Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 31 of 352
Found at i:10023004 original size:11 final size:11
Alignment explanation
Indices: 10022988--10023012 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10022978 TCAAACCCCA
10022988 AAAAAAAAAAG
1 AAAAAAAAAAG
10022999 AAAAAAAAAAG
1 AAAAAAAAAAG
10023010 AAA
1 AAA
10023013 GATATTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:10027253 original size:24 final size:24
Alignment explanation
Indices: 10027222--10027274 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
10027212 AAATTAGATC
10027222 TCTATTTCTTTTATAATTCTTATA
1 TCTATTTCTTTTATAATTCTTATA
10027246 TCTATTTCTTTTATAATTCTTATA
1 TCTATTTCTTTTATAATTCTTATA
*
10027270 CCTAT
1 TCTAT
10027275 AAATAAAGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.15, G:0.00, T:0.60
Consensus pattern (24 bp):
TCTATTTCTTTTATAATTCTTATA
Found at i:10028433 original size:15 final size:15
Alignment explanation
Indices: 10028413--10028464 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
10028403 ATTACAAAAC
10028413 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
10028428 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
*
10028447 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
10028462 ATT
1 ATT
10028465 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:10028450 original size:19 final size:19
Alignment explanation
Indices: 10028426--10028462 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10028416 TATTATTAAT
*
10028426 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
10028445 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
10028463 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:10028528 original size:16 final size:16
Alignment explanation
Indices: 10028497--10028533 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
10028487 ATGTGAATAA
10028497 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
10028513 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
10028529 TATTA
1 TATTA
10028534 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:10028578 original size:73 final size:74
Alignment explanation
Indices: 10028435--10028604 Score: 177
Period size: 73 Copynumber: 2.3 Consensus size: 74
10028425 TATATTTATA
* * *
10028435 ATTATAATAAATATTTATTATTAAAATATTAATATTGAATATTTTTAATAATATGTGAATAATAT
1 ATTATATTAAA-ATTTATTATTAAAATA-TAATATTGAATATTTTAAATAATATATGAATAATAT
*
10028500 TATTTAAAATT
64 AATTTAAAATT
* * *
10028511 ATTATTTTTAAAATTTATTATTAAAATA-AA-ATTGAA-ATATTTAAATAATTTATTAA-AATAA
1 ATTA-TATTAAAATTTATTATTAAAATATAATATTGAATAT-TTTAAATAATATATGAATAAT-A
* *
10028572 TAATTTATATTT
63 TAATTTAAAATT
10028584 ATTATATTAATAATTTATTAT
1 ATTATATTAA-AATTTATTAT
10028605 ACTACTAAAT
Statistics
Matches: 80, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
72 10 0.12
73 43 0.54
74 2 0.03
76 20 0.25
77 5 0.06
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (74 bp):
ATTATATTAAAATTTATTATTAAAATATAATATTGAATATTTTAAATAATATATGAATAATATAA
TTTAAAATT
Found at i:10028584 original size:22 final size:22
Alignment explanation
Indices: 10028558--10028601 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
10028548 TATTTAAATA
10028558 ATTTATTAAAATAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
* *
10028580 ATTTATTATATTAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
10028602 TATACTACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTATTAAAATAATAATTTAT
Found at i:10032922 original size:29 final size:30
Alignment explanation
Indices: 10032863--10032920 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
10032853 TCCGAGCCTT
*
10032863 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
10032893 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
10032921 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:10033150 original size:13 final size:13
Alignment explanation
Indices: 10033132--10033163 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
10033122 TTTCCAGCAA
10033132 TTATGAATTTATT
1 TTATGAATTTATT
10033145 TTATGAATTTATT
1 TTATGAATTTATT
*
10033158 TGATGA
1 TTATGA
10033164 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:10033371 original size:50 final size:50
Alignment explanation
Indices: 10033258--10033499 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
10033248 ATTTGGGTAA
* * *
10033258 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
10033314 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
10033364 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
10033414 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
10033464 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
10033500 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:10033447 original size:100 final size:103
Alignment explanation
Indices: 10033258--10033507 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
10033248 ATTTGGGTAA
10033258 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
10033323 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
10033364 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
10033426 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
10033464 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
10033508 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:10037735 original size:19 final size:18
Alignment explanation
Indices: 10037683--10037735 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
10037673 ATGATTAACC
*
10037683 AATTCAATAATATAAA-T
1 AATTCAATAATGTAAATT
*
10037700 AATACAA-AATGTGAAATTT
1 AATTCAATAATGT-AAA-TT
10037719 AATTCAATAATGTAAAT
1 AATTCAATAATGTAAAT
10037736 AGTAAACATA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
16 4 0.14
17 9 0.31
18 1 0.03
19 10 0.34
20 5 0.17
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.34
Consensus pattern (18 bp):
AATTCAATAATGTAAATT
Found at i:10039165 original size:18 final size:19
Alignment explanation
Indices: 10039126--10039168 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
10039116 ATGGAAGTAA
10039126 TAAAATGTGAATAATAAAAT
1 TAAAATGT-AATAATAAAAT
10039146 TAAAATGT-ATAA-AAATAT
1 TAAAATGTAATAATAAA-AT
10039164 TAAAA
1 TAAAA
10039169 GAAAGTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.14
18 11 0.50
20 8 0.36
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (19 bp):
TAAAATGTAATAATAAAAT
Found at i:10042131 original size:26 final size:25
Alignment explanation
Indices: 10042102--10042183 Score: 62
Period size: 25 Copynumber: 3.2 Consensus size: 25
10042092 CAATAGATTT
10042102 ATCTCGTACACTTAAATTTAGAATTG
1 ATCTC-TACACTTAAATTTAGAATTG
* * * *
10042128 ATCTCTTCAATCAAATATT--CATAT-
1 ATCTCTACACTTAAAT-TTAGAAT-TG
*
10042152 ATCTCATACACTTAAATTTAGAGTTG
1 ATCTC-TACACTTAAATTTAGAATTG
10042178 ATCTCT
1 ATCTCT
10042184 TTAATCGAAC
Statistics
Matches: 41, Mismatches: 9, Indels: 13
0.65 0.14 0.21
Matches are distributed among these distances:
24 9 0.22
25 19 0.46
26 13 0.32
ACGTcount: A:0.34, C:0.18, G:0.07, T:0.40
Consensus pattern (25 bp):
ATCTCTACACTTAAATTTAGAATTG
Found at i:10044815 original size:21 final size:20
Alignment explanation
Indices: 10044782--10044820 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
10044772 AACTTTTCAC
*
10044782 AATTTAGTGTGAATAAAATTT
1 AATTTAATGTGAA-AAAATTT
*
10044803 AATTTAATTTGAAAAAAT
1 AATTTAATGTGAAAAAAT
10044821 ATTTTTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (20 bp):
AATTTAATGTGAAAAAATTT
Found at i:10044993 original size:20 final size:19
Alignment explanation
Indices: 10044970--10045015 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
10044960 CAAACTTAAC
*
10044970 AAAAATTAAAAATAATTTTT
1 AAAAATTAAAAAT-ATTTAT
**
10044990 AAAAATTCTAAATATTTAT
1 AAAAATTAAAAATATTTAT
10045009 AAAAATT
1 AAAAATT
10045016 TTAATTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATTAAAAATATTTAT
Found at i:10045006 original size:19 final size:18
Alignment explanation
Indices: 10044979--10045029 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
10044969 CAAAAATTAA
10044979 AAATAATTTTTAAAAATTCT
1 AAAT-ATTTTTAAAAATT-T
*
10044999 AAATATTTATAAAAATTT
1 AAATATTTTTAAAAATTT
* *
10045017 TAATTTTTTTAAA
1 AAATATTTTTAAA
10045030 TATAATAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 11 0.41
19 12 0.44
20 4 0.15
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
AAATATTTTTAAAAATTT
Found at i:10060677 original size:19 final size:19
Alignment explanation
Indices: 10060653--10060692 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10060643 TACCTCACAG
*
10060653 CCCAATAGCTAAACCCAGA
1 CCCAATAACTAAACCCAGA
* *
10060672 CCCAATAATTAAACCTAGA
1 CCCAATAACTAAACCCAGA
10060691 CC
1 CC
10060693 TATTTTTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.35, G:0.07, T:0.15
Consensus pattern (19 bp):
CCCAATAACTAAACCCAGA
Found at i:10062286 original size:6 final size:6
Alignment explanation
Indices: 10062275--10062304 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
10062265 GATTTTATTT
10062275 ATATAC ATATAC ATTATAC ATATAC ATATA
1 ATATAC ATATAC A-TATAC ATATAC ATATA
10062305 TTTTTTCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (6 bp):
ATATAC
Found at i:10062294 original size:13 final size:13
Alignment explanation
Indices: 10062276--10062301 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10062266 ATTTTATTTA
10062276 TATACATATACAT
1 TATACATATACAT
10062289 TATACATATACAT
1 TATACATATACAT
10062302 ATATTTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
TATACATATACAT
Found at i:10063514 original size:132 final size:130
Alignment explanation
Indices: 10063269--10063638 Score: 483
Period size: 132 Copynumber: 2.8 Consensus size: 130
10063259 AAGTATTCGT
*
10063269 TTAAGAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGTGAAATAGTGCCCTAACG
1 TTAA-AATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGTG-AATCGTGCCCTAACG
* *
10063334 TGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATTGAATATCCCTTCAAAATTTCACTCACGCC
64 TGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACGCC
10063399 T-
129 TA
* * * * *
10063400 TTCAAAAATTCTTTAAAACGAAGTCGAGATTTGATGTTTGGCAATTCGCAGAAGCGTGCCCTAAC
1 TT--AAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCG-TGAATCGTGCCCTAAC
* * *
10063465 GTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCATTCATGT
63 GTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACGC
10063530 CTA
128 CTA
** * * *
10063533 TTAAAA-TCCCTAAAACGAAGGCGATATGCGATATTTGGCAATTCGTTGAATCGTGCCCTAACGT
1 TTAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCG-TGAATCGTGCCCTAACGT
* * * * *
10063597 GTTGGGTTGCAATTTCCCATTTGTTTAAAATAATCAAATATC
65 GTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATC
10063639 CCACAGGTCT
Statistics
Matches: 209, Mismatches: 26, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
130 85 0.41
131 6 0.03
132 113 0.54
133 5 0.02
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (130 bp):
TTAAAATTCTTTAAAACGAAGACGAGATTCGATATTTGGCAATTCGTGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCACGCCTA
Found at i:10066399 original size:11 final size:11
Alignment explanation
Indices: 10066378--10066407 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
10066368 TACTCAAGTT
10066378 AGCTA-AATCG
1 AGCTACAATCG
10066388 AGCTACAATCG
1 AGCTACAATCG
10066399 AGCTACAAT
1 AGCTACAAT
10066408 GATCTCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.26
11 14 0.74
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (11 bp):
AGCTACAATCG
Found at i:10078897 original size:11 final size:11
Alignment explanation
Indices: 10078881--10078905 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10078871 CACCATGGAA
10078881 TTTTCAATTAT
1 TTTTCAATTAT
10078892 TTTTCAATTAT
1 TTTTCAATTAT
10078903 TTT
1 TTT
10078906 CTAACTATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTCAATTAT
Found at i:10079030 original size:17 final size:17
Alignment explanation
Indices: 10079005--10079038 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10078995 TGGGTTCCAA
*
10079005 AGTAAATTTCTAAATTT
1 AGTAAATTTCAAAATTT
*
10079022 AGTACATTTCAAAATTT
1 AGTAAATTTCAAAATTT
10079039 TATAGAACCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (17 bp):
AGTAAATTTCAAAATTT
Found at i:10079788 original size:15 final size:15
Alignment explanation
Indices: 10079770--10079805 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
10079760 ATGCATATGC
10079770 ATATCATATATATAT
1 ATATCATATATATAT
*
10079785 ATATCATATATTTAT
1 ATATCATATATATAT
*
10079800 GTATCA
1 ATATCA
10079806 ATCATAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (15 bp):
ATATCATATATATAT
Found at i:10082470 original size:21 final size:21
Alignment explanation
Indices: 10082444--10082498 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
10082434 TTAAACTAAA
10082444 TTAA-TTTATTT-TTTTATAATT
1 TTAATTTTATTTATTTT-TAA-T
*
10082465 TTAATTTTATTTATTTTTTAT
1 TTAATTTTATTTATTTTTAAT
10082486 TTAATTTTATTTA
1 TTAATTTTATTTA
10082499 AAAGTATCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 18 0.58
22 9 0.29
23 4 0.13
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (21 bp):
TTAATTTTATTTATTTTTAAT
Found at i:10082477 original size:10 final size:10
Alignment explanation
Indices: 10082464--10082499 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
10082454 TTTTTATAAT
10082464 TTTAATTTTA
1 TTTAATTTTA
*
10082474 TTTATTTTTTA
1 TTTA-ATTTTA
10082485 TTTAATTTTA
1 TTTAATTTTA
10082495 TTTAA
1 TTTAA
10082500 AAGTATCACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTAATTTTA
Found at i:10087509 original size:10 final size:9
Alignment explanation
Indices: 10087488--10087535 Score: 51
Period size: 9 Copynumber: 4.9 Consensus size: 9
10087478 AATATAAATT
10087488 AAAAATTTA
1 AAAAATTTA
10087497 AAAAATTTA
1 AAAAATTTA
10087506 AAAAATTAAATA
1 AAAAATT---TA
*
10087518 AAGAATTTA
1 AAAAATTTA
10087527 AAATAATTT
1 AAA-AATTT
10087536 TTTTATAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
9 20 0.61
10 5 0.15
12 8 0.24
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAAATTTA
Found at i:10087516 original size:30 final size:32
Alignment explanation
Indices: 10087474--10087535 Score: 94
Period size: 30 Copynumber: 2.0 Consensus size: 32
10087464 GTGTTTGACA
10087474 AAAAAATATAAATTAAA-AATTTAAAA-AATTT
1 AAAAAATATAAA-TAAAGAATTTAAAATAATTT
10087505 AAAAAAT-TAAATAAAGAATTTAAAATAATTT
1 AAAAAATATAAATAAAGAATTTAAAATAATTT
10087536 TTTTATAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 4 0.14
30 13 0.45
31 12 0.41
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (32 bp):
AAAAAATATAAATAAAGAATTTAAAATAATTT
Found at i:10092824 original size:13 final size:13
Alignment explanation
Indices: 10092806--10092831 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10092796 TGCAATAGAT
10092806 TAGAGTAGAGTAG
1 TAGAGTAGAGTAG
10092819 TAGAGTAGAGTAG
1 TAGAGTAGAGTAG
10092832 AGATAGCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.23
Consensus pattern (13 bp):
TAGAGTAGAGTAG
Found at i:10095193 original size:21 final size:20
Alignment explanation
Indices: 10095167--10095209 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
10095157 TTTTATATTA
*
10095167 TTTAATTTAATTGTTTTCATT
1 TTTAA-TTAATTGTTATCATT
*
10095188 TTTAATTCATTGTTATCATT
1 TTTAATTAATTGTTATCATT
10095208 TT
1 TT
10095210 AGACTCGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (20 bp):
TTTAATTAATTGTTATCATT
Found at i:10097474 original size:29 final size:29
Alignment explanation
Indices: 10097406--10097467 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
10097396 TTATTCTCGC
* * *
10097406 ATATAT-TTTTTTCTAAATTTATTTATGT
1 ATATATATGTTTTCTAAATCTATTTATAT
10097434 ATATATATGTTTT-TAAATCTA-TTATAT
1 ATATATATGTTTTCTAAATCTATTTATAT
10097461 ATATATA
1 ATATATA
10097468 AGTGTTTCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 12 0.40
28 13 0.43
29 5 0.17
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (29 bp):
ATATATATGTTTTCTAAATCTATTTATAT
Found at i:10098831 original size:127 final size:128
Alignment explanation
Indices: 10098517--10098846 Score: 403
Period size: 128 Copynumber: 2.6 Consensus size: 128
10098507 AAAAATTCCT
* * * *
10098517 TAAAACGAAAGCAATGTTTGATGTTTGAAAATTCGAGAAATCGTGCCCTATCGTGCTGGGTTTCG
1 TAAAAC-AAGGCAATGTTTGATGTTTGGAAATTCAAGGAATCGTGCCCTATCGTGCTGGGTTTCG
* * * * * * * *
10098582 ATTTCCCATTTGTTCAAAATAATCGAACCTTCCTTTAGAATTTCACTCGTGTTTTTCTAAATTT
65 ATTTCTCGTTTATTCAAAATAATCAAACATTCCTTTAGAATTTCACTCGTATTCTTCTAAATTC
* ** * *
10098646 TAAAACAAGGCAATGTTTGATGCTTGGAAATT-TGGAGAACCGTGCCCTATCATGCTGGGTTTCG
1 TAAAACAAGGCAATGTTTGATGTTTGGAAATTCAAG-GAATCGTGCCCTATCGTGCTGGGTTTCG
* *
10098710 ATTTCTCGTTTATTCAAAATAATCAAATATTCCTTTAGAATTTCATTCGTATTCTT-TAAATTC
65 ATTTCTCGTTTATTCAAAATAATCAAACATTCCTTTAGAATTTCACTCGTATTCTTCTAAATTC
** * * *
10098773 TAAAACAAGGCAATGTTCAATGTTTGGAAGTTCAAGGAATCGTGCCCTACCGTGCTGGGTTTTGA
1 TAAAACAAGGCAATGTTTGATGTTTGGAAATTCAAGGAATCGTGCCCTATCGTGCTGGGTTTCGA
*
10098838 TTTTTCGTT
66 TTTCTCGTT
10098847 GGACTAAATG
Statistics
Matches: 170, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
127 68 0.40
128 96 0.56
129 6 0.04
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.38
Consensus pattern (128 bp):
TAAAACAAGGCAATGTTTGATGTTTGGAAATTCAAGGAATCGTGCCCTATCGTGCTGGGTTTCGA
TTTCTCGTTTATTCAAAATAATCAAACATTCCTTTAGAATTTCACTCGTATTCTTCTAAATTC
Found at i:10099695 original size:28 final size:28
Alignment explanation
Indices: 10099637--10099695 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
10099627 AGATGGAATG
* *
10099637 ATTATTTAACTAGTAGACGAAGTATAAA
1 ATTATTTAACTAATAAACGAAGTATAAA
10099665 ATTATTTAACTACATAAAC-AA-TATAATA
1 ATTATTTAACTA-ATAAACGAAGTATAA-A
10099693 ATT
1 ATT
10099696 TTTCCTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 5 0.19
28 18 0.67
29 4 0.15
ACGTcount: A:0.49, C:0.08, G:0.07, T:0.36
Consensus pattern (28 bp):
ATTATTTAACTAATAAACGAAGTATAAA
Found at i:10103555 original size:26 final size:26
Alignment explanation
Indices: 10103526--10103578 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10103516 TTTACAGTTT
10103526 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
10103552 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
10103578 T
1 T
10103579 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:10104996 original size:36 final size:36
Alignment explanation
Indices: 10104932--10105010 Score: 142
Period size: 35 Copynumber: 2.2 Consensus size: 36
10104922 GTCCTTATAT
10104932 TTTTTTTCGTTTTGAGTAATTTAATTTTTTC-TTTA
1 TTTTTTTCGTTTTGAGTAATTTAATTTTTTCTTTTA
10104967 TTTTTTTCGTTTTGAGTAATTTAATTTTTTCTTTTA
1 TTTTTTTCGTTTTGAGTAATTTAATTTTTTCTTTTA
10105003 TGTTTTTT
1 T-TTTTTT
10105011 AACTTTTTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 31 0.74
36 5 0.12
37 6 0.14
ACGTcount: A:0.15, C:0.05, G:0.09, T:0.71
Consensus pattern (36 bp):
TTTTTTTCGTTTTGAGTAATTTAATTTTTTCTTTTA
Found at i:10106193 original size:123 final size:125
Alignment explanation
Indices: 10106032--10106257 Score: 368
Period size: 124 Copynumber: 1.8 Consensus size: 125
10106022 GTTTACCAAA
10106032 ATATTTAATATTATAACTCTTTGCCGGTGATAAAGATTCCATACATGTTT-TTTATATTAAAACA
1 ATATTTAATATTATAACTCTTTGCCGGTGATAAAGATTCCATACATGTTTATTT-TATTAAAACA
* *
10106096 TA-AATTTAATAAATAAATATGTAAAATGTTAAAATCATATGTTTGTTTTAATCTAAAAAT
65 TATAATTTAAAAAATAAATATATAAAATGTTAAAATCATATGTTTGTTTTAATCTAAAAAT
**
10106156 ATATTTAATATTATAACTCTTTG-TTGTGATAAAGATTCCATACATGTTTATTTTATTAAAACAT
1 ATATTTAATATTATAACTCTTTGCCGGTGATAAAGATTCCATACATGTTTATTTTATTAAAACAT
**
10106220 ATGTTTTAAAAAATAAATATATAAAATGTTAAAATCAT
66 ATAATTTAAAAAATAAATATATAAAATGTTAAAATCAT
10106258 TTTATTACCT
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
123 36 0.38
124 58 0.62
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (125 bp):
ATATTTAATATTATAACTCTTTGCCGGTGATAAAGATTCCATACATGTTTATTTTATTAAAACAT
ATAATTTAAAAAATAAATATATAAAATGTTAAAATCATATGTTTGTTTTAATCTAAAAAT
Found at i:10106710 original size:26 final size:26
Alignment explanation
Indices: 10106662--10106712 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
10106652 AACCAAATAA
*
10106662 CAATAGTATTAATTAAAAATAAATTC
1 CAATAGTATTAAATAAAAATAAATTC
* * *
10106688 CAATTGTATTAAATATAATTAAATT
1 CAATAGTATTAAATAAAAATAAATT
10106713 TAAGTTTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.39
Consensus pattern (26 bp):
CAATAGTATTAAATAAAAATAAATTC
Found at i:10107248 original size:77 final size:77
Alignment explanation
Indices: 10107117--10107271 Score: 247
Period size: 77 Copynumber: 2.0 Consensus size: 77
10107107 CCTATCATTC
* * * *
10107117 ATCTTAAAAATAATTTCGATATTCCTCCTGAAATATTGTTCATTCTTCCGCCTTTATACTTTGTT
1 ATCTTAAAAATAATTTCGATATTCCTCCTCAAATATTGTTCATTCTTCCACCTTTAAACTCTGTT
10107182 TCATACTTGTGG
66 TCATACTTGTGG
* * *
10107194 ATCTTCAAAATAATTTTGATATTGCTCCTCAAATATTGTTCATTCTTCCACCTTTAAACTCTGTT
1 ATCTTAAAAATAATTTCGATATTCCTCCTCAAATATTGTTCATTCTTCCACCTTTAAACTCTGTT
10107259 TCATACTTGTGG
66 TCATACTTGTGG
10107271 A
1 A
10107272 GTTGCGTGAA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
77 71 1.00
ACGTcount: A:0.26, C:0.20, G:0.10, T:0.45
Consensus pattern (77 bp):
ATCTTAAAAATAATTTCGATATTCCTCCTCAAATATTGTTCATTCTTCCACCTTTAAACTCTGTT
TCATACTTGTGG
Found at i:10123750 original size:13 final size:14
Alignment explanation
Indices: 10123734--10123769 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
10123724 CAATCTCATA
10123734 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
10123747 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
10123760 TCTC-ATTTCA
1 TCTCAATTTCA
10123770 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:10123759 original size:18 final size:19
Alignment explanation
Indices: 10123721--10123761 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
10123711 TGGTTCATGT
10123721 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
10123740 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
10123758 TTTC
1 TTTC
10123762 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:10123951 original size:39 final size:38
Alignment explanation
Indices: 10123884--10124018 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
10123874 ACCAATATGG
* * *
10123884 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
10123923 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
10123961 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
10124002 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
10124019 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:10124284 original size:18 final size:19
Alignment explanation
Indices: 10124258--10124296 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
10124248 TTTCAATTCA
10124258 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
10124277 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
10124295 AT
1 AT
10124297 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:10125628 original size:5 final size:5
Alignment explanation
Indices: 10125618--10125670 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
10125608 TTACTTATTT
* *
10125618 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
10125666 ATATA
1 ATATA
10125671 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:10125634 original size:12 final size:12
Alignment explanation
Indices: 10125617--10125672 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
10125607 TTTACTTATT
10125617 TATATAATATAA
1 TATATAATATAA
10125629 TATATAATATAATA
1 TATATAATAT-A-A
10125643 TACTATAATATAA
1 TA-TATAATATAA
*
10125656 TA-ATAATTTAA
1 TATATAATATAA
10125667 TATATA
1 TATATA
10125673 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:10126013 original size:27 final size:27
Alignment explanation
Indices: 10125975--10126027 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
10125965 TCGTTACAGG
*
10125975 TTGTGCCTATCTCAGAGGTGCAAATGA
1 TTGTGCCTATCTCAGAGGCGCAAATGA
10126002 TTGTGCCTATCTCAGAGGCGCAAATG
1 TTGTGCCTATCTCAGAGGCGCAAATG
10126028 GTAGGGCCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (27 bp):
TTGTGCCTATCTCAGAGGCGCAAATGA
Found at i:10129539 original size:33 final size:33
Alignment explanation
Indices: 10129497--10129577 Score: 108
Period size: 33 Copynumber: 2.5 Consensus size: 33
10129487 GCTTGAGCCA
* * *
10129497 GGAGGAGTGGAGTACGGCGATTGATACGGGTCG
1 GGAGGAGTGGAGTACGACAATTGATACGGGCCG
*
10129530 GGAGGAGTGGAGTACGACAATTGATACTGGCCG
1 GGAGGAGTGGAGTACGACAATTGATACGGGCCG
* *
10129563 GAAGGAGCGGAGTAC
1 GGAGGAGTGGAGTAC
10129578 TGAGGTAGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.26, C:0.14, G:0.44, T:0.16
Consensus pattern (33 bp):
GGAGGAGTGGAGTACGACAATTGATACGGGCCG
Found at i:10132226 original size:60 final size:62
Alignment explanation
Indices: 10132142--10132274 Score: 182
Period size: 60 Copynumber: 2.2 Consensus size: 62
10132132 ATACTAAACT
* * * * *
10132142 AAACAC-AACAATTTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTA-C
1 AAACACAAAAAATTTATAACATAATCCTAAATTACAAACAAATTAATTTTAAAATAATTATA
*
10132202 AAACACAAAAAATTT-TAACATAATCCTAAATTACAAACAAATTATTTTTAAAATAATTATA
1 AAACACAAAAAATTTATAACATAATCCTAAATTACAAACAAATTAATTTTAAAATAATTATA
*
10132263 AAAAACAAAAAA
1 AAACACAAAAAA
10132275 AATTACATTC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
60 46 0.72
61 18 0.28
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (62 bp):
AAACACAAAAAATTTATAACATAATCCTAAATTACAAACAAATTAATTTTAAAATAATTATA
Found at i:10132435 original size:19 final size:19
Alignment explanation
Indices: 10132391--10132438 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
10132381 CTTTTTTCAT
10132391 TCTTCTTCTTCTCTCCTTCC
1 TCTT-TTCTTCTCTCCTTCC
* *
10132411 TTTTTTCTTCTC-CTTTCTC
1 TCTTTTCTTCTCTCCTTC-C
10132430 TCTTTTCTT
1 TCTTTTCTT
10132439 TCCCTCTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 4 0.17
19 17 0.71
20 3 0.12
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (19 bp):
TCTTTTCTTCTCTCCTTCC
Found at i:10132602 original size:31 final size:31
Alignment explanation
Indices: 10132559--10132667 Score: 121
Period size: 32 Copynumber: 3.5 Consensus size: 31
10132549 GCTGAGTAGG
10132559 GGGCATGCATGCAGGCTGCAAGAGGACTGTTC
1 GGGCA-GCATGCAGGCTGCAAGAGGACTGTTC
* * * * *
10132591 GGGCAGTATGCAGG-TGCAGGGAGAACTATTT
1 GGGCAGCATGCAGGCTGCA-AGAGGACTGTTC
* *
10132622 GGGAAGCAGGCAGGCTGCAAGGAGGACTGTTC
1 GGGCAGCATGCAGGCTGCAA-GAGGACTGTTC
10132654 GGGCAGCATGCAGG
1 GGGCAGCATGCAGG
10132668 GCAGGTCATT
Statistics
Matches: 60, Mismatches: 14, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
30 4 0.07
31 27 0.45
32 29 0.48
ACGTcount: A:0.24, C:0.18, G:0.41, T:0.17
Consensus pattern (31 bp):
GGGCAGCATGCAGGCTGCAAGAGGACTGTTC
Found at i:10138262 original size:48 final size:48
Alignment explanation
Indices: 10138108--10138255 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
10138098 ATATATACAC
* * **
10138108 ATCTCATACATATTTCACATTAACCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** *
10138156 GGCTCATACATATTTCACATTAGCCTTTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
10138204 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
10138252 ATCT
1 ATCT
10138256 TGTACATCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:10139570 original size:26 final size:27
Alignment explanation
Indices: 10139525--10139577 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
10139515 TTAAATTCTG
* *
10139525 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
10139552 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
10139578 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:10139911 original size:21 final size:23
Alignment explanation
Indices: 10139878--10139920 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
10139868 ACCAGGATTT
10139878 ATTACACGAT-AAACTA-CAGCA
1 ATTACACGATAAAACTATCAGCA
* *
10139899 ATTACATGCTAAAACTATCAGC
1 ATTACACGATAAAACTATCAGC
10139921 CTTCAACAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.44
22 6 0.33
23 4 0.22
ACGTcount: A:0.44, C:0.23, G:0.09, T:0.23
Consensus pattern (23 bp):
ATTACACGATAAAACTATCAGCA
Found at i:10141236 original size:47 final size:46
Alignment explanation
Indices: 10141122--10141295 Score: 137
Period size: 46 Copynumber: 3.7 Consensus size: 46
10141112 GCATATCTGT
* * **
10141122 GCCGATGCCATGTCCTAGACATGGTCTTACACT-G-ACACATC-TTGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-CCTCATAATA
* *
10141168 GTCGATGCATGTCCTAGACATGTCTTACACTAGCACCCGTC-TCAATA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACCC-TCAT-AATA
* * *
10141215 -CCTATGCCATGTCCCAAACATGGTCTTACACT-G-ACTCTCATAATA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACCCTCATAATA
10141260 TGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 --GCCGATGCATGTCCCAGACATGTCTTACACTAGC
10141296 TCACAATAGC
Statistics
Matches: 105, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
44 10 0.10
45 22 0.21
46 29 0.28
47 29 0.28
48 15 0.14
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACCCTCATAATA
Found at i:10141237 original size:92 final size:93
Alignment explanation
Indices: 10141126--10141295 Score: 245
Period size: 94 Copynumber: 1.8 Consensus size: 93
10141116 ATCTGTGCCG
* * * * *
10141126 ATGCCATGTCCTAGACATGGTCTTACACTGACACATC-T-TGTAGTCGATGCATGTCCTAGACAT
1 ATGCCATGTCCCAAACATGGTCTTACACTGACAC-TCATATATAGCCGATGCATGTCCCAGACAT
10141189 GTCTTACACTAGCACCCGTCTCAATACCT
65 GTCTTACACTAGCACCCGTCTCAATACCT
* *
10141218 ATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATAATATGGCCGATGCATGTCCCAGACAT
1 ATGCCATGTCCCAAACATGGTCTTACACTGACACTCAT-ATATAGCCGATGCATGTCCCAGACAT
10141283 GTCTTACACTAGC
65 GTCTTACACTAGC
10141296 TCACAATAGC
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
91 2 0.03
92 32 0.47
94 34 0.50
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (93 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGACACTCATATATAGCCGATGCATGTCCCAGACATG
TCTTACACTAGCACCCGTCTCAATACCT
Found at i:10144579 original size:43 final size:43
Alignment explanation
Indices: 10144499--10144885 Score: 517
Period size: 43 Copynumber: 9.0 Consensus size: 43
10144489 ATATCGTACA
* * ** * *
10144499 ATGCCAACGTCCCAGACATGGTTTTACATGTAGTCACAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
* * *
10144542 ATGCC-ACTGTCCCAAACAG-GGTCTTATACATTATCACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACATAATCACATATCG
*
10144585 ATGCCAACATCCCAGACGTGGTCTTACACATAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
* *
10144628 ATGCCAACGTCCCAGATGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
* ** *
10144671 ATGCCAACGTCCTAGATATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
*
10144714 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
* * **
10144757 ATGCCAACATCCCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
*
10144800 ATGCCAACGTCCCAGATGTGGTCTTACACATAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
* * *
10144843 ATGCCAACATCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
10144886 TTTTAACCAT
Statistics
Matches: 307, Mismatches: 33, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
42 3 0.01
43 302 0.98
44 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACATAATCACATATCG
Found at i:10144723 original size:22 final size:22
Alignment explanation
Indices: 10144655--10144723 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
10144645 GTGGTCTTAC
10144655 ACGTAATCACATATCGATGCCA
1 ACGTAATCACATATCGATGCCA
** * * *
10144677 ACGTCCT-AGATAT-GGT-CTTA
1 ACGTAATCACATATCGATGC-CA
10144697 CACGTAATCACATATCGATGCCA
1 -ACGTAATCACATATCGATGCCA
10144720 ACGT
1 ACGT
10144724 CCCAGACGTG
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 1 0.03
20 3 0.09
21 10 0.31
22 14 0.44
23 3 0.09
24 1 0.03
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (22 bp):
ACGTAATCACATATCGATGCCA
Found at i:10144729 original size:129 final size:129
Alignment explanation
Indices: 10144499--10144885 Score: 587
Period size: 129 Copynumber: 3.0 Consensus size: 129
10144489 ATATCGTACA
* * * * * * *
10144499 ATGCCAACGTCCCAGACATGGTTTTACATGTAGTCACAAATCGATGCC-ACTGTCCCAAACAGGG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCAAC-GTCCCAGATATGG
* * *
10144563 TCTTATACATTATCACATATCGATGCCAACATCCCAGACGTGGTCTTACACATAATCACATATCG
65 TCTTACACATAATCACATATCGATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
10144628 ATGCCAACGTCCCAGATGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCTAGATATGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGATATGGT
* *
10144693 CTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
66 CTTACACATAATCACATATCGATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
10144757 ATGCCAACATCCCAAACGTGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGATGTGGT
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGATATGGT
*
10144822 CTTACACATAATCACATATCGATGCCAACATCCCAGACATGGTCTTACACGTAATCACATATCG
66 CTTACACATAATCACATATCGATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
10144886 TTTTAACCAT
Statistics
Matches: 233, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
129 231 0.99
130 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (129 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGATATGGT
CTTACACATAATCACATATCGATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:10146634 original size:15 final size:15
Alignment explanation
Indices: 10146526--10146635 Score: 91
Period size: 15 Copynumber: 7.3 Consensus size: 15
10146516 GACACACGAC
10146526 TGTGTAACATAGCCG
1 TGTGTAACATAGCCG
* * *
10146541 TGTGTCACACACGAC-
1 TGTGTAACATA-GCCG
10146556 TGTGTAACATAGCCG
1 TGTGTAACATAGCCG
* * *
10146571 TGTGTGACACACGAC-
1 TGTGTAACATA-GCCG
10146586 TGTGTAACATAGCCG
1 TGTGTAACATAGCCG
* * *
10146601 TGTGTCACACACGAC-
1 TGTGTAACATA-GCCG
10146616 TGTGTAACATAGCCG
1 TGTGTAACATAGCCG
10146631 TGTGT
1 TGTGT
10146636 GACACACGGC
Statistics
Matches: 71, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 6 0.08
15 59 0.83
16 6 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (15 bp):
TGTGTAACATAGCCG
Found at i:10146663 original size:30 final size:30
Alignment explanation
Indices: 10146516--10146643 Score: 238
Period size: 30 Copynumber: 4.3 Consensus size: 30
10146506 TACCCCAGGG
10146516 GACACACGACTGTGTAACATAGCCGTGTGT
1 GACACACGACTGTGTAACATAGCCGTGTGT
*
10146546 CACACACGACTGTGTAACATAGCCGTGTGT
1 GACACACGACTGTGTAACATAGCCGTGTGT
10146576 GACACACGACTGTGTAACATAGCCGTGTGT
1 GACACACGACTGTGTAACATAGCCGTGTGT
*
10146606 CACACACGACTGTGTAACATAGCCGTGTGT
1 GACACACGACTGTGTAACATAGCCGTGTGT
10146636 GACACACG
1 GACACACG
10146644 GCTGAGTCAC
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 94 1.00
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (30 bp):
GACACACGACTGTGTAACATAGCCGTGTGT
Found at i:10148890 original size:26 final size:25
Alignment explanation
Indices: 10148861--10148961 Score: 86
Period size: 23 Copynumber: 4.2 Consensus size: 25
10148851 CAGATTGTAT
10148861 GAGCTTACCGATATATCAGCTCGTAA
1 GAGCTTACCGAT-TATCAGCTCGTAA
* * *
10148887 GAGCTTA-CTATTCTCAGCTCGTAT
1 GAGCTTACCGATTATCAGCTCGTAA
* * *
10148911 GAGCTTA-CTATT-TCAGCTCATTA
1 GAGCTTACCGATTATCAGCTCGTAA
* *
10148934 GAGCTTACTG-TT-TCAGCTCGTTA
1 GAGCTTACCGATTATCAGCTCGTAA
10148957 GAGCT
1 GAGCT
10148962 AACTGTCCAT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
23 32 0.49
24 23 0.35
25 3 0.05
26 7 0.11
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.35
Consensus pattern (25 bp):
GAGCTTACCGATTATCAGCTCGTAA
Found at i:10148967 original size:23 final size:23
Alignment explanation
Indices: 10148876--10148961 Score: 120
Period size: 23 Copynumber: 3.7 Consensus size: 23
10148866 TACCGATATA
*
10148876 TCAGCTCGTAAGAGCTTACTATT
1 TCAGCTCGTTAGAGCTTACTATT
10148899 CTCAGCTCG-TATGAGCTTACTATT
1 -TCAGCTCGTTA-GAGCTTACTATT
* *
10148923 TCAGCTCATTAGAGCTTACTGTT
1 TCAGCTCGTTAGAGCTTACTATT
10148946 TCAGCTCGTTAGAGCT
1 TCAGCTCGTTAGAGCT
10148962 AACTGTCCAT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
23 34 0.61
24 22 0.39
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (23 bp):
TCAGCTCGTTAGAGCTTACTATT
Found at i:10152563 original size:17 final size:17
Alignment explanation
Indices: 10152543--10152576 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10152533 AATAAATTAT
*
10152543 AAATGAATAAAAATATA
1 AAATAAATAAAAATATA
*
10152560 AAATAAATACAAATATA
1 AAATAAATAAAAATATA
10152577 CCTTAATAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (17 bp):
AAATAAATAAAAATATA
Found at i:10152994 original size:27 final size:27
Alignment explanation
Indices: 10152956--10153021 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
10152946 CTGCAAAGTG
*
10152956 GGTGCCGTCTCTAACAGCCCCTCCACC
1 GGTGCCGCCTCTAACAGCCCCTCCACC
* **
10152983 GGTGCCGCCTCTGACATTCCCTCCACC
1 GGTGCCGCCTCTAACAGCCCCTCCACC
10153010 GGTGCCGCCTCT
1 GGTGCCGCCTCT
10153022 TTTCTAGGCG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.11, C:0.47, G:0.21, T:0.21
Consensus pattern (27 bp):
GGTGCCGCCTCTAACAGCCCCTCCACC
Found at i:10157053 original size:21 final size:21
Alignment explanation
Indices: 10156999--10157042 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
10156989 TATTAATTGC
10156999 TTAAAAATTTAAAATTTATAT
1 TTAAAAATTTAAAATTTATAT
10157020 TTAAAAATTTAAAATTTATAT
1 TTAAAAATTTAAAATTTATAT
10157041 TT
1 TT
10157043 CATATATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TTAAAAATTTAAAATTTATAT
Found at i:10162925 original size:24 final size:24
Alignment explanation
Indices: 10162888--10162934 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
10162878 AACATGGACC
* *
10162888 GATTCTATGTTGATATAATGAATT
1 GATTCGATGCTGATATAATGAATT
*
10162912 GATTCGATGCTGATATAGTGAAT
1 GATTCGATGCTGATATAATGAAT
10162935 AGTTGATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.40
Consensus pattern (24 bp):
GATTCGATGCTGATATAATGAATT
Found at i:10167112 original size:19 final size:19
Alignment explanation
Indices: 10167090--10167151 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
10167080 AAATAGAAGA
10167090 AAACTAAAATATTATATAG
1 AAACTAAAATATTATATAG
*
10167109 AAACTTTAAAA-A-TAGA-AG
1 AAAC--TAAAATATTATATAG
10167127 AAAACTAAAATATTATATAG
1 -AAACTAAAATATTATATAG
10167147 AAACT
1 AAACT
10167152 TTAACAAGAC
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
17 5 0.14
18 3 0.09
19 19 0.54
20 3 0.09
21 5 0.14
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.27
Consensus pattern (19 bp):
AAACTAAAATATTATATAG
Found at i:10167129 original size:38 final size:38
Alignment explanation
Indices: 10167078--10167155 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
10167068 TTTTTACCAA
10167078 AAAAATAGAAGAAAACTAAAATATTATATAGAAACTTT
1 AAAAATAGAAGAAAACTAAAATATTATATAGAAACTTT
10167116 AAAAATAGAAGAAAACTAAAATATTATATAGAAACTTT
1 AAAAATAGAAGAAAACTAAAATATTATATAGAAACTTT
10167154 AA
1 AA
10167156 CAAGACCAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.62, C:0.05, G:0.08, T:0.26
Consensus pattern (38 bp):
AAAAATAGAAGAAAACTAAAATATTATATAGAAACTTT
Found at i:10174684 original size:21 final size:21
Alignment explanation
Indices: 10174658--10174698 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10174648 ATCTGCTCAA
* *
10174658 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
10174679 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
10174699 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:10185843 original size:74 final size:73
Alignment explanation
Indices: 10185747--10185967 Score: 193
Period size: 74 Copynumber: 3.1 Consensus size: 73
10185737 TGCGAAAGAG
* * *
10185747 TTTGTGCCCAGCGCTAGTCGGATAAACCGACGAATAATTAGTGAGCCTAGCTCTAGTTGGATAAA
1 TTTGTGCCTAACGATAGTCGGATAAACCGACGAATAATTAGTGAGCC-AGCTCTAGTTGGATAAA
10185812 CTAACAATA
65 CTAACAATA
** * * * * * * **
10185821 TTTGTGCCTAACTCTTGTCGGATAAACCGATGAAT--GTA-TG-CCCAACACTAGTCAGAT-AAC
1 TTTGTGCCTAACGATAGTCGGATAAACCGACGAATAATTAGTGAGCCAGCTCTAGTTGGATAAAC
*
10185881 TGACGAA-A
66 TAAC-AATA
* * *
10185889 GTTGTGCCTAGCGATAGTCGGATAAACCAACGAATAATTTAGTGAGTCCAGCTCTAGTTGGATAA
1 TTTGTGCCTAACGATAGTCGGATAAACCGACGAATAA-TTAGTGAG-CCAGCTCTAGTTGGATAA
* *
10185954 ACCAACGATA
64 ACTAACAATA
10185964 TTTG
1 TTTG
10185968 CGCCCAGTGC
Statistics
Matches: 109, Mismatches: 29, Indels: 17
0.70 0.19 0.11
Matches are distributed among these distances:
68 35 0.32
69 12 0.11
70 2 0.02
71 4 0.04
72 4 0.04
74 43 0.39
75 9 0.08
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (73 bp):
TTTGTGCCTAACGATAGTCGGATAAACCGACGAATAATTAGTGAGCCAGCTCTAGTTGGATAAAC
TAACAATA
Found at i:10189142 original size:29 final size:30
Alignment explanation
Indices: 10189082--10189143 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 30
10189072 TTTTATTTTA
*
10189082 TTGTTAATTTTCTTATTATTTTAAAGGTAT
1 TTGTTAATTTTCTTATTATTTTAAAGGCAT
10189112 TTGTTAATTTT-TTATTATTTTAGAA-GCAT
1 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
10189141 TTG
1 TTG
10189144 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAAGGCAT
Found at i:10190769 original size:138 final size:138
Alignment explanation
Indices: 10190521--10190773 Score: 382
Period size: 138 Copynumber: 1.8 Consensus size: 138
10190511 TTTGACATGA
* * * *
10190521 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATTTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
** *
10190586 CATGATCTTATTCATTTCATGTCACGTTACCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
66 CATGATCTTACACATTTCATATCACGTTACCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
10190651 TGTCACGC
131 TGTCACGC
* *
10190659 TGCCATGGTATCTTTCAACCT-TGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATAGTATCTTTCAA-CTATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAA
* * *
10190723 CCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATG
65 CCATGATCTTACACATTTCATATCACGTTACCATGGTATCTTTCAACCATG
10190774 CCACGGTATC
Statistics
Matches: 102, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
138 100 0.98
139 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.42
Consensus pattern (138 bp):
TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
CATGATCTTACACATTTCATATCACGTTACCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
TGTCACGC
Found at i:10190781 original size:21 final size:21
Alignment explanation
Indices: 10190751--10190794 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
10190741 CATATCATGT
*
10190751 TGCCATGGTATCTTTCAACCA
1 TGCCACGGTATCTTTCAACCA
10190772 TGCCACGGTATCTTTCAACCA
1 TGCCACGGTATCTTTCAACCA
10190793 TG
1 TG
10190795 GTCTTACACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.32
Consensus pattern (21 bp):
TGCCACGGTATCTTTCAACCA
Found at i:10190782 original size:67 final size:67
Alignment explanation
Indices: 10190705--10190840 Score: 254
Period size: 67 Copynumber: 2.0 Consensus size: 67
10190695 CCCGTCATGT
*
10190705 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
1 TGCCACGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
10190770 CA
66 CA
*
10190772 TGCCACGGTATCTTTCAACCATGGTCTTACACATTTCATATTATGTTGCCATGGTATCTTTCAAC
1 TGCCACGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
10190837 CA
66 CA
10190839 TG
1 TG
10190841 GTCTTACATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.38
Consensus pattern (67 bp):
TGCCACGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
CA
Found at i:10190788 original size:46 final size:46
Alignment explanation
Indices: 10190516--10190773 Score: 347
Period size: 46 Copynumber: 5.6 Consensus size: 46
10190506 TTATCTTTGA
* * * * *
10190516 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
* *
10190562 CATTTTGCCATGGTATCTTTCAACCATGATCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* *
10190608 CACGTTACCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * * **
10190654 CACGCTGCCATGGTATCTTTCAACCTTGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
** *
10190700 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
10190746 CATGTTGCCATGGTATCTTTCAACCATG
1 CATGTTGCCATGGTATCTTTCAACCATG
10190774 CCACGGTATC
Statistics
Matches: 187, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 4 0.02
46 183 0.98
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:10192148 original size:14 final size:11
Alignment explanation
Indices: 10192088--10192143 Score: 67
Period size: 11 Copynumber: 4.9 Consensus size: 11
10192078 CTTTATATAC
* *
10192088 TAATAAAACAA
1 TAATAAAATAT
10192099 TAATAAAATATCT
1 TAATAAAATA--T
*
10192112 TATTAAAATAT
1 TAATAAAATAT
10192123 TAATAAAATAT
1 TAATAAAATAT
10192134 TAATAAAATA
1 TAATAAAATA
10192144 ATATTTATCT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
11 30 0.77
13 9 0.23
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:10195129 original size:46 final size:46
Alignment explanation
Indices: 10195070--10195236 Score: 219
Period size: 46 Copynumber: 3.6 Consensus size: 46
10195060 TTGACATGAC
* * *
10195070 GCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCATGTT
* * *
10195116 GCCATGGTATCTTTCAACCATGGTCTTATTCA-ATTCATGTCACGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACTCATTTTC-TGTCATGTT
* * * *
10195162 GCCATGGTATCTTTCAATCATGGTCTTATTCATTTCCCGTCATGTT
1 GCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCATGTT
*
10195208 TCCATGGTATCTTTCAACCATGGTCTTAC
1 GCCATGGTATCTTTCAACCATGGTCTTAC
10195237 ATATTTCATT
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
45 3 0.03
46 100 0.95
47 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (46 bp):
GCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCATGTT
Found at i:10196999 original size:24 final size:22
Alignment explanation
Indices: 10196969--10197027 Score: 82
Period size: 24 Copynumber: 2.6 Consensus size: 22
10196959 CTTTATATAC
10196969 TAATAAAATAATAATAAAATATCT
1 TAATAAAATAATAATAAAATA--T
* *
10196993 TATTAAAATATTAATAAAATAT
1 TAATAAAATAATAATAAAATAT
10197015 TAATAAAATAATA
1 TAATAAAATAATA
10197028 TTGATCTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 12 0.39
24 19 0.61
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
TAATAAAATAATAATAAAATAT
Found at i:10197029 original size:14 final size:11
Alignment explanation
Indices: 10196969--10197024 Score: 76
Period size: 11 Copynumber: 4.9 Consensus size: 11
10196959 CTTTATATAC
*
10196969 TAATAAAATAA
1 TAATAAAATAT
10196980 TAATAAAATATCT
1 TAATAAAATA--T
*
10196993 TATTAAAATAT
1 TAATAAAATAT
10197004 TAATAAAATAT
1 TAATAAAATAT
10197015 TAATAAAATA
1 TAATAAAATA
10197025 ATATTGATCT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
11 31 0.77
13 9 0.22
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:10205806 original size:24 final size:25
Alignment explanation
Indices: 10205767--10205817 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
10205757 AAGAATAATT
*
10205767 TGAATATTTGATATTGCCTAATAAA
1 TGAATATTCGATATTGCCTAATAAA
* *
10205792 TGAATA-TCGATATTGCTTAGTAAA
1 TGAATATTCGATATTGCCTAATAAA
10205816 TG
1 TG
10205818 TCAAGCCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (25 bp):
TGAATATTCGATATTGCCTAATAAA
Found at i:10211658 original size:43 final size:42
Alignment explanation
Indices: 10211600--10211751 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 42
10211590 TCCCGACGTA
* *
10211600 GTCTTACATGTAATCAAATATCGATGCCATTGTCCCAAACAGG
1 GTCTTACATGAAATCAAATATCGATGCCA-TGTCCCAGACAGG
* *
10211643 GTCTTACACGAAATCAAATA-CGATGCCGATGTCCCAGACATG
1 GTCTTACATGAAATCAAATATCGATGCC-ATGTCCCAGACAGG
* *
10211685 GTCTTACATGTAAATCATAA-GTCGATGCCAACGTCCCAGAC-GTG
1 GTCTTACATG-AAATCA-AATATCGATGCC-ATGTCCCAGACAG-G
* *
10211729 GTCTTACATGAAAACACATATCG
1 GTCTTACATGAAATCAAATATCG
10211752 GATCCTATGT
Statistics
Matches: 91, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
42 28 0.31
43 33 0.36
44 30 0.33
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (42 bp):
GTCTTACATGAAATCAAATATCGATGCCATGTCCCAGACAGG
Found at i:10211721 original size:44 final size:42
Alignment explanation
Indices: 10211581--10211738 Score: 160
Period size: 42 Copynumber: 3.7 Consensus size: 42
10211571 AGCTCATACA
* *
10211581 ATGCCAACGTCCC-GACGTAGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAATC-AA-ATCG
** * * *
10211623 ATGCCATTGTCCCAAACAGGGTCTTACACG-AAATCAAATACG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCAAAT-CG
* *
10211665 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCATAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCA-AA-TCG
*
10211709 ATGCCAACGTCCCAGACGTGGTCTTACATG
1 ATGCCAACGTCCCAGACATGGTCTTACATG
10211739 AAAACACATA
Statistics
Matches: 95, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 40 0.42
43 21 0.22
44 31 0.33
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAAATCAAATCG
Found at i:10215616 original size:17 final size:17
Alignment explanation
Indices: 10215571--10215622 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
10215561 GGTATTTTTA
*
10215571 ACACAAATATGAAATT-
1 ACACAAATATTAAATTC
* *
10215587 AAAAAAATGATTAAATTC
1 ACACAAAT-ATTAAATTC
10215605 ACACAAATATTATAATTC
1 ACACAAATATTA-AATTC
10215623 TTGAAACTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 6 0.21
17 11 0.39
18 11 0.39
ACGTcount: A:0.56, C:0.12, G:0.04, T:0.29
Consensus pattern (17 bp):
ACACAAATATTAAATTC
Found at i:10217562 original size:20 final size:20
Alignment explanation
Indices: 10217515--10217565 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
10217505 TTTAATATAT
10217515 AATTAATATGATTTAAATTA
1 AATTAATATGATTTAAATTA
**
10217535 AAAAAATATG-TTTAAATTTA
1 AATTAATATGATTTAAA-TTA
*
10217555 ATTTAATATGA
1 AATTAATATGA
10217566 GTCGCACGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (20 bp):
AATTAATATGATTTAAATTA
Found at i:10224485 original size:21 final size:20
Alignment explanation
Indices: 10224431--10224486 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
10224421 CCGCCAGGCT
*
10224431 AGCTTTTTTTTTTTAGATTC
1 AGCTTTTTTTTTTCAGATTC
* *
10224451 AGCTTCTTTTTTTCAGTTTC
1 AGCTTTTTTTTTTCAGATTC
10224471 AGCCTTTTTTTTTTCA
1 AG-CTTTTTTTTTTCA
10224487 ACAATTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 19 0.61
21 12 0.39
ACGTcount: A:0.12, C:0.16, G:0.09, T:0.62
Consensus pattern (20 bp):
AGCTTTTTTTTTTCAGATTC
Found at i:10229412 original size:6 final size:6
Alignment explanation
Indices: 10229401--10229427 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10229391 ATGCCATGCC
10229401 AGCATT AGCATT AGCATT AGCATT AGC
1 AGCATT AGCATT AGCATT AGCATT AGC
10229428 TTCACATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (6 bp):
AGCATT
Found at i:10231776 original size:18 final size:18
Alignment explanation
Indices: 10231753--10231789 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
10231743 ACTAGTCATT
*
10231753 TAGTTTCCTTATCTTGCG
1 TAGTTTCCTTATCTCGCG
10231771 TAGTTTCCTTATCTCGCG
1 TAGTTTCCTTATCTCGCG
10231789 T
1 T
10231790 GAGTCAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.24, G:0.16, T:0.49
Consensus pattern (18 bp):
TAGTTTCCTTATCTCGCG
Found at i:10237672 original size:20 final size:20
Alignment explanation
Indices: 10237649--10237696 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
10237639 TAAATTCTAA
*
10237649 AAAGATAAATACAA-TTAATT
1 AAAGATAAATA-AAGATAATT
10237669 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
10237689 AAA-ATAAA
1 AAAGATAAA
10237697 ATCCTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:10237721 original size:27 final size:26
Alignment explanation
Indices: 10237691--10237752 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
10237681 AGATAATTAA
10237691 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
10237718 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
10237745 AATAAAAT
1 AATAAAAT
10237753 GGAGTCTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 18 0.62
28 9 0.31
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:10252143 original size:14 final size:13
Alignment explanation
Indices: 10252137--10252171 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
10252127 TTTTAAAAGT
10252137 TTTTTTTTTGGAAA
1 TTTTTTTTT-GAAA
10252151 TTTTTTTTTGAAA
1 TTTTTTTTTGAAA
10252164 TTTTTTTT
1 TTTTTTTT
10252172 CATATGACTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (13 bp):
TTTTTTTTTGAAA
Found at i:10252145 original size:16 final size:15
Alignment explanation
Indices: 10252126--10252171 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 15
10252116 CTATTTATAA
10252126 TTTTT-AAAAGTTTTT
1 TTTTTGAAAA-TTTTT
*
10252141 TTTTTGGAAA-TTTT
1 TTTTTGAAAATTTTT
10252155 TTTTTG-AAATTTTT
1 TTTTTGAAAATTTTT
10252169 TTT
1 TTT
10252172 CATATGACTC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 3 0.11
14 17 0.61
15 5 0.18
16 3 0.11
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.70
Consensus pattern (15 bp):
TTTTTGAAAATTTTT
Found at i:10252373 original size:37 final size:37
Alignment explanation
Indices: 10252323--10252397 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
10252313 CCACCCATTC
10252323 TTGTATCAAGAAGTAGAAAGGTGATGGGTGGTACTGG
1 TTGTATCAAGAAGTAGAAAGGTGATGGGTGGTACTGG
10252360 TTGTATCAAGAAGTAGAAAGGTGATGGGTGGTACTGG
1 TTGTATCAAGAAGTAGAAAGGTGATGGGTGGTACTGG
10252397 T
1 T
10252398 GGGACTACGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.05, G:0.37, T:0.28
Consensus pattern (37 bp):
TTGTATCAAGAAGTAGAAAGGTGATGGGTGGTACTGG
Found at i:10252663 original size:23 final size:23
Alignment explanation
Indices: 10252636--10252683 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
10252626 TTTCTAACTT
10252636 GTAATTTGATTTTTGTTAGAGGG
1 GTAATTTGATTTTTGTTAGAGGG
10252659 GTAATTTGATTTTTGTTAGAGGG
1 GTAATTTGATTTTTGTTAGAGGG
10252682 GT
1 GT
10252684 TGAGTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (23 bp):
GTAATTTGATTTTTGTTAGAGGG
Found at i:10254485 original size:28 final size:28
Alignment explanation
Indices: 10254419--10254486 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 28
10254409 ATCTATTTAA
*
10254419 TATATATATATTTTCTTTTCAAATCTAT
1 TATATATATATTCTCTTTTCAAATCTAT
** * * *
10254447 TAGGTAAATATTCTCTTTT-AAATTTTTT
1 TATATATATATTCTCTTTTCAAA-TCTAT
10254475 TATATATATATT
1 TATATATATATT
10254487 TTTAAATTTA
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
27 3 0.10
28 27 0.90
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.57
Consensus pattern (28 bp):
TATATATATATTCTCTTTTCAAATCTAT
Found at i:10255811 original size:26 final size:26
Alignment explanation
Indices: 10255761--10255812 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
10255751 TATATGTATT
*
10255761 AAAATATATACGTAATAATAGAAATA
1 AAAATATATACGTAATAATAAAAATA
* * *
10255787 AAAATGTATACGTAGTATTAAAAATA
1 AAAATATATACGTAATAATAAAAATA
10255813 TATACATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (26 bp):
AAAATATATACGTAATAATAAAAATA
Found at i:10256116 original size:44 final size:44
Alignment explanation
Indices: 10256056--10256158 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 44
10256046 CAATATAGAC
* * *
10256056 AAAAATATATACATAATGT-AGTATTGAAAATATTTACATAATAT
1 AAAAATATATACATAATATGA-TATTAAAAATATATACATAATAT
10256100 AAAAATATATGA-ATAATATGATATTAAAAATATATACATAAAAATAT
1 AAAAATATAT-ACATAATATGATATTAAAAATATATACAT---AATAT
10256147 AATAAATATATA
1 AA-AAATATATA
10256159 TAATATATAT
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
44 32 0.64
45 2 0.04
47 8 0.16
48 8 0.16
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (44 bp):
AAAAATATATACATAATATGATATTAAAAATATATACATAATAT
Found at i:10256140 original size:25 final size:24
Alignment explanation
Indices: 10256056--10256172 Score: 86
Period size: 25 Copynumber: 5.0 Consensus size: 24
10256046 CAATATAGAC
*
10256056 AAAAATATATACATAATGTAGTATT
1 AAAAATATATACATAATATA-TATT
* *
10256081 GAAAATATTTAC---ATA-ATA-T
1 AAAAATATATACATAATATATATT
10256100 AAAAATATATGA-ATAATATGATATT
1 AAAAATATAT-ACATAATAT-ATATT
* *
10256125 AAAAATATATACATAAAAATATAAT
1 AAAAATATATACAT-AATATATATT
*
10256150 AAATATATATA-ATATATATATAT
1 AAAAATATATACATA-ATATATAT
10256173 AATGTATAAA
Statistics
Matches: 72, Mismatches: 10, Indels: 21
0.70 0.10 0.20
Matches are distributed among these distances:
19 9 0.12
20 3 0.04
21 1 0.01
22 5 0.07
23 1 0.01
24 12 0.17
25 37 0.51
26 4 0.06
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (24 bp):
AAAAATATATACATAATATATATT
Found at i:10256166 original size:11 final size:11
Alignment explanation
Indices: 10256128--10256194 Score: 61
Period size: 11 Copynumber: 6.4 Consensus size: 11
10256118 TGATATTAAA
*
10256128 AATATATACAT
1 AATATATATAT
*
10256139 AA-AAATATAAT
1 AATATATAT-AT
10256150 AA-ATATATAT
1 AATATATATAT
10256160 AATATATATAT
1 AATATATATAT
*
10256171 -ATA-ATGTAT
1 AATATATATAT
*
10256180 AAAATATATAT
1 AATATATATAT
10256191 AATA
1 AATA
10256195 CATACACATT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
9 5 0.11
10 13 0.29
11 27 0.60
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (11 bp):
AATATATATAT
Found at i:10256180 original size:13 final size:13
Alignment explanation
Indices: 10256143--10256180 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
10256133 ATACATAAAA
*
10256143 ATATAATAAATAT
1 ATATAATATATAT
10256156 ATATAATATATAT
1 ATATAATATATAT
*
10256169 ATATAATGTATA
1 ATATAATATATA
10256181 AAATATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (13 bp):
ATATAATATATAT
Found at i:10257983 original size:45 final size:45
Alignment explanation
Indices: 10257927--10258012 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
10257917 CGATATCTAC
*
10257927 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGT
*
10257972 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAAAT
10258013 TTGCTTCTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGT
Found at i:10258461 original size:205 final size:204
Alignment explanation
Indices: 10258106--10258616 Score: 693
Period size: 205 Copynumber: 2.5 Consensus size: 204
10258096 AAATCTGCTT
* * * *
10258106 CTTCGATTTGTTCCCTGAAAAAACAGAGATGCAAAATCATCTTAGATTTGCTTTAACTTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGC-AAATCATCTTAGATTTGCTTTAACGTAAGCAC
* * * * * *
10258171 GTGAAAGCCTAATCAGCTACGTCTTTGATTTGCTCCTTGTAAGCACAATGATGCTAAACCATCTT
65 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * * * *
10258236 GGATCTGCTTCAGTATAAACATCTGAAGGTTG-GATCTGCTATGTGTCTAC-CATCCATCGAAGT
130 GGATCTACTTCAGCATAAACATCTGAAGG-TGAGATCTACTATGTATCTACTC-TCCATCAAAGT
*
10258299 GGAGATGCCAGA
193 AGAGATGCCAGA
10258311 CTTCGATTTGTTCTCTGACAATACAGAGATGCGAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGC-AAATCATCTTAGATTTGCTTTAACGTAAGCAC
*
10258376 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAACCATCTT
65 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * *
10258441 GGATCTACTTCAGCATAAACATCTGAAGGTGAGATCTACTATGTATCTGCTCTCTATTAAAGTAG
130 GGATCTACTTCAGCATAAACATCTGAAGGTGAGATCTACTATGTATCTACTCTCCATCAAAGTAG
10258506 AGATGCCAGA
195 AGATGCCAGA
* * * * * * **
10258516 CTTCGATTTGTTCTCTGACACTACAGAGACGACAAATCACCTTGGATTTGCTTCATCGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATG-CAAATCATCTTAGATTTGCTTTAACGTAAGCAC
* *
10258581 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCC
65 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCC
10258617 ACGCTGAATA
Statistics
Matches: 271, Mismatches: 32, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
204 2 0.01
205 267 0.99
206 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (204 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCAAATCATCTTAGATTTGCTTTAACGTAAGCACG
TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTG
GATCTACTTCAGCATAAACATCTGAAGGTGAGATCTACTATGTATCTACTCTCCATCAAAGTAGA
GATGCCAGA
Found at i:10269086 original size:26 final size:26
Alignment explanation
Indices: 10269036--10269087 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
10269026 TATATGTATT
*
10269036 AAAATATATACGTAATAATAGAAATA
1 AAAATATATACGTAATAATAAAAATA
* * *
10269062 AAAATGTATACGTAGTATTAAAAATA
1 AAAATATATACGTAATAATAAAAATA
10269088 TATACATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (26 bp):
AAAATATATACGTAATAATAAAAATA
Found at i:10269381 original size:20 final size:20
Alignment explanation
Indices: 10269356--10269452 Score: 79
Period size: 20 Copynumber: 4.5 Consensus size: 20
10269346 TGTAGTATTG
*
10269356 AAAATATTTACATAATATAA
1 AAAATATATACATAATATAA
10269376 AAAATATATGA-ATAATATGATATTA
1 AAAATATAT-ACAT-A-AT-ATA--A
10269401 AAAATATATACATAAAATATAA
1 AAAATATATACAT--AATATAA
* * *
10269423 TAAATATATATATAATATAT
1 AAAATATATACATAATATAA
10269443 AAAATATATA
1 AAAATATATA
10269453 TATATAATAC
Statistics
Matches: 64, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
20 25 0.39
21 2 0.03
22 14 0.22
23 3 0.05
24 4 0.06
25 14 0.22
26 2 0.03
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (20 bp):
AAAATATATACATAATATAA
Found at i:10269384 original size:11 final size:11
Alignment explanation
Indices: 10269370--10269454 Score: 64
Period size: 11 Copynumber: 7.5 Consensus size: 11
10269360 TATTTACATA
10269370 ATATAAAAAAT
1 ATATAAAAAAT
*
10269381 ATATGAATAATAT
1 ATAT-AA-AAAAT
*
10269394 GATATTAAAAAT
1 -ATATAAAAAAT
*
10269406 ATATACATAAA-
1 ATATA-AAAAAT
*
10269417 ATATAATAAAT
1 ATATAAAAAAT
* *
10269428 ATATATATAAT
1 ATATAAAAAAT
*
10269439 ATATAAAATAT
1 ATATAAAAAAT
10269450 ATATA
1 ATATA
10269455 TATAATACAT
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
10 5 0.09
11 34 0.59
12 10 0.17
13 5 0.09
14 4 0.07
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.35
Consensus pattern (11 bp):
ATATAAAAAAT
Found at i:10269415 original size:45 final size:44
Alignment explanation
Indices: 10269317--10269461 Score: 136
Period size: 45 Copynumber: 3.2 Consensus size: 44
10269307 TAAAAGTATG
* * *
10269317 TATACAT-ATAGACAAAAATATATACATAATGTAGTATTGAAAATA
1 TATACATAATATA-AAAAATATATACATAATATA-TATTAAAAATA
*
10269362 TTTACATAATATAAAAAATATATGA-ATAATATGATATTAAAAATA
1 TATACATAATATAAAAAATATAT-ACATAATAT-ATATTAAAAATA
* * *
10269407 TATACATAAAATATAATAAATATATATATAATATATA--AAATATA
1 TATACAT--AATATAAAAAATATATACATAATATATATTAAAAATA
*
10269451 TATATATAATA
1 TATACATAATA
10269462 CATACACATT
Statistics
Matches: 86, Mismatches: 8, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
42 4 0.05
44 12 0.14
45 38 0.44
46 10 0.12
47 22 0.26
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.35
Consensus pattern (44 bp):
TATACATAATATAAAAAATATATACATAATATATATTAAAAATA
Found at i:10269453 original size:20 final size:21
Alignment explanation
Indices: 10269317--10269461 Score: 107
Period size: 22 Copynumber: 6.5 Consensus size: 21
10269307 TAAAAGTATG
* *
10269317 TATACAT-ATAGACAAAAATA
1 TATACATAATATATAAAAATA
*
10269337 TATACATAATGTAGTATTGAAAATA
1 TATACATAA--TA-TA-TAAAAATA
*
10269362 TTTACATAATATA-AAAAATA
1 TATACATAATATATAAAAATA
10269382 TATGA-ATAATATGATATTAAAAATA
1 TAT-ACAT-A-AT-ATA-TAAAAATA
*
10269407 TATACATAAAATATAATAAATA
1 TATACATAATATATAA-AAATA
*
10269429 TATATATAATATATAAAATATA
1 TATACATAATATATAAAA-ATA
*
10269451 TATATATAATA
1 TATACATAATA
10269462 CATACACATT
Statistics
Matches: 102, Mismatches: 9, Indels: 26
0.74 0.07 0.19
Matches are distributed among these distances:
20 17 0.17
21 8 0.08
22 40 0.39
23 8 0.08
24 3 0.03
25 26 0.25
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.35
Consensus pattern (21 bp):
TATACATAATATATAAAAATA
Found at i:10276348 original size:29 final size:29
Alignment explanation
Indices: 10276297--10276363 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
10276287 CACCCTTGTC
10276297 CCTCACCTCTCCCCCACCATCTC-CCCTCCT
1 CCTC-CCTCTCCCCCACCATCTCTCCCT-CT
* * *
10276327 CCTCCCTCTTCCCGACCGTCTCTCCCTCT
1 CCTCCCTCTCCCCCACCATCTCTCCCTCT
10276356 CCTCCCTC
1 CCTCCCTC
10276364 CCTTTCCATC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 25 0.76
30 8 0.24
ACGTcount: A:0.06, C:0.64, G:0.03, T:0.27
Consensus pattern (29 bp):
CCTCCCTCTCCCCCACCATCTCTCCCTCT
Found at i:10276513 original size:6 final size:6
Alignment explanation
Indices: 10276502--10276547 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
10276492 GGAAAAGATG
*
10276502 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA G-GGGG GAGGG
1 GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGGA GAGGG
10276548 TTTTATTAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
5 4 0.11
6 34 0.89
ACGTcount: A:0.28, C:0.00, G:0.72, T:0.00
Consensus pattern (6 bp):
GAGGGA
Found at i:10280875 original size:30 final size:28
Alignment explanation
Indices: 10280810--10280876 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 28
10280800 TCTGTTTCTA
*
10280810 ATTTTTAATAAAATTAAATATTTCTTAT
1 ATTTTTATTAAAATTAAATATTTCTTAT
10280838 ATTTTTATTAAAAATT-AATAATTT-TTAT
1 ATTTTTATT-AAAATTAAAT-ATTTCTTAT
10280866 AGCTTTTTATT
1 A--TTTTTATT
10280877 TTTATCATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
28 16 0.47
29 10 0.29
30 8 0.24
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (28 bp):
ATTTTTATTAAAATTAAATATTTCTTAT
Found at i:10285586 original size:43 final size:43
Alignment explanation
Indices: 10285525--10285609 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
10285515 CTCCAAGAAG
10285525 TATGTATCTTTAATCTACTTTGTACGTCTATGATAGTTTCCTA
1 TATGTATCTTTAATCTACTTTGTACGTCTATGATAGTTTCCTA
* *
10285568 TATGTATCTTTAATCTACTTTGTAGGTCTATGATATTTTCCT
1 TATGTATCTTTAATCTACTTTGTACGTCTATGATAGTTTCCT
10285610 TTAACTGATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.22, C:0.15, G:0.12, T:0.51
Consensus pattern (43 bp):
TATGTATCTTTAATCTACTTTGTACGTCTATGATAGTTTCCTA
Found at i:10303316 original size:20 final size:20
Alignment explanation
Indices: 10303293--10303335 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
10303283 GAAATTCTAA
* *
10303293 AAAGATAAATACAATTAATT
1 AAAGATAAATAAAAATAATT
*
10303313 AAAGATAATTAAAAATAATT
1 AAAGATAAATAAAAATAATT
10303333 AAA
1 AAA
10303336 ATTAAATCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (20 bp):
AAAGATAAATAAAAATAATT
Found at i:10310899 original size:3 final size:3
Alignment explanation
Indices: 10310891--10311048 Score: 88
Period size: 3 Copynumber: 53.3 Consensus size: 3
10310881 GATGAAAACG
* * * * * * *
10310891 ATA ATA ATA ATA ATA ATG TTG ATA ATA ATA ATA GTA GTA GTA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
10310939 ATA ATA CTA ATG ATA ATA ATA A-A AGTA ATA ATA AGA ATA TTA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA
* * * * * * *
10310984 TTA GTA TTA ATA ATA ATG ATA ATA GTA ATA A-A AAA ATA A-A AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
10311030 AAA ATA GTA ATA GTA ATA A
1 ATA ATA ATA ATA ATA ATA A
10311049 AAGTGAAAAA
Statistics
Matches: 121, Mismatches: 30, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
2 6 0.05
3 113 0.93
4 2 0.02
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:10311174 original size:23 final size:23
Alignment explanation
Indices: 10311147--10311203 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
10311137 AAAAAGATAC
*
10311147 AAATAAAATAAATGATGAAATAT
1 AAATAAAATAAATAATGAAATAT
* * *
10311170 TAATAATAA-GAATAATGATATAT
1 AAATAA-AATAAATAATGAAATAT
10311193 AAATAAAATAA
1 AAATAAAATAA
10311204 GTGTGCTAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
22 2 0.08
23 22 0.85
24 2 0.08
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (23 bp):
AAATAAAATAAATAATGAAATAT
Found at i:10311283 original size:3 final size:3
Alignment explanation
Indices: 10311277--10311787 Score: 145
Period size: 3 Copynumber: 169.3 Consensus size: 3
10311267 AAAAGAAAAT
* * *
10311277 ATA ATA ATA ATA ATA AT- ACA ATA GTA ATA ATA ATA AAA AGGT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA
* * * * *
10311322 ATA AT- CTA TTA GATA GTA A-A ATA ATA ATA ATA ATAA ATG GTA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
* * * * *
10311367 GTG ATA TTA GTA GTA ATA ATA ATA ATA ATA ATA ATA GGA-A ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA
* * * * * * *
10311413 GTA CATTA ATA ATG ATA GTA TATG TTA ATA ACA ATA ATA ATA TATA AAA
1 ATA -A-TA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * * *
10311462 ATA GGA-A ATA ATA AT- ATG GTA AAA ATA ATA ATA ATA ATA ACA AAA
1 ATA --ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
10311507 ATA GTA ATA ATA GTA TGTG A-A ATA ATA ATT GTA A-A A-A ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
10311550 GTA ATA ATT ATA TTG ATA ATA CTA ATA ATA ATA GTA GTA A-A AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * *
10311597 AAA AAA ATA AAA AAA ATA ATA ATA GTA AAA ATG ACA ATA A-A ATA A-G
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * ** **
10311643 ATA ATA ATA ATG ATA A-A A-A ATA AAA AAA AGTA ATA ACG GCA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
* * * * *
10311687 ATA ATA ATA CCATA ATA AAA AAA AGAA ATA ATA ACA TGTAA ATA ATA
1 ATA ATA ATA --ATA ATA ATA ATA A-TA ATA ATA ATA -AT-A ATA ATA
* * * * * *
10311734 ATA ACA ATA ATA ACA ATA AT- ATA TTT ATA ATA ATA ATA ATA GTA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10311781 ATA ATA A
1 ATA ATA A
10311788 AATTAACTTT
Statistics
Matches: 366, Mismatches: 109, Indels: 66
0.68 0.20 0.12
Matches are distributed among these distances:
2 25 0.07
3 312 0.85
4 21 0.06
5 8 0.02
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:10311299 original size:17 final size:17
Alignment explanation
Indices: 10311274--10311311 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
10311264 AAAAAAAGAA
*
10311274 AATATAATAATAATAAT
1 AATACAATAATAATAAT
*
10311291 AATACAATAGTAATAAT
1 AATACAATAATAATAAT
10311308 AATA
1 AATA
10311312 AAAAGGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (17 bp):
AATACAATAATAATAAT
Found at i:10311475 original size:23 final size:22
Alignment explanation
Indices: 10311445--10311518 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 22
10311435 TGTTAATAAC
10311445 AATAATAATATATAAAAATAGGA
1 AATAATAATATATAAAAATA-GA
*
10311468 AATAATAATATGGTAAAAATA-A
1 AATAATAATAT-ATAAAAATAGA
* *
10311490 TAATAATAATA-ACAAAAATAGT
1 -AATAATAATATATAAAAATAGA
10311512 AATAATA
1 AATAATA
10311519 GTATGTGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
21 14 0.32
22 1 0.02
23 21 0.48
24 8 0.18
ACGTcount: A:0.65, C:0.01, G:0.07, T:0.27
Consensus pattern (22 bp):
AATAATAATATATAAAAATAGA
Found at i:10311500 original size:58 final size:58
Alignment explanation
Indices: 10311438--10311557 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 58
10311428 TAGTATATGT
*
10311438 TAATAACAATAATAATATATAAAAATA-G-GAAATAATAATATGGT-AAAAATAATAATAA
1 TAATAACAAAAATAATA-ATAAAAATATGTGAAATAATAAT-T-GTAAAAAATAATAATAA
* * * *
10311496 TAATAACAAAAATAGTAATAATAGTATGTGAAATAATAATTGTAAAAAATAATAGTAA
1 TAATAACAAAAATAATAATAAAAATATGTGAAATAATAATTGTAAAAAATAATAATAA
10311554 TAAT
1 TAAT
10311558 TATATTGATA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
57 9 0.17
58 34 0.63
59 11 0.20
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (58 bp):
TAATAACAAAAATAATAATAAAAATATGTGAAATAATAATTGTAAAAAATAATAATAA
Found at i:10311772 original size:41 final size:41
Alignment explanation
Indices: 10311727--10311812 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
10311717 ATAACATGTA
*
10311727 AATAATAATAACAATAATAACAA-TAA-TATATTTATAATAAT
1 AATAATAATAAAAATAATAA-AATTAACT-TATTTATAATAAT
* *
10311768 AATAATAGTAAAAATAATAAAATTAACTTTTTTATAATAAT
1 AATAATAATAAAAATAATAAAATTAACTTATTTATAATAAT
10311809 AATA
1 AATA
10311813 TATTTATAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
40 2 0.05
41 37 0.93
42 1 0.03
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (41 bp):
AATAATAATAAAAATAATAAAATTAACTTATTTATAATAAT
Found at i:10311840 original size:17 final size:16
Alignment explanation
Indices: 10311798--10311840 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 16
10311788 AATTAACTTT
10311798 TTTATAATAATAATATA
1 TTTATAA-AATAATATA
10311815 TTTAT--AATAATATA
1 TTTATAAAATAATATA
10311829 TTTATAAGAATA
1 TTTATAA-AATA
10311841 TTTAAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 14 0.61
17 9 0.39
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
TTTATAAAATAATATA
Found at i:10311844 original size:12 final size:14
Alignment explanation
Indices: 10311804--10311841 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
10311794 CTTTTTTATA
10311804 ATAATAATATATTT
1 ATAATAATATATTT
10311818 ATAATAATATATTT
1 ATAATAATATATTT
*
10311832 ATAAGAATAT
1 ATAATAATAT
10311842 TTAAAAAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATAATAATATATTT
Done.