Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 309 of 352
Found at i:100958159 original size:24 final size:23
Alignment explanation
Indices: 100958121--100958188 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 23
100958111 TTAATTTCAA
* *
100958121 AATATTTATACAAATTTTAAAATT
1 AATATTTAAAAAAATTTTAAAA-T
* *
100958145 TATATTTAAAAAAATTCT-AAAT
1 AATATTTAAAAAAATTTTAAAAT
* *
100958167 AATATATAAAGAAATTTTAAAA
1 AATATTTAAAAAAATTTTAAAA
100958189 ATTTTCTAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
22 15 0.43
23 6 0.17
24 14 0.40
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (23 bp):
AATATTTAAAAAAATTTTAAAAT
Found at i:100961528 original size:40 final size:40
Alignment explanation
Indices: 100961473--100961552 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
100961463 CAACTTGAAT
*
100961473 CTTCTCTAGATAAAATACTAATTCCCAATTCTAGAAAGAA
1 CTTCTCTAGATAAAATACTAATTCCCAATACTAGAAAGAA
*
100961513 CTTCTCTAGATAAAATACTAATTTCCAATACTAGAAAGAA
1 CTTCTCTAGATAAAATACTAATTCCCAATACTAGAAAGAA
100961553 TCAAACAAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (40 bp):
CTTCTCTAGATAAAATACTAATTCCCAATACTAGAAAGAA
Found at i:100962620 original size:78 final size:78
Alignment explanation
Indices: 100962489--100962641 Score: 243
Period size: 78 Copynumber: 2.0 Consensus size: 78
100962479 ATAAGTGTCG
* * * * *
100962489 ATTTCAATTATGGAATAAAGTTTAGGTACTCGTTTCGACCAAAAAAATGTTTAGGTACATAACTC
1 ATTTCAATTATAGAATAAAGTTTAGGCACCCATTTCGACCAAAAAAATATTTAGGTACATAACTC
100962554 AAACAAATGGTCA
66 AAACAAATGGTCA
* *
100962567 ATTTCAATTATAGAATAAAGTTTAGGCACCCATTTTGACCAAAAAAATATTTAGGTACCTAACTC
1 ATTTCAATTATAGAATAAAGTTTAGGCACCCATTTCGACCAAAAAAATATTTAGGTACATAACTC
100962632 AAACAAATGG
66 AAACAAATGG
100962642 CATAGTTTAA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 68 1.00
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (78 bp):
ATTTCAATTATAGAATAAAGTTTAGGCACCCATTTCGACCAAAAAAATATTTAGGTACATAACTC
AAACAAATGGTCA
Found at i:100965670 original size:25 final size:25
Alignment explanation
Indices: 100965639--100965686 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
100965629 AAGTTGCTGT
*
100965639 GCAAAATTTGTTTCTAATTTACTGG
1 GCAAAATCTGTTTCTAATTTACTGG
100965664 GCAAAATCTGTTTCTAATTTACT
1 GCAAAATCTGTTTCTAATTTACT
100965687 TTGAAGTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (25 bp):
GCAAAATCTGTTTCTAATTTACTGG
Found at i:100971387 original size:25 final size:24
Alignment explanation
Indices: 100971345--100971392 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
100971335 TTGTAAAGAG
* *
100971345 AAAATTTTCTAAATATATTATTTCA
1 AAAAATTTCTAAAGATATT-TTTCA
*
100971370 AAAAATTTCTAGAGATATTTTTC
1 AAAAATTTCTAAAGATATTTTTC
100971393 TTATTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (24 bp):
AAAAATTTCTAAAGATATTTTTCA
Found at i:100973673 original size:10 final size:10
Alignment explanation
Indices: 100973658--100973706 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
100973648 AATTTTAGCT
100973658 TTTATCTTTA
1 TTTATCTTTA
*
100973668 TTTATCCTTA
1 TTTATCTTTA
*
100973678 ATTATCTTTA
1 TTTATCTTTA
100973688 TTTAT-TTGTA
1 TTTATCTT-TA
100973698 TTTATCTTT
1 TTTATCTTT
100973707 TAGAATTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 2 0.06
10 29 0.88
11 2 0.06
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:100975589 original size:13 final size:14
Alignment explanation
Indices: 100975573--100975608 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
100975563 CAATCTCATA
100975573 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
100975586 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
100975599 TCTC-ATTTCA
1 TCTCAATTTCA
100975609 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:100975598 original size:18 final size:19
Alignment explanation
Indices: 100975560--100975600 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
100975550 TGGTTCATGT
100975560 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
100975579 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
100975597 TTTC
1 TTTC
100975601 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:100976123 original size:18 final size:19
Alignment explanation
Indices: 100976097--100976135 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
100976087 TTTCAATTCA
100976097 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
100976116 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
100976134 AT
1 AT
100976136 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:100977461 original size:5 final size:5
Alignment explanation
Indices: 100977451--100977512 Score: 72
Period size: 5 Copynumber: 12.0 Consensus size: 5
100977441 TTACTTATTT
*
100977451 ATATA ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA
1 ATATA ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA
*
100977499 ATTTA ATAT- ATATA
1 ATATA ATATA ATATA
100977513 TTTTAATACA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
4 4 0.08
5 34 0.69
6 7 0.14
7 4 0.08
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:100977471 original size:12 final size:12
Alignment explanation
Indices: 100977456--100977510 Score: 67
Period size: 12 Copynumber: 4.4 Consensus size: 12
100977446 TATTTATATA
100977456 ATATAATATAAT
1 ATATAATATAAT
100977468 ATATAATATAATAT
1 ATATAATAT-A-AT
100977482 ACTATAATATAAT
1 A-TATAATATAAT
*
100977495 A-ATAATTTAAT
1 ATATAATATAAT
100977506 ATATA
1 ATATA
100977511 TATTTTAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 12 0.32
13 4 0.11
14 4 0.11
15 8 0.21
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (12 bp):
ATATAATATAAT
Found at i:100977476 original size:22 final size:21
Alignment explanation
Indices: 100977451--100977513 Score: 83
Period size: 22 Copynumber: 3.0 Consensus size: 21
100977441 TTACTTATTT
100977451 ATATAATATAATATAATATATA
1 ATATAATATAATAT-ATATATA
*
100977473 ATATAATATACTATA-ATATA
1 ATATAATATAATATATATATA
*
100977493 ATAATAATTTAATATATATAT
1 AT-ATAATATAATATATATAT
100977514 TTTAATACAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 7 0.19
21 12 0.33
22 17 0.47
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
ATATAATATAATATATATATA
Found at i:100979321 original size:16 final size:16
Alignment explanation
Indices: 100979275--100979321 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
100979265 GTTTGGCTCA
*
100979275 TTGTAATGGAATAGGG
1 TTGTAATGGAATAGAG
* * *
100979291 TTGGAATTGAGTAGAG
1 TTGTAATGGAATAGAG
100979307 TTGTAATGGAATAGA
1 TTGTAATGGAATAGA
100979322 ACTGTAATCA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.32
Consensus pattern (16 bp):
TTGTAATGGAATAGAG
Found at i:100979362 original size:46 final size:44
Alignment explanation
Indices: 100979311--100979399 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
100979301 GTAGAGTTGT
100979311 AATGGAATAGAACTGTAATCAATAATTCAAT-TGTTTGGTTAAATGA
1 AATGGAATAGAACTGTAAT-AA-AATTC-ATGTGTTTGGTTAAATGA
* * *
100979357 AATGGAATAGAGCTGTAATAAAATTCTTGTGTTTGGTTGAATG
1 AATGGAATAGAACTGTAATAAAATTCATGTGTTTGGTTAAATG
100979400 GAATAGATGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 1 0.03
44 18 0.46
45 2 0.05
46 18 0.46
ACGTcount: A:0.37, C:0.06, G:0.21, T:0.36
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAAAATTCATGTGTTTGGTTAAATGA
Found at i:100979605 original size:12 final size:11
Alignment explanation
Indices: 100979573--100979661 Score: 57
Period size: 12 Copynumber: 8.2 Consensus size: 11
100979563 ATTATTATTA
100979573 AATAA-AATTT
1 AATAATAATTT
100979583 AATAA-AA--T
1 AATAATAATTT
100979591 AATATATAATTT
1 AATA-ATAATTT
* *
100979603 AATAACATTCTT
1 AATAATAAT-TT
100979615 AAT-ATAATTATT
1 AATAATAA-T-TT
100979627 AATAAT-ATTT
1 AATAATAATTT
100979637 AATAATAATTTT
1 AATAATAA-TTT
100979649 AAT-ATAATATT
1 AATAATAAT-TT
100979660 AA
1 AA
100979662 CATTTTATTT
Statistics
Matches: 64, Mismatches: 5, Indels: 19
0.73 0.06 0.22
Matches are distributed among these distances:
8 5 0.08
9 1 0.02
10 18 0.28
11 15 0.23
12 23 0.36
13 2 0.03
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (11 bp):
AATAATAATTT
Found at i:100979651 original size:34 final size:35
Alignment explanation
Indices: 100979590--100979661 Score: 96
Period size: 34 Copynumber: 2.1 Consensus size: 35
100979580 TTTAATAAAA
*
100979590 TAATATATAATTTAATAACATTCTTAATATAATTAT
1 TAATATATAATTTAATAAAATTCTTAATATAA-TAT
100979626 TAATA-AT-ATTTAATAATAATT-TTAATATAATAT
1 TAATATATAATTTAATAA-AATTCTTAATATAATAT
100979659 TAA
1 TAA
100979662 CATTTTATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
33 6 0.18
34 18 0.53
35 5 0.15
36 5 0.15
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (35 bp):
TAATATATAATTTAATAAAATTCTTAATATAATAT
Found at i:100981444 original size:35 final size:35
Alignment explanation
Indices: 100981350--100981448 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 35
100981340 GGAATGTTGG
*
100981350 GGGTCTATACCTAACATTGAGATTTCTACTTGTAT
1 GGGTCTGTACCTAACATTGAGATTTCTACTTGTAT
*
100981385 AGGT-TG---C-AAGC--TGAGATTTCTACTTGTAT
1 GGGTCTGTACCTAA-CATTGAGATTTCTACTTGTAT
*
100981414 GGGTCTGTACCTAACATTGAGATTTTTACTTGTAT
1 GGGTCTGTACCTAACATTGAGATTTCTACTTGTAT
100981449 AGGTACCAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
29 21 0.40
30 4 0.08
31 2 0.04
33 2 0.04
34 3 0.06
35 20 0.38
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.40
Consensus pattern (35 bp):
GGGTCTGTACCTAACATTGAGATTTCTACTTGTAT
Found at i:100983235 original size:5 final size:5
Alignment explanation
Indices: 100983221--100983287 Score: 80
Period size: 5 Copynumber: 13.4 Consensus size: 5
100983211 TTAGATAAAC
* * * * * *
100983221 ATCTA CTCTA ATCTA TTCTC TTCTA ATCTA ATCTA GTCTA ATCTA GTCTA
1 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA
100983271 ATCTA ATCTA ATCTA AT
1 ATCTA ATCTA ATCTA AT
100983288 GATGGTAGCT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
5 52 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.43
Consensus pattern (5 bp):
ATCTA
Found at i:100986093 original size:32 final size:32
Alignment explanation
Indices: 100986057--100986179 Score: 201
Period size: 32 Copynumber: 3.8 Consensus size: 32
100986047 ACTATACTAT
*
100986057 TTTTTTATATGTAAAACTAATGTATGATGTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
** *
100986089 TTTTTTATATGCCAAACTAATGTATGATCAAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
*
100986121 TTTTTTATATGTAAATCTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
100986153 TTTTTTATATGTAAAACTAATGTATGA
1 TTTTTTATATGTAAAACTAATGTATGA
100986180 GATTTTTTAT
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 82 1.00
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (32 bp):
TTTTTTATATGTAAAACTAATGTATGATCTAC
Found at i:100987816 original size:3 final size:3
Alignment explanation
Indices: 100987802--100987831 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
100987792 AAACAAATAC
100987802 AAT AAT ATAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AA
100987832 CATAGTAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:100988238 original size:21 final size:21
Alignment explanation
Indices: 100988214--100988256 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
100988204 TATAATGTAA
100988214 ATAA-ATAAATATATAAGATAT
1 ATAAGATAAA-ATATAAGATAT
* *
100988235 ATAAGTTAAAATATAATATAT
1 ATAAGATAAAATATAAGATAT
100988256 A
1 A
100988257 ATAATTTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (21 bp):
ATAAGATAAAATATAAGATAT
Found at i:100988299 original size:12 final size:12
Alignment explanation
Indices: 100988277--100988310 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
100988267 AATTTTGAAA
100988277 ATATA-AATAAT
1 ATATATAATAAT
100988288 ATATATAATAAT
1 ATATATAATAAT
100988300 ATATATAATAA
1 ATATATAATAA
100988311 ATTAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.23
12 17 0.77
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
ATATATAATAAT
Found at i:100988662 original size:17 final size:18
Alignment explanation
Indices: 100988609--100988680 Score: 103
Period size: 19 Copynumber: 3.9 Consensus size: 18
100988599 AATCATATCT
100988609 TCTAAGATTGTATATCATA
1 TCTAAGATTG-ATATCATA
100988628 TCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATA
100988646 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
100988663 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
100988681 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
17 16 0.33
18 16 0.33
19 17 0.35
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGATATCATA
Found at i:100988667 original size:35 final size:37
Alignment explanation
Indices: 100988602--100988680 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
100988592 ATTACAAAAT
100988602 CATATC-T-TCTAAGATTGTATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
100988638 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
100988673 CATATCAT
1 CATATCAT
100988681 TGAAGATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:100988678 original size:14 final size:15
Alignment explanation
Indices: 100988623--100988678 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
100988613 AGATTGTATA
100988623 TCATATCTAAGATTG
1 TCATATCTAAGATTG
100988638 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
100988656 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
100988673 -CATATC
1 TCATATC
100988679 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:100989422 original size:122 final size:121
Alignment explanation
Indices: 100989287--100989510 Score: 394
Period size: 122 Copynumber: 1.8 Consensus size: 121
100989277 GGAGTCTGTT
* * **
100989287 TGAGAACATCTGAGAGTCAAATCTACTATTTCCTCGATTTGTTTCTTGTAAACACAAGAATGTCA
1 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
100989352 AATCATCTTGGATCTGGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATGTGTC
66 AATCATCTTGGATCT-GCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATGTGTC
*
100989409 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
100989474 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAG
66 AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAG
100989511 TTTATAAATC
Statistics
Matches: 97, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
121 22 0.23
122 75 0.77
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (121 bp):
TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
AATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCCATGTGTC
Found at i:100990248 original size:11 final size:11
Alignment explanation
Indices: 100990148--100990249 Score: 59
Period size: 11 Copynumber: 8.8 Consensus size: 11
100990138 AAAAAAATAT
100990148 TATATAATAAA
1 TATATAATAAA
*
100990159 -ATGTAATATAAA
1 TATAT-A-ATAAA
*
100990171 TATATAAGAAA
1 TATATAATAAA
100990182 TATAATAGATATAA
1 TAT-ATA-ATA-AA
*
100990196 TATAAAATAACA
1 TATATAATAA-A
*
100990208 TGTA-AA-ACAA
1 TATATAATA-AA
100990218 TATATATATAAA
1 TATATA-ATAAA
100990230 TA-ATTAATAAA
1 TATA-TAATAAA
100990241 TATATAATA
1 TATATAATA
100990250 TATGTGAGAA
Statistics
Matches: 71, Mismatches: 7, Indels: 26
0.68 0.07 0.25
Matches are distributed among these distances:
10 8 0.11
11 26 0.37
12 24 0.34
13 8 0.11
14 5 0.07
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (11 bp):
TATATAATAAA
Found at i:100990275 original size:35 final size:35
Alignment explanation
Indices: 100990238--100990316 Score: 90
Period size: 33 Copynumber: 2.3 Consensus size: 35
100990228 AATAATTAAT
100990238 AAATATATAATATATGTGAGAATATAATAATATATAA
1 AAATA-ATAATA-ATGTGAGAATATAATAATATATAA
* *
100990275 AAATAATAATAATTTGAGGA-A-AATAATATATAA
1 AAATAATAATAATGTGAGAATATAATAATATATAA
* *
100990308 TAGTAATAA
1 AAATAATAA
100990317 AAATAACACT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
33 19 0.50
34 1 0.03
35 7 0.18
36 6 0.16
37 5 0.13
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (35 bp):
AAATAATAATAATGTGAGAATATAATAATATATAA
Found at i:100990301 original size:36 final size:36
Alignment explanation
Indices: 100990238--100990306 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
100990228 AATAATTAAT
*
100990238 AAATATATAATATATGTGAGAATATAATAATATATAA
1 AAATATATAATATATGTGAGAAAATAAT-ATATATAA
*
100990275 AAATA-ATAATA-ATTTGAGGAAAATAATATATA
1 AAATATATAATATATGTGA-GAAAATAATATATA
100990307 ATAGTAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 10 0.34
36 14 0.48
37 5 0.17
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (36 bp):
AAATATATAATATATGTGAGAAAATAATATATATAA
Found at i:100992050 original size:83 final size:83
Alignment explanation
Indices: 100991827--100992520 Score: 1174
Period size: 83 Copynumber: 8.3 Consensus size: 83
100991817 TTCGATTTGT
* * * * *
100991827 AAGGATGTCAAATCATCTTGAGTCTGTCTGAAAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
100991892 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* *
100991910 AAGGATGCTTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTG
1 AAGGATGC-CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCG
100991975 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
*
100991994 AAGGATGCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
100992059 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* *
100992077 AATGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTTATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
100992142 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* *
100992160 AAGGATGTCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCTA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
100992225 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
100992243 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
100992308 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* *
100992326 AAGGATGCCAAACCATCCTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
100992391 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
100992409 AAGGATGCCAAACCATCTTGAGTCTGTTGGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
*
100992474 TTTGTTCCTTGTAAACAC
66 TTTGTTCCTTGTAAGCAC
* ** *
100992492 AAGAATATCAAATCATCTTG-GATCTGTTT
1 AAGGATGCCAAACCATCTTGAG-TCTGTTT
100992521 CAATATAAAC
Statistics
Matches: 580, Mismatches: 29, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
82 1 0.00
83 503 0.87
84 76 0.13
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:100992655 original size:119 final size:119
Alignment explanation
Indices: 100992438--100992666 Score: 325
Period size: 119 Copynumber: 1.9 Consensus size: 119
100992428 GAGTCTGTTG
* * *
100992438 GAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATATCAA
1 GAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
* *
100992503 ATCATCTTGGATCTGTTTCAATATAAACATCTGAATGT-TAGATCTACTATATTT
66 ATCATCTTGGATCTGCTTCAACATAAACATCTGAA-GTCTAGATCTACTATATTT
* * * *
100992557 GAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACATAAGAATACCAA
1 GAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
* * **
100992622 ATTATCTTGGATCTGCTTCAGCATAAATGTCTGAAGTCTAGATCT
66 ATCATCTTGGATCTGCTTCAACATAAACATCTGAAGTCTAGATCT
100992667 GCTGTCTTCA
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
118 2 0.02
119 94 0.98
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.35
Consensus pattern (119 bp):
GAGAACATCTGAGAGTCAAATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAA
ATCATCTTGGATCTGCTTCAACATAAACATCTGAAGTCTAGATCTACTATATTT
Found at i:101004621 original size:20 final size:20
Alignment explanation
Indices: 101004593--101004631 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
101004583 TTAATAATAA
* *
101004593 TAATAATAATATATATAATG
1 TAATAATAAAAAATATAATG
*
101004613 TAATCATAAAAAATATAAT
1 TAATAATAAAAAATATAAT
101004632 TGGCGATACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
TAATAATAAAAAATATAATG
Found at i:101007460 original size:21 final size:21
Alignment explanation
Indices: 101007436--101007486 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
101007426 CATTGTTTCT
* * *
101007436 AATCTCACCGTTACATTATCC
1 AATCTCACCGCTACAATAACC
*
101007457 AATCTCACCGCTACAATAACT
1 AATCTCACCGCTACAATAACC
101007478 AATCTCACC
1 AATCTCACC
101007487 ACCACCGCTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.35, G:0.04, T:0.27
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:101010987 original size:16 final size:16
Alignment explanation
Indices: 101010966--101011009 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
101010956 TTAAAAATTC
101010966 TATATAAAAATTA-AT
1 TATATAAAAATTATAT
*
101010981 TGTTATAAAAA-TATAT
1 T-ATATAAAAATTATAT
101010997 TATATAAAAATTA
1 TATATAAAAATTA
101011010 CTAATTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (16 bp):
TATATAAAAATTATAT
Found at i:101013988 original size:356 final size:356
Alignment explanation
Indices: 101013335--101014053 Score: 1402
Period size: 356 Copynumber: 2.0 Consensus size: 356
101013325 ACGTTATAGA
101013335 TCTGTTTTTAGCAACTCATAGAACAACTTGTTTTGAAATGTAAAACATTTCACATCATCAGGTGA
1 TCTGTTTTTAGCAACTCATAGAACAACTTGTTTTGAAATGTAAAACATTTCACATCATCAGGTGA
*
101013400 TTATATCCTAACGTTTGCAATTCAGATAGCCATATCTTATAGCAAGTTTGTGTCATCTGTTTTTG
66 TTATATCCTAACATTTGCAATTCAGATAGCCATATCTTATAGCAAGTTTGTGTCATCTGTTTTTG
101013465 TTGCATCAATTCTTCTTCTAATACCAATCATGTGCTATAAGATAGCTATCTGAATTTCCAATGAA
131 TTGCATCAATTCTTCTTCTAATACCAATCATGTGCTATAAGATAGCTATCTGAATTTCCAATGAA
101013530 CTATTAGGATTTTAGAAGTTTATGAAACTTAACCCAAAATGTGTACAAAATTTTGACCAGTTCGG
196 CTATTAGGATTTTAGAAGTTTATGAAACTTAACCCAAAATGTGTACAAAATTTTGACCAGTTCGG
101013595 CTGGGACAAAGCAAAATGCACAAATATGAAAATTACTGATTGCTTTTATCAGTCTTACCCACTTG
261 CTGGGACAAAGCAAAATGCACAAATATGAAAATTACTGATTGCTTTTATCAGTCTTACCCACTTG
*
101013660 CTAAATGCCATTGTCACGATAAGCAAAAATG
326 CTAAATGCCATTGTCACAATAAGCAAAAATG
101013691 TCTGTTTTTAGCAACTCATAGAACAACTTGTTTTGAAATGTAAAACATTTCACATCATCAGGTGA
1 TCTGTTTTTAGCAACTCATAGAACAACTTGTTTTGAAATGTAAAACATTTCACATCATCAGGTGA
*
101013756 TTATATCCTAACATTTGCAATTCGGATAGCCATATCTTATAGCAAGTTTGTGTCATCTGTTTTTG
66 TTATATCCTAACATTTGCAATTCAGATAGCCATATCTTATAGCAAGTTTGTGTCATCTGTTTTTG
*
101013821 TTGCATCAATTCTTCTTCTAATACCAATCATTTGCTATAAGATAGCTATCTGAATTTCCAATGAA
131 TTGCATCAATTCTTCTTCTAATACCAATCATGTGCTATAAGATAGCTATCTGAATTTCCAATGAA
101013886 CTATTAGGATTTTAGAAGTTTATGAAACTTAACCCAAAATGTGTACAAAATTTTGACCAGTTCGG
196 CTATTAGGATTTTAGAAGTTTATGAAACTTAACCCAAAATGTGTACAAAATTTTGACCAGTTCGG
101013951 CTGGGACAAAGCAAAATGCACAAATATGAAAATTACTGATTGCTTTTATCAGTCTTACCCACTTG
261 CTGGGACAAAGCAAAATGCACAAATATGAAAATTACTGATTGCTTTTATCAGTCTTACCCACTTG
101014016 CTAAATGCCATTGTCACAATAAGCAAAAATG
326 CTAAATGCCATTGTCACAATAAGCAAAAATG
101014047 TCTGTTT
1 TCTGTTT
101014054 GATCTTTAAT
Statistics
Matches: 359, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
356 359 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (356 bp):
TCTGTTTTTAGCAACTCATAGAACAACTTGTTTTGAAATGTAAAACATTTCACATCATCAGGTGA
TTATATCCTAACATTTGCAATTCAGATAGCCATATCTTATAGCAAGTTTGTGTCATCTGTTTTTG
TTGCATCAATTCTTCTTCTAATACCAATCATGTGCTATAAGATAGCTATCTGAATTTCCAATGAA
CTATTAGGATTTTAGAAGTTTATGAAACTTAACCCAAAATGTGTACAAAATTTTGACCAGTTCGG
CTGGGACAAAGCAAAATGCACAAATATGAAAATTACTGATTGCTTTTATCAGTCTTACCCACTTG
CTAAATGCCATTGTCACAATAAGCAAAAATG
Found at i:101022398 original size:37 final size:37
Alignment explanation
Indices: 101022347--101022421 Score: 116
Period size: 37 Copynumber: 2.0 Consensus size: 37
101022337 TGTGGTGGAT
*
101022347 ACAAGCTTGAAAATTAAGTTC-AATAAAATTAAGTCAA
1 ACAAGCTTGAAAATTAAG-TCGAATAAAAATAAGTCAA
*
101022384 ACAAGCTTGGAAATTAAGTCGAATAAAAATAAGTCAA
1 ACAAGCTTGAAAATTAAGTCGAATAAAAATAAGTCAA
101022421 A
1 A
101022422 TATTTGCTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 2 0.06
37 33 0.94
ACGTcount: A:0.52, C:0.11, G:0.13, T:0.24
Consensus pattern (37 bp):
ACAAGCTTGAAAATTAAGTCGAATAAAAATAAGTCAA
Found at i:101028748 original size:19 final size:19
Alignment explanation
Indices: 101028708--101028750 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
101028698 ATATCAGTAA
*
101028708 TTTTATTTTAAATTTTAATT
1 TTTTATTTAAAATTTT-ATT
101028728 TTTTATTTAAAATTATT-TT
1 TTTTATTTAAAATT-TTATT
101028747 TTTT
1 TTTT
101028751 CAAAATAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
20 13 0.62
21 2 0.10
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTATTTAAAATTTTATT
Found at i:101030801 original size:15 final size:16
Alignment explanation
Indices: 101030773--101030802 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
101030763 TTCTAAATAC
101030773 CGATTGAGTATTAGTT
1 CGATTGAGTATTAGTT
101030789 CGATTGA-TATTAGT
1 CGATTGAGTATTAGT
101030803 ATTATTGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.43
Consensus pattern (16 bp):
CGATTGAGTATTAGTT
Found at i:101037092 original size:16 final size:17
Alignment explanation
Indices: 101037060--101037092 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
101037050 TTTATAAGTA
*
101037060 TATATCAATCGTTTCAT
1 TATATCAATCATTTCAT
101037077 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
101037093 GTTTCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:101037552 original size:46 final size:46
Alignment explanation
Indices: 101037378--101037559 Score: 233
Period size: 46 Copynumber: 4.0 Consensus size: 46
101037368 TTTGACATGA
* * * * * *
101037378 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * *
101037424 TGCCATGGTATCTTTCAACCATTGTCTTATTC-TTCTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATT-TCATATCAGGT
101037470 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
101037516 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
101037560 AGAGCACACT
Statistics
Matches: 122, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 116 0.95
47 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:101042499 original size:23 final size:23
Alignment explanation
Indices: 101042445--101042499 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
101042435 CAGTTGATGT
*
101042445 TATTTTTATTAATTTATAATTAA
1 TATTTTTATTAATTTATAATAAA
** *
101042468 TATAATTATTTATATTATAA-AAA
1 TATTTTTATTAAT-TTATAATAAA
101042491 TATTTTTAT
1 TATTTTTAT
101042500 ATTTAAAATT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TATTTTTATTAATTTATAATAAA
Found at i:101042507 original size:17 final size:19
Alignment explanation
Indices: 101042456--101042508 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
101042446 ATTTTTATTA
* *
101042456 ATTTATAATTAATATAATT
1 ATTTATATTTAAAATAATT
101042475 ATTTATATTATAAAA-ATATT
1 ATTTATATT-TAAAATA-ATT
101042495 -TTTATATTTAAAAT
1 ATTTATATTTAAAAT
101042509 TGTGAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 5 0.17
19 17 0.59
20 7 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTATATTTAAAATAATT
Found at i:101042903 original size:19 final size:21
Alignment explanation
Indices: 101042876--101042917 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 21
101042866 ATAATTTAAT
*
101042876 TTTTTTAAACAAT-T-TAAAA
1 TTTTATAAACAATATGTAAAA
*
101042895 TTTTATAAATAATATGTAAAA
1 TTTTATAAACAATATGTAAAA
101042916 TT
1 TT
101042918 CTAAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 11 0.58
20 1 0.05
21 7 0.37
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
TTTTATAAACAATATGTAAAA
Found at i:101043051 original size:50 final size:50
Alignment explanation
Indices: 101042994--101043094 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
101042984 CTCGGCCTTC
101042994 ACTTTCTTTTTTCTTGAAAAGGACCCAAATATGTCACCAAAAAAAAAAAA
1 ACTTTCTTTTTTCTTGAAAAGGACCCAAATATGTCACCAAAAAAAAAAAA
101043044 ACTTTCTTTTTTCTTGAAAAGGACCCAAATATGTCACCAAAAAAAAAAAA
1 ACTTTCTTTTTTCTTGAAAAGGACCCAAATATGTCACCAAAAAAAAAAAA
101043094 A
1 A
101043095 AAAGGAAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.28
Consensus pattern (50 bp):
ACTTTCTTTTTTCTTGAAAAGGACCCAAATATGTCACCAAAAAAAAAAAA
Found at i:101046760 original size:14 final size:14
Alignment explanation
Indices: 101046727--101046778 Score: 59
Period size: 15 Copynumber: 3.6 Consensus size: 14
101046717 ACAATACGAT
*
101046727 AATATAAGTGATTAA
1 AATATAA-TAATTAA
* *
101046742 AATATAATATTTTA
1 AATATAATAATTAA
101046756 AATATAAATAATTAA
1 AATAT-AATAATTAA
101046771 AATATAAT
1 AATATAAT
101046779 CTAAGAGAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
14 12 0.39
15 19 0.61
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (14 bp):
AATATAATAATTAA
Found at i:101051666 original size:2 final size:2
Alignment explanation
Indices: 101051661--101051697 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
101051651 AATGCAAAAA
101051661 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
101051698 AAAGGAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:101061130 original size:29 final size:31
Alignment explanation
Indices: 101061078--101061135 Score: 93
Period size: 29 Copynumber: 1.9 Consensus size: 31
101061068 ACTCTCTCAA
*
101061078 CAAAAATTACAAAATAATTTAAAATAATTTT
1 CAAAAATTACAAAATAATTTAAAAAAATTTT
101061109 CAAAAATT-CAAAAT-ATTTAAAAAAATT
1 CAAAAATTACAAAATAATTTAAAAAAATT
101061136 ACCAAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 12 0.46
30 6 0.23
31 8 0.31
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (31 bp):
CAAAAATTACAAAATAATTTAAAAAAATTTT
Found at i:101061170 original size:11 final size:10
Alignment explanation
Indices: 101061154--101061201 Score: 69
Period size: 10 Copynumber: 4.6 Consensus size: 10
101061144 TATATTTTTT
101061154 AAAATTTATAA
1 AAAATTT-TAA
101061165 AAAATTTTAA
1 AAAATTTTAA
*
101061175 AAAATTCTAA
1 AAAATTTTAA
101061185 AAAATATTTAA
1 AAAAT-TTTAA
101061196 AAAATT
1 AAAATT
101061202 AAAAATTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
10 18 0.53
11 16 0.47
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:101061178 original size:21 final size:22
Alignment explanation
Indices: 101061154--101061201 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
101061144 TATATTTTTT
101061154 AAAATTTATAAAAAAT-TTTAA
1 AAAATTTATAAAAAATATTTAA
*
101061175 AAAA-TTCTAAAAAATATTTAA
1 AAAATTTATAAAAAATATTTAA
101061196 AAAATT
1 AAAATT
101061202 AAAAATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 10 0.42
21 13 0.54
22 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
AAAATTTATAAAAAATATTTAA
Found at i:101065744 original size:18 final size:19
Alignment explanation
Indices: 101065712--101065758 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
101065702 AAATTATTTG
*
101065712 AAAAATAAAA-TAAAA-CTA
1 AAAAATAAAACAAAAAGC-A
*
101065730 AAAAATAAACCAAAAAGCA
1 AAAAATAAAACAAAAAGCA
101065749 AAAAATAAAA
1 AAAAATAAAA
101065759 ATAAGGAGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 9 0.38
19 14 0.58
20 1 0.04
ACGTcount: A:0.79, C:0.09, G:0.02, T:0.11
Consensus pattern (19 bp):
AAAAATAAAACAAAAAGCA
Found at i:101072376 original size:3 final size:3
Alignment explanation
Indices: 101072368--101072572 Score: 121
Period size: 3 Copynumber: 66.7 Consensus size: 3
101072358 AATAAAACAA
*
101072368 AAT AAT AAT AAT AAT AAT GAAT AAT AAA AAT ACATT AAT AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A-A-T AAT AAT AAT AAT
** * *
101072415 AAT CAGG AAT AAT AAT AAT AAC AAC AAT AAT -AT AAAT AAT AAT -AT
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * * * * * *
101072460 AAA AAT AAT AGT AAT AAT AAT AAT AAT GAC AGT AAT AAT AAT AAC AGAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * * * * * *
101072509 AAC AAT AGT TAT AGT AAA AAT AAT AAC AAT AGT AAT AAT AGATT AATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AA-T
*
101072557 AAT AAT -GT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
101072573 GTAAATAAAC
Statistics
Matches: 154, Mismatches: 36, Indels: 24
0.72 0.17 0.11
Matches are distributed among these distances:
2 7 0.05
3 127 0.82
4 16 0.10
5 4 0.03
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:101072545 original size:46 final size:46
Alignment explanation
Indices: 101072422--101072548 Score: 119
Period size: 46 Copynumber: 2.7 Consensus size: 46
101072412 TAAAATCAGG
* * * * *
101072422 AATAATAATAATAACAACAATAATATAAATAATAATATAAAAATAATAGT
1 AATAATAAAAATAATAACAAT-A-AT-AATAATAACA-GAAAACAATAGT
* * *
101072472 AATAATAATAATAATGACAGTAATAATAATAACAGAAAACAATAGT
1 AATAATAAAAATAATAACAATAATAATAATAACAGAAAACAATAGT
* * *
101072518 TATAGTAAAAATAATAACAATAGTAATAATA
1 AATAATAAAAATAATAACAATAATAATAATA
101072549 GATTAATTAA
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
46 35 0.54
47 9 0.14
48 2 0.03
49 1 0.02
50 18 0.28
ACGTcount: A:0.63, C:0.05, G:0.06, T:0.27
Consensus pattern (46 bp):
AATAATAAAAATAATAACAATAATAATAATAACAGAAAACAATAGT
Found at i:101074639 original size:33 final size:33
Alignment explanation
Indices: 101074597--101074663 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
101074587 TGTTCAAAAA
101074597 ATTCGTTCTAGTGAGAATTTAGCAGATCTTTTT
1 ATTCGTTCTAGTGAGAATTTAGCAGATCTTTTT
101074630 ATTCGTTCTAGTGAGAATTTAGCAGATCTTTTT
1 ATTCGTTCTAGTGAGAATTTAGCAGATCTTTTT
101074663 A
1 A
101074664 CTAAGGCATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.45
Consensus pattern (33 bp):
ATTCGTTCTAGTGAGAATTTAGCAGATCTTTTT
Found at i:101088634 original size:31 final size:31
Alignment explanation
Indices: 101088599--101088706 Score: 114
Period size: 31 Copynumber: 3.5 Consensus size: 31
101088589 TATTAAATTA
*
101088599 AATTTAATGTTTATCTTGATAGTATTTTATT
1 AATTTAATATTTATCTTGATAGTATTTTATT
* * **
101088630 AATTTAATATTAAT-GTG--AGTTATTAAATTT
1 AATTTAATATTTATCTTGATAG-TATTTTA-TT
*
101088660 GATTTAATATTTATCTTGATAGTATTTTATT
1 AATTTAATATTTATCTTGATAGTATTTTATT
*
101088691 AATTTAATATTAATCT
1 AATTTAATATTTATCT
101088707 GAGTAATATC
Statistics
Matches: 60, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
28 2 0.03
29 5 0.08
30 16 0.27
31 30 0.50
32 5 0.08
33 2 0.03
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (31 bp):
AATTTAATATTTATCTTGATAGTATTTTATT
Found at i:101088666 original size:61 final size:61
Alignment explanation
Indices: 101088589--101088710 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
101088579 ATAAATTTAA
* *
101088589 TATTAAATTAAATTTAATGTTTATCTTGATAGTATTTTATTAATTTAATATTAATGTGAGT
1 TATTAAATTAAATTTAATATTTATCTTGATAGTATTTTATTAATTTAATATTAATCTGAGT
**
101088650 TATTAAATTTGATTTAATATTTATCTTGATAGTATTTTATTAATTTAATATTAATCTGAGT
1 TATTAAATTAAATTTAATATTTATCTTGATAGTATTTTATTAATTTAATATTAATCTGAGT
101088711 AATATCAATT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.53
Consensus pattern (61 bp):
TATTAAATTAAATTTAATATTTATCTTGATAGTATTTTATTAATTTAATATTAATCTGAGT
Found at i:101092210 original size:15 final size:14
Alignment explanation
Indices: 101092175--101092210 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
101092165 AATAAGTCTT
101092175 AATTAATTAATTAA
1 AATTAATTAATTAA
101092189 AACTTAATTAATTAA
1 AA-TTAATTAATTAA
101092204 ACATTAA
1 A-ATTAA
101092211 ACTAAATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 2 0.10
15 17 0.85
16 1 0.05
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (14 bp):
AATTAATTAATTAA
Found at i:101095348 original size:46 final size:46
Alignment explanation
Indices: 101095278--101095550 Score: 289
Period size: 46 Copynumber: 6.0 Consensus size: 46
101095268 GCTTTCTGAA
* * *
101095278 ATGAAATGGGTTAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
101095324 ATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAATAGGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
101095370 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * ** *
101095416 -GGGAATGAATAAGACCATGGTTGAAAGATACTATGGCAATGTAAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
101095461 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
101095507 A-GAAAATAAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
101095551 TCAAAGATAA
Statistics
Matches: 189, Mismatches: 36, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
45 36 0.19
46 153 0.81
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:101095476 original size:91 final size:91
Alignment explanation
Indices: 101095290--101095545 Score: 309
Period size: 91 Copynumber: 2.8 Consensus size: 91
101095280 GAAATGGGTT
** **
101095290 AGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATAGTTGAAAGATA
1 AGACCATGGTTGAAAGATACCATGGCAACATGA-CGGAAATGAATAAGACCATAGTTGAAAGATA
* * * ***
101095355 CCATGGCAATAGGATATAAAATGTGTA
65 CTATGGCAATAGAACATAAAATGAACA
* * *
101095382 AGACCATGGTTGAAAGATACCATGACAACATGACGGGAATGAATAAGACCATGGTTGAAAGATAC
1 AGACCATGGTTGAAAGATACCATGGCAACATGACGGAAATGAATAAGACCATAGTTGAAAGATAC
*
101095447 TATGGCAAT-GTAACATGAAATGAACA
66 TATGGCAATAG-AACATAAAATGAACA
* * *
101095473 AGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAAT-AAGTAAGACCATAGTTGAAAGAC
1 AGACCATGGTTGAAAGATACCATGGCAACATGAC-GGAAATGAA-TAAGACCATAGTTGAAAGAT
101095537 ACTATGGCA
64 ACTATGGCA
101095546 TCATGTCAAA
Statistics
Matches: 141, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
90 1 0.01
91 77 0.55
92 63 0.45
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (91 bp):
AGACCATGGTTGAAAGATACCATGGCAACATGACGGAAATGAATAAGACCATAGTTGAAAGATAC
TATGGCAATAGAACATAAAATGAACA
Found at i:101095564 original size:137 final size:137
Alignment explanation
Indices: 101095290--101095568 Score: 317
Period size: 137 Copynumber: 2.0 Consensus size: 137
101095280 GAAATGGGTT
* * ***
101095290 AGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATAGTTGAAAGATA
1 AGACCATGGTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATAGTTGAAAGATA
* * * ** * * **
101095355 CCATGGCAATAGGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGACGGGA
66 CCATGGCAACAGGACAGAAAATAAGTAAGACCATAGTTGAAAGACACCATGACAACATGACAAGA
*
101095420 ATGAATA
131 ATAAATA
* ** *
101095427 AGACCATGGTTGAAAGATACTATGGCAATGTAACATGAAATGAACAAGACCATGGTTGAAAGATA
1 AGACCATGGTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATAGTTGAAAGATA
** * * * *
101095492 CCATGGCAACCTGACAGAAAATAAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTCAA-A
66 CCATGGCAACAGGACAGAAAATAAGTAAGACCATAGTTGAAAGACACCATGACAACATGACAAGA
101095556 GATAAATA
131 -ATAAATA
101095564 AGACC
1 AGACC
101095569 GTGGATGGGA
Statistics
Matches: 116, Mismatches: 25, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
136 1 0.01
137 115 0.99
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.21
Consensus pattern (137 bp):
AGACCATGGTTGAAAGATACCATGGCAACATAACATGAAATGAACAAGACCATAGTTGAAAGATA
CCATGGCAACAGGACAGAAAATAAGTAAGACCATAGTTGAAAGACACCATGACAACATGACAAGA
ATAAATA
Found at i:101095852 original size:16 final size:17
Alignment explanation
Indices: 101095831--101095863 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
101095821 ATGATGGAGC
101095831 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
101095847 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
101095864 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:101096593 original size:27 final size:27
Alignment explanation
Indices: 101096550--101096611 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
101096540 AAAAATCTAA
*
101096550 ATATAAATATAAAAAAATC-ATAAAAAT
1 ATATAAA-ATAAAAAAAACAATAAAAAT
* *
101096577 ATATAAAATCAAGAAAAACAATATAAAT
1 ATATAAAAT-AAAAAAAACAATAAAAAT
101096605 -TATAAAA
1 ATATAAAA
101096612 ATTAAAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 2 0.07
27 21 0.70
28 7 0.23
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.24
Consensus pattern (27 bp):
ATATAAAATAAAAAAAACAATAAAAAT
Found at i:101096699 original size:27 final size:25
Alignment explanation
Indices: 101096667--101096752 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 25
101096657 TAATAATGTT
101096667 ATTATAAAAATGTAAAAAAATGTAAA
1 ATTATAAAAAT-TAAAAAAATGTAAA
*
101096693 CATTATAAAAA-TAAAAAAATTTAATA
1 -ATTATAAAAATTAAAAAAATGTAA-A
101096719 ATTTATAAAAATTATAAAAAATTGTAAA
1 A-TTATAAAAATTA-AAAAAA-TGTAAA
101096747 ATTATA
1 ATTATA
101096753 CTTAAAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
25 13 0.25
26 10 0.19
27 17 0.33
28 8 0.15
29 4 0.08
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (25 bp):
ATTATAAAAATTAAAAAAATGTAAA
Found at i:101096807 original size:37 final size:40
Alignment explanation
Indices: 101096761--101096837 Score: 115
Period size: 37 Copynumber: 2.0 Consensus size: 40
101096751 TACTTAAAAT
*
101096761 TTTTAAATTTT-TTAAAAA-TATAAATAATAT-TTTTTAA
1 TTTTAAATTTTATTAAAAACTATAAATAACATATTTTTAA
101096798 TTTTAAATTTTATTAAAAACTTATAAATAACATATTTTTA
1 TTTTAAATTTTATTAAAAAC-TATAAATAACATATTTTTA
101096838 TTATTTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
37 11 0.31
38 7 0.20
40 11 0.31
41 6 0.17
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (40 bp):
TTTTAAATTTTATTAAAAACTATAAATAACATATTTTTAA
Found at i:101096903 original size:28 final size:28
Alignment explanation
Indices: 101096829--101096891 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
101096819 TATAAATAAC
* *
101096829 ATATTTTTATTATTTTTTAAAAATTTACA
1 ATATTTTTACTA-TTTTTAAAAATTTAAA
* *
101096858 TTATTTTTACAATTTTTAAAAATTTAAA
1 ATATTTTTACTATTTTTAAAAATTTAAA
101096886 ATATTT
1 ATATTT
101096892 GTATATTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 20 0.69
29 9 0.31
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (28 bp):
ATATTTTTACTATTTTTAAAAATTTAAA
Found at i:101097028 original size:19 final size:18
Alignment explanation
Indices: 101096991--101097030 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
101096981 TTATATGTTG
*
101096991 TTTTCTAAATTTTATATA
1 TTTTCTAAATTTTAAATA
*
101097009 TTTTCTGAATTTTTAAATA
1 TTTTCT-AAATTTTAAATA
101097028 TTT
1 TTT
101097031 ATTTTCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTTCTAAATTTTAAATA
Found at i:101099467 original size:16 final size:16
Alignment explanation
Indices: 101099446--101099495 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
101099436 CGAAAATGAT
101099446 ATAATAAGTATAATAA
1 ATAATAAGTATAATAA
*
101099462 ATAAT-AGTGTAA-AA
1 ATAATAAGTATAATAA
*
101099476 A-AATAA-TACAATAA
1 ATAATAAGTATAATAA
101099490 ATAATA
1 ATAATA
101099496 GGAAAATAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
13 6 0.21
14 7 0.25
15 10 0.36
16 5 0.18
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (16 bp):
ATAATAAGTATAATAA
Found at i:101100971 original size:133 final size:132
Alignment explanation
Indices: 101100717--101101340 Score: 800
Period size: 133 Copynumber: 4.7 Consensus size: 132
101100707 GATCTGCTGT
* * * *
101100717 AATTTGATCTGCTTTACTCCTGCTCAGTAAAGATAAGATCTGTATGTTTAGCCTACTTCACTCCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTA--TATAGCCTGCTTCACTCCT
* * * * * ** * * * * ** * * *
101100782 GCTCAATAAAAATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGATATATAGAGATAAGACTCG
64 ACTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCA
101100847 CCAA
129 CCAA
101100851 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATATAGCCTGC-TCTACTCCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT-GTATATAGCCTGCTTC-ACTCCT
* * *
101100915 GCTCAGTGAAGATAAGGATGGTGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCA
64 ACTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCA
*
101100980 TCAA
129 CCAA
* * * * *
101100984 AATTCGATCTGCTTCACTTCTGCTCGGTGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTA
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT-GTATATAGCCTGCTTCACTCCTA
* * *
101101049 CTCAGTGAAGATAAGGCTGATGATTAGAATCTGCTCCATCGCCGGTACGTGGAGATAAAATTCAT
65 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCAC
101101114 CAA
130 CAA
* ** *
101101117 AATTCGATCTGCTTCACTCCTGCTCAAAGAAGATAAGATCTGGTTTATAGCCTGCTTCACTCCTA
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT-GTATATAGCCTGCTTCACTCCTA
101101182 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCAC
65 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCAC
101101247 CAA
130 CAA
* * * *
101101250 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTGCTATATTTAACCTGCTTCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTG-TATA--TAGCCTGCTTCACTCC
101101315 TACTCAGTGAAGATAAGGCTGATGAT
63 TACTCAGTGAAGATAAGGCTGATGAT
101101341 ATCTGTAATC
Statistics
Matches: 436, Mismatches: 48, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
132 3 0.01
133 349 0.80
134 40 0.09
135 44 0.10
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (132 bp):
AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTATATAGCCTGCTTCACTCCTAC
TCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCACC
AA
Found at i:101112953 original size:14 final size:14
Alignment explanation
Indices: 101112917--101112943 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
101112907 GAAAAAAATA
101112917 AATAAAATATAATG
1 AATAAAATATAATG
101112931 AATAAAATATAAT
1 AATAAAATATAAT
101112944 AAGTATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (14 bp):
AATAAAATATAATG
Found at i:101113234 original size:16 final size:16
Alignment explanation
Indices: 101113213--101113262 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
101113203 CGAAAATGAT
101113213 ATAATAAGTATAATAA
1 ATAATAAGTATAATAA
*
101113229 ATAAT-AGTGTAA-AA
1 ATAATAAGTATAATAA
*
101113243 A-AATAA-TACAATAA
1 ATAATAAGTATAATAA
101113257 ATAATA
1 ATAATA
101113263 GGAAAATAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
13 6 0.21
14 7 0.25
15 10 0.36
16 5 0.18
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (16 bp):
ATAATAAGTATAATAA
Found at i:101114740 original size:133 final size:132
Alignment explanation
Indices: 101114486--101115109 Score: 820
Period size: 133 Copynumber: 4.7 Consensus size: 132
101114476 GATCTGCTGT
* * * *
101114486 AATTTGATCTGCTTTACTCCTGCTCAGTAAAGATAAGATCTGTATGTTTAGCCTACTTCACTCCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTA--TATAGCCTGCTTCACTCCT
* * * * * ** * * * * ** * *
101114551 GCTCAATAAAAATAAGGCTGGTGGCTGAAATCTACTCCATTGCCGATATATAGAGATAAGACTC-
64 ACTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCA
*
101114615 GCTAA
129 TC-AA
101114620 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTAGTATATAGCCTGC-TCTACTCCT
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT-GTATATAGCCTGCTTC-ACTCCT
* * *
101114684 GCTCAGTGAAGATAAGGATGGTGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCA
64 ACTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCA
101114749 TCAA
129 TCAA
* * * *
101114753 AATTTGATCTGCTTCACTTCTGCTCGGTGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTA
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT-GTATATAGCCTGCTTCACTCCTA
*
101114818 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCTGGTACGTGGAGATAAGATTCAT
65 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCAT
101114883 CAA
130 CAA
* * *
101114886 AATTCGATCTGCTTCACTCCTGCTCAATGAAGATAAGATCTGGTTTATAGCCTGCTTCACTCCTA
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCT-GTATATAGCCTGCTTCACTCCTA
*
101114951 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCAC
65 CTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCAT
101115016 CAA
130 CAA
* * * *
101115019 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTGCTATATTTAACCTGCTTCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTG-TATA--TAGCCTGCTTCACTCC
101115084 TACTCAGTGAAGATAAGGCTGATGAT
63 TACTCAGTGAAGATAAGGCTGATGAT
101115110 ATCTGTAATC
Statistics
Matches: 439, Mismatches: 44, Indels: 13
0.89 0.09 0.03
Matches are distributed among these distances:
132 3 0.01
133 351 0.80
134 41 0.09
135 44 0.10
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (132 bp):
AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGTATATAGCCTGCTTCACTCCTAC
TCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCATC
AA
Found at i:101114826 original size:43 final size:44
Alignment explanation
Indices: 101114761--101114965 Score: 125
Period size: 43 Copynumber: 4.7 Consensus size: 44
101114751 AAAATTTGAT
* * *
101114761 CTGCTTCACTTCTGCTCGGTGAAGATAAGATCTGGTATT-TAGC
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGATATTATAGC
* * * ** **
101114804 CTGCTCCACTCCTACTCAGTGAAGATAAG-GCTGATGATTGGAAT
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGAT-ATTATAGC
* * * * ** * *
101114848 CTGCTCCA-TCGCTGGT-ACGTGGAGATAAGAT-TCATCAAAATTCGAT
1 CTGCTTCACTC-CTGCTCA-GTGAAGATAAGATCTGAT-ATTA-TAG-C
* *
101114894 CTGCTTCACTCCTGCTCAATGAAGATAAGATCTGGT-TTATAGC
1 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGATATTATAGC
*
101114937 CTGCTTCACTCCTACTCAGTGAAGATAAG
1 CTGCTTCACTCCTGCTCAGTGAAGATAAG
101114966 GCTGATGATT
Statistics
Matches: 119, Mismatches: 33, Indels: 20
0.69 0.19 0.12
Matches are distributed among these distances:
42 4 0.03
43 58 0.49
44 28 0.24
45 1 0.01
46 23 0.19
47 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (44 bp):
CTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGATATTATAGC
Found at i:101121394 original size:30 final size:30
Alignment explanation
Indices: 101121330--101121394 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
101121320 ATTTCCGAGC
**
101121330 TTGGGGACAAAAGTGTAATTATGCAAAAGT
1 TTGGGGACAAAAGTGTAATTATGCAAAAAA
* * * *
101121360 TTGGGGGCAAAATTGTAATTTTTCAAAAAA
1 TTGGGGACAAAAGTGTAATTATGCAAAAAA
101121390 TTGGG
1 TTGGG
101121395 TGGTGGATTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (30 bp):
TTGGGGACAAAAGTGTAATTATGCAAAAAA
Found at i:101121965 original size:103 final size:104
Alignment explanation
Indices: 101121721--101121986 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
101121711 GTTGTACATA
** *
101121721 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
101121786 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
101121825 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
101121889 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
101121928 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
101121987 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:101129008 original size:14 final size:14
Alignment explanation
Indices: 101128972--101128998 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
101128962 GGAAAAAATA
101128972 AATAAAATATAATG
1 AATAAAATATAATG
101128986 AATAAAATATAAT
1 AATAAAATATAAT
101128999 AAGTATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (14 bp):
AATAAAATATAATG
Found at i:101129291 original size:16 final size:16
Alignment explanation
Indices: 101129270--101129319 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
101129260 CGAAAATGAT
101129270 ATAATAAGTATAATAA
1 ATAATAAGTATAATAA
*
101129286 ATAAT-AGTGTAA-AA
1 ATAATAAGTATAATAA
*
101129300 A-AATAA-TACAATAA
1 ATAATAAGTATAATAA
101129314 ATAATA
1 ATAATA
101129320 GGAAAATAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
13 6 0.21
14 7 0.25
15 10 0.36
16 5 0.18
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (16 bp):
ATAATAAGTATAATAA
Found at i:101132772 original size:5 final size:5
Alignment explanation
Indices: 101132762--101132786 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
101132752 ACTCACAAAA
101132762 TCAAT TCAAT TCAAT TCAAT TCAAT
1 TCAAT TCAAT TCAAT TCAAT TCAAT
101132787 ATCATAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
TCAAT
Found at i:101134540 original size:21 final size:22
Alignment explanation
Indices: 101134496--101134540 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
101134486 GCATATTCAA
*
101134496 TTTTTTAATTGATATTTTATAT
1 TTTTTTAATTGAGATTTTATAT
101134518 TTTTTATAATTG-GATTTTA-AT
1 TTTTT-TAATTGAGATTTTATAT
101134539 TT
1 TT
101134541 AAAATTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 4 0.19
22 11 0.52
23 6 0.29
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
TTTTTTAATTGAGATTTTATAT
Found at i:101139428 original size:6 final size:6
Alignment explanation
Indices: 101139419--101139444 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
101139409 TTGTTTTTGT
101139419 TTTTAA TTTTAA TTTTAA TTTTAA TT
1 TTTTAA TTTTAA TTTTAA TTTTAA TT
101139445 ATATGCAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:101145610 original size:70 final size:67
Alignment explanation
Indices: 101145517--101145649 Score: 167
Period size: 70 Copynumber: 1.9 Consensus size: 67
101145507 TCCGAATAAG
* * ** *
101145517 AAAAGGTAAAACTATGCCATTTTGATAAATATTTACTTTTTCTAAAGTTAAAAGTCAAAACCATT
1 AAAAGGCAAAACTACGCCATTTTGATAAATATTTAC-TCAT-T-AAGTTAAAAGGCAAAACCATT
101145582 AAATT
63 AAATT
** *
101145587 AAAAGGCAAAACTACGTTATTTTGATAAATGTTTACTCATTAAGTTAAAAGGCAAAACCATTA
1 AAAAGGCAAAACTACGCCATTTTGATAAATATTTACTCATTAAGTTAAAAGGCAAAACCATTA
101145650 TATTGTTTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
67 21 0.38
68 1 0.02
69 2 0.04
70 31 0.56
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (67 bp):
AAAAGGCAAAACTACGCCATTTTGATAAATATTTACTCATTAAGTTAAAAGGCAAAACCATTAAA
TT
Found at i:101145766 original size:34 final size:34
Alignment explanation
Indices: 101145728--101145795 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
101145718 ACATTGAGTA
101145728 TAAATAATAGGATTCATTAACTCTACTCGACTTT
1 TAAATAATAGGATTCATTAACTCTACTCGACTTT
*
101145762 TAAATAATAGGATTTATTAACTCTACTCGACTTT
1 TAAATAATAGGATTCATTAACTCTACTCGACTTT
101145796 GACTCGAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (34 bp):
TAAATAATAGGATTCATTAACTCTACTCGACTTT
Found at i:101148719 original size:43 final size:43
Alignment explanation
Indices: 101148666--101148770 Score: 167
Period size: 43 Copynumber: 2.4 Consensus size: 43
101148656 GGTTTAATGT
* *
101148666 ATTGGCACTAAGTGTGCGATACAATTATAGCATT-GGCTAATTA
1 ATTGGCACTAAGTGTGCGAAACAATTATAGC-TTCAGCTAATTA
101148709 ATTGGCACTAAGTGTGCGAAACAATTATAGCTTCAGCTAATTA
1 ATTGGCACTAAGTGTGCGAAACAATTATAGCTTCAGCTAATTA
*
101148752 ATCGGCACTAAGTGTGCGA
1 ATTGGCACTAAGTGTGCGA
101148771 GTTCATTGAA
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
42 2 0.03
43 56 0.97
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGAAACAATTATAGCTTCAGCTAATTA
Found at i:101154443 original size:24 final size:24
Alignment explanation
Indices: 101154409--101154469 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
101154399 TGGGTTTTAC
* *
101154409 TTTTTTCCTTCTTTATGTCTTTCT
1 TTTTTTTCTTCTCTATGTCTTTCT
101154433 TTTTTTTCTTCTCTATGTCTTTCT
1 TTTTTTTCTTCTCTATGTCTTTCT
101154457 TTTTTTTCTTCTC
1 TTTTTTTCTTCTC
101154470 ATCTTTCTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.03, C:0.21, G:0.03, T:0.72
Consensus pattern (24 bp):
TTTTTTTCTTCTCTATGTCTTTCT
Found at i:101154474 original size:21 final size:23
Alignment explanation
Indices: 101154409--101154477 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 23
101154399 TGGGTTTTAC
* *
101154409 TTTTTTCCTTCTTTATGTCTTTCT
1 TTTTTTTCTTCTCTA-GTCTTTCT
101154433 TTTTTTTCTTCTCTATGTCTTTCT
1 TTTTTTTCTTCTCTA-GTCTTTCT
101154457 TTTTTTTCTTCTC-A-TCTTTCT
1 TTTTTTTCTTCTCTAGTCTTTCT
101154478 CTTCATCTTC
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
21 7 0.16
23 1 0.02
24 35 0.81
ACGTcount: A:0.04, C:0.22, G:0.03, T:0.71
Consensus pattern (23 bp):
TTTTTTTCTTCTCTAGTCTTTCT
Found at i:101154525 original size:17 final size:16
Alignment explanation
Indices: 101154503--101154550 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
101154493 CCTCAACCTC
101154503 TTTCTGCTTATGCTTCT
1 TTTCTGCTTAT-CTTCT
*
101154520 TTTCTGTTTATCTTCT
1 TTTCTGCTTATCTTCT
101154536 TCTTCT-CTTAT-TTCT
1 T-TTCTGCTTATCTTCT
101154551 CTTCATATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 4 0.14
16 10 0.36
17 14 0.50
ACGTcount: A:0.06, C:0.23, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTCTGCTTATCTTCT
Found at i:101155181 original size:25 final size:27
Alignment explanation
Indices: 101155153--101155224 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 27
101155143 CCATTTTCTC
101155153 TTCTTCTTCTCACA-TTCTT-TTT-TTA
1 TTCTTCTTCTC-CATTTCTTCTTTATTA
*
101155178 TTCTTCTTCTCCATTTCTTCTTTATTT
1 TTCTTCTTCTCCATTTCTTCTTTATTA
**
101155205 TTCTT-TTCTCTTTTTCTTCT
1 TTCTTCTTCTCCATTTCTTCT
101155225 ACTGTCCAGG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
24 2 0.05
25 16 0.39
26 16 0.39
27 7 0.17
ACGTcount: A:0.07, C:0.25, G:0.00, T:0.68
Consensus pattern (27 bp):
TTCTTCTTCTCCATTTCTTCTTTATTA
Found at i:101163230 original size:5 final size:5
Alignment explanation
Indices: 101163220--101163252 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
101163210 TTGTGTATTT
101163220 TTTTA TTTTA TTTTA TTTTA -TTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
101163253 TCACAAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:101163245 original size:14 final size:15
Alignment explanation
Indices: 101163220--101163252 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
101163210 TTGTGTATTT
101163220 TTTTATTTTATTTTA
1 TTTTATTTTATTTTA
101163235 TTTTA-TTTATTTTA
1 TTTTATTTTATTTTA
101163249 TTTT
1 TTTT
101163253 TCACAAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTATTTTATTTTA
Found at i:101163245 original size:19 final size:18
Alignment explanation
Indices: 101163215--101163252 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 18
101163205 AAAATTTGTG
101163215 TATTTTTTTATTTTATTT
1 TATTTTTTTATTTTATTT
101163233 TATTTTATTTATTTTATTT
1 TATTTT-TTTATTTTATTT
101163252 T
1 T
101163253 TCACAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (18 bp):
TATTTTTTTATTTTATTT
Found at i:101167630 original size:5 final size:5
Alignment explanation
Indices: 101167620--101167651 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
101167610 TTGTGTGTTC
101167620 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
101167652 TCACAAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:101167634 original size:9 final size:9
Alignment explanation
Indices: 101167620--101167650 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
101167610 TTGTGTGTTC
101167620 TTTATTTTA
1 TTTATTTTA
101167629 TTTATTTTA
1 TTTATTTTA
101167638 TTTTATTTTA
1 -TTTATTTTA
101167648 TTT
1 TTT
101167651 TTCACAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:101167773 original size:6 final size:6
Alignment explanation
Indices: 101167757--101167786 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
101167747 ATGTATATAA
101167757 AAAAAT AAAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT -AAAAAT AAAAAT AAAAAT AAAAA
101167787 AATGAATGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:101177854 original size:21 final size:21
Alignment explanation
Indices: 101177830--101177877 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
101177820 AATTTATTGA
101177830 ATTTTTA-ACATAATTTTTAAT
1 ATTTTTATA-ATAATTTTTAAT
* *
101177851 A-TTTTATATTTATTTTTAAT
1 ATTTTTATAATAATTTTTAAT
101177871 ATTTTTA
1 ATTTTTA
101177878 GAATTATTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTTTTATAATAATTTTTAAT
Found at i:101177884 original size:21 final size:20
Alignment explanation
Indices: 101177842--101177890 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
101177832 TTTTAACATA
* *
101177842 ATTTTTAATATTTTATATTT
1 ATTTTTAATATTTTAGAATT
101177862 ATTTTTAATATTTTTAGAATT
1 ATTTTTAATA-TTTTAGAATT
*
101177883 ATTGTTAA
1 ATTTTTAA
101177891 GAATTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (20 bp):
ATTTTTAATATTTTAGAATT
Found at i:101189717 original size:60 final size:60
Alignment explanation
Indices: 101189619--101189740 Score: 208
Period size: 60 Copynumber: 2.0 Consensus size: 60
101189609 GGAAAAACTT
* *
101189619 ATTTAAAAATTTTCCGCTAGCTCGTTTGTCCCACGTGGTGATAAAACCTGATTTTTATGA
1 ATTTAAAAATTTTCCGCTAGCTCGTTCGTCCCACGTGGTGATAAAACCTGATTCTTATGA
* *
101189679 ATTTAAAAATTTTCCGCTAGCTCGTTCGTCCCATGTGGTGATAAAACTTGATTCTTATGA
1 ATTTAAAAATTTTCCGCTAGCTCGTTCGTCCCACGTGGTGATAAAACCTGATTCTTATGA
101189739 AT
1 AT
101189741 CTAACCAATC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (60 bp):
ATTTAAAAATTTTCCGCTAGCTCGTTCGTCCCACGTGGTGATAAAACCTGATTCTTATGA
Found at i:101191593 original size:12 final size:11
Alignment explanation
Indices: 101191576--101191606 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
101191566 AGAGGCAACG
101191576 AAAAAATGTAAA
1 AAAAAAT-TAAA
101191588 AAAAAATTAAA
1 AAAAAATTAAA
101191599 AAAAAATT
1 AAAAAATT
101191607 TACACCCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (11 bp):
AAAAAATTAAA
Found at i:101193110 original size:15 final size:15
Alignment explanation
Indices: 101193069--101193137 Score: 77
Period size: 16 Copynumber: 4.4 Consensus size: 15
101193059 CATTAGAAAT
*
101193069 ATAATTAGTTAGTTAA
1 ATAATTA-TTTGTTAA
*
101193085 GTAATTATTTGTTAA
1 ATAATTATTTGTTAA
101193100 TATAATT-TTTGCTTAA
1 -ATAATTATTTG-TTAA
101193116 ATAATTATTTGTTAA
1 ATAATTATTTGTTAA
101193131 CATAATT
1 -ATAATT
101193138 TTGACTTATC
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
15 21 0.46
16 25 0.54
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.51
Consensus pattern (15 bp):
ATAATTATTTGTTAA
Found at i:101193124 original size:31 final size:31
Alignment explanation
Indices: 101193081--101193139 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
101193071 AATTAGTTAG
* *
101193081 TTAAGTAATTATTTGTTAATATAATTTTTGC
1 TTAAATAATTATTTGTTAACATAATTTTTGC
101193112 TTAAATAATTATTTGTTAACATAATTTT
1 TTAAATAATTATTTGTTAACATAATTTT
101193140 GACTTATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.54
Consensus pattern (31 bp):
TTAAATAATTATTTGTTAACATAATTTTTGC
Found at i:101201501 original size:8 final size:8
Alignment explanation
Indices: 101201488--101201521 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
101201478 TTTTTCTCTC
101201488 TTATTATT
1 TTATTATT
101201496 TTATTATT
1 TTATTATT
*
101201504 TTATTCTCT
1 TTATTAT-T
101201513 TTATTATT
1 TTATTATT
101201521 T
1 T
101201522 ATTTTCTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (8 bp):
TTATTATT
Found at i:101202528 original size:3 final size:3
Alignment explanation
Indices: 101202520--101202544 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
101202510 GAGTTATAAC
101202520 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
101202545 TGTCTTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:101216309 original size:17 final size:17
Alignment explanation
Indices: 101216287--101216323 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
101216277 AAACATGTTT
101216287 ATTTATTAAAAAATTTA
1 ATTTATTAAAAAATTTA
**
101216304 ATTTATTAAGTAATTTA
1 ATTTATTAAAAAATTTA
101216321 ATT
1 ATT
101216324 AAAATTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
ATTTATTAAAAAATTTA
Found at i:101217342 original size:13 final size:11
Alignment explanation
Indices: 101217314--101217376 Score: 103
Period size: 11 Copynumber: 5.9 Consensus size: 11
101217304 TCTTTCAATA
101217314 TTCTCTCAAAT
1 TTCTCTCAAAT
101217325 TTCTCTCAAAT
1 TTCTCTCAAAT
101217336 TTCTCTCAAA-
1 TTCTCTCAAAT
101217346 -TCTCTCAAAT
1 TTCTCTCAAAT
101217356 TTCTCTCAAAT
1 TTCTCTCAAAT
*
101217367 TCCTCTCAAA
1 TTCTCTCAAA
101217377 ACTCTCGTTA
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
9 9 0.18
11 40 0.82
ACGTcount: A:0.29, C:0.30, G:0.00, T:0.41
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:101217349 original size:20 final size:21
Alignment explanation
Indices: 101217314--101217376 Score: 101
Period size: 20 Copynumber: 3.0 Consensus size: 21
101217304 TCTTTCAATA
101217314 TTCTCTCAAATTTCTCTCAAAT
1 TTCTCTCAAA-TTCTCTCAAAT
101217336 TTCTCTCAAA-TCTCTCAAAT
1 TTCTCTCAAATTCTCTCAAAT
101217356 TTCTCTCAAATTCCTCTCAAA
1 TTCTCTCAAATT-CTCTCAAA
101217377 ACTCTCGTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
20 20 0.51
21 1 0.03
22 18 0.46
ACGTcount: A:0.29, C:0.30, G:0.00, T:0.41
Consensus pattern (21 bp):
TTCTCTCAAATTCTCTCAAAT
Found at i:101217353 original size:31 final size:31
Alignment explanation
Indices: 101217315--101217382 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
101217305 CTTTCAATAT
*
101217315 TCTCTCAAATTTCTCTCAAATTTCTCTCAAA
1 TCTCTCAAATTTCTCTCAAATTCCTCTCAAA
101217346 TCTCTCAAATTTCTCTCAAATTCCTCTCAAA
1 TCTCTCAAATTTCTCTCAAATTCCTCTCAAA
*
101217377 ACTCTC
1 TCTCTC
101217383 GTTAATTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.28, C:0.32, G:0.00, T:0.40
Consensus pattern (31 bp):
TCTCTCAAATTTCTCTCAAATTCCTCTCAAA
Found at i:101217432 original size:16 final size:15
Alignment explanation
Indices: 101217403--101217433 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
101217393 TCAAAAAAGC
*
101217403 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
101217418 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
101217433 T
1 T
101217434 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:101220747 original size:126 final size:126
Alignment explanation
Indices: 101220201--101220739 Score: 783
Period size: 126 Copynumber: 4.3 Consensus size: 126
101220191 GCCTAAGTTA
* *
101220201 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTACTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTACTGAAAA
* **
101220266 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGTGTTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTT
* * * * * * * * *
101220327 TTTCATATACCACTGTTGCAAAAGAGCATCCATGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTACTGAAAA
* *
101220392 TGCATCCTGCTTGAAGTGTTTTT-ACCACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGTGTTTTTGA-CACTATTTACACAGACACGTCTTCTCAAAATTATTT
* * *
101220453 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCGGTACTTTTACTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTACTGAAAA
* * *
101220518 TGCATCCTGCTTGAAGTGTTTTTTACACTATTTGCACAGACTCGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGTGTTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTT
* * * * * *
101220579 TTTCAGATATTACTGTAGCAGAAGAGCGTCCACGTGGGAGCTTCTTTCAGTATTTTTACCGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTACTGAAAA
* *
101220644 TGCATCCTGCTTGAAGTGTTTTTGACACTATTTACACAGACACGTCCTCTCAAATTTATTT
66 TGCATCCTGCTTGAAGTGTTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTT
*
101220705 TTTCAGAGACTACTGTAGCAAAAGAGCGCCCACGT
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
101220740 AGAAGCTTTT
Statistics
Matches: 370, Mismatches: 41, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
125 1 0.00
126 368 0.99
127 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (126 bp):
TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTACTGAAAA
TGCATCCTGCTTGAAGTGTTTTTGACACTATTTACACAGACACGTCTTCTCAAAATTATTT
Found at i:101222514 original size:38 final size:39
Alignment explanation
Indices: 101222430--101222562 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
101222420 ACCAATATGG
*
101222430 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
101222469 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
101222507 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
101222548 CACCCAGTGTCTCAT
1 CACCCAGTGCCTCAT
101222563 GACTCGAGGT
Statistics
Matches: 73, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.26
39 36 0.49
40 4 0.05
41 14 0.19
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:101223125 original size:5 final size:5
Alignment explanation
Indices: 101223115--101223147 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
101223105 TTTATATATA
101223115 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
101223148 CTTAATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:101225572 original size:27 final size:29
Alignment explanation
Indices: 101225542--101225598 Score: 66
Period size: 30 Copynumber: 2.0 Consensus size: 29
101225532 ATATTATAAA
101225542 TAATAT-AAA-ACTTTA-ATAATATATATT
1 TAATATAAAATACTTTATATAATAT-TATT
*
101225569 TAATTTGAAAATACTTTATATAATATTATT
1 TAATAT-AAAATACTTTATATAATATTATT
101225599 ATACATTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
27 5 0.20
29 3 0.12
30 10 0.40
31 7 0.28
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (29 bp):
TAATATAAAATACTTTATATAATATTATT
Found at i:101235325 original size:16 final size:16
Alignment explanation
Indices: 101235304--101235344 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
101235294 CATGTTCATA
101235304 TATATATATATACATG
1 TATATATATATACATG
* **
101235320 TATATATATGTGTATG
1 TATATATATATACATG
101235336 TATATATAT
1 TATATATAT
101235345 TTTTTTTGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.39, C:0.02, G:0.10, T:0.49
Consensus pattern (16 bp):
TATATATATATACATG
Found at i:101236904 original size:20 final size:20
Alignment explanation
Indices: 101236868--101236905 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
101236858 AAATCACATT
*
101236868 TTTTACATTTAATATATATA
1 TTTTACATTTAAAATATATA
101236888 TTTTA-ATTTCAAAATATA
1 TTTTACATTT-AAAATATA
101236906 CAGTGACAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTTACATTTAAAATATATA
Found at i:101237498 original size:2 final size:2
Alignment explanation
Indices: 101237491--101237515 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
101237481 CGAAGAACTT
101237491 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
101237516 GCACTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:101240650 original size:2 final size:2
Alignment explanation
Indices: 101240643--101240667 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
101240633 ATTAAAGATA
101240643 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
101240668 GCAACAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:101240654 original size:23 final size:23
Alignment explanation
Indices: 101240601--101240655 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
101240591 AAAACATGAT
*
101240601 TATAT-TAAAATTAAAAATAAAA
1 TATATATATAATTAAAAATAAAA
* * * *
101240623 TGTAAATATAATTAAAGATAATA
1 TATATATATAATTAAAAATAAAA
101240646 TATATATATA
1 TATATATATA
101240656 TATATATATA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (23 bp):
TATATATATAATTAAAAATAAAA
Found at i:101244499 original size:21 final size:22
Alignment explanation
Indices: 101244475--101244519 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
101244465 CAATAATATA
101244475 TTAAAAATATTATT-TTAAAAT
1 TTAAAAATATTATTGTTAAAAT
*
101244496 TT-AAATTATTATTGTTAAAAT
1 TTAAAAATATTATTGTTAAAAT
101244517 TTA
1 TTA
101244520 TTATTAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TTAAAAATATTATTGTTAAAAT
Found at i:101244534 original size:18 final size:19
Alignment explanation
Indices: 101244511--101244546 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
101244501 TTATTATTGT
*
101244511 TAAAATT-TATTATTAAAA
1 TAAAATTGTACTATTAAAA
101244529 TAAAATTGTACTATTAAA
1 TAAAATTGTACTATTAAA
101244547 TAATTAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (19 bp):
TAAAATTGTACTATTAAAA
Found at i:101248503 original size:16 final size:16
Alignment explanation
Indices: 101248484--101248514 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
101248474 TTTCTTTTTC
101248484 TTTTTATTTTTTTTAT
1 TTTTTATTTTTTTTAT
101248500 TTTTTATTTTTTTTA
1 TTTTTATTTTTTTTA
101248515 CTGAACCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTTATTTTTTTTAT
Found at i:101252726 original size:28 final size:27
Alignment explanation
Indices: 101252669--101252728 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
101252659 AATACATATA
* *
101252669 TTTAATTATAAAAATGCAACACGCATT
1 TTTAATTATAAAAATACAACACACATT
* *
101252696 TTTAATTATAAAAATATAACACATACTT
1 TTTAATTATAAAAATACAACACACA-TT
101252724 TTTAA
1 TTTAA
101252729 GCACTAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (27 bp):
TTTAATTATAAAAATACAACACACATT
Found at i:101253566 original size:15 final size:16
Alignment explanation
Indices: 101253546--101253578 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
101253536 TTTTTTTTAA
101253546 TTCAACTCGA-TCGAT
1 TTCAACTCGATTCGAT
*
101253561 TTCAACTTGATTCGAT
1 TTCAACTCGATTCGAT
101253577 TT
1 TT
101253579 GAAAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.42
Consensus pattern (16 bp):
TTCAACTCGATTCGAT
Found at i:101256694 original size:27 final size:27
Alignment explanation
Indices: 101256637--101256717 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
101256627 ATATTTTTTA
* * *
101256637 AATACATATATTTAATTATAAAAATGC
1 AATACAAATTTTTAATTATAAAAAAGC
* *
101256664 AATACACATTTTTAATTATAAAAAAGT
1 AATACAAATTTTTAATTATAAAAAAGC
*
101256691 AATAAATAATTTTTTTAATTATAAAAA
1 AATACA-AA--TTTTTAATTATAAAAA
101256718 TATAACACAT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 28 0.62
28 1 0.02
30 16 0.36
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (27 bp):
AATACAAATTTTTAATTATAAAAAAGC
Found at i:101256734 original size:30 final size:30
Alignment explanation
Indices: 101256672--101256734 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
101256662 GCAATACACA
*
101256672 TTTTTAATTATAAAAAAGTAATAAATAATT
1 TTTTTAATTATAAAAAAGTAACAAATAATT
* *
101256702 TTTTTAATTATAAAAATA-TAACACATACTT
1 TTTTTAATTATAAAAA-AGTAACAAATAATT
101256732 TTT
1 TTT
101256735 AAGCACTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.46
Consensus pattern (30 bp):
TTTTTAATTATAAAAAAGTAACAAATAATT
Done.