Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 308 of 352
Found at i:100707212 original size:32 final size:32
Alignment explanation
Indices: 100707171--100707233 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
100707161 ATATAAAATT
*
100707171 GTTTGTTAATTCATATCAGAATGAGCCTGCTG
1 GTTTGTTAATTCATATCAGAATAAGCCTGCTG
*
100707203 GTTTGTTAATTCATATTAGAATAAGCCTGCT
1 GTTTGTTAATTCATATCAGAATAAGCCTGCT
100707234 AGTATGGAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (32 bp):
GTTTGTTAATTCATATCAGAATAAGCCTGCTG
Found at i:100713156 original size:49 final size:49
Alignment explanation
Indices: 100713093--100713280 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
100713083 TGAGGTCACG
* * **
100713093 TGTGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * *
100713142 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT-GGTCGCA
* *
100713193 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* *
100713242 TGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
100713281 GCTTTGGCTA
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 73 0.62
50 4 0.03
51 41 0.35
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:100713262 original size:100 final size:100
Alignment explanation
Indices: 100713088--100713280 Score: 332
Period size: 100 Copynumber: 1.9 Consensus size: 100
100713078 TATTGTGAGG
* **
100713088 TCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
* *
100713153 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTACAGGCTACTATGCGTACCAGATAACTTCGA
*
100713188 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
100713253 AAGTACAGGCTACTATGCGTACCAGATA
66 AAGTACAGGCTACTATGCGTACCAGATA
100713281 GCTTTGGCTA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTACAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:100717869 original size:13 final size:13
Alignment explanation
Indices: 100717853--100717914 Score: 52
Period size: 13 Copynumber: 4.5 Consensus size: 13
100717843 CATAACATTT
100717853 ATATAAAAAAGTA
1 ATATAAAAAAGTA
* *
100717866 ATATAAAAATGAA
1 ATATAAAAAAGTA
* * *
100717879 ACATAATAAAGATT
1 ATATAAAAAAG-TA
100717893 ATATAATAAAATGTA
1 ATATAA-AAAA-GTA
100717908 ATATAAA
1 ATATAAA
100717915 CATATAAGAA
Statistics
Matches: 36, Mismatches: 10, Indels: 5
0.71 0.20 0.10
Matches are distributed among these distances:
13 19 0.53
14 6 0.17
15 10 0.28
16 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (13 bp):
ATATAAAAAAGTA
Found at i:100718082 original size:16 final size:16
Alignment explanation
Indices: 100718061--100718099 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
100718051 AATAAGTACT
100718061 AATAATA-TATAATTAA
1 AATAATACTATAA-TAA
100718077 AATAATACTTATAATAA
1 AATAATAC-TATAATAA
100718094 AATAAT
1 AATAAT
100718100 TTTATAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 9 0.43
18 5 0.24
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAATACTATAATAA
Found at i:100718106 original size:16 final size:17
Alignment explanation
Indices: 100718022--100718108 Score: 58
Period size: 16 Copynumber: 5.1 Consensus size: 17
100718012 TAAAGAGATG
100718022 TAAAATAATA-TT-TAA
1 TAAAATAATACTTATAA
*
100718037 GAAAAATAATAC--ATAA
1 -TAAAATAATACTTATAA
* *
100718053 TAAGTACTAATAATATATAA
1 TAA--AATAATACT-TATAA
100718073 TTAAAATAATACTTATAA
1 -TAAAATAATACTTATAA
*
100718091 TAAAATAAT-TTTATAA
1 TAAAATAATACTTATAA
100718107 TA
1 TA
100718109 TATAATATAA
Statistics
Matches: 56, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
15 2 0.04
16 20 0.36
17 15 0.27
18 5 0.09
19 7 0.12
20 4 0.07
21 3 0.05
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (17 bp):
TAAAATAATACTTATAA
Found at i:100719954 original size:163 final size:164
Alignment explanation
Indices: 100719635--100720113 Score: 825
Period size: 163 Copynumber: 2.9 Consensus size: 164
100719625 CGATTTAAAT
*
100719635 CATCTTGAGTCTGTTTGAGATCATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
* *
100719700 AGCACAAGGATGCTTAAACTATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGT
66 AGCAC-A-GATGC-CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGT
* *
100719765 CCTTGATTTGTTCCTTGTAGGCACAAGGATGCCAAAC
128 CCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAAC
100719802 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
100719867 AGCAC-GATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCT
66 AGCACAGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCT
100719931 CGATTTGTTCCTTGTAAGCACAAGGATGCCAAAC
131 CGATTTGTTCCTTGTAAGCACAAGGATGCCAAAC
* * *
100719965 CACCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
*
100720030 AGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACGTTTGAGAGTCATATCTGCAATGTC
66 AGCAC-A-GATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTC
100720095 CTCGATTTGTTCCTTGTAA
129 CTCGATTTGTTCCTTGTAA
100720114 ATACAAGAAC
Statistics
Matches: 300, Mismatches: 9, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
163 151 0.50
164 5 0.02
166 75 0.25
167 69 0.23
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (164 bp):
CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
AGCACAGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCT
CGATTTGTTCCTTGTAAGCACAAGGATGCCAAAC
Found at i:100720077 original size:246 final size:247
Alignment explanation
Indices: 100719635--100720113 Score: 852
Period size: 246 Copynumber: 1.9 Consensus size: 247
100719625 CGATTTAAAT
*
100719635 CATCTTGAGTCTGTTTGAGATCATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
* * *
100719700 AGCACAAGGATGCTTAAACTATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGT
66 AGCACAAGGATGCTCAAACCACCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGT
* *
100719765 CCTTGATTTGTTCCTTGTAGGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGA
131 CCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGA
100719830 GAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTAAGCACGATGCCAAAC
196 GAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTAAGCACGATGCCAAAC
* *
100719882 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
100719947 AGCACAAGGATGC-CAAACCACCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGT
66 AGCACAAGGATGCTCAAACCACCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGT
*
100720011 CCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACGTTTGA
131 CCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGA
* *
100720076 GAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAA
196 GAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTAA
100720114 ATACAAGAAC
Statistics
Matches: 221, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
246 146 0.66
247 75 0.34
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (247 bp):
CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
AGCACAAGGATGCTCAAACCACCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGT
CCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGA
GAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTAAGCACGATGCCAAAC
Found at i:100720136 original size:83 final size:83
Alignment explanation
Indices: 100719635--100720113 Score: 829
Period size: 83 Copynumber: 5.8 Consensus size: 83
100719625 CGATTTAAAT
* * *
100719635 CATCTTGAGTCTGTTTGAGATCATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
*
100719700 AGCACAAGGATGCTTAAAC
66 AGCACAAGGATGC-CAAAC
* *
100719719 TATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGATTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
*
100719784 GGCACAAGGATGCCAAAC
66 AGCACAAGGATGCCAAAC
* *
100719802 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
100719867 AGCAC---GATGCCAAAC
66 AGCACAAGGATGCCAAAC
100719882 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
100719947 AGCACAAGGATGCCAAAC
66 AGCACAAGGATGCCAAAC
*
100719965 CACCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
100720030 AGCACAAGGATGCCAAAC
66 AGCACAAGGATGCCAAAC
*
100720048 CATCTTGAGTCTGTTTGAGAACGTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
100720113 A
66 A
100720114 ATACAAGAAC
Statistics
Matches: 375, Mismatches: 17, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
80 78 0.21
83 225 0.60
84 72 0.19
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (83 bp):
CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
AGCACAAGGATGCCAAAC
Found at i:100720272 original size:119 final size:119
Alignment explanation
Indices: 100720061--100720645 Score: 916
Period size: 119 Copynumber: 5.0 Consensus size: 119
100720051 CTTGAGTCTG
* * * * *
100720061 TTTGAGAACGTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAATACAAGAACAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* *
100720126 CAAATCATCTTAGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * * *
100720180 TTTGAGAACGTTTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTATAAACACAAGAACAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* *
100720245 CAAATCATCTTGGATCTGCTTCAGTATAAACGTCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
100720299 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
100720364 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
100720418 TTTGAGAACGTCTGAGAGTCAAATCTGCTATATCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
100720483 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
100720537 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGA-------CTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* ** **
100720595 CCAATCATCTTGGATCTGCTTCAACATAAATGTCTGAA-GTCTAGATCTGCT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGT-TAGATCTGCT
100720646 GTCTTCAATT
Statistics
Matches: 440, Mismatches: 25, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
111 2 0.00
112 62 0.14
119 376 0.85
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:100732640 original size:13 final size:13
Alignment explanation
Indices: 100732624--100732685 Score: 52
Period size: 13 Copynumber: 4.5 Consensus size: 13
100732614 CATAACATTT
100732624 ATATAAAAAAGTA
1 ATATAAAAAAGTA
* *
100732637 ATATAAAAATGAA
1 ATATAAAAAAGTA
* * *
100732650 ACATAATAAAGATT
1 ATATAAAAAAG-TA
100732664 ATATAATAAAATGTA
1 ATATAA-AAAA-GTA
100732679 ATATAAA
1 ATATAAA
100732686 CATATAAGAA
Statistics
Matches: 36, Mismatches: 10, Indels: 5
0.71 0.20 0.10
Matches are distributed among these distances:
13 19 0.53
14 6 0.17
15 10 0.28
16 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (13 bp):
ATATAAAAAAGTA
Found at i:100732881 original size:16 final size:17
Alignment explanation
Indices: 100732850--100732883 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
100732840 TATATAATTA
100732850 AAAATAATACTTATAAT
1 AAAATAATACTTATAAT
*
100732867 AAAATAAT-TTTATAAT
1 AAAATAATACTTATAAT
100732883 A
1 A
100732884 TATAATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAATAATACTTATAAT
Found at i:100732940 original size:19 final size:19
Alignment explanation
Indices: 100732918--100732955 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
100732908 TAAACCAAAT
100732918 AATAA-AAAATAATATATAG
1 AATAATAAAATAA-ATATAG
*
100732937 AATAATATAATAAATATAG
1 AATAATAAAATAAATATAG
100732956 GACTAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
AATAATAAAATAAATATAG
Found at i:100741624 original size:7 final size:7
Alignment explanation
Indices: 100741612--100741643 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
100741602 ACCTTTTCAA
100741612 TCATCCC
1 TCATCCC
100741619 TCATCCC
1 TCATCCC
100741626 TCATCCC
1 TCATCCC
100741633 TCATCCC
1 TCATCCC
100741640 TCAT
1 TCAT
100741644 TCATCCCCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.16, C:0.53, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCCC
Found at i:100748492 original size:22 final size:21
Alignment explanation
Indices: 100748462--100748508 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
100748452 TACAAATTAA
100748462 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
100748484 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
100748505 ATCT
1 ATCT
100748509 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:100748502 original size:16 final size:16
Alignment explanation
Indices: 100748481--100748531 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
100748471 ATTACAAGAT
100748481 CATATCTTCAAGATTG
1 CATATCTTCAAGATTG
100748497 CATATCATATCTAAGATTG
1 CATATC-T-TC-AAGATTG
*
100748516 CATATCCTTAAAGATT
1 CATAT-CTTCAAGATT
100748532 ATATTTCCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 3 0.10
19 13 0.43
20 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (16 bp):
CATATCTTCAAGATTG
Found at i:100748514 original size:19 final size:21
Alignment explanation
Indices: 100748479--100748521 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
100748469 AGATTACAAG
100748479 ATCATATCTTCAAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
100748500 ATCATATC-T-AAGATTGCAT
1 ATCATATCTTCAAGATTGCAT
100748519 ATC
1 ATC
100748522 CTTAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
20 1 0.05
21 8 0.36
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (21 bp):
ATCATATCTTCAAGATTGCAT
Found at i:100749093 original size:87 final size:87
Alignment explanation
Indices: 100748947--100749601 Score: 271
Period size: 87 Copynumber: 7.5 Consensus size: 87
100748937 TCAATACAGA
* ** ** *
100748947 GATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACAGGTGAAAGCCAAATCTGCTATGTCTTTG
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGTCTTTG
100749012 ATTTTCTCCTTGTGAACACAAG
66 ATTTTCTCCTTGTGAACACAAG
* * * * *
100749034 GATGCCAAATCATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCT
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAA-CATCTGAAAGTCAAATCTGCTATGTCTTT
* * **
100749098 G---CTCTCCGT-TGAA-A-TGG
65 GATTTTCTCCTTGTGAACACAAG
* ** * * *
100749115 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTATAAGAACATCCGAAAGTCAAATCTTCTAC
1 -GATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTAT
* * *
100749180 GTCTTCGATTTGT-TTCTTGTAAACACAAG
59 GTCTTTGATTT-TCTCCTTGTGAACACAAG
* * * * * *
100749209 AATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTAC-CT
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGT-CTTT
* * * **
100749273 -A--CTCTCCAT-CGAA-A-TGG
65 GATTTTCTCCTTGTGAACACAAG
* * ** * *
100749290 AGATGGCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTGCTAT
1 -GATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTAT
* ** *
100749355 GTCATCAATTTGT-TCCTTGTAAACACAAG
59 GTCTTTGATTT-TCTCCTTGTGAACACAAG
* * * * * * *
100749384 AATGCCAAATCATATTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTAC-CT
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGT-CTTT
* **
100749448 G---CTCTCC--GTCGAA-A-TGG
65 GATTTTCTCCTTGT-GAACACAAG
* * ** * * * * *
100749465 AGATGTCAGATCTGTTATCTTGGATCTATTTTAGTGTGAGAACATCCGAAAATCAAATCTGTTAT
1 -GATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTAT
* * *
100749530 GTCTTCGATTTGT-TCCTTGTAAACACCAG
59 GTCTTTGATTT-TCTCCTTGTGAACACAAG
*
100749559 AATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAA
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAA
100749602 GGTTAGACTT
Statistics
Matches: 396, Mismatches: 120, Indels: 104
0.64 0.19 0.17
Matches are distributed among these distances:
81 3 0.01
82 31 0.08
83 10 0.03
84 12 0.03
86 56 0.14
87 105 0.27
88 70 0.18
89 56 0.14
91 10 0.03
92 10 0.03
93 30 0.08
94 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (87 bp):
GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGTCTTTG
ATTTTCTCCTTGTGAACACAAG
Found at i:100749289 original size:175 final size:175
Alignment explanation
Indices: 100748987--100749744 Score: 1187
Period size: 175 Copynumber: 4.3 Consensus size: 175
100748977 GTAAACAGGT
* * * *
100748987 GAAAGCCAAATCTGCTATGTCTTTGATTT-TCTCCTTGTGAACACAAGGATGCCAAATCATCTTG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGT-TCCTTGTAAACACAAGAATGCCAAATCATCTTG
* * *
100749051 GATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTTGAAATGG
65 GATCTGCTTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGG
* * *
100749115 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTATAAGAACATCC
129 AGATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
* * *
100749162 GAAAGTCAAATCTTCTACGTCTTCGATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* *
100749227 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTACTCTCCATCGAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
* *
100749292 ATGGCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
131 ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
* * *
100749337 GAAAGTCAAATCTGCTATGTCATCAATTTGTTCCTTGTAAACACAAGAATGCCAAATCATATTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
100749402 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
* * *
100749467 ATGTCAGATCTGTTATCTTGGATCTATTTTAGTGTGAGAACATCC
131 ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
* * *
100749512 GAAAATCAAATCTGTTATGTCTTCGATTTGTTCCTTGTAAACACCAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
*
100749577 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACTTGCTATGTACCTGCTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
100749642 ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
131 ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
* * * * * *
100749687 GAAAATCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAACATAGGGATGCCAAATC
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATC
100749745 TGCTATCTTC
Statistics
Matches: 537, Mismatches: 44, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
175 533 0.99
176 4 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (175 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
Found at i:100749766 original size:44 final size:45
Alignment explanation
Indices: 100749696--100749784 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 45
100749686 CGAAAATCAG
* * * *
100749696 ATCTGCTATGTCTTCGATTTGTTCCCTGTAAACATAGGGATGCCAA
1 ATCTGCTA-GTCTTCAACTTGTTCCCTATAAACACAGGGATGCCAA
100749742 ATCTGCTA-TCTTCAACTTGTTCCCTATAAACACAGGGATGCCA
1 ATCTGCTAGTCTTCAACTTGTTCCCTATAAACACAGGGATGCCA
100749785 TGTTAAAATC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 31 0.79
46 8 0.21
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.33
Consensus pattern (45 bp):
ATCTGCTAGTCTTCAACTTGTTCCCTATAAACACAGGGATGCCAA
Found at i:100749870 original size:88 final size:88
Alignment explanation
Indices: 100749742--100749961 Score: 334
Period size: 88 Copynumber: 2.5 Consensus size: 88
100749732 GGGATGCCAA
* * * *
100749742 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCCATGTTAAAATCTTTGATCTGTT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCT
* *
100749806 TCGCTGTAAGCACATGAATGTCAG
65 TCGATGTAAGCACAGGAATGTCAG
* *
100749830 ATCTGCTATCTTCGATCTGTTCCCTAAAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTT
*
100749895 CGATGTAAGCACAGGAGTGTCAG
66 CGATGTAAGCACAGGAATGTCAG
100749918 ATCTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGATGCCA
1 ATCTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCA
100749962 AATCTTGTTT
Statistics
Matches: 120, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
88 95 0.79
89 25 0.21
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (88 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTT
CGATGTAAGCACAGGAATGTCAG
Found at i:100749934 original size:45 final size:44
Alignment explanation
Indices: 100749792--100749938 Score: 138
Period size: 44 Copynumber: 3.3 Consensus size: 44
100749782 CCATGTTAAA
* * *
100749792 ATCTTTGATCTGTTTCGCTGTAAGCACATGAATGTCAGATCTGCT
1 ATCTTCGATCTG-TTCGCTGTAAGCACAGGAGTGTCAGATCTGCT
* ** * * **
100749837 ATCTTCGATCTGTTCCCTAAAAACACAGG-GATG-C-CATGCTGAA
1 ATCTTCGATCTGTTCGCTGTAAGCACAGGAG-TGTCAGAT-CTGCT
*
100749880 ATCTTCGATCTGCTTCGATGTAAGCACAGGAGTGTCAGATCTGCT
1 ATCTTCGATCTG-TTCGCTGTAAGCACAGGAGTGTCAGATCTGCT
100749925 ATCTTCGATCTGTT
1 ATCTTCGATCTGTT
100749939 TCCCTATAAA
Statistics
Matches: 78, Mismatches: 18, Indels: 13
0.72 0.17 0.12
Matches are distributed among these distances:
42 2 0.03
43 16 0.21
44 30 0.38
45 28 0.36
46 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (44 bp):
ATCTTCGATCTGTTCGCTGTAAGCACAGGAGTGTCAGATCTGCT
Found at i:100758120 original size:22 final size:21
Alignment explanation
Indices: 100758090--100758164 Score: 72
Period size: 17 Copynumber: 3.8 Consensus size: 21
100758080 TACAAATTAA
* *
100758090 ATCTCCAAGATTTCAATATCGT
1 ATCTCCAAGATTGC-ATATCAT
*
100758112 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTGCATATCAT
100758133 ATCT--AAGATTG--TATCAT
1 ATCTCCAAGATTGCATATCAT
100758150 ATCT--AAGATTGCATA
1 ATCTCCAAGATTGCATA
100758165 ACCTTAAAGA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
17 17 0.35
19 9 0.19
21 10 0.21
22 12 0.25
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (21 bp):
ATCTCCAAGATTGCATATCAT
Found at i:100758304 original size:9 final size:9
Alignment explanation
Indices: 100758289--100758322 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
100758279 TTGGACTTTG
100758289 TTTTTTTT-
1 TTTTTTTTA
*
100758297 TATTTTTTA
1 TTTTTTTTA
100758306 TTTTTTTTA
1 TTTTTTTTA
100758315 TTTTTTTT
1 TTTTTTTT
100758323 GAACTTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:100758311 original size:16 final size:16
Alignment explanation
Indices: 100758290--100758320 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
100758280 TGGACTTTGT
100758290 TTTTTTTTATTTTTTA
1 TTTTTTTTATTTTTTA
100758306 TTTTTTTTATTTTTT
1 TTTTTTTTATTTTTT
100758321 TTGAACTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (16 bp):
TTTTTTTTATTTTTTA
Found at i:100764105 original size:26 final size:26
Alignment explanation
Indices: 100764074--100764181 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
100764064 TGAAATTCCC
*
100764074 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
100764100 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
100764126 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
100764152 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
100764178 ATCA
1 ATCA
100764182 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:100774245 original size:21 final size:21
Alignment explanation
Indices: 100774212--100774252 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
100774202 TTAAACATGT
100774212 TGTATCTGTTATTTCTGTTTC
1 TGTATCTGTTATTTCTGTTTC
*
100774233 TGTATTCTG-TATTTGTGTTT
1 TGTA-TCTGTTATTTCTGTTT
100774253 GGGGTGGGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.10, C:0.10, G:0.17, T:0.63
Consensus pattern (21 bp):
TGTATCTGTTATTTCTGTTTC
Found at i:100775199 original size:21 final size:21
Alignment explanation
Indices: 100775159--100775199 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
100775149 ACACGCCCAT
*
100775159 GTGAAGGCCACACACTCTCGG
1 GTGAAGGCCACACACGCTCGG
* *
100775180 GTGAAGGCCATACAGGCTCG
1 GTGAAGGCCACACACGCTCG
100775200 TGTGGAGGGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.32, T:0.15
Consensus pattern (21 bp):
GTGAAGGCCACACACGCTCGG
Found at i:100786484 original size:4 final size:4
Alignment explanation
Indices: 100786475--100786507 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
100786465 TTAAAAATCA
*
100786475 AAAT AAAT AAAT AACT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
100786508 CTTAAAACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:100786485 original size:16 final size:16
Alignment explanation
Indices: 100786451--100786501 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
100786441 TTTTACTTCC
*
100786451 AAAAAT-AAAATAAGTT
1 AAAAATCAAAATAA-AT
100786467 AAAAATCAAAATAAAT
1 AAAAATCAAAATAAAT
*
100786483 AAATAA-CTAAATAAAT
1 AAA-AATCAAAATAAAT
100786499 AAA
1 AAA
100786502 TAAATACTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 22 0.71
17 9 0.29
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.22
Consensus pattern (16 bp):
AAAAATCAAAATAAAT
Found at i:100789715 original size:15 final size:15
Alignment explanation
Indices: 100789691--100789721 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
100789681 ACATCTATTT
*
100789691 AAATAGATGAATTAC
1 AAATAAATGAATTAC
100789706 AAATAAATGAATTAC
1 AAATAAATGAATTAC
100789721 A
1 A
100789722 TACAACATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.06, G:0.10, T:0.26
Consensus pattern (15 bp):
AAATAAATGAATTAC
Found at i:100797816 original size:22 final size:22
Alignment explanation
Indices: 100797793--100797868 Score: 91
Period size: 23 Copynumber: 3.4 Consensus size: 22
100797783 GAACAATAAA
*
100797793 ATTCTCTAGCATGAATAGTGAA-
1 ATTCTCT-GCATGAACAGTGAAT
* *
100797815 ATTCTCTGAAATGAACAGTAAAT
1 ATTCTCTG-CATGAACAGTGAAT
100797838 ATTCTCTGGCATGAACAGTGAAT
1 ATTCTCT-GCATGAACAGTGAAT
100797861 ATTCTCTG
1 ATTCTCTG
100797869 AAAAAAAAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
21 1 0.02
22 18 0.39
23 26 0.57
24 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (22 bp):
ATTCTCTGCATGAACAGTGAAT
Found at i:100797843 original size:23 final size:22
Alignment explanation
Indices: 100797780--100797871 Score: 87
Period size: 23 Copynumber: 4.1 Consensus size: 22
100797770 AGAAAAGACG
*
100797780 AATGAACAATAAAATTCTCT-A
1 AATGAACAGTAAAATTCTCTGA
* * *
100797801 GCATGAATAGTGAAATTCTCTGA
1 -AATGAACAGTAAAATTCTCTGA
*
100797824 AATGAACAGTAAATATTCTCTGG
1 AATGAACAGTAAA-ATTCTCTGA
* *
100797847 CATGAACAGTGAATATTCTCTGA
1 AATGAACAGT-AAAATTCTCTGA
100797870 AA
1 AA
100797872 AAAAAAGTTT
Statistics
Matches: 55, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
22 26 0.47
23 27 0.49
24 2 0.04
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.29
Consensus pattern (22 bp):
AATGAACAGTAAAATTCTCTGA
Found at i:100797850 original size:45 final size:45
Alignment explanation
Indices: 100797780--100797871 Score: 141
Period size: 45 Copynumber: 2.0 Consensus size: 45
100797770 AGAAAAGACG
*
100797780 AATGAACAATAAAATTCTCTAGCATGAATAGTGAA-ATTCTCTGA
1 AATGAACAATAAAATTCTCTAGCATGAACAGTGAATATTCTCTGA
* *
100797824 AATGAACAGTAAATATTCTCTGGCATGAACAGTGAATATTCTCTGA
1 AATGAACAATAAA-ATTCTCTAGCATGAACAGTGAATATTCTCTGA
100797870 AA
1 AA
100797872 AAAAAAGTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 12 0.28
45 20 0.47
46 11 0.26
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.29
Consensus pattern (45 bp):
AATGAACAATAAAATTCTCTAGCATGAACAGTGAATATTCTCTGA
Found at i:100810637 original size:48 final size:48
Alignment explanation
Indices: 100810572--100810768 Score: 351
Period size: 48 Copynumber: 4.1 Consensus size: 48
100810562 GCTGAAATTG
*
100810572 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
100810620 ATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
100810668 ATGTATGAGATAAT-TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGAT-ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
100810716 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
100810764 ATGTA
1 ATGTA
100810769 GGCGATGTGT
Statistics
Matches: 143, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
47 2 0.01
48 139 0.97
49 2 0.01
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:100810965 original size:37 final size:37
Alignment explanation
Indices: 100810915--100810986 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
100810905 GGAAATATAT
*
100810915 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
100810952 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
100810987 CATCTGAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:100815232 original size:26 final size:25
Alignment explanation
Indices: 100815203--100815253 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
100815193 ACTTTAGCCA
*
100815203 TTTTTTTATTTTTACTGTAAATTACT
1 TTTTTTTAATTTTACT-TAAATTACT
*
100815229 TTTTTTTAATTTTGCTTAAATTACT
1 TTTTTTTAATTTTACTTAAATTACT
100815254 AAATTTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.24, C:0.08, G:0.04, T:0.65
Consensus pattern (25 bp):
TTTTTTTAATTTTACTTAAATTACT
Found at i:100815260 original size:26 final size:26
Alignment explanation
Indices: 100815205--100815260 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 26
100815195 TTTAGCCATT
* **
100815205 TTTTTATTTTTACTGTAAATTACTTT
1 TTTTTAATTTTACTGTAAATTACTAA
*
100815231 TTTTTAATTTTGCT-TAAATTACTAA
1 TTTTTAATTTTACTGTAAATTACTAA
*
100815256 ATTTT
1 TTTTT
100815261 CTTTTATTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.62
Consensus pattern (26 bp):
TTTTTAATTTTACTGTAAATTACTAA
Found at i:100829689 original size:16 final size:16
Alignment explanation
Indices: 100829668--100829698 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
100829658 ATATGTTTTC
*
100829668 ATTTGCATCATATATT
1 ATTTGCATCAAATATT
100829684 ATTTGCATCAAATAT
1 ATTTGCATCAAATAT
100829699 CAAATAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (16 bp):
ATTTGCATCAAATATT
Found at i:100829945 original size:56 final size:57
Alignment explanation
Indices: 100829883--100830050 Score: 259
Period size: 56 Copynumber: 3.0 Consensus size: 57
100829873 TCTTACATGT
* * *
100829883 AATCACATATCGATGCCAACGTACTAAACGTAGTCTTACTCGCACATATATATCGA-
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGAG
* * *
100829939 AATCACATATCGATACCAACGTATTAAATGTGGTCTTACTTGCACACATATATC-AG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGAG
*
100829995 AATCACATATTGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
100830051 TGCCATGGTC
Statistics
Matches: 100, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
55 1 0.01
56 98 0.98
57 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (57 bp):
AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGAG
Found at i:100833618 original size:30 final size:30
Alignment explanation
Indices: 100833584--100833645 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
100833574 ATTTATTTTA
100833584 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
* *
100833614 TTGTTTATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
100833644 TT
1 TT
100833646 TCTTGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 27 0.93
31 2 0.07
ACGTcount: A:0.24, C:0.05, G:0.10, T:0.61
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:100839811 original size:26 final size:26
Alignment explanation
Indices: 100839782--100839833 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
100839772 TCCCCATAGG
*
100839782 ATTGTTTGTATATTCCTGAGTAGCAC
1 ATTGTTTGTATATTCCTAAGTAGCAC
100839808 ATTGTTTGTATATTCCTAAGTAGCAC
1 ATTGTTTGTATATTCCTAAGTAGCAC
100839834 CAATCGACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.42
Consensus pattern (26 bp):
ATTGTTTGTATATTCCTAAGTAGCAC
Found at i:100839994 original size:6 final size:6
Alignment explanation
Indices: 100839980--100840018 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
100839970 AGAACATGAC
*
100839980 AAATGA AAATCA AAATCA AAATCA AAAT-A AAATCA AAAT
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAAT
100840019 GAAATGCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.69, C:0.10, G:0.03, T:0.18
Consensus pattern (6 bp):
AAATCA
Found at i:100840011 original size:11 final size:11
Alignment explanation
Indices: 100839980--100840044 Score: 67
Period size: 12 Copynumber: 5.6 Consensus size: 11
100839970 AGAACATGAC
100839980 AAATGAAAATCA
1 AAAT-AAAATCA
100839992 AAATCAAAATCA
1 AAAT-AAAATCA
100840004 AAATAAAATCA
1 AAATAAAATCA
*
100840015 AAATGAAATGCA
1 AAATAAAAT-CA
* * *
100840027 AAACAAATTAA
1 AAATAAAATCA
100840038 AAATAAA
1 AAATAAA
100840045 TAGACTCAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
11 22 0.49
12 23 0.51
ACGTcount: A:0.69, C:0.09, G:0.05, T:0.17
Consensus pattern (11 bp):
AAATAAAATCA
Found at i:100840045 original size:11 final size:11
Alignment explanation
Indices: 100839989--100840045 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
100839979 CAAATGAAAA
*
100839989 TCAAAATCAAAA
1 TCAAAAT-AAAT
*
100840001 TCAAAATAAAA
1 TCAAAATAAAT
100840012 TCAAAATGAAAT
1 TCAAAAT-AAAT
* *
100840024 GCAAAACAAAT
1 TCAAAATAAAT
*
100840035 TAAAAATAAAT
1 TCAAAATAAAT
100840046 AGACTCAAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
11 23 0.61
12 15 0.39
ACGTcount: A:0.67, C:0.11, G:0.04, T:0.19
Consensus pattern (11 bp):
TCAAAATAAAT
Found at i:100843262 original size:44 final size:42
Alignment explanation
Indices: 100843213--100843364 Score: 178
Period size: 44 Copynumber: 3.4 Consensus size: 42
100843203 TTCCTATTCC
* * *
100843213 TAATTTAAAACATGTTAAATTATAGTACAATAAACATGCATATT
1 TAATTTAAAACA--TTAAATTATAATACAATATACATACATATT
*
100843257 TAATTTAAAGGACATTAAACTATAATACAATATACATACATATT
1 TAATTTAAA--ACATTAAATTATAATACAATATACATACATATT
*
100843301 TATTTTAAAACACATTAAATTATAATACAATATACATACATATT
1 TAATTT-AAA-ACATTAAATTATAATACAATATACATACATATT
*
100843345 TAGTTTAAAATACATTAAAT
1 TAATTT-AAA-ACATTAAAT
100843365 GAAATAAATT
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
44 90 0.94
45 3 0.03
46 3 0.03
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (42 bp):
TAATTTAAAACATTAAATTATAATACAATATACATACATATT
Found at i:100843357 original size:22 final size:22
Alignment explanation
Indices: 100843288--100843359 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
100843278 ATAATACAAT
*
100843288 ATACATACATATTTATTTTAAA
1 ATACATACATATTTAATTTAAA
* ** *
100843310 ACACATTA-A-ATTATAATACAAT
1 ATACA-TACATATT-TAATTTAAA
*
100843332 ATACATACATATTTAGTTTAAA
1 ATACATACATATTTAATTTAAA
100843354 ATACAT
1 ATACAT
100843360 TAAATGAAAT
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 5 0.14
22 26 0.72
23 5 0.14
ACGTcount: A:0.49, C:0.11, G:0.01, T:0.39
Consensus pattern (22 bp):
ATACATACATATTTAATTTAAA
Found at i:100843520 original size:95 final size:93
Alignment explanation
Indices: 100843407--100843638 Score: 347
Period size: 95 Copynumber: 2.5 Consensus size: 93
100843397 GAAAAATACG
*
100843407 TAAATTAAAATGAAAAGAAAGATAATTTAAATGAAATAAAAAAATTAAAGTAAAATGGAAAGAAA
1 TAAATTTAAATGAAAAGAAAGATAATTTAAATGAAATAAAAAAATTAAAGTAAAATGGAAAGAAA
* * *
100843472 GATAATTTAAATGAAATGAGTAAAGAAAT
66 AATAATTTAAATGAAATAAG-AAAAAAAT
* * *
100843501 TAAATTTAAATAGAAAAGAAAGATAATTTAAATGACATGAAAAAAATTAAATTAAAATGGAAATA
1 TAAATTTAAAT-GAAAAGAAAGATAATTTAAATGAAAT-AAAAAAATTAAAGTAAAATGGAAAGA
100843566 AAAATAATTTAAATGAAATAAGAAAAAAAT
64 AAAATAATTTAAATGAAATAAGAAAAAAAT
* *
100843596 TAAATTTAAATGAAAAAAAAAGATAATTTAAATGAAATGAAAA
1 TAAATTTAAATG-AAAAGAAAGATAATTTAAATGAAATAAAAA
100843639 TAATAAAAAA
Statistics
Matches: 125, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
94 15 0.12
95 66 0.53
96 44 0.35
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (93 bp):
TAAATTTAAATGAAAAGAAAGATAATTTAAATGAAATAAAAAAATTAAAGTAAAATGGAAAGAAA
AATAATTTAAATGAAATAAGAAAAAAAT
Found at i:100843631 original size:22 final size:21
Alignment explanation
Indices: 100843409--100843632 Score: 124
Period size: 22 Copynumber: 9.6 Consensus size: 21
100843399 AAAATACGTA
* * *
100843409 AATTAAAATGAAAAGAAAGAT
1 AATTTAAATGAAAAAAAAAAT
100843430 AATTTAAATGAAATAAAAAAATT
1 AATTTAAATGAAA-AAAAAAA-T
* * * * *
100843453 AAAGTAAAATGGAAAGAAAGAT
1 -AATTTAAATGAAAAAAAAAAT
100843475 AATTTAAATGAAATGAGTAAAGAAATT
1 AATTTAAATGAAA--A--AAA-AAA-T
* *
100843502 AAATTTAAATAGAAAAGAAAGAT
1 -AATTTAAAT-GAAAAAAAAAAT
*
100843525 AATTTAAATGACATGAAAAAAATT
1 AATTTAAATGA-A--AAAAAAAAT
* * *
100843549 AAATTAAAATGGAAATAAAAAT
1 -AATTTAAATGAAAAAAAAAAT
100843571 AATTTAAATGAAATAAGAAAAAAATT
1 AATTTAAATG--A-AA-AAAAAAA-T
100843597 AAATTTAAATGAAAAAAAAAGAT
1 -AATTTAAATGAAAAAAAAA-AT
100843620 AATTTAAATGAAA
1 AATTTAAATGAAA
100843633 TGAAAATAAT
Statistics
Matches: 156, Mismatches: 25, Indels: 43
0.70 0.11 0.19
Matches are distributed among these distances:
21 33 0.21
22 36 0.23
23 15 0.10
24 24 0.15
25 20 0.13
26 3 0.02
27 12 0.08
28 9 0.06
29 4 0.03
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (21 bp):
AATTTAAATGAAAAAAAAAAT
Found at i:100843638 original size:22 final size:22
Alignment explanation
Indices: 100843409--100843638 Score: 130
Period size: 21 Copynumber: 9.9 Consensus size: 22
100843399 AAAATACGTA
* *
100843409 AATTAAAATGAAAAG-AAAGAT
1 AATTTAAATGAAATGAAAAGAT
* *
100843430 AATTTAAATGAAATAAAAAAATT
1 AATTTAAATGAAATGAAAAGA-T
* *
100843453 AAAGTAAAATGGAAA-G-AAAGAT
1 -AATTTAAAT-GAAATGAAAAGAT
100843475 AATTTAAATGAAATGAGTAAAGAAATT
1 AATTTAAATGAAATGA--AAAG--A-T
*
100843502 AAATTTAAATAGAAAAG-AAAGAT
1 -AATTTAAAT-GAAATGAAAAGAT
* *
100843525 AATTTAAATGACATGAAAAAAATT
1 AATTTAAATGAAATG-AAAAGA-T
*
100843549 AAATTAAAATGGAAAT-AAAA-AT
1 -AATTTAAAT-GAAATGAAAAGAT
*
100843571 AATTTAAATGAAATAAGAAAAAAATT
1 AATTTAAATGAAAT--G-AAAAGA-T
**
100843597 AAATTTAAATGAAAAAAAAAGAT
1 -AATTTAAATGAAATGAAAAGAT
100843620 AATTTAAATGAAATGAAAA
1 AATTTAAATGAAATGAAAA
100843639 TAATAAAAAA
Statistics
Matches: 162, Mismatches: 22, Indels: 49
0.70 0.09 0.21
Matches are distributed among these distances:
20 9 0.06
21 32 0.20
22 32 0.20
23 12 0.07
24 26 0.16
25 13 0.08
26 10 0.06
27 14 0.09
28 9 0.06
29 5 0.03
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.24
Consensus pattern (22 bp):
AATTTAAATGAAATGAAAAGAT
Found at i:100844235 original size:6 final size:5
Alignment explanation
Indices: 100844215--100844266 Score: 50
Period size: 5 Copynumber: 9.6 Consensus size: 5
100844205 ATAATAATTT
* *
100844215 AAATG AAATAG AAATG TAAATG AAATG GAATGG AAATGG AAATT AAATG
1 AAATG AAAT-G AAATG -AAATG AAATG AAAT-G AAAT-G AAATG AAATG
100844264 AAA
1 AAA
100844267 AAAAAAGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 20 0.50
6 20 0.50
ACGTcount: A:0.58, C:0.00, G:0.21, T:0.21
Consensus pattern (5 bp):
AAATG
Found at i:100844239 original size:11 final size:10
Alignment explanation
Indices: 100844215--100844266 Score: 50
Period size: 11 Copynumber: 4.8 Consensus size: 10
100844205 ATAATAATTT
100844215 AAATGAAATAG
1 AAATGAAAT-G
100844226 AAATGTAAATG
1 AAATG-AAATG
*
100844237 AAATGGAATGG
1 AAATGAAAT-G
*
100844248 AAATGGAAATT
1 AAAT-GAAATG
100844259 AAATGAAA
1 AAATGAAA
100844267 AAAAAAGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
10 7 0.20
11 20 0.57
12 8 0.23
ACGTcount: A:0.58, C:0.00, G:0.21, T:0.21
Consensus pattern (10 bp):
AAATGAAATG
Found at i:100844250 original size:22 final size:22
Alignment explanation
Indices: 100844215--100844266 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
100844205 ATAATAATTT
*
100844215 AAATGAAATAGAAATGTAAATG
1 AAATGAAATAGAAATGGAAATG
* * *
100844237 AAATGGAATGGAAATGGAAATT
1 AAATGAAATAGAAATGGAAATG
100844259 AAATGAAA
1 AAATGAAA
100844267 AAAAAAGTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.58, C:0.00, G:0.21, T:0.21
Consensus pattern (22 bp):
AAATGAAATAGAAATGGAAATG
Found at i:100847800 original size:20 final size:20
Alignment explanation
Indices: 100847777--100847826 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
100847767 TTTTTCATTT
100847777 CATTTAAATTATTTTTTCTC
1 CATTTAAATTATTTTTTCTC
100847797 CATTTAAATTATTTTTTCTC
1 CATTTAAATTATTTTTTCTC
*
100847817 AATTTAAATT
1 CATTTAAATT
100847827 TAATCTTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (20 bp):
CATTTAAATTATTTTTTCTC
Found at i:100850149 original size:18 final size:18
Alignment explanation
Indices: 100850126--100850162 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
100850116 AAGAATTCAC
100850126 AATGTTAGTAGATGTGAA
1 AATGTTAGTAGATGTGAA
100850144 AATGTTAGTAGATGTGAA
1 AATGTTAGTAGATGTGAA
100850162 A
1 A
100850163 TTCACTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.32
Consensus pattern (18 bp):
AATGTTAGTAGATGTGAA
Found at i:100850192 original size:30 final size:30
Alignment explanation
Indices: 100850158--100850218 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
100850148 TTAGTAGATG
100850158 TGAAATTCACTTTTTCTACAGTAATTCTTT
1 TGAAATTCACTTTTTCTACAGTAATTCTTT
* *
100850188 TGAAATTCACTTTTTTTACAGTAATTGTTT
1 TGAAATTCACTTTTTCTACAGTAATTCTTT
100850218 T
1 T
100850219 ACTTAAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.26, C:0.13, G:0.08, T:0.52
Consensus pattern (30 bp):
TGAAATTCACTTTTTCTACAGTAATTCTTT
Found at i:100855908 original size:17 final size:17
Alignment explanation
Indices: 100855888--100855920 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
100855878 TTCTTTTGTT
*
100855888 TTTTCTTTATTTATTTA
1 TTTTATTTATTTATTTA
100855905 TTTTATTTATTTATTT
1 TTTTATTTATTTATTT
100855921 TGTTTATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTTATTTATTTA
Found at i:100855911 original size:13 final size:13
Alignment explanation
Indices: 100855893--100855927 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
100855883 TTGTTTTTTC
100855893 TTTATTTATTTAT
1 TTTATTTATTTAT
100855906 TTTATTTATTTAT
1 TTTATTTATTTAT
*
100855919 TTTGTTTAT
1 TTTATTTAT
100855928 AATATTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (13 bp):
TTTATTTATTTAT
Found at i:100855949 original size:14 final size:15
Alignment explanation
Indices: 100855924--100855956 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
100855914 TTTATTTTGT
100855924 TTATAATATTTTAAA
1 TTATAATATTTTAAA
100855939 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
100855953 TTAT
1 TTAT
100855957 TTTTAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:100856474 original size:27 final size:26
Alignment explanation
Indices: 100856444--100856538 Score: 127
Period size: 27 Copynumber: 3.5 Consensus size: 26
100856434 ATGTTAGTGC
* *
100856444 CAGAGGCAGCACCAGTGTTGCCTCTAG
1 CAGAGGCGGCACCAATGTTGCCTCT-G
100856471 CAGAGGCGGCACCAATGTTGCCTCTGG
1 CAGAGGCGGCACCAATGTTGCCTCT-G
*
100856498 CAGAGACGGCACCAATGTTGCCTCTG
1 CAGAGGCGGCACCAATGTTGCCTCTG
*
100856524 ACAGATGCGGCACCA
1 -CAGAGGCGGCACCA
100856539 GTTGTGTGGG
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.02
27 60 0.98
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (26 bp):
CAGAGGCGGCACCAATGTTGCCTCTG
Found at i:100856965 original size:145 final size:145
Alignment explanation
Indices: 100856604--100857033 Score: 602
Period size: 143 Copynumber: 3.0 Consensus size: 145
100856594 ATAAGTAAAA
* * * * *
100856604 TATTTTCGTATATTATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
* * * *
100856668 TTTTTTATATTAATTTAATAAATAACCCTGATTTT-GATACTTTCTTTGTATTTTTTTCGTATCT
66 TTTTTTATATT-TTTTAATAAATAACCCTGATTTTAG-CACTTTATTCGTATTTTTTTCGTATCT
100856732 TATTTTTTAAAATATAT
129 TATTTTTTAAAATATAT
* * *
100856749 TATTTTCATATTTTATTTC---ATATTATTTTAGTACATAATGTTTCAAATGTATTATTAAAGTA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
*
100856811 TTTTTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTCATATTTTTTT-GTATCTT
66 TTTTTTATATTTTTT-AATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTT
100856875 ATTTTTTAAAATATAT
130 ATTTTTTAAAATATAT
* *
100856891 TATTTTTGTATTTTATTTCTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
* *
100856956 TTTTTTATATTTTTTAATAAATAACCTTGATTTTAGCACTTTATTCGTATTTTTATTTTCGTATA
66 TTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTA--TTT-TTTTCGTATC
100857021 TTATTTTATTAAA
128 TTATTTT-TTAAA
100857034 TTAATATAAT
Statistics
Matches: 253, Mismatches: 21, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
142 43 0.17
143 83 0.33
144 33 0.13
145 71 0.28
146 3 0.01
147 4 0.02
148 11 0.04
149 5 0.02
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.57
Consensus pattern (145 bp):
TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
TTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTTA
TTTTTTAAAATATAT
Found at i:100857699 original size:35 final size:33
Alignment explanation
Indices: 100857634--100857729 Score: 85
Period size: 35 Copynumber: 2.9 Consensus size: 33
100857624 TTTTAAATAA
* *
100857634 AATTTAAAAAATAATTTGAATATCTTTAAAAAT
1 AATTTAAAAAATAATTTAAATATCTATAAAAAT
100857667 AATTTAAAAATCATAATTTAAAATAT-TATAAAACA-
1 AATTTAAAAA--ATAATTT-AAATATCTATAAAA-AT
*
100857702 AA-TTAAATAAT-ATTTAAATTAT-TATAAA
1 AATTTAAAAAATAATTTAAA-TATCTATAAA
100857730 GCTAATAACA
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
30 3 0.05
31 13 0.24
32 2 0.04
33 10 0.18
34 6 0.11
35 15 0.27
36 6 0.11
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (33 bp):
AATTTAAAAAATAATTTAAATATCTATAAAAAT
Found at i:100857763 original size:17 final size:15
Alignment explanation
Indices: 100857741--100857798 Score: 64
Period size: 14 Copynumber: 3.7 Consensus size: 15
100857731 CTAATAACAA
100857741 ATTTAAAAGTTTAAAAT
1 ATTTAAAA-TTT-AAAT
100857758 ATTTAAATATTTAAAT
1 ATTTAAA-ATTTAAAT
**
100857774 ATTTAAAAAAT-AAT
1 ATTTAAAATTTAAAT
100857788 ATTTAAAATTT
1 ATTTAAAATTT
100857799 TAAAAAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 12 0.33
15 2 0.06
16 11 0.31
17 10 0.28
18 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (15 bp):
ATTTAAAATTTAAAT
Found at i:100857765 original size:8 final size:8
Alignment explanation
Indices: 100857741--100857780 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
100857731 CTAATAACAA
100857741 ATTTAAA-
1 ATTTAAAT
100857748 AGTTTAAAAT
1 A-TTT-AAAT
100857758 ATTTAAAT
1 ATTTAAAT
100857766 ATTTAAAT
1 ATTTAAAT
100857774 ATTTAAA
1 ATTTAAA
100857781 AAATAATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 1 0.03
8 22 0.73
9 6 0.20
10 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (8 bp):
ATTTAAAT
Found at i:100857791 original size:22 final size:22
Alignment explanation
Indices: 100857763--100857817 Score: 87
Period size: 22 Copynumber: 2.5 Consensus size: 22
100857753 AAAATATTTA
100857763 AATATTT-AAATATTTAAAAAAT
1 AATATTTAAAAT-TTTAAAAAAT
100857785 AATATTTAAAATTTTAAAAAAT
1 AATATTTAAAATTTTAAAAAAT
100857807 AAT-TTTAAAAT
1 AATATTTAAAAT
100857818 ATATAATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
21 8 0.25
22 20 0.62
23 4 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
AATATTTAAAATTTTAAAAAAT
Found at i:100857909 original size:14 final size:14
Alignment explanation
Indices: 100857886--100857961 Score: 61
Period size: 14 Copynumber: 5.5 Consensus size: 14
100857876 TTTTAAAATT
100857886 AATAATAATAAATAA
1 AATAA-AATAAATAA
100857901 AATAAAATAAATAA
1 AATAAAATAAATAA
*
100857915 AGA-AAAA-AAACAA
1 A-ATAAAATAAATAA
*
100857928 AAGAAAAGTAAA-AA
1 AATAAAA-TAAATAA
* *
100857942 AGTCAAA-AAATAA
1 AATAAAATAAATAA
100857955 AATAAAA
1 AATAAAA
100857962 AACAAAGACT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
12 4 0.08
13 17 0.34
14 20 0.40
15 9 0.18
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.14
Consensus pattern (14 bp):
AATAAAATAAATAA
Found at i:100857934 original size:27 final size:27
Alignment explanation
Indices: 100857899--100857961 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
100857889 AATAATAAAT
100857899 AAAATAAAA-TAAATAAAGAAAAAAAAC
1 AAAATAAAAGTAAA-AAAGAAAAAAAAC
* ** *
100857926 AAAAGAAAAGTAAAAAAGTCAAAAAAT
1 AAAATAAAAGTAAAAAAGAAAAAAAAC
100857953 AAAATAAAA
1 AAAATAAAA
100857962 AACAAAGACT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 26 0.87
28 4 0.13
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.11
Consensus pattern (27 bp):
AAAATAAAAGTAAAAAAGAAAAAAAAC
Found at i:100867970 original size:27 final size:25
Alignment explanation
Indices: 100867921--100867988 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 25
100867911 TACGTGTGGG
*
100867921 AAATATATATTTAAAATACTTAATA
1 AAATATATATTTAAAATAATTAATA
*
100867946 AAATATATGATTTGAAATTAATTAATCA
1 AAATATAT-ATTT-AAAATAATTAAT-A
* *
100867974 TAATA-ATATATAAAA
1 AAATATATATTTAAAA
100867989 AATGTATAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
25 11 0.31
26 7 0.20
27 12 0.34
28 5 0.14
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (25 bp):
AAATATATATTTAAAATAATTAATA
Found at i:100870113 original size:14 final size:15
Alignment explanation
Indices: 100870089--100870121 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
100870079 ATGTATTGTC
100870089 TTTTATCTTTATTTA
1 TTTTATCTTTATTTA
100870104 TTTTAT-TTTATTTA
1 TTTTATCTTTATTTA
100870118 TTTT
1 TTTT
100870122 TTATGATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTATCTTTATTTA
Found at i:100870195 original size:32 final size:31
Alignment explanation
Indices: 100870154--100870263 Score: 98
Period size: 32 Copynumber: 3.4 Consensus size: 31
100870144 TGAAATGTAT
* *
100870154 ATTTGAAATATATTATAATATATATTTTTTAT
1 ATTTTAAATATATTATAA-ATATATTTTTTAA
100870186 ATTTTAAATATATATATTTGAAAT-TATTTTTCTAA
1 ATTTTAAATATAT-TA--T-AAATATATTTTT-TAA
* *
100870221 ATTTTAAATATTATTTTTAAATAT-TTTTTAAA
1 ATTTTAAATA-TA-TTATAAATATATTTTTTAA
100870253 ATTTTAAATAT
1 ATTTTAAATAT
100870264 TATTTTTTAA
Statistics
Matches: 66, Mismatches: 4, Indels: 17
0.76 0.05 0.20
Matches are distributed among these distances:
31 1 0.02
32 24 0.36
33 11 0.17
34 9 0.14
35 15 0.23
36 5 0.08
37 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (31 bp):
ATTTTAAATATATTATAAATATATTTTTTAA
Found at i:100870268 original size:12 final size:12
Alignment explanation
Indices: 100870221--100870269 Score: 54
Period size: 13 Copynumber: 4.4 Consensus size: 12
100870211 ATTTTTCTAA
100870221 ATTTTAAATATT
1 ATTTTAAATATT
100870233 ATTTTTAAATATT
1 A-TTTTAAATATT
100870246 -TTTT-AA-A--
1 ATTTTAAATATT
100870253 ATTTTAAATATT
1 ATTTTAAATATT
100870265 ATTTT
1 ATTTT
100870270 TTAAAATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
8 4 0.13
9 3 0.10
10 3 0.10
11 4 0.13
12 6 0.19
13 11 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
ATTTTAAATATT
Found at i:100870271 original size:33 final size:32
Alignment explanation
Indices: 100870175--100870279 Score: 131
Period size: 32 Copynumber: 3.2 Consensus size: 32
100870165 ATTATAATAT
* * *
100870175 ATATTTTTTATATTTTAAATATATATATTTGAA
1 ATATTTTTTAAATTTTAAATAT-TATTTTTTAA
100870208 ATTATTTTTCTAAATTTTAAATATTA-TTTTTAA
1 A-TATTTTT-TAAATTTTAAATATTATTTTTTAA
100870241 ATATTTTTTAAAATTTTAAATATTATTTTTTAAA
1 ATATTTTTT-AAATTTTAAATATTATTTTTT-AA
100870275 ATATT
1 ATATT
100870280 AAATATATTT
Statistics
Matches: 64, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
31 1 0.02
32 22 0.34
33 12 0.19
34 16 0.25
35 13 0.20
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (32 bp):
ATATTTTTTAAATTTTAAATATTATTTTTTAA
Found at i:100870288 original size:21 final size:21
Alignment explanation
Indices: 100870241--100870306 Score: 89
Period size: 22 Copynumber: 3.1 Consensus size: 21
100870231 TTATTTTTAA
*
100870241 ATATTTTTTAAAATTTTAAAT
1 ATATTTTTTAAAATATTAAAT
100870262 ATTATTTTTTAAAATATTAAAT
1 A-TATTTTTTAAAATATTAAAT
*
100870284 ATA-TTTTTAATAATATAAAAT
1 ATATTTTTTAA-AATATTAAAT
100870305 AT
1 AT
100870307 TTAAATATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.17
21 14 0.34
22 20 0.49
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
ATATTTTTTAAAATATTAAAT
Found at i:100870325 original size:19 final size:18
Alignment explanation
Indices: 100870235--100870325 Score: 60
Period size: 19 Copynumber: 4.7 Consensus size: 18
100870225 TAAATATTAT
*
100870235 TTTTAAATATTTTTTAAAA
1 TTTTAAATA-TATTTAAAA
100870254 TTTTAAATATTATTTTTTAAAA
1 TTTTAAATA-TA---TTTAAAA
*
100870276 TATTAAATATATTTTTAATAA
1 TTTTAAATATA--TTTAA-AA
*
100870297 -TATAAA-ATATTTAAATA
1 TTTTAAATATATTTAAA-A
100870314 TTTTAAATATAT
1 TTTTAAATATAT
100870326 GACCTTTCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
16 1 0.02
17 6 0.10
18 5 0.08
19 18 0.30
20 11 0.18
21 4 0.07
22 15 0.25
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTAAATATATTTAAAA
Found at i:100870355 original size:20 final size:20
Alignment explanation
Indices: 100870330--100870371 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
100870320 ATATATGACC
*
100870330 TTTCAAGTTTATTATTAGTT
1 TTTCAAATTTATTATTAGTT
100870350 TTTCAAATTTATTATTAGTT
1 TTTCAAATTTATTATTAGTT
100870370 TT
1 TT
100870372 ATAATATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.62
Consensus pattern (20 bp):
TTTCAAATTTATTATTAGTT
Found at i:100870381 original size:29 final size:28
Alignment explanation
Indices: 100870349--100870423 Score: 98
Period size: 31 Copynumber: 2.6 Consensus size: 28
100870339 TATTATTAGT
100870349 TTTTCAAATTTATTATTAGTTTTATAATA
1 TTTT-AAATTTATTATTAGTTTTATAATA
*
100870378 TTTTAAATATTATTTAATTTGTTTTATAATA
1 TTTTAAAT-TTA-TT-ATTAGTTTTATAATA
100870409 TTTTAAA-TTATTATT
1 TTTTAAATTTATTATT
100870424 TTTAAATTAT
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
27 3 0.07
28 6 0.14
29 10 0.24
30 2 0.05
31 21 0.50
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (28 bp):
TTTTAAATTTATTATTAGTTTTATAATA
Found at i:100870417 original size:21 final size:21
Alignment explanation
Indices: 100870378--100870417 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
100870368 TTTTATAATA
*
100870378 TTTTAAATATTATTTAATTTG
1 TTTTAAATATTATTAAATTTG
100870399 TTTTATAATATT-TTAAATT
1 TTTTA-AATATTATTAAATT
100870418 ATTATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTAAATATTATTAAATTTG
Found at i:100870433 original size:29 final size:30
Alignment explanation
Indices: 100870370--100870433 Score: 69
Period size: 31 Copynumber: 2.1 Consensus size: 30
100870360 ATTATTAGTT
***
100870370 TTATAATATTTTAAATATTATTTAATTTGTT
1 TTATAATATTTTAAATATTATTT-ATTTAAA
100870401 TTATAATATTTTAAATTATTA-TT-TTTAAA
1 TTATAATATTTTAAA-TATTATTTATTTAAA
100870430 TTAT
1 TTAT
100870434 TTTTAAAGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 7 0.24
31 17 0.59
32 5 0.17
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (30 bp):
TTATAATATTTTAAATATTATTTATTTAAA
Found at i:100870502 original size:21 final size:22
Alignment explanation
Indices: 100870478--100870531 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
100870468 TTTAAAAGTT
* * *
100870478 AAAAATAATATTTTATTTAA-A
1 AAAAATAAAATTTAAATTAATA
*
100870499 AAAAGTAAAATTTAAATTAATTA
1 AAAAATAAAATTTAAATTAA-TA
100870522 AAAAATAAAA
1 AAAAATAAAA
100870532 AAATTTGTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 16 0.62
23 10 0.38
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAAATAAAATTTAAATTAATA
Found at i:100870597 original size:6 final size:7
Alignment explanation
Indices: 100870584--100870619 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
100870574 AAATATATAT
100870584 ATTAAAA
1 ATTAAAA
100870591 ATTAAAA
1 ATTAAAA
100870598 ATT-AAA
1 ATTAAAA
100870604 ATTAAAA
1 ATTAAAA
100870611 ATTAAAA
1 ATTAAAA
100870618 AT
1 AT
100870620 ATATATTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.21
7 22 0.79
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
ATTAAAA
Found at i:100870604 original size:13 final size:13
Alignment explanation
Indices: 100870588--100870617 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
100870578 ATATATATTA
100870588 AAAATTAAAAATT
1 AAAATTAAAAATT
100870601 AAAATTAAAAATT
1 AAAATTAAAAATT
100870614 AAAA
1 AAAA
100870618 ATATATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
AAAATTAAAAATT
Found at i:100870627 original size:13 final size:13
Alignment explanation
Indices: 100870556--100870627 Score: 54
Period size: 13 Copynumber: 5.4 Consensus size: 13
100870546 AAGATTTATT
* *
100870556 TATTAAAAAAATT
1 TATTAAAAATATA
*
100870569 TATTTAAATATATA
1 TA-TTAAAAATATA
*
100870583 TATTAAAAATTAAA
1 TATTAAAAA-TATA
* * *
100870597 AATTAAAATTAAA
1 TATTAAAAATATA
*
100870610 AATTAAAAATATA
1 TATTAAAAATATA
100870623 TATTA
1 TATTA
100870628 TAACTGGTTA
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
13 27 0.57
14 20 0.43
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TATTAAAAATATA
Found at i:100870627 original size:20 final size:20
Alignment explanation
Indices: 100870572--100870627 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
100870562 AAAAATTTAT
*
100870572 TTAAATATATATATTAAAAA
1 TTAAAAATATATATTAAAAA
*
100870592 TTAAAAAT-TAAAATTAAAAA
1 TTAAAAATAT-ATATTAAAAA
100870612 TTAAAAATATATATTA
1 TTAAAAATATATATTA
100870628 TAACTGGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TTAAAAATATATATTAAAAA
Found at i:100871247 original size:63 final size:64
Alignment explanation
Indices: 100871172--100871293 Score: 219
Period size: 63 Copynumber: 1.9 Consensus size: 64
100871162 TAAAACTTAA
100871172 AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTTAAAATTTTAATATATTTTTTT
1 AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTTAAAATTTTAATATATTTTTTT
**
100871236 AAAAAA-TAAATATATTAAAAAATGTTAAGTATAATTAATTTTAAAATTTTAATATATT
1 AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTTAAAATTTTAATATATT
100871294 CAATATATTT
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
63 50 0.89
64 6 0.11
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (64 bp):
AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTTAAAATTTTAATATATTTTTTT
Found at i:100871432 original size:17 final size:17
Alignment explanation
Indices: 100871410--100871442 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
100871400 ACTTAAAAAA
100871410 TTTTAAATATATTAAAT
1 TTTTAAATATATTAAAT
*
100871427 TTTTAAATATGTTAAA
1 TTTTAAATATATTAAA
100871443 AGAAAATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
TTTTAAATATATTAAAT
Found at i:100886105 original size:46 final size:46
Alignment explanation
Indices: 100886032--100886304 Score: 359
Period size: 46 Copynumber: 5.9 Consensus size: 46
100886022 TTTCTGAAAT
*
100886032 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATCATAC
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAC
* *
100886078 AAAATCTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAC
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAC
*
100886124 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAC
** * *
100886170 GAAATGTGTAAGACCATGGTTGAAAGATACCATGAAAACATGACAGG
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATA-C
** * *
100886217 GAAATGAATAAGACGATGGTTGAAAGATACCATGGCAACATGACA-
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAC
* * * * * *
100886262 GAAAATGAGTAAGACCATAGTTAAAAGACACTATGGCATCATG
1 G-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
100886305 TCGAAGATAA
Statistics
Matches: 203, Mismatches: 22, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
45 1 0.00
46 162 0.80
47 40 0.20
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAC
Found at i:100890329 original size:30 final size:27
Alignment explanation
Indices: 100890261--100890333 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 27
100890251 TTTGAATATC
*
100890261 TTTAAAATTA-ATTTTAAAATTAATAAT
1 TTTAAAATTATA-TTTAAAATTAAAAAT
100890288 TTATAAAAATTATATTTAAAATTTAAAAAAT
1 TT-T-AAAATTATATTTAAAA-TT-AAAAAT
100890319 ATTTAAAATTATATT
1 -TTTAAAATTATATT
100890334 ATTAAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
27 2 0.05
28 1 0.03
29 14 0.36
30 14 0.36
31 6 0.15
32 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (27 bp):
TTTAAAATTATATTTAAAATTAAAAAT
Found at i:100890493 original size:90 final size:90
Alignment explanation
Indices: 100890335--100890500 Score: 248
Period size: 90 Copynumber: 1.8 Consensus size: 90
100890325 AATTATATTA
*
100890335 TTAAAATATTATAAAACAAATAATAAATTTGAAATGTCATATCTTTAAAAATAATATATTTTAAA
1 TTAAAATATTATAAAACAAATAATAAATTTGAAAGGTCATATCTTTAAAAATAATATATTTT-AA
100890400 TATTA-TAAAACAACTTAAATAATAT
65 TATTACTAAAACAACTTAAATAATAT
* *
100890425 TTAAAATATTATAAAACTAATAATAAATTTGAAAGGTCATATCTTTAGAATATTTAA-ATATTTT
1 TTAAAATATTATAAAACAAATAATAAATTTGAAAGGTCATATCTTTA-AA-A-ATAATATATTTT
100890489 -ATATTACTAAAA
63 AATATTACTAAAA
100890501 ATATATTTAA
Statistics
Matches: 69, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
90 51 0.74
91 7 0.10
92 8 0.12
93 3 0.04
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (90 bp):
TTAAAATATTATAAAACAAATAATAAATTTGAAAGGTCATATCTTTAAAAATAATATATTTTAAT
ATTACTAAAACAACTTAAATAATAT
Found at i:100890518 original size:19 final size:20
Alignment explanation
Indices: 100890482--100890520 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
100890472 GAATATTTAA
*
100890482 ATATTTTATATTACTAAAAAT
1 ATATTTAATATTA-TAAAAAT
100890503 ATATTTAATATT-TAAAAA
1 ATATTTAATATTATAAAAA
100890521 ATAATAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
ATATTTAATATTATAAAAAT
Found at i:100890521 original size:21 final size:20
Alignment explanation
Indices: 100890497--100890548 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
100890487 TTATATTACT
* *
100890497 AAAAATATATTTAATATTTA
1 AAAAATATAATTAAAATTTA
100890517 AAAAATAATAATTAAAATTTTA
1 AAAAAT-ATAATTAAAA-TTTA
100890539 AAAAATATAA
1 AAAAATATAA
100890549 AAAATAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 6 0.21
21 12 0.43
22 10 0.36
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAATATAATTAAAATTTA
Found at i:100890553 original size:31 final size:32
Alignment explanation
Indices: 100890515--100890578 Score: 105
Period size: 31 Copynumber: 2.0 Consensus size: 32
100890505 ATTTAATATT
100890515 TAAAAAATAATAA-TTAAAATTTTA-AAAAATA
1 TAAAAAATAATAATTTAAAA-TTTAGAAAAATA
100890546 TAAAAAATAATAATTTAAAATTTAGAAAAATA
1 TAAAAAATAATAATTTAAAATTTAGAAAAATA
100890578 T
1 T
100890579 TTAAATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
31 17 0.55
32 14 0.45
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (32 bp):
TAAAAAATAATAATTTAAAATTTAGAAAAATA
Found at i:100890585 original size:31 final size:30
Alignment explanation
Indices: 100890509--100890600 Score: 85
Period size: 32 Copynumber: 2.8 Consensus size: 30
100890499 AAATATATTT
*
100890509 AATATTTAAAAAATAATAATTAAAATTTTAAAA
1 AATATTTAAATAATAAT--TTAAAA-TTTAAAA
**
100890542 AATATAAAAAATAATAATTTAAAATTTAGAAA
1 AATAT-TTAAATAATAATTTAAAATTTA-AAA
100890574 AATATTTAAATATATATATTATAAAAT
1 AATATTTAAATA-ATA-ATT-TAAAAT
100890601 ATTTCAAATA
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
31 9 0.18
32 17 0.35
33 8 0.16
34 15 0.31
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (30 bp):
AATATTTAAATAATAATTTAAAATTTAAAA
Found at i:100891727 original size:16 final size:16
Alignment explanation
Indices: 100891705--100891741 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
100891695 AATTTTGTTT
100891705 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
100891722 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
100891737 TAATA
1 TAATA
100891742 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:100891794 original size:15 final size:15
Alignment explanation
Indices: 100891774--100891830 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
100891764 ATTCAATATT
100891774 AATATTTTAATAATA
1 AATATTTTAATAATA
*
100891789 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
100891808 AATATATTAATAATA
1 AATATTTTAATAATA
100891823 AATATTTT
1 AATATTTT
100891831 GTAGTATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:100892685 original size:21 final size:22
Alignment explanation
Indices: 100892653--100892694 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
100892643 AAACATAATT
*
100892653 ATATTAAAAATATTATTAAATA
1 ATATTAAAAATATGATTAAATA
100892675 ATATT-AAAATATGATTAAAT
1 ATATTAAAAATATGATTAAAT
100892695 TATTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
ATATTAAAAATATGATTAAATA
Found at i:100892940 original size:15 final size:15
Alignment explanation
Indices: 100892920--100892949 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
100892910 TATTCTATTC
100892920 TAATGAACTAGACGT
1 TAATGAACTAGACGT
100892935 TAATGAACTAGACGT
1 TAATGAACTAGACGT
100892950 GGTATAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (15 bp):
TAATGAACTAGACGT
Found at i:100895470 original size:21 final size:21
Alignment explanation
Indices: 100895444--100895498 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
100895434 AACAGCGGTG
*
100895444 GCGGTGAGATTAGTTACTATA
1 GCGGTGAGATTAGGTACTATA
* *
100895465 GCGGTGAGATTAGGTATTGTA
1 GCGGTGAGATTAGGTACTATA
*
100895486 GCAGTGAGATTAG
1 GCGGTGAGATTAG
100895499 AAATAGCGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.07, G:0.35, T:0.31
Consensus pattern (21 bp):
GCGGTGAGATTAGGTACTATA
Found at i:100899000 original size:22 final size:22
Alignment explanation
Indices: 100898935--100899001 Score: 57
Period size: 22 Copynumber: 3.1 Consensus size: 22
100898925 ATATCCAAAC
* * *
100898935 AATAATA-ATAAATAGTAATAA
1 AATAATAGAAAAATAGAAACAA
* * *
100898956 CATAATAGTAAAAT-GATAGCAA
1 AATAATAGAAAAATAGA-AACAA
100898978 AATAATAGAAAAATAGAAACAA
1 AATAATAGAAAAATAGAAACAA
100899000 AA
1 AA
100899002 CAACAATTTC
Statistics
Matches: 34, Mismatches: 9, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
21 7 0.21
22 25 0.74
23 2 0.06
ACGTcount: A:0.66, C:0.04, G:0.09, T:0.21
Consensus pattern (22 bp):
AATAATAGAAAAATAGAAACAA
Found at i:100899136 original size:39 final size:39
Alignment explanation
Indices: 100899089--100899168 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
100899079 ATGGATCATT
*
100899089 TTTTTTTGCCTAAATTTATTTTTTGAACTTATATTTTTA
1 TTTTTTTGCCTAAACTTATTTTTTGAACTTATATTTTTA
*
100899128 TTTTTTTGCCTAAGCTTATTTTTTGAACTTATATTTTTA
1 TTTTTTTGCCTAAACTTATTTTTTGAACTTATATTTTTA
100899167 TT
1 TT
100899169 CAAATCTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.64
Consensus pattern (39 bp):
TTTTTTTGCCTAAACTTATTTTTTGAACTTATATTTTTA
Found at i:100902201 original size:20 final size:20
Alignment explanation
Indices: 100902165--100902204 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
100902155 TCCTATTGTT
100902165 GTTTTGTTACTGTTTGCTGC
1 GTTTTGTTACTGTTTGCTGC
*
100902185 GTTTCTGTTTCTG-TTGCTGC
1 GTTT-TGTTACTGTTTGCTGC
100902205 TTCCGTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.03, C:0.17, G:0.25, T:0.55
Consensus pattern (20 bp):
GTTTTGTTACTGTTTGCTGC
Found at i:100902681 original size:19 final size:19
Alignment explanation
Indices: 100902634--100902671 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
100902624 TGTTGTTTTC
*
100902634 TCATTATTTTGTTGCTATT
1 TCATTATTATGTTGCTATT
100902653 TCATTATTATGTTGCTATT
1 TCATTATTATGTTGCTATT
100902672 ATTTTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.11, G:0.11, T:0.61
Consensus pattern (19 bp):
TCATTATTATGTTGCTATT
Found at i:100907430 original size:14 final size:13
Alignment explanation
Indices: 100907411--100907444 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
100907401 CGGCTTAAGG
100907411 TTTTTTCTTTTCTT
1 TTTTTTCTTTT-TT
100907425 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
100907438 TTATTTT
1 TT-TTTT
100907445 ATTATTCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTCTTTTTT
Found at i:100918886 original size:44 final size:44
Alignment explanation
Indices: 100918735--100919303 Score: 735
Period size: 44 Copynumber: 13.2 Consensus size: 44
100918725 TCCTTGAAAT
*
100918735 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
*
100918779 AGAT----GATTTGGCATCTCTGTAGCGGC-GAAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAG-AGAGCAGATCGA
* *
100918819 AGAT----GATTTGGCATCTCTGTAGCGGCAGAAAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
* * *
100918859 AGATAACAGATTTGGCGTCTCTATAGCGGCGGAGAACAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
* * *
100918903 AGATAACAGATTTGGCATCTCTGTAGCAGCAGAGAGCAAATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
*
100918947 AGATAACAAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAAC-AGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
*
100918992 AGAT----GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
* * *
100919032 AAATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAACAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
* * *
100919076 AGATAACAGATTTGGCATCTCTGTAGCTGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
100919120 AGATAACAAGATTTGGCGTCTCTGTAGCGGC-GAAGAGCAGATCGA
1 AGATAAC-AGATTTGGCGTCTCTGTAGCGGCAG-AGAGCAGATCGA
*
100919165 AGAT----GATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
** * * *
100919205 AGATAACAGATTTGGCGTCTCCATAACGGC-GAAAAGCAAATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAG-AGAGCAGATCGA
100919249 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
*
100919293 AAATAACAGAT
1 AGATAACAGAT
100919304 CGGTGTTCCT
Statistics
Matches: 463, Mismatches: 42, Indels: 40
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.00
40 148 0.32
41 2 0.00
43 1 0.00
44 236 0.51
45 75 0.16
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (44 bp):
AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
Found at i:100919019 original size:173 final size:173
Alignment explanation
Indices: 100918735--100919300 Score: 910
Period size: 173 Copynumber: 3.3 Consensus size: 173
100918725 TCCTTGAAAT
* * *
100918735 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT-----GATTTGGCATCT
1 AGATAACAGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAAGATTTGGCGTCT
*
100918795 CTGTAGCGGCGAAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCAGAAAGCAGATCGAA
66 CTGTAGCGGCGAAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAA
100918860 GATAACAGATTTGGCGTCTCTATAGCGGCGGAGAACAGATCGA
131 GATAACAGATTTGGCGTCTCTATAGCGGCGGAGAACAGATCGA
* *
100918903 AGATAACAGATTTGGCATCTCTGTAGCAGCAGAGAGCAAATCGAAGATAACAAGATTTGGCGTCT
1 AGATAACAGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAAGATTTGGCGTCT
*
100918968 CTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAA
66 CTGTAGCGGCGAAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAA
* *
100919033 AATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAACAGATCGA
131 GATAACAGATTTGGCGTCTCTATAGCGGCGGAGAACAGATCGA
* *
100919076 AGATAACAGATTTGGCATCTCTGTAGCTGCGGAGAGCAGATCGAAGATAACAAGATTTGGCGTCT
1 AGATAACAGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAAGATTTGGCGTCT
* *
100919141 CTGTAGCGGCGAAGAGCAGATCGAAGATGATTTGGCGTCTCTGTAGCGGCAGAGAGTAGATCGAA
66 CTGTAGCGGCGAAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAA
* * * *
100919206 GATAACAGATTTGGCGTCTCCATAACGGC-GAAAAGCAAATCGA
131 GATAACAGATTTGGCGTCTCTATAGCGGCGGAGAA-CAGATCGA
* *
100919249 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAAATAACA
1 AGATAACAGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
100919301 GATCGGTGTT
Statistics
Matches: 367, Mismatches: 25, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
168 44 0.12
172 4 0.01
173 319 0.87
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (173 bp):
AGATAACAGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAAGATTTGGCGTCT
CTGTAGCGGCGAAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAA
GATAACAGATTTGGCGTCTCTATAGCGGCGGAGAACAGATCGA
Found at i:100920863 original size:24 final size:24
Alignment explanation
Indices: 100920826--100920888 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
100920816 TCATGTACAC
*
100920826 ATTATT-TATATTATTTTCA-TGATT
1 ATTATTGTAT-TTATTTTCACT-ACT
* *
100920850 ATTATTGTGTTTATTTTTACTACT
1 ATTATTGTATTTATTTTCACTACT
100920874 ATTATTGTATTTATT
1 ATTATTGTATTTATT
100920889 ATTAGTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 30 0.91
25 3 0.09
ACGTcount: A:0.25, C:0.05, G:0.06, T:0.63
Consensus pattern (24 bp):
ATTATTGTATTTATTTTCACTACT
Found at i:100920903 original size:24 final size:24
Alignment explanation
Indices: 100920847--100920903 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
100920837 TATTTTCATG
* *
100920847 ATTATTATTGTGTTTATTTTTACT
1 ATTATTATTGTATTTATTATTACT
* *
100920871 ACTATTATTGTATTTATTATTAGT
1 ATTATTATTGTATTTATTATTACT
*
100920895 ATTAGTATT
1 ATTATTATT
100920904 ATAATTACTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (24 bp):
ATTATTATTGTATTTATTATTACT
Found at i:100921029 original size:12 final size:12
Alignment explanation
Indices: 100921012--100921041 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
100921002 TATTTTTAAC
100921012 ATATATATGTAT
1 ATATATATGTAT
100921024 ATATATATGTAT
1 ATATATATGTAT
*
100921036 GTATAT
1 ATATAT
100921042 TTATGAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (12 bp):
ATATATATGTAT
Found at i:100921125 original size:23 final size:23
Alignment explanation
Indices: 100921099--100921175 Score: 86
Period size: 23 Copynumber: 3.2 Consensus size: 23
100921089 AATGTGTATG
100921099 TATTATATATATTTTTA-ATACTA
1 TATTATATATATTTTTATATA-TA
100921122 TATTATGTATATATTATATTATATATA
1 TATTA--TATATATT-T-TTATATATA
100921149 TAGTTAT-TATATTTTTATATATA
1 TA-TTATATATATTTTTATATATA
100921172 TATT
1 TATT
100921176 TTAATATCAC
Statistics
Matches: 48, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
22 2 0.04
23 16 0.33
24 1 0.02
25 14 0.29
26 2 0.04
27 7 0.15
28 6 0.12
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (23 bp):
TATTATATATATTTTTATATATA
Found at i:100921139 original size:16 final size:16
Alignment explanation
Indices: 100921095--100921155 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
100921085 TTCTAATGTG
100921095 TATGTAT-TATATATAT
1 TATGTATATAT-TATAT
* *
100921111 T-TTTA-ATACTATAT
1 TATGTATATATTATAT
100921125 TATGTATATATTATAT
1 TATGTATATATTATAT
*
100921141 TATATATATAGTTAT
1 TATGTATATA-TTAT
100921156 TATATTTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
14 6 0.17
15 8 0.22
16 18 0.50
17 4 0.11
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.56
Consensus pattern (16 bp):
TATGTATATATTATAT
Found at i:100921148 original size:25 final size:23
Alignment explanation
Indices: 100921104--100921172 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 23
100921094 GTATGTATTA
100921104 TATATATTTTTAATACTATATTA-T
1 TATATATTTTT-ATA-TATATTAGT
100921128 GTATATATTATATTATATATA-TAGT
1 -TATATATT-T-TTATATATATTAGT
100921153 TATTATATTTTTATATATAT
1 TA-TATATTTTTATATATAT
100921173 ATTTTAATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
23 9 0.23
24 5 0.13
25 19 0.49
26 4 0.10
27 2 0.05
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (23 bp):
TATATATTTTTATATATATTAGT
Found at i:100921386 original size:3 final size:3
Alignment explanation
Indices: 100921378--100921422 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
100921368 TTCTACGTTG
*
100921378 TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
100921423 CATTGTTTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:100921951 original size:133 final size:133
Alignment explanation
Indices: 100921725--100921965 Score: 365
Period size: 133 Copynumber: 1.8 Consensus size: 133
100921715 AACGGAGACG
* * *
100921725 ATGTTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTTGTTTGC
1 ATGTTCGACGTTCAGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGC
* * * * *
100921790 CCAAAATAATCGGATGTCTCTTTAGAATTTCGTTCATGTTTTCTAAAAACTTTTTAAAAACGAAG
66 CCAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTCTAAAAACTTTTTAAAAACGAAG
100921855 GAA
131 GAA
* * *
100921858 ATGTTCGACGTTCGGCAATTCGGGGAATCGTGTCCTATCGTGCTGGGTTGCAATTTCTCGTTTGT
1 ATGTTCGACGTTCAGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGC
* *
100921923 GCAAAATAATCGAATATCCCTTTGGAATTTCATTCACGTTTTC
66 CCAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTC
100921966 CAAAGCGAGA
Statistics
Matches: 95, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
133 95 1.00
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (133 bp):
ATGTTCGACGTTCAGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGC
CCAAAATAATCGAATATCCCTTTAGAATTTCATTCACGTTTTCTAAAAACTTTTTAAAAACGAAG
GAA
Found at i:100937688 original size:29 final size:28
Alignment explanation
Indices: 100937656--100937750 Score: 95
Period size: 29 Copynumber: 3.2 Consensus size: 28
100937646 ATTTATTTCG
100937656 TTATTCTAATACTATTATTATTTATCTATT
1 TTATT-TAATACTATTATTATTT-TCTATT
*
100937686 TATATTT-CTACTATTATTATATTTCTATT
1 T-TATTTAATACTATTATTAT-TTTCTATT
*
100937715 TCTATTTATATACTAATATTATTTTC-ATT
1 T-TATTTA-ATACTATTATTATTTTCTATT
100937744 ATTATTT
1 -TTATTT
100937751 TCTTATATAT
Statistics
Matches: 56, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
29 32 0.57
30 9 0.16
31 15 0.27
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.61
Consensus pattern (28 bp):
TTATTTAATACTATTATTATTTTCTATT
Found at i:100937903 original size:25 final size:25
Alignment explanation
Indices: 100937856--100937904 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
100937846 CTCATTTCAA
*
100937856 ATTTTCATACATTATTTTCTTTAAT
1 ATTTTCATACATTATTATCTTTAAT
*
100937881 ATTTTCATATATTATGTAT-TTTAA
1 ATTTTCATACATTAT-TATCTTTAA
100937905 ACCTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (25 bp):
ATTTTCATACATTATTATCTTTAAT
Found at i:100938225 original size:17 final size:18
Alignment explanation
Indices: 100938203--100938236 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
100938193 AAAAGGTCGT
*
100938203 GTTTTAACATCG-TTTAA
1 GTTTTAAAATCGATTTAA
100938220 GTTTTAAAATCGATTTA
1 GTTTTAAAATCGATTTA
100938237 TTCAAAAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.47
Consensus pattern (18 bp):
GTTTTAAAATCGATTTAA
Found at i:100950436 original size:24 final size:24
Alignment explanation
Indices: 100950409--100950455 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
100950399 GATGGAAAAC
*
100950409 CAGAAACTAAACAAGAATCTAAAT
1 CAGAAACCAAACAAGAATCTAAAT
* *
100950433 CAGAAGCCAAGCAAGAATCTAAA
1 CAGAAACCAAACAAGAATCTAAA
100950456 GAAGTTGAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.55, C:0.19, G:0.13, T:0.13
Consensus pattern (24 bp):
CAGAAACCAAACAAGAATCTAAAT
Found at i:100956497 original size:31 final size:31
Alignment explanation
Indices: 100956408--100956501 Score: 115
Period size: 31 Copynumber: 3.2 Consensus size: 31
100956398 TTAATATAAC
* *
100956408 ATTTGGTACTTGAGCTTGACATTTTTTCCTA
1 ATTTGGTACCTGAACTTGACATTTTTTCCTA
* * *
100956439 ATTTAGTACCTAAACTT----TTTTTACCTA
1 ATTTGGTACCTGAACTTGACATTTTTTCCTA
100956466 ATTTGGTACCTGAACTTGACATTTTTTCCTA
1 ATTTGGTACCTGAACTTGACATTTTTTCCTA
100956497 ATTTG
1 ATTTG
100956502 ATACTTATAT
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
27 24 0.47
31 27 0.53
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTTGGTACCTGAACTTGACATTTTTTCCTA
Found at i:100956534 original size:59 final size:60
Alignment explanation
Indices: 100956408--100956669 Score: 306
Period size: 59 Copynumber: 4.4 Consensus size: 60
100956398 TTAATATAAC
* * *
100956408 ATTTGGTACTTGAGCTTGACATTTTTTCCTAATTT-AGTACCTAAACTTTTTTT-A-CCTA
1 ATTTGGTACCTGAACTTGACATTTTTTCCTAATTTGA-TACCTAAACTTTTTTTGAGCCCA
* *
100956466 ATTTGGTACCTGAACTTGACATTTTTTCCTAATTTGATACTTATA-TTTTTTTGAGCCCA
1 ATTTGGTACCTGAACTTGACATTTTTTCCTAATTTGATACCTAAACTTTTTTTGAGCCCA
* * * *
100956525 ATTTAGTACCTAAACTTAACACTTTTTT--TAAATTTAATACCTAAACTTTTTTTGAGCCCA
1 ATTTGGTACCTGAACTTGACA-TTTTTTCCT-AATTTGATACCTAAACTTTTTTTGAGCCCA
* * *
100956585 ATTTGGCACCTGAACTTGACACTTTTTCCT-ATTTGATACCTAAACCTTTTTTG-GACCCA
1 ATTTGGTACCTGAACTTGACATTTTTTCCTAATTTGATACCTAAACTTTTTTTGAG-CCCA
* *
100956644 ATTTGGTACCTAAACTTGGCATTTTT
1 ATTTGGTACCTGAACTTGACATTTTT
100956670 GTTTTCTAAT
Statistics
Matches: 173, Mismatches: 22, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
57 7 0.04
58 42 0.24
59 86 0.50
60 37 0.21
61 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.10, T:0.45
Consensus pattern (60 bp):
ATTTGGTACCTGAACTTGACATTTTTTCCTAATTTGATACCTAAACTTTTTTTGAGCCCA
Found at i:100956644 original size:119 final size:117
Alignment explanation
Indices: 100956438--100956660 Score: 324
Period size: 119 Copynumber: 1.9 Consensus size: 117
100956428 ATTTTTTCCT
* * * *
100956438 AATTTAGTACCTAAACTTTTTTTACCTAATTTGGTACCTGAACTTGACATTTTTTCCTAATTTGA
1 AATTTAATACCTAAACTTTTTTTACCCAATTTGGCACCTGAACTTGACACTTTTTCCTAATTTGA
* * *
100956503 TACTTATATTTTTTTGAGCCCAATTTAGTACCTAAACTTAACACTTTTTTTA
66 TACCTAAATTTTTTGGAGCCCAATTTAGTACCTAAACTTAACACTTTTTTTA
100956555 AATTTAATACCTAAACTTTTTTTGAGCCCAATTTGGCACCTGAACTTGACACTTTTTCCT-ATTT
1 AATTTAATACCTAAACTTTTTTT-A-CCCAATTTGGCACCTGAACTTGACACTTTTTCCTAATTT
*
100956619 GATACCTAAACCTTTTTTGGA-CCCAATTTGGTACCTAAACTT
64 GATACCTAAA--TTTTTTGGAGCCCAATTTAGTACCTAAACTT
100956661 GGCATTTTTG
Statistics
Matches: 94, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
117 22 0.23
118 13 0.14
119 51 0.54
120 8 0.09
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.43
Consensus pattern (117 bp):
AATTTAATACCTAAACTTTTTTTACCCAATTTGGCACCTGAACTTGACACTTTTTCCTAATTTGA
TACCTAAATTTTTTGGAGCCCAATTTAGTACCTAAACTTAACACTTTTTTTA
Found at i:100957982 original size:20 final size:19
Alignment explanation
Indices: 100957935--100957984 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
100957925 TTTGAGTTAA
* *
100957935 TCGAATCAAGTTATTCAAT
1 TCGAATCGAGTTAATCAAT
*
100957954 TTG-ATCGAGTTAAATCAAT
1 TCGAATCGAGTT-AATCAAT
100957973 TCGAATCGAGTT
1 TCGAATCGAGTT
100957985 GAATTCTACT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 7 0.28
19 10 0.40
20 8 0.32
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (19 bp):
TCGAATCGAGTTAATCAAT
Done.