATTTCTGCTTTTCACTTTA
Found at i:100147747 original size:13 final size:13
Alignment explanation
Indices: 100147726--100147758 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
100147716 TGTTGAGCTA
*
100147726 TTTTCAATTTCTG
1 TTTTTAATTTCTG
100147739 TTTTTAATTTCTG
1 TTTTTAATTTCTG
100147752 TTTTTAA
1 TTTTTAA
100147759 AGAGTCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.06, T:0.67
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:100149117 original size:118 final size:118
Alignment explanation
Indices: 100148907--100149143 Score: 447
Period size: 118 Copynumber: 2.0 Consensus size: 118
100148897 CGGCGTAGAG
100148907 ACCTCTGCAGAGAGGAAGAGAGGCAGAAATGTTTTTTTTAAAAGCAGAGGAGAAATGAAATTTTA
1 ACCTCTGCAGAGAGGAAGAGAGGCAGAAATGTTTTTTTTAAAAGCAGAGGAGAAATGAAATTTTA
*
100148972 AAAAAAAAACTCAGCTTTTATAAAAACATAAAACGGCGTCGTTTTGGGTCTGA
66 AAAAAAAAACTCAGCTTTTATAAAAACATAAAAAGGCGTCGTTTTGGGTCTGA
*
100149025 ACCTCTGCAGAGAGGAAGAGAGGCAGAAATGTTTTTTTTAAAAGCAGAGGAGAAATGAAATTTTT
1 ACCTCTGCAGAGAGGAAGAGAGGCAGAAATGTTTTTTTTAAAAGCAGAGGAGAAATGAAATTTTA
*
100149090 AAAAAAAAACTCAGCTTTTATAGAAACATAAAAAGGCGTCGTTTTGGGTCTGA
66 AAAAAAAAACTCAGCTTTTATAAAAACATAAAAAGGCGTCGTTTTGGGTCTGA
100149143 A
1 A
100149144 GTTCAGACGC
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 116 1.00
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (118 bp):
ACCTCTGCAGAGAGGAAGAGAGGCAGAAATGTTTTTTTTAAAAGCAGAGGAGAAATGAAATTTTA
AAAAAAAAACTCAGCTTTTATAAAAACATAAAAAGGCGTCGTTTTGGGTCTGA
Found at i:100149592 original size:3 final size:3
Alignment explanation
Indices: 100149586--100149758 Score: 70
Period size: 3 Copynumber: 56.3 Consensus size: 3
100149576 ATTGTCACAG
* * * *
100149586 TTA TTA TTA TTTA TTTA TTCA TTA TCA TTG TTA TTA TCA TTG TTA TT-
1 TTA TTA TTA -TTA -TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
100149633 TACA TGA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TT- TTA CGTTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA --TTA
** * * * * *
100149679 CCA TTA CTG TTA TTA CTA TCT- TTA TTC TTA TCT- TTA CTT- TTA TCA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T-TA TTA -TTA TTA TTA
** *
100149724 TTA ACA TTA TTA CTA TTTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA T
100149759 ATACATATAT
Statistics
Matches: 125, Mismatches: 31, Indels: 28
0.68 0.17 0.15
Matches are distributed among these distances:
2 9 0.07
3 96 0.77
4 17 0.14
5 3 0.02
ACGTcount: A:0.28, C:0.09, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:100149743 original size:22 final size:21
Alignment explanation
Indices: 100149712--100149757 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
100149702 ATTCTTATCT
100149712 TTACTTTTATCATTAACATTA
1 TTACTTTTATCATTAACATTA
* **
100149733 TTACTATTTATTATTATTATTA
1 TTACT-TTTATCATTAACATTA
100149755 TTA
1 TTA
100149758 TATACATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.59
Consensus pattern (21 bp):
TTACTTTTATCATTAACATTA
Found at i:100149994 original size:12 final size:12
Alignment explanation
Indices: 100149931--100150060 Score: 52
Period size: 12 Copynumber: 10.4 Consensus size: 12
100149921 ATATATCATG
*
100149931 TATATTTTTTTA
1 TATATTTTTATA
* *
100149943 AATATTATTAGTTA
1 TATATTTTTA--TA
100149957 TATATTTTT-TA
1 TATATTTTTATA
*
100149968 TACTATTTCATATA
1 TA-TATTT-TTATA
100149982 TATATTTTTATA
1 TATATTTTTATA
**
100149994 T-TATCCTTAT-
1 TATATTTTTATA
*
100150004 TATTATTATTATTA
1 TA-TATTTTTA-TA
100150018 GTATATGTTTTAT-
1 -TATAT-TTTTATA
* *
100150031 TATATATGTATA
1 TATATTTTTATA
* *
100150043 TATCTTTAATATA
1 TATATTT-TTATA
100150056 TATAT
1 TATAT
100150061 ATAGGTATAT
Statistics
Matches: 87, Mismatches: 18, Indels: 25
0.67 0.14 0.19
Matches are distributed among these distances:
10 1 0.01
11 15 0.17
12 33 0.38
13 15 0.17
14 17 0.20
15 6 0.07
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.60
Consensus pattern (12 bp):
TATATTTTTATA
Found at i:100150167 original size:24 final size:23
Alignment explanation
Indices: 100150140--100150204 Score: 60
Period size: 25 Copynumber: 2.7 Consensus size: 23
100150130 TTATGTAAAT
100150140 ATTTTAATATTATATTATATATGC
1 ATTTTAATATTATATTATATAT-C
*
100150164 ATTTTTTATATTACGTA-TATATATC
1 A-TTTTAATATTA--TATTATATATC
* *
100150189 TTTTTAATATTGTATT
1 ATTTTAATATTATATT
100150205 TTTATATATG
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
22 2 0.06
23 1 0.03
24 10 0.30
25 11 0.33
26 7 0.21
27 2 0.06
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (23 bp):
ATTTTAATATTATATTATATATC
Found at i:100150345 original size:23 final size:21
Alignment explanation
Indices: 100150310--100150372 Score: 74
Period size: 22 Copynumber: 3.0 Consensus size: 21
100150300 TATTTTCAAC
100150310 ACTATATTATGTACATACTTTT
1 ACTATATTATGTACATA-TTTT
**
100150332 ACTATCATTATGTATTTATTTT
1 ACTAT-ATTATGTACATATTTT
*
100150354 AATATA-TATGTACATATTT
1 ACTATATTATGTACATATTT
100150373 ATGTAGTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 11 0.31
21 1 0.03
22 13 0.37
23 10 0.29
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.52
Consensus pattern (21 bp):
ACTATATTATGTACATATTTT
Found at i:100150371 original size:20 final size:21
Alignment explanation
Indices: 100150312--100150372 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
100150302 TTTTCAACAC
*
100150312 TATATTATGTACATACTTTTAC
1 TATATTATGTACATA-TTTTAA
**
100150334 TATCATTATGTATTTATTTTAA
1 TAT-ATTATGTACATATTTTAA
100150356 TATA-TATGTACATATTT
1 TATATTATGTACATATTT
100150373 ATGTAGTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 11 0.33
21 1 0.03
22 11 0.33
23 10 0.30
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.54
Consensus pattern (21 bp):
TATATTATGTACATATTTTAA
Found at i:100151523 original size:36 final size:36
Alignment explanation
Indices: 100151476--100151567 Score: 157
Period size: 36 Copynumber: 2.6 Consensus size: 36
100151466 TAACATATGT
*
100151476 TAAGCAACAATATACAAGTAGCCATGTATACCAACA
1 TAAGCAACAATATACAAGCAGCCATGTATACCAACA
*
100151512 TAAGCAACAATATACCAGCAGCCATGTATACCAACA
1 TAAGCAACAATATACAAGCAGCCATGTATACCAACA
*
100151548 TAAGCAACAATATACCAGCA
1 TAAGCAACAATATACAAGCA
100151568 ACAATATTAC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.47, C:0.25, G:0.11, T:0.17
Consensus pattern (36 bp):
TAAGCAACAATATACAAGCAGCCATGTATACCAACA
Found at i:100151527 original size:20 final size:20
Alignment explanation
Indices: 100151502--100151564 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
100151492 AGTAGCCATG
100151502 TATACCAACATAAGCAACAA
1 TATACCAACATAAGCAACAA
* *
100151522 TATACCAGC---AGC--CATG
1 TATACCAACATAAGCAACA-A
100151538 TATACCAACATAAGCAACAA
1 TATACCAACATAAGCAACAA
100151558 TATACCA
1 TATACCA
100151565 GCAACAATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
15 2 0.06
16 8 0.24
17 3 0.09
19 3 0.09
20 15 0.45
21 2 0.06
ACGTcount: A:0.48, C:0.27, G:0.08, T:0.17
Consensus pattern (20 bp):
TATACCAACATAAGCAACAA
Found at i:100151587 original size:36 final size:36
Alignment explanation
Indices: 100151476--100151588 Score: 102
Period size: 36 Copynumber: 3.1 Consensus size: 36
100151466 TAACATATGT
* * * * * * *
100151476 TAAGCAACAATATACAAGTAGCCATGTATACCAACA
1 TAAGCAACAATATACCAGCAACAATATATACAAAAA
* * * * *
100151512 TAAGCAACAATATACCAGCAGCCATGTATACCAACA
1 TAAGCAACAATATACCAGCAACAATATATACAAAAA
100151548 TAAGCAACAATATACCAGCAACAATAT-TACAAAAAA
1 TAAGCAACAATATACCAGCAACAATATATAC-AAAAA
100151584 TAAGC
1 TAAGC
100151589 TGATTTTCAA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
35 3 0.04
36 66 0.96
ACGTcount: A:0.50, C:0.23, G:0.10, T:0.18
Consensus pattern (36 bp):
TAAGCAACAATATACCAGCAACAATATATACAAAAA
Found at i:100153634 original size:29 final size:29
Alignment explanation
Indices: 100153600--100153663 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
100153590 AAATAATTTG
*
100153600 ATCTTTATCCAGCCAAATTCAAATCTTCA
1 ATCTTTATCCACCCAAATTCAAATCTTCA
*
100153629 ATCTTTATCCACCCAACTTCAAATCTTCA
1 ATCTTTATCCACCCAAATTCAAATCTTCA
100153658 ATCTTT
1 ATCTTT
100153664 CAATCTACCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.31, C:0.30, G:0.02, T:0.38
Consensus pattern (29 bp):
ATCTTTATCCACCCAAATTCAAATCTTCA
Found at i:100156473 original size:15 final size:17
Alignment explanation
Indices: 100156437--100156479 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
100156427 TTAGTTGGGC
100156437 TGTGTGGGCAACACGAG
1 TGTGTGGGCAACACGAG
* *
100156454 TGTGTGGGCCACACGGG
1 TGTGTGGGCAACACGAG
*
100156471 TGTATGGGC
1 TGTGTGGGC
100156480 CATTTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.16, C:0.19, G:0.44, T:0.21
Consensus pattern (17 bp):
TGTGTGGGCAACACGAG
Found at i:100157186 original size:23 final size:24
Alignment explanation
Indices: 100157156--100157200 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
100157146 TGGCTAGGAA
100157156 GTTTTCTAAAAAAT-CTGCATTAT
1 GTTTTCTAAAAAATACTGCATTAT
*
100157179 GTTTTCTAAAAAGTACTGCATT
1 GTTTTCTAAAAAATACTGCATT
100157201 GGCATAATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.42
Consensus pattern (24 bp):
GTTTTCTAAAAAATACTGCATTAT
Found at i:100159907 original size:36 final size:36
Alignment explanation
Indices: 100159867--100159939 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
100159857 TGTTTTTAAG
100159867 CTATGTGAGATATGGGTTTTTATATAAACTCATACC
1 CTATGTGAGATATGGGTTTTTATATAAACTCATACC
100159903 CTATGTGAGATATGGGTTTTTATATAAACTCATACC
1 CTATGTGAGATATGGGTTTTTATATAAACTCATACC
100159939 C
1 C
100159940 CTTTGCCTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.38
Consensus pattern (36 bp):
CTATGTGAGATATGGGTTTTTATATAAACTCATACC
Found at i:100161877 original size:18 final size:19
Alignment explanation
Indices: 100161842--100161882 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
100161832 AATTTTTTTA
100161842 TAAAATTTTAAAATAATAT
1 TAAAATTTTAAAATAATAT
100161861 TAAAA-TTTATAAA-AATAT
1 TAAAATTTTA-AAATAATAT
100161879 TAAA
1 TAAA
100161883 TAAAATTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TAAAATTTTAAAATAATAT
Found at i:100161883 original size:28 final size:29
Alignment explanation
Indices: 100161838--100161913 Score: 75
Period size: 28 Copynumber: 2.6 Consensus size: 29
100161828 CTTAAATTTT
* *
100161838 TTTAT-AAAATTTTAAAATAATATT-AAAA
1 TTTATAAAAATATT-AAATAAAATTCAAAA
100161866 TTTATAAAAATATTAAATAAAATTCAAAA
1 TTTATAAAAATATTAAATAAAATTCAAAA
*
100161895 TGTTCAAAAAAATAATTAA
1 T-TT-ATAAAAAT-ATTAA
100161914 TAGAAATCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 14 0.35
29 12 0.30
30 2 0.05
31 7 0.17
32 5 0.12
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (29 bp):
TTTATAAAAATATTAAATAAAATTCAAAA
Found at i:100175028 original size:13 final size:13
Alignment explanation
Indices: 100174989--100175047 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
100174979 ACAAAATAAA
* *
100174989 ACAAATAATAAGT
1 ACAAAAAATAATT
100175002 ACTAAAAAATTAATT
1 AC-AAAAAA-TAATT
100175017 ACAAAAAATAATT
1 ACAAAAAATAATT
* *
100175030 --AATAAATAACT
1 ACAAAAAATAATT
100175041 ACAAAAA
1 ACAAAAA
100175048 TAAATTTACC
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
11 9 0.24
13 11 0.30
14 11 0.30
15 6 0.16
ACGTcount: A:0.66, C:0.08, G:0.02, T:0.24
Consensus pattern (13 bp):
ACAAAAAATAATT
Found at i:100175143 original size:21 final size:22
Alignment explanation
Indices: 100175102--100175143 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
100175092 CCTTAAACAC
* *
100175102 ACAATCAAACAATTAATAAATA
1 ACAATCAAACAATAAAAAAATA
100175124 ACAAT-AAACAATAAAAAAAT
1 ACAATCAAACAATAAAAAAAT
100175144 TACTAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (22 bp):
ACAATCAAACAATAAAAAAATA
Found at i:100181100 original size:17 final size:18
Alignment explanation
Indices: 100181067--100181100 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
100181057 AATAAATCTA
100181067 ACTAAAACTCTTAATTAT
1 ACTAAAACTCTTAATTAT
*
100181085 ACTAGAACTC-TAATTA
1 ACTAAAACTCTTAATTA
100181101 ACCAAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.35
Consensus pattern (18 bp):
ACTAAAACTCTTAATTAT
Found at i:100185813 original size:20 final size:20
Alignment explanation
Indices: 100185779--100185835 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
100185769 TTAATCATTT
*
100185779 TATTATTAATATTTTTATAG
1 TATTATTAATATTTTTATAA
100185799 TATTAATTAAT-TTTTTATAA
1 TATT-ATTAATATTTTTATAA
100185819 TATT-TT-ATATTTTTATA
1 TATTATTAATATTTTTATA
100185836 TTTCATGGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
17 2 0.06
18 10 0.29
20 16 0.47
21 6 0.18
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TATTATTAATATTTTTATAA
Found at i:100188340 original size:13 final size:14
Alignment explanation
Indices: 100188320--100188350 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
100188310 ATAAATTTTT
*
100188320 ATTTTTTAAAATTA
1 ATTTTTAAAAATTA
100188334 ATTTTTAAAAATTA
1 ATTTTTAAAAATTA
100188348 ATT
1 ATT
100188351 AATTAGATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTTTAAAAATTA
Found at i:100196087 original size:16 final size:16
Alignment explanation
Indices: 100196068--100196120 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
100196058 AGCCTTTGGT
*
100196068 TATATTTATTTTAAAA
1 TATATTTATATTAAAA
100196084 TATATTTATATTAAAA
1 TATATTTATATTAAAA
*
100196100 T-TAGTTTACATTAAAA
1 TATA-TTTATATTAAAA
100196116 -ATATT
1 TATATT
100196121 CAAAAATATG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
15 4 0.12
16 29 0.88
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (16 bp):
TATATTTATATTAAAA
Found at i:100199746 original size:30 final size:33
Alignment explanation
Indices: 100199692--100199758 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 33
100199682 TAATAATAAT
100199692 AAAATTATACTTTAATCCTTTTTAAAAATGATA
1 AAAATTATACTTTAATCCTTTTTAAAAATGATA
* *
100199725 AAAATTA-A-TTTAAT-TTTTTTAAAAATTATA
1 AAAATTATACTTTAATCCTTTTTAAAAATGATA
100199755 AAAA
1 AAAA
100199759 AGAGTAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 18 0.56
31 6 0.19
32 1 0.03
33 7 0.22
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (33 bp):
AAAATTATACTTTAATCCTTTTTAAAAATGATA
Found at i:100205993 original size:26 final size:30
Alignment explanation
Indices: 100205931--100205995 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 30
100205921 GCCCATTTTG
100205931 TTTATTTTTCATTTTTTTTATTACAAATTAAT
1 TTTATTTTTCA-TTTTTTTATTA-AAATTAAT
*
100205963 CTTATTTTTCA-TTTTTTA-T-AAA-TAAT
1 TTTATTTTTCATTTTTTTATTAAAATTAAT
100205989 TTTATTT
1 TTTATTT
100205996 CTATTATTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
26 10 0.32
27 3 0.10
29 1 0.03
30 7 0.23
32 10 0.32
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (30 bp):
TTTATTTTTCATTTTTTTATTAAAATTAAT
Found at i:100208980 original size:6 final size:6
Alignment explanation
Indices: 100208948--100208977 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
100208938 AATCCCAAAA
*
100208948 GGGTGG GGGTGG GGGTGG GGGTGG TGGTGG
1 GGGTGG GGGTGG GGGTGG GGGTGG GGGTGG
100208978 TGGGAATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.80, T:0.20
Consensus pattern (6 bp):
GGGTGG
Found at i:100209128 original size:12 final size:12
Alignment explanation
Indices: 100209113--100209194 Score: 103
Period size: 12 Copynumber: 6.8 Consensus size: 12
100209103 TAGATGGAAG
*
100209113 TGATGATGATTT
1 TGATGATGAGTT
100209125 TGATGATGAGTT
1 TGATGATGAGTT
* *
100209137 CGATGATGAATT
1 TGATGATGAGTT
100209149 TGATGATGAGTT
1 TGATGATGAGTT
*
100209161 TGATGATGA-TGA
1 TGATGATGAGT-T
*
100209173 AGATGATGAGTT
1 TGATGATGAGTT
100209185 TGATGATGAG
1 TGATGATGAG
100209195 GAATTTGGTC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
11 1 0.02
12 57 0.97
13 1 0.02
ACGTcount: A:0.29, C:0.01, G:0.32, T:0.38
Consensus pattern (12 bp):
TGATGATGAGTT
Found at i:100209141 original size:24 final size:24
Alignment explanation
Indices: 100209113--100209193 Score: 117
Period size: 24 Copynumber: 3.4 Consensus size: 24
100209103 TAGATGGAAG
100209113 TGATGATGATTTTGATGATGAGTT
1 TGATGATGATTTTGATGATGAGTT
* *
100209137 CGATGATGAATTTGATGATGAGTT
1 TGATGATGATTTTGATGATGAGTT
***
100209161 TGATGATGATGAAGATGATGAGTT
1 TGATGATGATTTTGATGATGAGTT
100209185 TGATGATGA
1 TGATGATGA
100209194 GGAATTTGGT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.30, C:0.01, G:0.31, T:0.38
Consensus pattern (24 bp):
TGATGATGATTTTGATGATGAGTT
Found at i:100209875 original size:30 final size:30
Alignment explanation
Indices: 100209810--100209895 Score: 102
Period size: 30 Copynumber: 2.8 Consensus size: 30
100209800 CGGTAAGAAT
* *
100209810 ATGGGGCAGATGGGCCAAATGGGTGGTCAG
1 ATGGGTCACATGGGCCAAATGGGTGGTCAG
100209840 ATGGGTCACATGGGTCC-AATGGGTGGTCAG
1 ATGGGTCACATGGG-CCAAATGGGTGGTCAG
*
100209870 ATGGGTTATAACATGGGCCAAATGGG
1 ATGGG---TCACATGGGCCAAATGGG
100209896 AAACCATCCG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
30 30 0.62
31 2 0.04
32 2 0.04
33 14 0.29
ACGTcount: A:0.24, C:0.14, G:0.41, T:0.21
Consensus pattern (30 bp):
ATGGGTCACATGGGCCAAATGGGTGGTCAG
Found at i:100212839 original size:15 final size:15
Alignment explanation
Indices: 100212819--100212884 Score: 64
Period size: 15 Copynumber: 4.5 Consensus size: 15
100212809 TTTTGGTAAT
*
100212819 TTGAAAAATTAAATA
1 TTGAAAAATCAAATA
*
100212834 TTGAAAAATCAATTA
1 TTGAAAAATCAAATA
*
100212849 -TGAAAAATCAAGTA
1 TTGAAAAATCAAATA
* * *
100212863 ATGAAAGATTAAATA
1 TTGAAAAATCAAATA
100212878 TT-AAAAA
1 TTGAAAAA
100212885 AAAATCAATA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
14 17 0.40
15 25 0.60
ACGTcount: A:0.59, C:0.03, G:0.09, T:0.29
Consensus pattern (15 bp):
TTGAAAAATCAAATA
Found at i:100220674 original size:49 final size:50
Alignment explanation
Indices: 100220550--100220725 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
100220540 CCATGGCAAT
*
100220550 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATTAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
100220600 AAGTGATAAGT-AGTAGCTTCGGCTACACTTATCTGATCAAGGA-AAGTGA
1 AAGTGATAAGTGA-TAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
100220649 AAGTGATAAGTGATAGCTTCTGCTACACCTATCTGATCAGGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
100220699 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
100220726 CTGATTAGCT
Statistics
Matches: 113, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
49 44 0.39
50 46 0.41
51 23 0.20
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:100220740 original size:18 final size:18
Alignment explanation
Indices: 100220713--100220748 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
100220703 TGAAAAGTGG
*
100220713 TAGCTTCGGCTACCTGAT
1 TAGCTCCGGCTACCTGAT
100220731 TAGCTCCGGCTACCTGAT
1 TAGCTCCGGCTACCTGAT
100220749 CAGTGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.31, G:0.22, T:0.31
Consensus pattern (18 bp):
TAGCTCCGGCTACCTGAT
Found at i:100220898 original size:31 final size:31
Alignment explanation
Indices: 100220731--100220890 Score: 284
Period size: 31 Copynumber: 5.2 Consensus size: 31
100220721 GCTACCTGAT
100220731 TAGCTCCGGCTACCTGATCAGTGAAAAATGG
1 TAGCTCCGGCTACCTGATCAGTGAAAAATGG
100220762 TAGCTCCGGCTACCTGATCAGTGAAAAATGG
1 TAGCTCCGGCTACCTGATCAGTGAAAAATGG
* *
100220793 TAGCTCCGGCTACCTAATCAGTGAAAATTGG
1 TAGCTCCGGCTACCTGATCAGTGAAAAATGG
100220824 TAGCTCCGGCTACCTGATCAGTGAAAAATGG
1 TAGCTCCGGCTACCTGATCAGTGAAAAATGG
* *
100220855 TAGCTCCGGCTACCTGATCAGTGAATAGTGG
1 TAGCTCCGGCTACCTGATCAGTGAAAAATGG
100220886 TAGCT
1 TAGCT
100220891 TCAGCTACAA
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 123 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.24
Consensus pattern (31 bp):
TAGCTCCGGCTACCTGATCAGTGAAAAATGG
Found at i:100220941 original size:61 final size:63
Alignment explanation
Indices: 100220866--100220992 Score: 188
Period size: 65 Copynumber: 2.0 Consensus size: 63
100220856 AGCTCCGGCT
100220866 ACCTGATCAGTGAATAGTGGTA-GCT-T-CAGCTACAAGTGACAAGTGATTTCCGTATAAGACC
1 ACCTGATCAGTGAATA-TGGTACGCTGTACAGCTACAAGTGACAAGTGATTTCCGTATAAGACC
* *
100220927 ACCTGATCAGTGAATATGGTATCGGTGTGATAGCTACAAGTGACAAGTGATTTCCGTATAAGACC
1 ACCTGATCAGTGAATATGGTA-CGCTGT-ACAGCTACAAGTGACAAGTGATTTCCGTATAAGACC
100220992 A
1 A
100220993 TATCTGAGAT
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
60 5 0.08
61 16 0.27
62 2 0.03
63 1 0.02
65 35 0.59
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (63 bp):
ACCTGATCAGTGAATATGGTACGCTGTACAGCTACAAGTGACAAGTGATTTCCGTATAAGACC
Found at i:100220973 original size:65 final size:61
Alignment explanation
Indices: 100220893--100221019 Score: 193
Period size: 65 Copynumber: 2.0 Consensus size: 61
100220883 TGGTAGCTTC
*
100220893 AGCTACAAGTGACAAGTGATTTCCGTATAAGACCACCTGATCAGTGA-ATATGGTATCGGTGTGA
1 AGCTACAAGTGACAAGTGATTTCCGTATAAGACCA--T-ATC--TGAGATATGGCATCGGTGTGA
100220957 T
61 T
100220958 AGCTACAAGTGACAAGTGATTTCCGTATAAGACCATATCTGAGATATGGCATCGGTGTGAT
1 AGCTACAAGTGACAAGTGATTTCCGTATAAGACCATATCTGAGATATGGCATCGGTGTGAT
100221019 A
1 A
100221020 TATGATTCGT
Statistics
Matches: 60, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
60 3 0.05
61 18 0.30
62 3 0.05
63 1 0.02
65 35 0.58
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (61 bp):
AGCTACAAGTGACAAGTGATTTCCGTATAAGACCATATCTGAGATATGGCATCGGTGTGAT
Found at i:100221076 original size:39 final size:41
Alignment explanation
Indices: 100221017--100221099 Score: 125
Period size: 41 Copynumber: 2.0 Consensus size: 41
100221007 CATCGGTGTG
100221017 ATATATGATTCGTGTATAAGACCATA-TGGGATATGGCATCA
1 ATATATGATTCGTG-ATAAGACCATACTGGGATATGGCATCA
*
100221058 ATATATGATTCGTG-TAAGACCATAGCTGGGCTATGGCATCA
1 ATATATGATTCGTGATAAGACCATA-CTGGGATATGGCATCA
100221099 A
1 A
100221100 GACCATAGCT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
39 10 0.26
41 29 0.74
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (41 bp):
ATATATGATTCGTGATAAGACCATACTGGGATATGGCATCA
Found at i:100221101 original size:25 final size:25
Alignment explanation
Indices: 100221073--100221123 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
100221063 TGATTCGTGT
*
100221073 AAGACCATAGCTGGGCTATGGCATC
1 AAGACCATAGCTGGGCTATGACATC
100221098 AAGACCATAGCTGGGCTATGACATC
1 AAGACCATAGCTGGGCTATGACATC
100221123 A
1 A
100221124 TTATGTGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.25, T:0.20
Consensus pattern (25 bp):
AAGACCATAGCTGGGCTATGACATC
Found at i:100222246 original size:42 final size:42
Alignment explanation
Indices: 100222122--100222281 Score: 151
Period size: 42 Copynumber: 3.7 Consensus size: 42
100222112 ACGTCAATGT
* * ** *
100222122 CATATCCCAGATATGGTCTTACATGGGATCACATATATCGATGC
1 CATATCCCAGACATGGTCTTACAAGAAATCA-A-ATATTGATGC
* * * ***
100222166 CGATAGCCCA-ACTATGGTCTTACATGATATCTCGTATTGATGC
1 C-ATATCCCAGAC-ATGGTCTTACAAGAAATCAAATATTGATGC
* *
100222209 CATGTCCCAGACATGGTCTTACACGAAATCAAATATTGATGC
1 CATATCCCAGACATGGTCTTACAAGAAATCAAATATTGATGC
*
100222251 CATATCCCAGATATGGTCTTACAAGAAATCA
1 CATATCCCAGACATGGTCTTACAAGAAATCA
100222282 CACATAACCC
Statistics
Matches: 95, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
42 59 0.62
43 11 0.12
44 2 0.02
45 23 0.24
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (42 bp):
CATATCCCAGACATGGTCTTACAAGAAATCAAATATTGATGC
Found at i:100244554 original size:12 final size:11
Alignment explanation
Indices: 100244537--100244572 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
100244527 ACAATTTAAG
100244537 AATAATAATATT
1 AATAATAATA-T
100244549 AATAATAATAT
1 AATAATAATAT
*
100244560 AATAATAAAAT
1 AATAATAATAT
100244571 AA
1 AA
100244573 ATAAATAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AATAATAATAT
Found at i:100244636 original size:17 final size:17
Alignment explanation
Indices: 100244607--100244641 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
100244597 TATATAAAAG
100244607 GATATAAATAGATAAAT
1 GATATAAATAGATAAAT
100244624 GATA-AAATAAGATAAAT
1 GATATAAAT-AGATAAAT
100244641 G
1 G
100244642 TATGTATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.60, C:0.00, G:0.14, T:0.26
Consensus pattern (17 bp):
GATATAAATAGATAAAT
Found at i:100246750 original size:48 final size:48
Alignment explanation
Indices: 100246682--100246908 Score: 229
Period size: 48 Copynumber: 4.7 Consensus size: 48
100246672 GGTAAGATGT
* * *
100246682 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAATAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATAATGC
* * * * * * *
100246730 CAATGCCATGTACCAAACATGGTCTTACACTGGCTCACATATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATAATGC
* * *
100246778 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTAACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATAATGC
* ** * * * * * * * *
100246826 CAATGTTATGTTCCAAATATGGTTTTACACTGGCTCACATATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATAATGC
*
100246874 CGATGCCATGTCTCAGACATGGTCTTACACTAGCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT
100246909 GTTGTAACAG
Statistics
Matches: 136, Mismatches: 43, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
48 136 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATAATGC
Found at i:100246848 original size:96 final size:96
Alignment explanation
Indices: 100246682--100246963 Score: 422
Period size: 96 Copynumber: 2.9 Consensus size: 96
100246672 GGTAAGATGT
* * * ** *
100246682 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAATAATGTCAATGCCATGTACCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTAACAATGCCAATGTTATGTTCCAAA
100246747 CATGGTCTTACACTGGCTCACATATTGAGGC
66 CATGGTCTTACACTGGCTCACATATTGAGGC
100246778 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTAACAATGCCAATGTTATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTAACAATGCCAATGTTATGTTCCAAA
* *
100246843 TATGGTTTTACACTGGCTCACATATTGAGGC
66 CATGGTCTTACACTGGCTCACATATTGAGGC
* * * * * *
100246874 CGATGCCATGTCTCAGACATGGTCTTACACTAGCTGT-TGTAACAGTCCCGATGTTACGTTCCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCT-TAACAATGCCAATGTTATGTTCCAA
100246938 ACATGGTCTTACACTGGCTCACATAT
65 ACATGGTCTTACACTGGCTCACATAT
100246964 ACCCCAGCGT
Statistics
Matches: 169, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
95 1 0.01
96 168 0.99
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTTAACAATGCCAATGTTATGTTCCAAA
CATGGTCTTACACTGGCTCACATATTGAGGC
Found at i:100255741 original size:136 final size:136
Alignment explanation
Indices: 100255497--100255774 Score: 502
Period size: 136 Copynumber: 2.0 Consensus size: 136
100255487 CACTTGGGTT
* *
100255497 CTCTATTTTCTTCGACACCTATATTATGCTCATTGGAAACTGTTAAATCGATTGCTGCTCTAGTT
1 CTCTATTTTCTTCGACACCTACATTATGCTCATTGGAAACTGTTAAATCGATTACTGCTCTAGTT
* *
100255562 GATGAGCAAAGTTTCCTTGAGACAAGGATTTGTCTTGCTTCAGGTGTTTGTGCATTTCTTTGGCT
66 GATGAGCAAAGTTTCCCTGAGACAAGGATTGGTCTTGCTTCAGGTGTTTGTGCATTTCTTTGGCT
100255627 CTACAC
131 CTACAC
* *
100255633 CTCTATTTTCTTCGACACCTACATTATGCTCATTGGAAACTGTTAAATCTATTACTTCTCTAGTT
1 CTCTATTTTCTTCGACACCTACATTATGCTCATTGGAAACTGTTAAATCGATTACTGCTCTAGTT
100255698 GATGAGCAAAGTTTCCCTGAGACAAGGATTGGTCTTGCTTCAGGTGTTTGTGCATTTCTTTGGCT
66 GATGAGCAAAGTTTCCCTGAGACAAGGATTGGTCTTGCTTCAGGTGTTTGTGCATTTCTTTGGCT
100255763 CTACAC
131 CTACAC
100255769 CTCTAT
1 CTCTAT
100255775 CCTAGGGTAT
Statistics
Matches: 136, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 136 1.00
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.40
Consensus pattern (136 bp):
CTCTATTTTCTTCGACACCTACATTATGCTCATTGGAAACTGTTAAATCGATTACTGCTCTAGTT
GATGAGCAAAGTTTCCCTGAGACAAGGATTGGTCTTGCTTCAGGTGTTTGTGCATTTCTTTGGCT
CTACAC
Found at i:100255816 original size:19 final size:19
Alignment explanation
Indices: 100255792--100255829 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
100255782 TATGTATGTT
*
100255792 GTTTGATGTTTCGATGTAA
1 GTTTGATGTTTCAATGTAA
100255811 GTTTGATGTTTCAATGTAA
1 GTTTGATGTTTCAATGTAA
100255830 CTCTTTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.47
Consensus pattern (19 bp):
GTTTGATGTTTCAATGTAA
Found at i:100263001 original size:18 final size:18
Alignment explanation
Indices: 100262978--100263015 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
100262968 AATATATATT
100262978 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
100262996 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
100263014 AA
1 AA
100263016 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:100263008 original size:13 final size:13
Alignment explanation
Indices: 100262992--100263016 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100262982 CAAGTACCCA
100262992 ACCCAACCCAATT
1 ACCCAACCCAATT
100263005 ACCCAACCCAAT
1 ACCCAACCCAAT
100263017 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:100263054 original size:5 final size:6
Alignment explanation
Indices: 100263041--100263087 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
100263031 ATAATTTAAT
*
100263041 AAATAA AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
100263088 AATATAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:100263073 original size:20 final size:20
Alignment explanation
Indices: 100263044--100263082 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
100263034 ATTTAATAAA
100263044 TAAAAATAAAAATAAAAATC
1 TAAAAATAAAAATAAAAATC
*
100263064 TAAAACTAAAAATAAAAAT
1 TAAAAATAAAAATAAAAAT
100263083 AAAAAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAATC
Found at i:100263120 original size:9 final size:9
Alignment explanation
Indices: 100263106--100263182 Score: 84
Period size: 9 Copynumber: 8.6 Consensus size: 9
100263096 TTTATACAAA
*
100263106 TAATTCTGT
1 TAATTCGGT
*
100263115 TAATTCGAT
1 TAATTCGGT
* *
100263124 TAATTTGGG
1 TAATTCGGT
100263133 TAATTC-GT
1 TAATTCGGT
100263141 GTAATTCGGT
1 -TAATTCGGT
**
100263151 TAATTCAAT
1 TAATTCGGT
100263160 TAATTCGGT
1 TAATTCGGT
100263169 TAATTCGGT
1 TAATTCGGT
100263178 TAATT
1 TAATT
100263183 TTATACTTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
8 1 0.02
9 52 0.95
10 2 0.04
ACGTcount: A:0.27, C:0.09, G:0.17, T:0.47
Consensus pattern (9 bp):
TAATTCGGT
Found at i:100263136 original size:18 final size:18
Alignment explanation
Indices: 100263106--100263182 Score: 93
Period size: 18 Copynumber: 4.3 Consensus size: 18
100263096 TTTATACAAA
*
100263106 TAATTCTGTTAATTCGAT
1 TAATTCGGTTAATTCGAT
* *
100263124 TAATTTGGGTAATTCG-T
1 TAATTCGGTTAATTCGAT
*
100263141 GTAATTCGGTTAATTCAAT
1 -TAATTCGGTTAATTCGAT
*
100263160 TAATTCGGTTAATTCGGT
1 TAATTCGGTTAATTCGAT
100263178 TAATT
1 TAATT
100263183 TTATACTTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
17 1 0.02
18 47 0.96
19 1 0.02
ACGTcount: A:0.27, C:0.09, G:0.17, T:0.47
Consensus pattern (18 bp):
TAATTCGGTTAATTCGAT
Found at i:100265705 original size:16 final size:16
Alignment explanation
Indices: 100265684--100265716 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
100265674 TAATAATTTC
100265684 TTATTTGATAGAATAT
1 TTATTTGATAGAATAT
100265700 TTATTTGATAGAATAT
1 TTATTTGATAGAATAT
100265716 T
1 T
100265717 AGGGAAAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (16 bp):
TTATTTGATAGAATAT
Found at i:100265848 original size:16 final size:17
Alignment explanation
Indices: 100265823--100265855 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
100265813 AATATAAATC
100265823 TTTATAATTATATTATA
1 TTTATAATTATATTATA
100265840 TTTAT-ATTATATTATA
1 TTTATAATTATATTATA
100265856 AATAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTATAATTATATTATA
Found at i:100284026 original size:18 final size:17
Alignment explanation
Indices: 100283998--100284032 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
100283988 ATTTTTAAGA
*
100283998 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
100284015 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
100284033 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:100284286 original size:16 final size:16
Alignment explanation
Indices: 100284265--100284303 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
100284255 TTGATTTGCT
*
100284265 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
*
100284281 ATTACACATCTATTCC
1 ATTACACAGCTATTCC
100284297 ATTACAC
1 ATTACAC
100284304 CTCTAATCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:100284308 original size:16 final size:16
Alignment explanation
Indices: 100284278--100284334 Score: 78
Period size: 16 Copynumber: 3.6 Consensus size: 16
100284268 ACACAGCTTT
* * *
100284278 TCCATTACACATCTAT
1 TCCAATACACCTCTAA
*
100284294 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
100284310 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
100284326 TCCAATACA
1 TCCAATACA
100284335 GCGAACTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:100284880 original size:95 final size:93
Alignment explanation
Indices: 100284772--100284958 Score: 223
Period size: 95 Copynumber: 2.0 Consensus size: 93
100284762 ATCTTTAATT
* * ***
100284772 TAAAAAAAAAATTAAGTCCCTA-TTTTTATTTGTACTAAATTAAGTATTTGAACTTTTAAAATGC
1 TAAAAAAAAAATTAAGT-CCTACTTTTT-TTTATACTAAATTAAGTACTTGAACTACCAAAATGC
***
100284836 ATAAAAAAATGGTCTTAAACTTTTTCAAAAA
64 ATAAAAAAA-ACCCTTAAACTTTTTCAAAAA
** * *
100284867 TAAAAAAGCAATTAAGTCCTACCTTTTTTTTATACTCAATTAGGTACTTGAACTACCAAAATGCA
1 TAAAAAAAAAATTAAGTCCTA-CTTTTTTTTATACTAAATTAAGTACTTGAACTACCAAAATGCA
100284932 TAAAAAAAACCCTTAAACTTTTTCAAA
65 TAAAAAAAACCCTTAAACTTTTTCAAA
100284959 CAAAATAAAC
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
94 20 0.26
95 53 0.68
96 5 0.06
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (93 bp):
TAAAAAAAAAATTAAGTCCTACTTTTTTTTATACTAAATTAAGTACTTGAACTACCAAAATGCAT
AAAAAAAACCCTTAAACTTTTTCAAAAA
Found at i:100285128 original size:19 final size:17
Alignment explanation
Indices: 100285091--100285149 Score: 82
Period size: 19 Copynumber: 3.3 Consensus size: 17
100285081 ATGTGGCAAA
100285091 AAAAATTATAAAAAAAT
1 AAAAATTATAAAAAAAT
100285108 AAAAATTATAAAAATAGAT
1 AAAAATTATAAAAA-A-AT
*
100285127 AAAAATTGTAAAAAATAT
1 AAAAATTATAAAAAA-AT
100285145 AAAAA
1 AAAAA
100285150 AAGTGTAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
17 14 0.37
18 9 0.24
19 15 0.39
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
AAAAATTATAAAAAAAT
Found at i:100285198 original size:10 final size:10
Alignment explanation
Indices: 100285091--100285201 Score: 67
Period size: 9 Copynumber: 11.8 Consensus size: 10
100285081 ATGTGGCAAA
100285091 AAAAAT-TAT
1 AAAAATATAT
100285100 AAAAA-A-AT
1 AAAAATATAT
100285108 AAAAAT-TAT
1 AAAAATATAT
*
100285117 AAAAATAGAT
1 AAAAATATAT
*
100285127 AAAAAT-TGT
1 AAAAATATAT
100285136 AAAAA-ATAT
1 AAAAATATAT
* *
100285145 AAAAAAAGTGT
1 AAAAATA-TAT
** *
100285156 AAATTTTTAT
1 AAAAATATAT
* *
100285166 AAAAAAACAT
1 AAAAATATAT
100285176 -AAAATATA-
1 AAAAATATAT
*
100285184 GAAAATATAT
1 AAAAATATAT
100285194 AAAAATAT
1 AAAAATAT
100285202 GGAAAAACAA
Statistics
Matches: 75, Mismatches: 18, Indels: 17
0.68 0.16 0.15
Matches are distributed among these distances:
8 7 0.09
9 40 0.53
10 23 0.31
11 5 0.07
ACGTcount: A:0.68, C:0.01, G:0.05, T:0.27
Consensus pattern (10 bp):
AAAAATATAT
Found at i:100289295 original size:24 final size:26
Alignment explanation
Indices: 100289271--100289320 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
100289261 AATAGTTAAA
*
100289271 TAATTTTT-AAAATTTATATAAAAAT
1 TAATTTTTAAAAAATTATATAAAAAT
*
100289296 TATTTTTTAAAAAATTATATAAAAA
1 TAATTTTTAAAAAATTATATAAAAA
100289321 CTTGATTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
TAATTTTTAAAAAATTATATAAAAAT
Found at i:100290236 original size:11 final size:11
Alignment explanation
Indices: 100290214--100290262 Score: 62
Period size: 11 Copynumber: 4.5 Consensus size: 11
100290204 TGTTTTGATG
*
100290214 TTATTTTGCTA
1 TTATTTTACTA
100290225 TTATTTTACTA
1 TTATTTTACTA
*
100290236 TTATATTACTA
1 TTATTTTACTA
* *
100290247 TTATTCTATTA
1 TTATTTTACTA
100290258 TTATT
1 TTATT
100290263 GTTTGGGAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (11 bp):
TTATTTTACTA
Found at i:100293661 original size:16 final size:16
Alignment explanation
Indices: 100293640--100293694 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
100293630 GTTTGGTTCA
*
100293640 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
100293656 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
*
100293672 TTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
100293688 CTGTAAT
1 CTGTAAT
100293695 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:100293760 original size:44 final size:46
Alignment explanation
Indices: 100293680--100293768 Score: 139
Period size: 44 Copynumber: 2.0 Consensus size: 46
100293670 AGTTGTAATG
100293680 GAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATT
1 GAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATT
*
100293726 GAATAGAGCTGTAAT-AG-AATTC-TTGTGTTTGGTTGAATGGAAT
1 GAATAGAGCTGTAATCAGTAATTCAAT-TGTTTGGTTGAATGGAAT
100293769 AGATGTTGTA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
43 1 0.02
44 23 0.56
45 2 0.05
46 15 0.37
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (46 bp):
GAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATT
Found at i:100293769 original size:39 final size:40
Alignment explanation
Indices: 100293671--100293784 Score: 115
Period size: 44 Copynumber: 2.7 Consensus size: 40
100293661 ATTGAATAGA
100293671 GTTGTAATGGAATAGAGCTGTAATCAGTAATTCAATTGTTTG
1 GTTG-AATGGAATAGAGCTGTAAT-AGTAATTCAATTGTTTG
*
100293713 GTTGAATGGAATTGAATAGAGCTGTAATAG-AATTC-TTGTGTTTG
1 GTTGAAT-G----GAATAGAGCTGTAATAGTAATTCAAT-TGTTTG
*
100293757 GTTGAATGGAATAGATGTTGTAATAGTA
1 GTTGAATGGAATAGA-GCTGTAATAGTA
100293785 TAAGGAAAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 17
0.77 0.02 0.21
Matches are distributed among these distances:
39 7 0.11
40 9 0.15
41 4 0.06
42 5 0.08
43 2 0.03
44 18 0.29
45 2 0.03
46 15 0.24
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (40 bp):
GTTGAATGGAATAGAGCTGTAATAGTAATTCAATTGTTTG
Found at i:100293869 original size:25 final size:26
Alignment explanation
Indices: 100293841--100293891 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
100293831 GTAGATAGAT
*
100293841 GATTATTGTT-ATTAAATTTTAATAA
1 GATTATTGTTCAATAAATTTTAATAA
*
100293866 GATTATTGTTCAATATATTTTAATAA
1 GATTATTGTTCAATAAATTTTAATAA
100293892 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (26 bp):
GATTATTGTTCAATAAATTTTAATAA
Found at i:100293970 original size:12 final size:11
Alignment explanation
Indices: 100293943--100294017 Score: 52
Period size: 12 Copynumber: 6.8 Consensus size: 11
100293933 TATTAAATAC
100293943 AATTTAATAA-
1 AATTTAATAAT
100293953 AA--TAATATAT
1 AATTTAATA-AT
*
100293963 AATTTAATAAC
1 AATTTAATAAT
*
100293974 ATTATTAAT-AT
1 AAT-TTAATAAT
100293985 AATTATTAATAAT
1 AA-T-TTAATAAT
100293998 -ATTTAATAAT
1 AATTTAATAAT
100294008 AATTTTAATA
1 AA-TTTAATA
100294018 TAAAATTATT
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
8 5 0.10
9 1 0.02
10 12 0.23
11 7 0.13
12 25 0.48
13 2 0.04
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (11 bp):
AATTTAATAAT
Found at i:100294009 original size:13 final size:12
Alignment explanation
Indices: 100293955--100294017 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
100293945 TTTAATAAAA
100293955 TAATATATAA-TT
1 TAATA-ATAATTT
*
100293967 TAATAA-CATTAT
1 TAATAATAATT-T
100293979 TAAT-ATAATTAT
1 TAATAATAATT-T
100293991 TAATAAT-A-TT
1 TAATAATAATTT
100294001 TAATAATAATTT
1 TAATAATAATTT
100294013 TAATA
1 TAATA
100294018 TAAAATTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
10 9 0.21
11 5 0.12
12 27 0.63
13 2 0.05
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (12 bp):
TAATAATAATTT
Found at i:100296745 original size:39 final size:39
Alignment explanation
Indices: 100296702--100296776 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
100296692 CATCAAGTAA
100296702 AGAGAGATCAAATTATAGCATACTAGACTCAGTTTTTAC
1 AGAGAGATCAAATTATAGCATACTAGACTCAGTTTTTAC
100296741 AGAGAGATCAAATTATAGCATACTAGACTCAGTTTT
1 AGAGAGATCAAATTATAGCATACTAGACTCAGTTTT
100296777 GCATCAAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.31
Consensus pattern (39 bp):
AGAGAGATCAAATTATAGCATACTAGACTCAGTTTTTAC
Found at i:100308543 original size:4 final size:4
Alignment explanation
Indices: 100308534--100308564 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
100308524 GAGAAAACAT
100308534 GAAA GAAA G-AA GAAA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
100308565 TAAAAAAGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:100308572 original size:19 final size:19
Alignment explanation
Indices: 100308534--100308572 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
100308524 GAGAAAACAT
*
100308534 GAAAGAAAGAAGAAAGAAA
1 GAAAGAAAGAAGAAAAAAA
100308553 GAAAGAAAGAA-ATAAAAAA
1 GAAAGAAAGAAGA-AAAAAA
100308572 G
1 G
100308573 GGAAATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (19 bp):
GAAAGAAAGAAGAAAAAAA
Found at i:100319655 original size:81 final size:80
Alignment explanation
Indices: 100319519--100319673 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 80
100319509 CCATCACTTT
* * *
100319519 TTTGCAAACCTTTTCTGCTCTTCAATGGTGACACCAATCTGCTAGCCAAATGGGAAGGTGAAAAT
1 TTTGCAAACCTTTTCTGCTCTTCAATGGTGAAACCAATCTACTAGCCAAATGGGAAGGCGAAAAT
100319584 GATCTACCGTCACCTC
66 GATCT-CCGTCACCTC
** *
100319600 TTTGCAAAGTTTTTCTGCTCTTCAATGGTGAAACCAATCTATTAGCC-AATCGGGAAGGCGAAAA
1 TTTGCAAACCTTTTCTGCTCTTCAATGGTGAAACCAATCTACTAGCCAAAT-GGGAAGGCGAAAA
100319664 TGATCTCCGT
65 TGATCTCCGT
100319674 AGCTTCGAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 7 0.10
81 60 0.90
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (80 bp):
TTTGCAAACCTTTTCTGCTCTTCAATGGTGAAACCAATCTACTAGCCAAATGGGAAGGCGAAAAT
GATCTCCGTCACCTC
Found at i:100320383 original size:23 final size:23
Alignment explanation
Indices: 100320357--100320401 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
100320347 CAAAAGAACA
100320357 TTTATCAAGTGAGGAGCATTGTG
1 TTTATCAAGTGAGGAGCATTGTG
100320380 TTTATCAAGTGAGGAGCATTGT
1 TTTATCAAGTGAGGAGCATTGT
100320402 TCCAATACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.29, T:0.36
Consensus pattern (23 bp):
TTTATCAAGTGAGGAGCATTGTG
Found at i:100336838 original size:4 final size:4
Alignment explanation
Indices: 100336829--100336866 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
100336819 ATGATAATTC
*
100336829 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGC ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
100336867 ATCATATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.26, C:0.03, G:0.24, T:0.47
Consensus pattern (4 bp):
ATGT
Found at i:100344496 original size:21 final size:21
Alignment explanation
Indices: 100344463--100344502 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
100344453 GTAAAATAGT
*
100344463 GAAAAAAATAATAAGAAAATA
1 GAAAAAAATAATAAAAAAATA
100344484 GAAATAAAA-AATAAAAAAA
1 GAAA-AAAATAATAAAAAAA
100344503 GCAAAGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.12
Consensus pattern (21 bp):
GAAAAAAATAATAAAAAAATA
Found at i:100375478 original size:24 final size:24
Alignment explanation
Indices: 100375451--100375496 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
100375441 ATTCATGTCA
100375451 CAAAATATACCAATGCATCATCAT
1 CAAAATATACCAATGCATCATCAT
* *
100375475 CAAAATATACTAATTCATCATC
1 CAAAATATACCAATGCATCATC
100375497 CCTATACCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.28
Consensus pattern (24 bp):
CAAAATATACCAATGCATCATCAT
Found at i:100376549 original size:42 final size:42
Alignment explanation
Indices: 100376503--100376582 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
100376493 GTTGTACATG
* *
100376503 AATCTTATATCGATGCCAATGTCCTAGACATGGGCTTACACA
1 AATCTCATATCGATGCCAATGTCCCAGACATGGGCTTACACA
*
100376545 AATCTCATATCGATGCCAATGTCCCAGACATGGTCTTA
1 AATCTCATATCGATGCCAATGTCCCAGACATGGGCTTA
100376583 ATCTCATATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
AATCTCATATCGATGCCAATGTCCCAGACATGGGCTTACACA
Found at i:100381976 original size:41 final size:41
Alignment explanation
Indices: 100381875--100382074 Score: 294
Period size: 41 Copynumber: 4.9 Consensus size: 41
100381865 GTAAAACACA
* * * *
100381875 GAGCAATAGTGGCGTTTTTGGTAAAACGCCGCTAAAAAT-A
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
100381915 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
* *
100381956 GAGTAATAGCGGCTCTTTTGGTAAAACGCCGCTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
* * *
100381997 GAGCAATAGCGGCGCTTCTGATAAAACGCCACTAAAAGTCG
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
**
100382038 GAGCAATAGCGGCGCTTTTAATAAAACGCCGCTAAAA
1 GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
100382075 ATCATATAAC
Statistics
Matches: 145, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
40 36 0.25
41 109 0.75
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (41 bp):
GAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCG
Found at i:100382168 original size:16 final size:17
Alignment explanation
Indices: 100382144--100382177 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
100382134 CTAAAGTACT
*
100382144 AAACTCCTAAACCCTAA
1 AAACTCCTAAACACTAA
100382161 AAAC-CCTAAACACTAA
1 AAACTCCTAAACACTAA
100382177 A
1 A
100382178 CTATAACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (17 bp):
AAACTCCTAAACACTAA
Found at i:100382969 original size:7 final size:7
Alignment explanation
Indices: 100382959--100383046 Score: 54
Period size: 7 Copynumber: 12.3 Consensus size: 7
100382949 CATTAAACCG
100382959 AAATAAA
1 AAATAAA
100382966 AAAT--A
1 AAATAAA
*
100382971 AACTCAAA
1 AAAT-AAA
100382979 AAATAAA
1 AAATAAA
*
100382986 AATTAAA
1 AAATAAA
*
100382993 AAATTTAA
1 AAA-TAAA
*
100383001 AAATTAA
1 AAATAAA
* *
100383008 AATTTAA
1 AAATAAA
100383015 AAATAAA
1 AAATAAA
*
100383022 AAATTTAA
1 AAA-TAAA
*
100383030 AATTAAA
1 AAATAAA
100383037 AAATTAAA
1 AAA-TAAA
100383045 AA
1 AA
100383047 CTTAAAAATT
Statistics
Matches: 63, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
5 4 0.06
7 38 0.60
8 21 0.33
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (7 bp):
AAATAAA
Found at i:100382993 original size:14 final size:14
Alignment explanation
Indices: 100382962--100383065 Score: 86
Period size: 14 Copynumber: 7.2 Consensus size: 14
100382952 TAAACCGAAA
*
100382962 TAAAAAAT-AAACT
1 TAAAAAATAAAAAT
*
100382975 CAAAAAATAAAAAT
1 TAAAAAATAAAAAT
100382989 TAAAAAATTTAAAAAT
1 TAAAAAA--TAAAAAT
**
100383005 TAAAATTTAAAAA-
1 TAAAAAATAAAAAT
*
100383018 TAAAAAATTTAAAAT
1 TAAAAAA-TAAAAAT
100383033 TAAAAAATTAAAAACT
1 TAAAAAA-TAAAAA-T
* *
100383049 TAAAAATTTAAAAT
1 TAAAAAATAAAAAT
100383063 TAA
1 TAA
100383066 TCAATAGTGG
Statistics
Matches: 74, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
13 12 0.16
14 25 0.34
15 18 0.24
16 19 0.26
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (14 bp):
TAAAAAATAAAAAT
Found at i:100382994 original size:8 final size:8
Alignment explanation
Indices: 100382983--100383061 Score: 85
Period size: 8 Copynumber: 10.4 Consensus size: 8
100382973 CTCAAAAAAT
100382983 AAAAATTA
1 AAAAATTA
*
100382991 AAAAATTT
1 AAAAATTA
100382999 AAAAATT-
1 AAAAATTA
*
100383006 -AAAATTT
1 AAAAATTA
100383013 AAAAA-TA
1 AAAAATTA
100383020 AAAAATT-
1 AAAAATTA
*
100383027 TAAAATTA
1 AAAAATTA
100383035 AAAAATTA
1 AAAAATTA
*
100383043 AAAACTTA
1 AAAAATTA
*
100383051 AAAATTTA
1 AAAAATTA
100383059 AAA
1 AAA
100383062 TTAATCAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
6 6 0.10
7 12 0.20
8 43 0.70
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (8 bp):
AAAAATTA
Found at i:100383009 original size:22 final size:22
Alignment explanation
Indices: 100382984--100383053 Score: 97
Period size: 22 Copynumber: 3.2 Consensus size: 22
100382974 TCAAAAAATA
100382984 AAAATTAAAAAATTTAAAAA-TT
1 AAAATTAAAAAA-TTAAAAACTT
* * *
100383006 AAAATTTAAAAATAAAAAATTT
1 AAAATTAAAAAATTAAAAACTT
100383028 AAAATTAAAAAATTAAAAACTT
1 AAAATTAAAAAATTAAAAACTT
100383050 AAAA
1 AAAA
100383054 ATTTAAAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
21 6 0.14
22 36 0.86
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (22 bp):
AAAATTAAAAAATTAAAAACTT
Found at i:100383053 original size:7 final size:7
Alignment explanation
Indices: 100382976--100383065 Score: 99
Period size: 7 Copynumber: 12.3 Consensus size: 7
100382966 AAATAAACTC
*
100382976 AAAAAAT
1 AAAAATT
100382983 AAAAATT
1 AAAAATT
100382990 AAAAAATTT
1 -AAAAA-TT
100382999 AAAAATT
1 AAAAATT
*
100383006 AAAATTT
1 AAAAATT
*
100383013 AAAAATA
1 AAAAATT
100383020 AAAAATT
1 AAAAATT
*
100383027 TAAAATT
1 AAAAATT
100383034 AAAAAATT
1 -AAAAATT
100383042 AAAAACTT
1 AAAAA-TT
100383050 AAAAATT
1 AAAAATT
*
100383057 TAAAATT
1 AAAAATT
100383064 AA
1 AA
100383066 TCAATAGTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
7 45 0.64
8 23 0.33
9 2 0.03
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAAATT
Found at i:100383061 original size:22 final size:20
Alignment explanation
Indices: 100382977--100383065 Score: 88
Period size: 22 Copynumber: 4.1 Consensus size: 20
100382967 AATAAACTCA
*
100382977 AAAAATAAAAATTAAAAAATTT
1 AAAAATTAAAATT-AAAAA-TT
*
100382999 AAAAATTAAAATTTAAAAATA
1 AAAAATTAAAA-TTAAAAATT
100383020 AAAAATTTAAAATTAAAAAATT
1 AAAAA-TTAAAATT-AAAAATT
*
100383042 AAAAACTTAAAAATTTAAAATT
1 AAAAA-TT-AAAATTAAAAATT
100383064 AA
1 AA
100383066 TCAATAGTGG
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
21 8 0.14
22 42 0.72
23 8 0.14
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAAATTAAAATTAAAAATT
Found at i:100386807 original size:18 final size:20
Alignment explanation
Indices: 100386778--100386826 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
100386768 TTTTATTATT
100386778 TATTTTAGTTTTGATTCTAA
1 TATTTTAGTTTTGATTCTAA
* *
100386798 -ATTTTA-TTTTTATTTTAA
1 TATTTTAGTTTTGATTCTAA
100386816 TATTTTTAGTT
1 TA-TTTTAGTT
100386827 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 10 0.42
19 7 0.29
20 5 0.21
21 2 0.08
ACGTcount: A:0.24, C:0.02, G:0.06, T:0.67
Consensus pattern (20 bp):
TATTTTAGTTTTGATTCTAA
Found at i:100387051 original size:43 final size:43
Alignment explanation
Indices: 100386985--100387075 Score: 128
Period size: 43 Copynumber: 2.1 Consensus size: 43
100386975 TTTCATTACC
* * * *
100386985 TTTAGTGGCATTTTTGAGTAAAGCGTCGCTAAAGGTCATGACA
1 TTTAGTAGCATTTGTGAGAAAAGCGCCGCTAAAGGTCATGACA
* *
100387028 TTTAGTAGCATTTGTGGGAAAAGCGCCGCTAAAGGTCATGACC
1 TTTAGTAGCATTTGTGAGAAAAGCGCCGCTAAAGGTCATGACA
100387071 TTTAG
1 TTTAG
100387076 CGGCGTTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
TTTAGTAGCATTTGTGAGAAAAGCGCCGCTAAAGGTCATGACA
Found at i:100393709 original size:12 final size:12
Alignment explanation
Indices: 100393692--100393716 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
100393682 TTGTGTGTTC
100393692 TTTATTTTATTT
1 TTTATTTTATTT
100393704 TTTATTTTATTT
1 TTTATTTTATTT
100393716 T
1 T
100393717 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:100401141 original size:43 final size:42
Alignment explanation
Indices: 100400974--100401141 Score: 135
Period size: 43 Copynumber: 4.0 Consensus size: 42
100400964 CATAAAGCTC
* * * *
100400974 ATACAATGCC-ATATCCCAGATATGGTCTTACATGTTAT-TA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTA
* * * * * * *
100401014 TATATCGATGCCACTGTTCCGGACAGGGTCTTACACGAAATCGA
1 -ATA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTA
* * *
100401058 TTA-ATGATGCCAATGTCCCAGACATGGTATTACACATAATCTCA
1 ATACA--ATGCCAATGTCCCAGACATGGTCTTACACGTAATCT-A
*
100401102 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
100401142 ACATCTCGAT
Statistics
Matches: 95, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
41 3 0.03
42 6 0.06
43 81 0.85
44 4 0.04
45 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (42 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTA
Found at i:100403625 original size:16 final size:16
Alignment explanation
Indices: 100403603--100403636 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
100403593 TATTATTATA
*
100403603 TGTTTTTATTTTTATTT
1 TGTTTTT-TTTCTATTT
100403620 TGTTTTTTTTCTATTT
1 TGTTTTTTTTCTATTT
100403636 T
1 T
100403637 TTTCACGTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.09, C:0.03, G:0.06, T:0.82
Consensus pattern (16 bp):
TGTTTTTTTTCTATTT
Found at i:100407078 original size:50 final size:50
Alignment explanation
Indices: 100407003--100407178 Score: 255
Period size: 50 Copynumber: 3.5 Consensus size: 50
100406993 TATGGCAACC
* * *
100407003 AGTGATAAGTGATAGCTTTGTCTACACTTATCTGATCAAGGATAAGTGAA
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
100407053 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
* * *
100407103 AGTGATAAGTGATGGCTTCGACTACACTTATCTAATCAAGGACGAA-TGACA
1 AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAC-AAGTGA-A
* *
100407154 AGTGAAAAGTGGTAGCTTCGGCTAC
1 AGTGATAAGTGATAGCTTCGGCTAC
100407179 CTGATCAGTG
Statistics
Matches: 114, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
50 90 0.79
51 24 0.21
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (50 bp):
AGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAA
Found at i:100407192 original size:31 final size:31
Alignment explanation
Indices: 100407154--100407271 Score: 173
Period size: 31 Copynumber: 3.8 Consensus size: 31
100407144 ACGAATGACA
100407154 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
100407185 AGTGAAAAGTGGTAGCTTCGGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
100407216 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
100407247 GGTGAATAGTGGTAACTTTGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
100407272 AAGTGACAAG
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 77 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:100407504 original size:49 final size:47
Alignment explanation
Indices: 100407346--100407594 Score: 263
Period size: 42 Copynumber: 5.5 Consensus size: 47
100407336 TGTATAAAAT
* * * *
100407346 CATATCTGGGATATGGCATC-A-GTGAGATATGTGATTAGTGTAAGAC
1 CATAGCTGGGCTATGGCATCGATATGTGATATGTGA-TAGTGTAAGAC
* *
100407392 CATAGCTGGGCTATGGCATCGATATGTGATATGTTATCCGTGTAAGAC
1 CATAGCTGGGCTATGGCATCGATATGTGATATGTGAT-AGTGTAAGAC
*
100407440 CATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGTGTAAGAC
1 CATAGCTGGGCTATGGCATCGATATGTGATATGTGA-TA-GTGTAAGAC
100407489 CATAGCTGGGCTATGGCATCGATATGTGA-A--T-AT-GTGTAAGAC
1 CATAGCTGGGCTATGGCATCGATATGTGATATGTGATAGTGTAAGAC
*
100407531 CATAGCTGGGCTATGGCGTC-ATTATGTGA-A---GAT-GTGTAAGAC
1 CATAGCTGGGCTATGGCATCGA-TATGTGATATGTGATAGTGTAAGAC
* **
100407573 CATAGTTGAACTATGGCATCGA
1 CATAGCTGGGCTATGGCATCGA
100407595 GAAAATGAAG
Statistics
Matches: 180, Mismatches: 15, Indels: 19
0.84 0.07 0.09
Matches are distributed among these distances:
41 1 0.01
42 63 0.35
43 1 0.01
44 1 0.01
45 1 0.01
46 19 0.11
47 2 0.01
48 54 0.30
49 38 0.21
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (47 bp):
CATAGCTGGGCTATGGCATCGATATGTGATATGTGATAGTGTAAGAC
Found at i:100409819 original size:3 final size:3
Alignment explanation
Indices: 100409813--100409842 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
100409803 ATCATCATAA
*
100409813 TCT TCT TCT TCT TTT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
100409843 ACCCAGCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:100414271 original size:60 final size:58
Alignment explanation
Indices: 100414179--100414310 Score: 176
Period size: 60 Copynumber: 2.2 Consensus size: 58
100414169 TCCAATAATA
* ** *
100414179 ATATTATTTTAATATTTTTAGTATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATT
1 ATATTAATTTAATAAATTTAGTATTAAATTTAATCTAATATTTATC-T-T-GATAAGTATT
*
100414240 CTATTAATTTAATAAATTTA-TATTAAATTTAATCTAATATTTATCTTGATAAGTATT
1 ATATTAATTTAATAAATTTAGTATTAAATTTAATCTAATATTTATCTTGATAAGTATT
*
100414297 AAATTAATTTAATA
1 ATATTAATTTAATA
100414311 TTAAAGTGAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
57 22 0.34
58 1 0.02
59 1 0.02
60 24 0.38
61 16 0.25
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (58 bp):
ATATTAATTTAATAAATTTAGTATTAAATTTAATCTAATATTTATCTTGATAAGTATT
Found at i:100414353 original size:9 final size:9
Alignment explanation
Indices: 100414339--100414363 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
100414329 ATTATAGTTG
100414339 AACTCTCTA
1 AACTCTCTA
100414348 AACTCTCTA
1 AACTCTCTA
100414357 AACTCTC
1 AACTCTC
100414364 CCTATATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (9 bp):
AACTCTCTA
Found at i:100419371 original size:46 final size:46
Alignment explanation
Indices: 100419304--100419478 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
100419294 TGTAACCCGC
*
100419304 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
100419350 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * * * **
100419400 -C-TCA-CGAACTCGGATTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
100419443 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
100419479 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.57
47 24 0.23
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:100419422 original size:93 final size:93
Alignment explanation
Indices: 100419312--100419482 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
100419302 GCCCATAAGT
** *
100419312 GAACTCGAACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGGCTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
100419377 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * *
100419405 GAACTCGGATTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
100419470 CGAGTTCGGATGC
66 CGAGCTCGGATGC
100419483 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:100423271 original size:38 final size:38
Alignment explanation
Indices: 100423212--100423317 Score: 105
Period size: 37 Copynumber: 2.8 Consensus size: 38
100423202 TATTTTTAAG
*
100423212 AATAT-AAAGAATATATATAAGTATGTATATG-ATGTA-A
1 AATATGAAA-AATATATATAAGTATGTATAAGAAT-TAGA
* *
100423249 AATATGCATAAATATATGTAAGTA--TATAAGAATTATGA
1 AATATG-AAAAATATATATAAGTATGTATAAGAATTA-GA
*
100423287 AATATGAAAAATATATTTAAGTATGTATAAG
1 AATATGAAAAATATATATAAGTATGTATAAG
100423318 TACGTATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
36 7 0.12
37 22 0.39
38 20 0.35
39 8 0.14
ACGTcount: A:0.51, C:0.01, G:0.13, T:0.35
Consensus pattern (38 bp):
AATATGAAAAATATATATAAGTATGTATAAGAATTAGA
Found at i:100423708 original size:19 final size:17
Alignment explanation
Indices: 100423684--100423800 Score: 59
Period size: 16 Copynumber: 6.9 Consensus size: 17
100423674 TAATATTAGA
100423684 AAAATATATATAATAGTGT
1 AAAATATATATAATA-T-T
100423703 AAAATATAACTAATAATATT
1 AAAATAT-A-T-ATAATATT
*
100423723 AAAATATATACAATGA-T
1 AAAATATATATAAT-ATT
* * *
100423740 AATATATATAAAAGA-T
1 AAAATATATATAATATT
* *
100423756 -ATATGTATAT-ATAATT
1 AAAATATATATAAT-ATT
*
100423772 -ATATA-ATATAATATT
1 AAAATATATATAATATT
100423787 AAAATATA-ATAATA
1 AAAATATATATAATA
100423801 CGACATAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 21
0.73 0.08 0.19
Matches are distributed among these distances:
14 1 0.01
15 16 0.20
16 19 0.24
17 17 0.21
18 2 0.03
19 8 0.10
20 9 0.11
21 2 0.03
22 6 0.08
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (17 bp):
AAAATATATATAATATT
Found at i:100423736 original size:64 final size:64
Alignment explanation
Indices: 100423663--100423794 Score: 164
Period size: 64 Copynumber: 2.1 Consensus size: 64
100423653 TAAACGACAG
*
100423663 TATATACAAT-ATAATAT-TAGAAAA-ATATATATAATAGTGTAA-AATATAACTAATAATATTA
1 TATATACAATGATAATATATAGAAAAGATATATAT-ATA-TATAATAATATAA-T-ATAATATTA
100423724 AAA
62 AAA
* * *
100423727 TATATACAATGATAATATATATAAAAGATATATGTATATATAATTATATAATATAATATTAAAA
1 TATATACAATGATAATATATAGAAAAGATATATATATATATAATAATATAATATAATATTAAAA
100423791 TATA
1 TATA
100423795 ATAATACGAC
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
64 26 0.43
65 12 0.20
66 15 0.25
67 7 0.12
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (64 bp):
TATATACAATGATAATATATAGAAAAGATATATATATATATAATAATATAATATAATATTAAAA
Found at i:100424013 original size:3 final size:3
Alignment explanation
Indices: 100423998--100424039 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
100423988 AAGCATAAAC
* *
100423998 TAA TAA AAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
100424040 CATTGGAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:100424195 original size:6 final size:6
Alignment explanation
Indices: 100424153--100424186 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
100424143 ATAAAAATAT
100424153 ATACTA ATACATA ATACTA ATACTA ATACTA ATA
1 ATACTA ATAC-TA ATACTA ATACTA ATACTA ATA
100424187 ATACTAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (6 bp):
ATACTA
Found at i:100424198 original size:12 final size:12
Alignment explanation
Indices: 100424148--100424189 Score: 57
Period size: 12 Copynumber: 3.3 Consensus size: 12
100424138 ACATAATAAA
100424148 AATATATACTAAT
1 AATA-ATACTAAT
100424161 ACATAATACTAAT
1 A-ATAATACTAAT
*
100424174 ACTAATACTAAT
1 AATAATACTAAT
100424186 AATA
1 AATA
100424190 CTAATAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 13 0.50
13 10 0.38
14 3 0.12
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (12 bp):
AATAATACTAAT
Found at i:100424685 original size:11 final size:11
Alignment explanation
Indices: 100424669--100424704 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
100424659 AGAAAAAAAA
100424669 GAAGAGAGAGG
1 GAAGAGAGAGG
*
100424680 GAAGAGAGAAG
1 GAAGAGAGAGG
100424691 GAAGAGAGAAGG
1 GAAGAGAG-AGG
100424703 GA
1 GA
100424705 GGGGGAAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 18 0.82
12 4 0.18
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAGG
Found at i:100425805 original size:45 final size:44
Alignment explanation
Indices: 100425626--100425992 Score: 305
Period size: 45 Copynumber: 8.3 Consensus size: 44
100425616 CCAATACATG
* * * *
100425626 AGACAAGATCTACTTTCTTCGATCTACTTTACCACCAATATGGGA
1 AGACAAGATCTGCTTTCTGCGATCTAC-TTCCCACCAATATAGGA
* * * * *
100425671 AGACAAGATCTGC-ATC-GTCGATCCACTTCCAATCATTATAGGA
1 AGACAAGATCTGCTTTCTG-CGATCTACTTCCCACCAATATAGGA
* * * ** * * * *
100425714 AGATAGGACCTG-TTATCTTTGATCTACTTCACGCCAATACATGA
1 AGACAAGATCTGCTT-TCTGCGATCTACTTCCCACCAATATAGGA
*
100425758 AGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGA
1 AGACAAGATCTGCTTTCTGCGATCTACTTC-CCACCAATATAGGA
* * * * *
100425803 AGACAAGATCTGC-GTC-GTCGATCCACTTCCAATCATTATAGGA
1 AGACAAGATCTGCTTTCTG-CGATCTACTTCCCACCAATATAGGA
* * * ** * * * *
100425846 AGATAGGACCTG-TTATCTTTGATCTACTTCACGCCAATACATGA
1 AGACAAGATCTGCTT-TCTGCGATCTACTTCCCACCAATATAGGA
*
100425890 AGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGA
1 AGACAAGATCTGCTTTCTGCGATCTACTTC-CCACCAATATAGGA
*
100425935 AGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGA
1 AGACAAGATCTGCTTTCTGCGATCTACTTC-CCACCAATATAGGA
100425980 AGACAAGATCTGC
1 AGACAAGATCTGC
100425993 GTCGTCGATC
Statistics
Matches: 247, Mismatches: 63, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
43 41 0.17
44 101 0.41
45 105 0.43
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (44 bp):
AGACAAGATCTGCTTTCTGCGATCTACTTCCCACCAATATAGGA
Found at i:100425821 original size:132 final size:132
Alignment explanation
Indices: 100425604--100425947 Score: 627
Period size: 132 Copynumber: 2.6 Consensus size: 132
100425594 GTAATCTTCA
* * * **
100425604 ATCTACTTCATGCCAATACATG-AGACAAGATCTACTTTCTTCGATCTACTTTACCACCAATATG
1 ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATG
100425668 GGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATAGGAAGATAGGACCTGTTATCTT
66 GGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATAGGAAGATAGGACCTGTTATCTT
100425733 TG
131 TG
100425735 ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATG
1 ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATG
*
100425800 GGAAGACAAGATCTGCGTCGTCGATCCACTTCCAATCATTATAGGAAGATAGGACCTGTTATCTT
66 GGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATAGGAAGATAGGACCTGTTATCTT
100425865 TG
131 TG
100425867 ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATG
1 ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATG
100425932 GGAAGACAAGATCTGC
66 GGAAGACAAGATCTGC
100425948 TTTCTGCGAT
Statistics
Matches: 206, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
131 21 0.10
132 185 0.90
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (132 bp):
ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATG
GGAAGACAAGATCTGCATCGTCGATCCACTTCCAATCATTATAGGAAGATAGGACCTGTTATCTT
TG
Found at i:100426280 original size:95 final size:95
Alignment explanation
Indices: 100426167--100426355 Score: 317
Period size: 95 Copynumber: 2.0 Consensus size: 95
100426157 GATCTACAAT
*
100426167 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC-CATGT
1 CTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCAC-TGT
100426231 AGTCAGGGAAGTAAAATCTGCCATCTTTGAC
65 AGTCAGGGAAGTAAAATCTGCCATCTTTGAC
* *
100426262 CTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTCCACTGTA
1 CTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTA
* *
100426327 GTCAGGGAGGTAAAATCTTCCATCTTTGA
66 GTCAGGGAAGTAAAATCTGCCATCTTTGA
100426356 TCTGCTTCGC
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
95 87 0.99
96 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (95 bp):
CTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTA
GTCAGGGAAGTAAAATCTGCCATCTTTGAC
Found at i:100426414 original size:134 final size:134
Alignment explanation
Indices: 100426262--100426628 Score: 626
Period size: 134 Copynumber: 2.7 Consensus size: 134
100426252 CATCTTTGAC
* * * *
100426262 CTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACTCCACTGTA
1 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
* *
100426327 GTCAGGGAGGTAAAATCTTCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTG
66 GTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATCTG
*
100426392 TAAT
131 CAAT
*
100426396 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTG
1 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
100426461 GTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATCTG
66 GTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATCTG
100426526 CAAT
131 CAAT
100426530 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
1 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
* *
100426595 GTCACATGGAGGTAAAATCTGCCATCCTTGATCT
66 GT--CAGGGAGGTAAAATCTGCCATCTTTGATCT
100426629 TCAATCTATT
Statistics
Matches: 220, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
134 192 0.87
136 28 0.13
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (134 bp):
CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
GTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATCTG
CAAT
Found at i:100426418 original size:46 final size:46
Alignment explanation
Indices: 100426365--100426558 Score: 125
Period size: 46 Copynumber: 4.3 Consensus size: 46
100426355 ATCTGCTTCG
*
100426365 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
* * ** * *
100426411 CTGCCAAATACAGGGA-G-ATAGAAT-TATC-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGCA-AG-ATCT-GCAATCTTCAATCTATTCCA
*** * * * * ** * *
100426456 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT-ATTCCA
*
100426499 CTGCCAAATACAGGAAAGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
100426545 CTGCCAAATACAGG
1 CTGCCAAATACAGG
100426559 GAGATAGAAT
Statistics
Matches: 104, Mismatches: 32, Indels: 24
0.65 0.20 0.15
Matches are distributed among these distances:
42 9 0.09
43 14 0.13
44 3 0.03
45 23 0.22
46 55 0.53
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
Found at i:100426467 original size:229 final size:229
Alignment explanation
Indices: 100426062--100426489 Score: 723
Period size: 229 Copynumber: 1.9 Consensus size: 229
100426052 CTTGCCCCGG
100426062 GAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTCGA
1 GAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTCGA
*
100426127 TCTGCTTTGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAAATA
66 TCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAAATA
*
100426192 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCCATGTAGTCAGGGAAGTAAAATCTGCCATCT
131 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCCATGTAGTCAGGGAAGTAAAATCTGCCATCT
100426257 TTGACCTTCAATCTATTCCACTGCCAAATGCAGA
196 TTGACCTTCAATCTATTCCACTGCCAAATGCAGA
** * * * * *
100426291 GAGATAGAGTTATCGGCTTTAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTTCCATCTTTGA
1 GAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTCGA
**
100426356 TCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATA
66 TCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAAATA
* *
100426421 CAGGGAGATAGAATTATCGGCTTCAATGTACT-CCACTGTGGTCAGGGAGGTAAAATCTGCCATC
131 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCCA-TGTAGTCAGGGAAGTAAAATCTGCCATC
100426485 TTTGA
195 TTTGA
100426490 TCTGCTTCGC
Statistics
Matches: 185, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
228 3 0.02
229 182 0.98
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (229 bp):
GAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTCGA
TCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAAATA
CAGGGAGATAGAATTATCGGCTTCAATGTACTCCCATGTAGTCAGGGAAGTAAAATCTGCCATCT
TTGACCTTCAATCTATTCCACTGCCAAATGCAGA
Found at i:100426592 original size:45 final size:45
Alignment explanation
Indices: 100426396--100426957 Score: 131
Period size: 46 Copynumber: 12.4 Consensus size: 45
100426386 GATCTGTAAT
*
100426396 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAATTATCGG
* *** * * ** **
100426441 CTTCAATGTACTCCACTG--TGGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAAT-TATCGG
** * * * * *
100426484 CTTTGATCTGCTTCGCTGCCAAATACA-GGA-A-AGCAA-GATCTGCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAG-AATTATC-G---G
*
100426530 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAATTATCGG
* * * * * * *
100426575 CTTCAATGTACTCCACTG--TAGTCACATGGAGGTAAAATCTGCCATCCTTGAT
1 CTTCAATCTACTCCACTGCCAAAT-ACAGGGAGATAGAAT-T---AT-C--G-G
* *
100426627 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAATTATCGG
* * * * * ** **
100426672 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAAT-TATCGG
** * * * * * **
100426715 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AG-ATCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAAT-TATC-GG
* *
100426761 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATTGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAATTATCGG
* *** * * ** **
100426806 CTTCAATGTACTCCACTG--TGGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAAT-TATCGG
** * * * * * **
100426849 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AG-ATCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAAT-TATC-GG
*
100426895 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAATTATCGG
*
100426940 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
100426958 TTGTCAGGGA
Statistics
Matches: 351, Mismatches: 122, Indels: 88
0.63 0.22 0.16
Matches are distributed among these distances:
42 36 0.10
43 48 0.14
44 16 0.05
45 98 0.28
46 100 0.28
47 7 0.02
48 7 0.02
49 8 0.02
51 1 0.00
52 17 0.05
53 11 0.03
54 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAATTATCGG
Found at i:100426674 original size:231 final size:229
Alignment explanation
Indices: 100426394--100426857 Score: 847
Period size: 231 Copynumber: 2.0 Consensus size: 229
100426384 AAGATCTGTA
100426394 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
100426459 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
100426524 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
*
100426589 ACTGTAGTCACATGGAGGTAAAATCTGCCATCCTTG
196 ACTGTAGT--CAGGGAGGTAAAATCTGCCATCCTTG
*
100426625 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
100426690 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
*
100426755 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATTGGCTTCAATGTACTCC
131 TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
* *
100426820 ACTGTGGTCAGGGAGGTAAAATCTGCCATCTTTG
196 ACTGTAGTCAGGGAGGTAAAATCTGCCATCCTTG
100426854 ATCT
1 ATCT
100426858 GCTTCGCTGC
Statistics
Matches: 226, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
229 28 0.12
231 198 0.88
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (229 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATC
TGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCC
ACTGTAGTCAGGGAGGTAAAATCTGCCATCCTTG
Found at i:100426694 original size:97 final size:95
Alignment explanation
Indices: 100426528--100426723 Score: 347
Period size: 97 Copynumber: 2.0 Consensus size: 95
100426518 AAGATCTGCA
100426528 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
100426593 TAGTCACATGGAGGTAAAATCTGCCATCCTTG
66 TAGT--CAGGGAGGTAAAATCTGCCATCCTTG
*
100426625 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
100426690 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCCTTG
100426720 ATCT
1 ATCT
100426724 GCTTCGCTGC
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
95 28 0.29
97 68 0.71
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCCTTG
Found at i:100426780 original size:46 final size:46
Alignment explanation
Indices: 100426730--100426923 Score: 145
Period size: 46 Copynumber: 4.3 Consensus size: 46
100426720 ATCTGCTTCG
100426730 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
* * * *
100426776 CTGCCAAATACAGGGA-G-ATAGAAT-T--ATTGGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGCA-AG-ATCTGCAAT--CTTCAATCTATTCCA
*** * * * * ** * *
100426821 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT-ATTCCA
100426864 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
100426910 CTGCCAAATACAGG
1 CTGCCAAATACAGG
100426924 GAGATAGAAT
Statistics
Matches: 107, Mismatches: 27, Indels: 28
0.66 0.17 0.17
Matches are distributed among these distances:
42 8 0.07
43 16 0.15
44 3 0.03
45 24 0.22
46 56 0.52
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
Found at i:100426780 original size:365 final size:363
Alignment explanation
Indices: 100426060--100426991 Score: 1634
Period size: 365 Copynumber: 2.6 Consensus size: 363
100426050 TTCTTGCCCC
* * ** *
100426060 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCTGCCATCTTC
1 GGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
* *
100426125 GATCTGCTTTGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
* *
100426190 TACAGGGAGATAGAGTTATCGGCTTCAATGTACTCC-CATGTAGTCAGGGAAGTAAAATCTGCCA
131 TACAGGGAGATAGAATTATCGGCTTCAATGTACTCCAC-TGTAGTCAGGGAGGTAAAATCTGCCA
* * * *
100426254 TCTTTGACCTTCAATCTATTCCACTGCCAAATGCAGAGAGATAGAGTTATCGGCTTTAATGTACT
195 TCCTTGATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACT
*
100426319 CCACTGTAGTCAGGGAGGTAAAATCTTCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGC
260 CCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGC
*
100426384 AAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACA
325 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
100426423 GGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
*
100426488 GATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
*
100426553 TACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCC
131 TACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCC
*
100426618 ATCCTTGATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTAC
194 ATCCTTGATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTAC
100426683 TCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGG
259 TCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGG
100426748 CAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
324 CAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
*
100426788 GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
100426853 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
66 GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
*
100426918 TACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTTGTCAGGGAGGTAAAATCTGCCAT
131 TACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCAT
100426983 -CTTCGATCT
196 CCTT-GATCT
100426992 GCTTCGCTGC
Statistics
Matches: 543, Mismatches: 22, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
362 3 0.01
363 188 0.35
364 1 0.00
365 351 0.65
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (363 bp):
GGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
GATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAA
TACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCAT
CCTTGATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTC
CACTGTAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCA
AGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
Found at i:100426787 original size:134 final size:134
Alignment explanation
Indices: 100426625--100427034 Score: 741
Period size: 134 Copynumber: 3.1 Consensus size: 134
100426615 GCCATCCTTG
*
100426625 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
100426690 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
100426755 TGCA
131 TGCA
*
100426759 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
100426824 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
100426889 TGCA
131 TGCA
100426893 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
* * * *
100426958 TTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATC
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
100427023 TG-A
131 TGCA
100427026 TATCTTCAA
1 -ATCTTCAA
100427035 CCAGCTCTGC
Statistics
Matches: 267, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
133 1 0.00
134 266 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
TGCA
Found at i:100427120 original size:86 final size:86
Alignment explanation
Indices: 100426982--100427331 Score: 547
Period size: 86 Copynumber: 4.1 Consensus size: 86
100426972 AAATCTGCCA
* * * * *
100426982 TCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATCTGATATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
100427047 CAAACGAGAGAGGCAAGGTTTG
65 CAAACGAGAGAGGCAAGGTTTG
* *
100427069 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
* *
100427134 AAACAAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
*
100427155 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
100427220 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
* *
100427241 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
* * *
100427306 GACCGAGAGAGGCAAGGTTTA
66 AAACGAGAGAGGCAAGGTTTG
100427327 TCTTC
1 TCTTC
100427332 AATTTTTACT
Statistics
Matches: 245, Mismatches: 18, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
86 225 0.92
87 20 0.08
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
AAACGAGAGAGGCAAGGTTTG
Found at i:100427191 original size:42 final size:42
Alignment explanation
Indices: 100427057--100427277 Score: 114
Period size: 42 Copynumber: 5.2 Consensus size: 42
100427047 CAAACGAGAG
*
100427057 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * * *
100427099 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-ACAAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAGGA
*
100427142 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * * * * * *
100427185 AGGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGA
1 AGGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA
*
100427228 GTGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
100427271 AGGCAAG
1 AGGCAAG
100427278 ATCTGATAAC
Statistics
Matches: 122, Mismatches: 39, Indels: 36
0.62 0.20 0.18
Matches are distributed among these distances:
41 24 0.20
42 32 0.26
43 18 0.15
44 24 0.20
45 24 0.20
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (42 bp):
AGGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
Done.