Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 312 of 352
Found at i:101896203 original size:24 final size:24
Alignment explanation
Indices: 101896118--101896204 Score: 61
Period size: 24 Copynumber: 3.5 Consensus size: 24
101896108 CTTATCAAGA
* *
101896118 TAAATATTAGATTAAAT-TTAATAT
1 TAAATATTA-AATAAATATAAATAT
* *
101896142 TAAATTGATTAAATTAATA-GAATATT
1 TAAA-T-ATTAAATAAATATAAATA-T
** *
101896168 TATCTATCAAATAAATATAAATAT
1 TAAATATTAAATAAATATAAATAT
101896192 TAAATATTAAATA
1 TAAATATTAAATA
101896205 TTATTAAAAT
Statistics
Matches: 47, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
24 25 0.53
25 15 0.32
26 7 0.15
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.41
Consensus pattern (24 bp):
TAAATATTAAATAAATATAAATAT
Found at i:101899059 original size:41 final size:41
Alignment explanation
Indices: 101898997--101899106 Score: 140
Period size: 41 Copynumber: 2.8 Consensus size: 41
101898987 TACATTGAGA
*
101898997 CAAGTTGAGAGGATAGATATATTGTTACTGGTGTCAGGTGT
1 CAAGTTGAGAGGATAGATATATTGTTACAGGTGTCAGGTGT
* *
101899038 CAAGTTGAGGGGATAGGTATATTGTTACAGGTGTCAGGT-T
1 CAAGTTGAGAGGATAGATATATTGTTACAGGTGTCAGGTGT
* *
101899078 ----TTGAGAGGATAGATATATTATTATAGGTG
1 CAAGTTGAGAGGATAGATATATTGTTACAGGTG
101899107 AAGGCCTTTG
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
36 25 0.40
40 1 0.02
41 36 0.58
ACGTcount: A:0.28, C:0.05, G:0.32, T:0.35
Consensus pattern (41 bp):
CAAGTTGAGAGGATAGATATATTGTTACAGGTGTCAGGTGT
Found at i:101910242 original size:27 final size:26
Alignment explanation
Indices: 101910204--101910270 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 26
101910194 GTTTTATTAT
* * *
101910204 TTTTTAATTAATTTTAATATTTTTAG
1 TTTTTAAATAATTTTAAAATTTATAG
101910230 TTTGTTAAATAATTTTTAAAATTTATAG
1 TTT-TTAAATAA-TTTTAAAATTTATAG
*
101910258 TTTTTAAAAAATT
1 TTTTTAAATAATT
101910271 AATTAATTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
26 5 0.14
27 14 0.40
28 16 0.46
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.58
Consensus pattern (26 bp):
TTTTTAAATAATTTTAAAATTTATAG
Found at i:101910247 original size:28 final size:27
Alignment explanation
Indices: 101910204--101910270 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
101910194 GTTTTATTAT
* * *
101910204 TTTTTAATTAA-TTTTAATATTTTTAG
1 TTTTTAAATAATTTTTAAAATTTATAG
101910230 TTTGTTAAATAATTTTTAAAATTTATAG
1 TTT-TTAAATAATTTTTAAAATTTATAG
*
101910258 TTTTTAAAAAATT
1 TTTTTAAATAATT
101910271 AATTAATTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.09
27 16 0.46
28 16 0.46
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.58
Consensus pattern (27 bp):
TTTTTAAATAATTTTTAAAATTTATAG
Found at i:101919874 original size:18 final size:19
Alignment explanation
Indices: 101919837--101919877 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
101919827 TGGTTCATGT
101919837 TTTCAATCTCATATTTCAA
1 TTTCAATCTCATATTTCAA
101919856 TTTCAATTCTCA-A-TTCAA
1 TTTCAA-TCTCATATTTCAA
101919874 TTTC
1 TTTC
101919878 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
19 7 0.33
20 5 0.24
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTCAATCTCATATTTCAA
Found at i:101920541 original size:15 final size:16
Alignment explanation
Indices: 101920509--101920565 Score: 73
Period size: 15 Copynumber: 3.7 Consensus size: 16
101920499 TCATATATAT
*
101920509 AATATATATTTCAATC
1 AATATAAATTTCAATC
101920525 AATATAAATTT-AATC
1 AATATAAATTTCAATC
* *
101920540 AAAAT-GATTTCAATC
1 AATATAAATTTCAATC
101920555 AATATAAATTT
1 AATATAAATTT
101920566 GATAAATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.12
15 16 0.47
16 14 0.41
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (16 bp):
AATATAAATTTCAATC
Found at i:101921937 original size:22 final size:23
Alignment explanation
Indices: 101921890--101921938 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
101921880 CTATTATAAT
* *
101921890 ATTTATTATTTATACATGTGTAA
1 ATTTATTATATATACATGTATAA
*
101921913 ATTTATTA-ATATACATGTATTA
1 ATTTATTATATATACATGTATAA
101921935 ATTT
1 ATTT
101921939 TTCACCTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (23 bp):
ATTTATTATATATACATGTATAA
Found at i:101927457 original size:5 final size:5
Alignment explanation
Indices: 101927434--101927478 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
101927424 AATAGTTAAA
* * * *
101927434 TTTAC TTTAT TTTCC TTTAT TTTAC TTTAC TTTAC TTTCC TTTAC
1 TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC
101927479 AATTTTTAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAC
Found at i:101929541 original size:22 final size:22
Alignment explanation
Indices: 101929490--101929550 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
101929480 ATAAGTAAAT
* *
101929490 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
101929511 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
101929533 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
101929551 GATATTATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:101929650 original size:3 final size:3
Alignment explanation
Indices: 101929642--101929758 Score: 62
Period size: 3 Copynumber: 38.7 Consensus size: 3
101929632 AAAGTAGTGC
* * *
101929642 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-C TAT TAA GTTA TAA TGAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA T-AA
* * * * * *
101929688 -AA TAA TGA TAA TGA TGA T-A TAT TGGA TAA TAA TAG TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
* *
101929731 TAA GTAA CAA TAA TAAA TTA TAA TAA TA
1 TAA -TAA TAA TAA T-AA TAA TAA TAA TA
101929759 GTGATGAGAA
Statistics
Matches: 87, Mismatches: 18, Indels: 18
0.71 0.15 0.15
Matches are distributed among these distances:
2 7 0.08
3 69 0.79
4 11 0.13
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:101929777 original size:16 final size:16
Alignment explanation
Indices: 101929758--101929789 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
101929748 TTATAATAAT
101929758 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
101929774 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
101929790 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:101929921 original size:16 final size:15
Alignment explanation
Indices: 101929892--101929934 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
101929882 TATACGTATG
*
101929892 AAAAATAATGATAGT
1 AAAAATAATAATAGT
101929907 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
101929923 AATAATAATAAT
1 AAAAATAATAAT
101929935 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:101930037 original size:3 final size:3
Alignment explanation
Indices: 101930029--101930059 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
101930019 ACACTACCAT
101930029 ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
101930060 TAGAAATACA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:101931181 original size:44 final size:43
Alignment explanation
Indices: 101931117--101931202 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 43
101931107 TGAGTTCTTG
* *
101931117 ATCTGCTTCTTCGATCTGTTCCCCATAAACACAGGGATGCCAA
1 ATCTGCTTCTTCAATCTGTTCCCCATAAACACAGGCATGCCAA
**
101931160 ATCTGCTGTCTTCAA-CTTGTTCCTTATAAACACAGGCATGCCA
1 ATCTGCT-TCTTCAATC-TGTTCCCCATAAACACAGGCATGCCA
101931203 TGCTGAAATC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 8 0.22
44 29 0.78
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (43 bp):
ATCTGCTTCTTCAATCTGTTCCCCATAAACACAGGCATGCCAA
Found at i:101931632 original size:205 final size:204
Alignment explanation
Indices: 101931256--101932228 Score: 1390
Period size: 205 Copynumber: 4.9 Consensus size: 204
101931246 AGATCTATTT
* * * * *
101931256 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTT-TAACGTAAGCA
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCT--CGTAATCA
* * * * *
101931320 CGTGAAAGCCAAATCAACTATG-ATTCGATTTGCTCATTGTAAGCATAAGGATGCCAAACCATCT
64 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCT
* * * *
101931384 TGGATCCGCTTCAGCAT-AAA-CATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAG
129 TGGATCTGCTTCAG--TGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAAG
101931447 TGAAGATGCCAAA
192 TGAAGATGCCAAA
*
101931460 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGC-TTCTCGTAATCAC
* *
101931525 GTGAAAGCCAAATC-GACTATGTCTTCGATTTGTTCCTTGTAAACATAAGGATGCCAAACCATCT
65 GTGAAAGCCAAATCAG-CTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCT
101931589 TGGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAAGTG
129 TGGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAAGTG
101931654 AAGATGCCAAA
194 AAGATGCCAAA
*
101931665 CTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTT--A----------G--ATCACG
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCTCGTAATCACG
*
101931716 TGAAAGCCAAATCAGCTATGTCTCCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTG
66 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTG
* *
101931781 GATCTGCTTCAGTGAAATCGTTTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAAGTGAA
131 GATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAAGTGAA
101931846 GATGCCAAA
196 GATGCCAAA
* *
101931855 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTGAGATTTGCTTCATTGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTC-TCGTAATCAC
*
101931920 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
65 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
101931985 GGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
130 GGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAAGTGA
101932050 AGATGCCAAA
195 AGATGCCAAA
101932060 CTTCGATTCGTTCTCTGACAATACAGAGACGAC-AATCATC----ATTTGCTTCATCG--ATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTC-TCGTAATCAC
*
101932118 GTGAAAGCCAAATCAGCTATGTCTCCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
65 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
**
101932183 GGATCCACTTCAGCAT-AAA-CATCTGAAGGCGAGATCTGCTATGTGT
130 GGATCTGCTTCAG--TGAAATCATCTGAAGGCGAGATCTGCTATGTGT
101932229 GGCCTATTAC
Statistics
Matches: 709, Mismatches: 36, Indels: 54
0.89 0.05 0.07
Matches are distributed among these distances:
190 179 0.25
191 1 0.00
192 2 0.00
198 105 0.15
199 3 0.00
200 12 0.02
203 3 0.00
204 83 0.12
205 320 0.45
206 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (204 bp):
CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCTCGTAATCACG
TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTG
GATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAAGTGAA
GATGCCAAA
Found at i:101932075 original size:395 final size:399
Alignment explanation
Indices: 101931318--101932228 Score: 1491
Period size: 395 Copynumber: 2.3 Consensus size: 399
101931308 TTAACGTAAG
* * * *
101931318 CACGTGAAAGCCAAATCAACTATGAT-T-CGATTTGCTCATTGTAAGCATAAGGATGCCAAACCA
1 CACGTGAAAGCCAAATCAGCTATG-TCTCCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCA
* * *
101931381 TCTTGGATCCGCTTCAGCATAAACATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAA
65 TCTTGGATCCGCTTCAG-ATAAACATCTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAA
* *
101931446 GTGAAGATGCCAAACTTCGATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGC
129 GTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTGAGATTTGC
*
101931511 TTTCTCGTAATCACGTGAAAGCCAAATCGACTATGTCTTCGATTTGTTCCTTGTAAACATAAGGA
194 TTTCTCGTAATCACGTGAAAGCCAAATCGACTATGTCTTCGATTTGTTCCTTGTAAACACAAGGA
*
101931576 TGCCAAACCATCTTGGATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTACT
259 TGCCAAACCATCTTGGATCTGCTTCAGCGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTACT
*
101931641 CTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACGATACAGAGACGACAA-ATCA-
324 CTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAACATCAT
101931704 T-CTT-A-GAT
389 TGCTTCACGAT
101931712 CACGTGAAAGCCAAATCAGCTATGTCTCCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCAT
1 CACGTGAAAGCCAAATCAGCTATGTCTCCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCAT
* * *
101931777 CTTGGATCTGCTTCAG-TGAAATCGTTTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAA
66 CTTGGATCCGCTTCAGAT-AAA-CATCTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAA
101931841 GTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTGAGATTTGC
129 GTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTGAGATTTGC
*
101931906 -TTCATTGTAATCACGTGAAAGCCAAATC-AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAG
194 TTTC-TCGTAATCACGTGAAAGCCAAATCGA-CTATGTCTTCGATTTGTTCCTTGTAAACACAAG
* *
101931969 GATGCCAAACCATCTTGGATCTGCTTCAGCGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTG
257 GATGCCAAACCATCTTGGATCTGCTTCAGCGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTA
101932034 CTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAATCAT
322 CTCTCCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAA-CAT
101932099 CATTTGCTTCATCGAT
386 CA-TTGCTTCA-CGAT
101932115 CACGTGAAAGCCAAATCAGCTATGTCTCCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCAT
1 CACGTGAAAGCCAAATCAGCTATGTCTCCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCAT
*
101932180 CTTGGATCCACTTCAGCATAAACATCTGAAGGCGAGATCTGCTATGTGT
66 CTTGGATCCGCTTCAG-ATAAACATCTGAAGGCGAGATCTGCTATGTGT
101932229 GGCCTATTAC
Statistics
Matches: 479, Mismatches: 22, Indels: 23
0.91 0.04 0.04
Matches are distributed among these distances:
393 2 0.00
394 31 0.06
395 326 0.68
397 4 0.01
399 1 0.00
400 3 0.01
401 1 0.00
403 107 0.22
404 3 0.01
405 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (399 bp):
CACGTGAAAGCCAAATCAGCTATGTCTCCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCAT
CTTGGATCCGCTTCAGATAAACATCTGAAGGCGAGATCTGCTATGTGTCTACTCTCCATCAAAGT
GAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTGAGATTTGCTT
TCTCGTAATCACGTGAAAGCCAAATCGACTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATG
CCAAACCATCTTGGATCTGCTTCAGCGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTACTCT
CCATCAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAACATCATTG
CTTCACGAT
Found at i:101940267 original size:15 final size:14
Alignment explanation
Indices: 101940225--101940274 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
101940215 ATAACTTTGA
*
101940225 ATGCAAATGATGTG
1 ATGCAAATGATGAG
101940239 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
101940254 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
101940268 ATGCAAA
1 ATGCAAA
101940275 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:101944130 original size:22 final size:22
Alignment explanation
Indices: 101944079--101944139 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
101944069 ATAAGTAAAT
* *
101944079 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
101944100 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
101944122 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
101944140 GATATTATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:101944239 original size:3 final size:3
Alignment explanation
Indices: 101944231--101944341 Score: 59
Period size: 3 Copynumber: 36.7 Consensus size: 3
101944221 AAAGTAGTGC
* * *
101944231 TAA TAA TAA TAA TAA TAA TAA T-C TAT TAA GTTA TAA TGAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA T-AA TAA TAA
* * * * *
101944276 TGA TAA TGA TGA T-A TAT TAGA TAA TAA TAG TAA -AA TAA TAA GTAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA -TAA
* *
101944321 CAA TAA TAAA TTA TAA TAA TA
1 TAA TAA T-AA TAA TAA TAA TA
101944342 GTGATGAGAA
Statistics
Matches: 83, Mismatches: 16, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
2 7 0.08
3 64 0.77
4 12 0.14
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:101944360 original size:16 final size:16
Alignment explanation
Indices: 101944341--101944372 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
101944331 TTATAATAAT
101944341 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
101944357 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
101944373 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:101944505 original size:16 final size:15
Alignment explanation
Indices: 101944476--101944518 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
101944466 TATACGTATG
*
101944476 AAAAATAATGATAGT
1 AAAAATAATAATAGT
101944491 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
101944507 AATAATAATAAT
1 AAAAATAATAAT
101944519 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:101944633 original size:13 final size:13
Alignment explanation
Indices: 101944615--101944640 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
101944605 ACTACCATAT
101944615 AATAATAATAATA
1 AATAATAATAATA
101944628 AATAATAATAATA
1 AATAATAATAATA
101944641 TAGAAATACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:101944743 original size:28 final size:27
Alignment explanation
Indices: 101944690--101944742 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
101944680 AACAATACTA
101944690 TATATAAAAGTATATACATACATATATG
1 TATATAAAAG-ATATACATACATATATG
101944718 TATATAAAA-ATATACACTA-ATATAT
1 TATATAAAAGATATACA-TACATATAT
101944743 AATAATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 13 0.54
27 2 0.08
28 9 0.38
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.36
Consensus pattern (27 bp):
TATATAAAAGATATACATACATATATG
Found at i:101944749 original size:3 final size:3
Alignment explanation
Indices: 101944735--101944764 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
101944725 AAATATACAC
101944735 TAA TATA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TA
101944765 TTAAAATGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:101950604 original size:134 final size:134
Alignment explanation
Indices: 101950361--101950749 Score: 464
Period size: 134 Copynumber: 2.9 Consensus size: 134
101950351 AAACAGACCA
* *
101950361 AAAGAGAATTGTTTGATGCACTTAG-GCAGGAACTTGAGTGAGTCTTGTTGATCTTTCATTGTTC
1 AAAGAGAATTGTTTGATGCACTTAGAGCAGGAACTTGAGTGAGTGTTGTTGATCCTTCATTGTT-
* * * **
101950425 TTAACAGCTAACGCTCAATATTTCTTAGATCATTTCATGTACTTCTTTCATGTTTTTACCCTCTG
65 TTAACAGCTAAAGCTCAATAATGCTTAGATCATTTCATGTACTTCTTTCATGTTTTTACCCTCCC
101950490 AGCCT
130 AGCCT
* * **
101950495 GAGGAGAATTGTTTGATGCACTTAGAG-AGGTGCTTGAGTGAGTGTTGTTGATCCTTCATTGTTT
1 AAAGAGAATTGTTTGATGCACTTAGAGCAGGAACTTGAGTGAGTGTTGTTGATCCTTCATTGTTT
* ** * * * *
101950559 TCAACAGCTAAAGCTCAAAAATGCTTAGATGGTTTCGTGTCCTTCTTTCATGTTCTTACCTTCCC
66 T-AACAGCTAAAGCTCAATAATGCTTAGATCATTTCATGTACTTCTTTCATGTTTTTACCCTCCC
101950624 AGCCT
130 AGCCT
* * * ** *
101950629 AAAGAAAATTGTTTGATGCACTTA-AGCAGGAACTTGAGTGACTGTTGCTGAT-CTTTGTTATTT
1 AAAGAGAATTGTTTGATGCACTTAGAGCAGGAACTTGAGTGAGTGTTGTTGATCCTTCATT-GTT
* * *
101950692 TTAACAGTTAAAGTTCAATAATGCTTTAGA-CATTTCATGTGCTTCTTTCATGTTTTTA
65 TTAACAGCTAAAGCTCAATAATGC-TTAGATCATTTCATGTACTTCTTTCATGTTTTTA
101950750 TGTCCTGGCC
Statistics
Matches: 214, Mismatches: 36, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
133 51 0.24
134 162 0.76
135 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (134 bp):
AAAGAGAATTGTTTGATGCACTTAGAGCAGGAACTTGAGTGAGTGTTGTTGATCCTTCATTGTTT
TAACAGCTAAAGCTCAATAATGCTTAGATCATTTCATGTACTTCTTTCATGTTTTTACCCTCCCA
GCCT
Found at i:101955536 original size:3 final size:3
Alignment explanation
Indices: 101955528--101955602 Score: 78
Period size: 3 Copynumber: 25.0 Consensus size: 3
101955518 CATTGATGGT
* * * *
101955528 TGC TGC TGC TGC TGC TGC TGT TCC TGC TGC TCC TCC TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
* * * *
101955576 TGC TCC GGC TCC TGC TCC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC
101955603 ATAAAGGCAA
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.00, C:0.40, G:0.27, T:0.33
Consensus pattern (3 bp):
TGC
Found at i:101959539 original size:52 final size:53
Alignment explanation
Indices: 101959483--101959584 Score: 145
Period size: 53 Copynumber: 1.9 Consensus size: 53
101959473 AATATACATT
* *
101959483 TTAATTCTGACGTAATAAAATTT-TTTACTCCACCCTTA-TCTAGATGGTCTTA
1 TTAATTCTGACATAATAAAATTTGTTGACTCCACCCTTACT-TAGATGGTCTTA
* *
101959535 TTAATTCTGATATAATAAAATTTGTTGACTCCATCCTTACTTAGATGGTC
1 TTAATTCTGACATAATAAAATTTGTTGACTCCACCCTTACTTAGATGGTC
101959585 ATTTTATGAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
52 21 0.48
53 22 0.50
54 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (53 bp):
TTAATTCTGACATAATAAAATTTGTTGACTCCACCCTTACTTAGATGGTCTTA
Found at i:101984382 original size:20 final size:20
Alignment explanation
Indices: 101984359--101984408 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
101984349 AAATCCAAAT
*
101984359 TAAAATATTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
*
101984379 TAAAATCCTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
101984399 TAAGAATACT
1 TAA-AATACT
101984409 GACGTGGCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.28
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGGA
Found at i:101984623 original size:21 final size:20
Alignment explanation
Indices: 101984591--101984639 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
101984581 AATTGATTTA
101984591 TTTTTATA-ATATCATT-TGTT
1 TTTTTATATATAT-ATTATG-T
101984611 TTTTTATATATATATTATGT
1 TTTTTATATATATATTATGT
*
101984631 ATTTTATAT
1 TTTTTATAT
101984640 TACATAAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (20 bp):
TTTTTATATATATATTATGT
Found at i:101986689 original size:30 final size:30
Alignment explanation
Indices: 101986655--101986739 Score: 127
Period size: 30 Copynumber: 2.8 Consensus size: 30
101986645 AAAACCCTAG
*
101986655 CCACCTTGCTTCCTACTTGCACCTACTCCA
1 CCACCTTGCTTCCCACTTGCACCTACTCCA
*
101986685 CCACCTTGCCTCCCACTTGCACCTACTCCA
1 CCACCTTGCTTCCCACTTGCACCTACTCCA
*
101986715 CCACTTTG-TCTCCCACTTGCACCTA
1 CCACCTTGCT-TCCCACTTGCACCTA
101986740 GACCATCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.16, C:0.48, G:0.07, T:0.28
Consensus pattern (30 bp):
CCACCTTGCTTCCCACTTGCACCTACTCCA
Found at i:101987254 original size:3 final size:3
Alignment explanation
Indices: 101987243--101987312 Score: 71
Period size: 3 Copynumber: 24.3 Consensus size: 3
101987233 ATTTTTTTTT
101987243 TTA TT- TTA TTA -TA TTA -TA TTA TTTA TTA TTA TTA TT- TCTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA T-TA T-TA
101987287 TTA TTA TTA -TA TTA TTA TTA -TA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
101987313 ATATACCCTC
Statistics
Matches: 58, Mismatches: 1, Indels: 16
0.77 0.01 0.21
Matches are distributed among these distances:
2 11 0.19
3 40 0.69
4 7 0.12
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:101987254 original size:8 final size:8
Alignment explanation
Indices: 101987238--101987312 Score: 57
Period size: 8 Copynumber: 9.1 Consensus size: 8
101987228 GTTTTATTTT
*
101987238 TTTTTTTA
1 TTTTATTA
101987246 TTTTATTA
1 TTTTATTA
101987254 TATTATATTA
1 T-TT-TATTA
101987264 -TTTATTA
1 TTTTATTA
101987271 --TTATTA
1 TTTTATTA
101987277 TTTCTATATA
1 TTT-TAT-TA
101987287 TTATTATTA
1 TT-TTATTA
*
101987296 TATTATTA
1 TTTTATTA
*
101987304 TTATATTA
1 TTTTATTA
101987312 T
1 T
101987313 ATATACCCTC
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
6 6 0.11
7 5 0.09
8 24 0.43
9 8 0.14
10 12 0.21
11 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (8 bp):
TTTTATTA
Found at i:101987264 original size:13 final size:13
Alignment explanation
Indices: 101987243--101987314 Score: 69
Period size: 13 Copynumber: 5.5 Consensus size: 13
101987233 ATTTTTTTTT
*
101987243 TTATTTTATTATA
1 TTATATTATTATA
101987256 TTATATTATT-TA
1 TTATATTATTATA
*
101987268 TTATTATTATT-TC
1 TTA-TATTATTATA
101987281 TATATATTATTAT-
1 T-TATATTATTATA
101987294 TATATTATTATTATA
1 T-TA-TATTATTATA
101987309 TTATAT
1 TTATAT
101987315 ATACCCTCTC
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
12 5 0.10
13 32 0.62
14 14 0.27
15 1 0.02
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (13 bp):
TTATATTATTATA
Found at i:101987290 original size:19 final size:16
Alignment explanation
Indices: 101987244--101987314 Score: 81
Period size: 19 Copynumber: 4.2 Consensus size: 16
101987234 TTTTTTTTTT
101987244 TATT-TTATTATATTA
1 TATTATTATTATATTA
101987259 TATTATTTATTATTATTA
1 TATTA-TTATTA-TATTA
*
101987277 TTTCTATATATTATTATTA
1 TAT-TAT-TATTA-TATTA
101987296 TATTATTATTATATTA
1 TATTATTATTATATTA
101987312 TAT
1 TAT
101987315 ATACCCTCTC
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
15 4 0.08
16 8 0.16
17 11 0.22
18 11 0.22
19 15 0.31
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTATTATTATATTA
Found at i:101987290 original size:22 final size:21
Alignment explanation
Indices: 101987243--101987312 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 21
101987233 ATTTTTTTTT
*
101987243 TTATT-TTATTATATTATATTA
1 TTATTATTATTATTTTATA-TA
101987264 TTTATTATTATTATTTCTATATA
1 -TTATTATTATTATTT-TATATA
101987287 TTATTATTA-TATTATTATTATA
1 TTATTATTATTATT-TTA-TATA
101987309 TTAT
1 TTAT
101987313 ATATACCCTC
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
21 6 0.14
22 23 0.53
23 10 0.23
24 4 0.09
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (21 bp):
TTATTATTATTATTTTATATA
Found at i:101987313 original size:5 final size:5
Alignment explanation
Indices: 101987244--101987314 Score: 65
Period size: 5 Copynumber: 13.6 Consensus size: 5
101987234 TTTTTTTTTT
* *
101987244 TATTT TATTA TATTA TATTA T-TTA TTATTA TTATT- TCTATA TATTA
1 TATTA TATTA TATTA TATTA TATTA -TATTA -TATTA TAT-TA TATTA
101987290 TTATTA TATTA TTATTA TATTA TAT
1 -TATTA TATTA -TATTA TATTA TAT
101987315 ATACCCTCTC
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
4 5 0.09
5 32 0.56
6 20 0.35
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (5 bp):
TATTA
Found at i:101997607 original size:86 final size:86
Alignment explanation
Indices: 101997457--101998225 Score: 762
Period size: 86 Copynumber: 8.9 Consensus size: 86
101997447 ATCAGTGAAT
* * * ** * * *
101997457 TTGCAGATCTTATCTCCCTAAGCAGTAG-GGAAACAAATCGAGGTTGATGGGCCTTAAACTCCTA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGGGTCTTAAACCCCTA
* *
101997521 AGCAGTAGGGTAACTGACCGAA
65 AGCAGTAGGGTAACAGACCAAA
*
101997543 TTGCAGATCTTATTTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAA
101997608 GCAGTAGGGTAACAGACCAAA
66 GCAGTAGGGTAACAGACCAAA
* *
101997629 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGAAGGGTCTTAAACCACTAA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAA
*
101997694 GCAATAGGGTAACAGACCAAA
66 GCAGTAGGGTAACAGACCAAA
* *
101997715 TTGCAGGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAGTCTTAAACCCCTAA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAA
101997780 GCAGTAGGGTAACAGACCAAA
66 GCAGTAGGGTAACAGACCAAA
*
101997801 TTGCAGATCTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAA
* * *
101997866 GCAGTAGGGTAACAGGCTGAAT
66 GCAGTAGGGTAACAGAC-CAAA
* * * * * ** *
101997888 TTACAGATCTTATCCCCCTAAGAAGTAGTGGAGCAGATCGAAGGCG-ATGACCTTAACCCCCTAA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAA
** * *
101997952 GCAGTAGGGTAGTAGGCTAAA
66 GCAGTAGGGTAACAGACCAAA
** * * * ** * *
101997973 TTTATAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGGTGACA-AGCCTTAAACCCC
1 -TTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGA-AGGGTCTTAAACCCC
*
101998036 TAAGCAGTAGGGTAACA-AGCTGAAAA
63 TAAGCAGTAGGGTAACAGA-C--CAAA
* * * * * ** ** *
101998062 TTTACAGATCTTAAACCCCCTAAGCAGTAG-GGAAACAGATTGAAGGTGAAAAGCCTT-AACCCC
1 -TTGCAGATCTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGGGTCTTAAACCCC
* * * *
101998125 TAAACAGTAGGGTGACAGGCTAAA
63 TAAGCAGTAGGGTAACAGACCAAA
** * * * * * * * *
101998149 TTTATATATCGTAACACCCTAAGCAGTAG-GGAAACAGATCGAAGACGATGGGCCTTAAACCCTT
1 -TTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGGGTCTTAAACCCCT
*
101998213 AAGCAGTAAGGTA
64 AAGCAGTAGGGTA
101998226 CCAAGCTGAA
Statistics
Matches: 599, Mismatches: 71, Indels: 25
0.86 0.10 0.04
Matches are distributed among these distances:
85 4 0.01
86 417 0.70
87 99 0.17
88 1 0.00
89 37 0.06
90 41 0.07
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (86 bp):
TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAA
GCAGTAGGGTAACAGACCAAA
Found at i:101997608 original size:44 final size:44
Alignment explanation
Indices: 101997558--101997872 Score: 246
Period size: 44 Copynumber: 7.3 Consensus size: 44
101997548 GATCTTATTT
*
101997558 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAAC
1 CCCTAAGCAGTAGTGGAGCAGATCCAAGACGAAGGGTCTTAAAC
* * * * *
101997602 CCCTAAGCAGTAG-GGTAACAGA-CCAA-ATTGCA-GATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCCAAGA-CGAAGGGTCTTAAAC
*
101997643 TCCCTAAGCAGTAGTGGAGCAGATCAAAGACGAAGGGTCTTAAAC
1 -CCCTAAGCAGTAGTGGAGCAGATCCAAGACGAAGGGTCTTAAAC
* * * * * *
101997688 CACTAAGCAATAG-GGTAACAGA-CCAA-ATTGCA-GGTCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCCAAGA-CGAAGGGTCTTAAAC
* *
101997729 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAGTCTTAAAC
1 -CCCTAAGCAGTAGTGGAGCAGATCCAAGACGAAGGGTCTTAAAC
* * * * *
101997774 CCCTAAGCAGTAG-GGTAACAGA-CCAA-ATTGCA-GATCTT-ATC
1 CCCTAAGCAGTAGTGG-AGCAGATCCAAGA-CGAAGGGTCTTAAAC
* *
101997815 TCTCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAAC
1 -CCCTAAGCAGTAGTGGAGCAGATCCAAGACGAAGGGTCTTAAAC
101997860 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
101997873 GGTAACAGGC
Statistics
Matches: 205, Mismatches: 42, Indels: 48
0.69 0.14 0.16
Matches are distributed among these distances:
41 6 0.03
42 69 0.34
43 42 0.20
44 82 0.40
45 6 0.03
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (44 bp):
CCCTAAGCAGTAGTGGAGCAGATCCAAGACGAAGGGTCTTAAAC
Found at i:101997651 original size:42 final size:42
Alignment explanation
Indices: 101997517--101997828 Score: 217
Period size: 42 Copynumber: 7.3 Consensus size: 42
101997507 GCCTTAAACT
* * *
101997517 CCTAAGCAGTAGGGTAACTGACCGAATTGCAGATCTTATTTC
1 CCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
* * * * * *
101997559 CCTAAGCAGTAGTGG-AGCAGATCGAAGA-CGAAGGGTCTTAAAC-C
1 CCTAAGCAGTAG-GGTAACAGA-CCAA-ATTGCA-GATCTT-ATCTC
101997603 CCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
1 CCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
* * ** * * *
101997645 CCTAAGCAGTAGTGG-AGCAGATCAAAGACGAAGGGTCTTAAAC-C
1 CCTAAGCAGTAG-GGTAACAGACCAAA-TTGCA-GATCTT-ATCTC
* * *
101997689 ACTAAGCAATAGGGTAACAGACCAAATTGCAGGTCTTATCTC
1 CCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
* * * * *
101997731 CCTAAGCAGTAGTGG-AGCAGATCGAAGA-CGAAGAGTCTTAAAC-C
1 CCTAAGCAGTAG-GGTAACAGA-CCAA-ATTGCAGA-TCTT-ATCTC
101997775 CCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
1 CCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
*
101997817 TCTAAGCAGTAG
1 CCTAAGCAGTAG
101997829 TGGAGCAGAT
Statistics
Matches: 204, Mismatches: 44, Indels: 44
0.70 0.15 0.15
Matches are distributed among these distances:
41 6 0.03
42 83 0.41
43 38 0.19
44 72 0.35
45 5 0.02
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.21
Consensus pattern (42 bp):
CCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTC
Found at i:101997907 original size:43 final size:43
Alignment explanation
Indices: 101997852--101998185 Score: 198
Period size: 43 Copynumber: 7.7 Consensus size: 43
101997842 AGACGAAGGG
*
101997852 TCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA
1 TCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA
* * * * **
101997895 TCTTATCCCCCTAAGAAGTAGTGG-AGCA-GATCGAA--GGCGATGA
1 TCTTAACCCCCTAAGCAGTAG-GGTAACAGGCT-GAATTTAC-A-GA
* ** * *
101997938 CCTTAACCCCCTAAGCAGTAGGGTAGTAGGCTAAATTTATAGA
1 TCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA
* * * *
101997981 TCTTAACCCCCTAAGCAGTAGGGAAACA-GATCGAAGGTGACA-A
1 TCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-GAA-TTTACAGA
* * *
101998024 GCCTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAAAATTTACAGA
1 -TCTTAACCCCCTAAGCAGTAGGGTAACAGGCTG--AATTTACAGA
* ** * * *
101998070 TCTTAAACCCCCTAAGCAGTAGGGAAACAGATTGAAGGTGA-AAA
1 TCTT-AACCCCCTAAGCAGTAGGGTAACAGGCTGAA-TTTACAGA
* * * * * *
101998114 GCCTTAA-CCCCTAAACAGTAGGGTGACAGGCTAAATTTATATA
1 -TCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA
* * *
101998157 TCGTAACACCCTAAGCAGTAGGGAAACAG
1 TCTTAACCCCCTAAGCAGTAGGGTAACAG
101998186 ATCGAAGACG
Statistics
Matches: 215, Mismatches: 56, Indels: 40
0.69 0.18 0.13
Matches are distributed among these distances:
41 1 0.00
42 13 0.06
43 120 0.56
44 40 0.19
45 14 0.07
46 27 0.13
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (43 bp):
TCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA
Found at i:101998045 original size:44 final size:44
Alignment explanation
Indices: 101997982--101998136 Score: 163
Period size: 44 Copynumber: 3.5 Consensus size: 44
101997972 ATTTATAGAT
*
101997982 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGC
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGC
* * ** * *
101998026 CTTAAACCCCTAAGCAGTAGGGTAACA-AGCTGAAAATTTAC-AGAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATC-G-AAGGTGACAAG-C
* *
101998071 CTTAAACCCCCTAAGCAGTAGGGAAACAGATTGAAGGTGAAAAGC
1 CTTAAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGC
*
101998116 CTT-AACCCCTAAACAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGG
101998137 TGACAGGCTA
Statistics
Matches: 89, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
43 17 0.19
44 30 0.34
45 18 0.20
46 23 0.26
47 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (44 bp):
CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGC
Found at i:101998769 original size:30 final size:30
Alignment explanation
Indices: 101998735--101998820 Score: 138
Period size: 30 Copynumber: 2.9 Consensus size: 30
101998725 AAAACCCTAG
101998735 CCACCTTGCTTCCCACTTGCACCTACTCCA
1 CCACCTTGCTTCCCACTTGCACCTACTCCA
*
101998765 CCACCTTGCCTCCCACTTGCACCTACTCCA
1 CCACCTTGCTTCCCACTTGCACCTACTCCA
*
101998795 CCACATTG-TCTCCCACTTGCACCTAC
1 CCACCTTGCT-TCCCACTTGCACCTAC
101998821 ACCATCAAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.17, C:0.50, G:0.07, T:0.26
Consensus pattern (30 bp):
CCACCTTGCTTCCCACTTGCACCTACTCCA
Found at i:101998981 original size:49 final size:48
Alignment explanation
Indices: 101998912--101999060 Score: 244
Period size: 49 Copynumber: 3.0 Consensus size: 48
101998902 AAGAAAGAAG
101998912 GAGGAGGAAAGAATTGTATTTTTGAAAGATTTTTTTTATACAAAAAAAA
1 GAGGAGGAAAGAATTGTATTTTTGAAAG-TTTTTTTTATACAAAAAAAA
*
101998961 GAGGAGGAAAGAATTGTATTTTTGAAAGGTTTTTTTATACAAAAAAAAAA
1 GAGGAGGAAAGAATTGTATTTTTGAAAGTTTTTTTTATAC--AAAAAAAA
*
101999011 GAGGAGGAAAGAATTGTATTTTTGAAAGGTTTTTTTGATACAAAAAAAA
1 GAGGAGGAAAGAATTGTATTTTTGAAA-GTTTTTTTTATACAAAAAAAA
101999060 G
1 G
101999061 GAGAAGAATG
Statistics
Matches: 94, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
48 11 0.12
49 37 0.39
50 35 0.37
51 11 0.12
ACGTcount: A:0.44, C:0.02, G:0.21, T:0.33
Consensus pattern (48 bp):
GAGGAGGAAAGAATTGTATTTTTGAAAGTTTTTTTTATACAAAAAAAA
Found at i:101999016 original size:50 final size:50
Alignment explanation
Indices: 101998912--101999059 Score: 255
Period size: 50 Copynumber: 3.0 Consensus size: 50
101998902 AAGAAAGAAG
*
101998912 GAGGAGGAAAGAATTGTATTTTTGAAAGATTTTTTTTATAC--AAAAAAAA
1 GAGGAGGAAAGAATTGTATTTTTGAAAG-GTTTTTTTATACAAAAAAAAAA
101998961 GAGGAGGAAAGAATTGTATTTTTGAAAGGTTTTTTTATACAAAAAAAAAA
1 GAGGAGGAAAGAATTGTATTTTTGAAAGGTTTTTTTATACAAAAAAAAAA
101999011 GAGGAGGAAAGAATTGTATTTTTGAAAGGTTTTTTTGATACAAAAAAAA
1 GAGGAGGAAAGAATTGTATTTTTGAAAGGTTTTTTT-ATACAAAAAAAA
101999060 GGAGAAGAAT
Statistics
Matches: 95, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
48 11 0.12
49 28 0.29
50 44 0.46
51 12 0.13
ACGTcount: A:0.45, C:0.02, G:0.20, T:0.33
Consensus pattern (50 bp):
GAGGAGGAAAGAATTGTATTTTTGAAAGGTTTTTTTATACAAAAAAAAAA
Found at i:101999455 original size:24 final size:24
Alignment explanation
Indices: 101999423--101999468 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
101999413 AGCTTTGTTT
* *
101999423 TATTTTTTATTTTATTATTATTAC
1 TATTATTTATATTATTATTATTAC
101999447 TATTATTTATATTATTATTATT
1 TATTATTTATATTATTATTATT
101999469 TCTCATGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (24 bp):
TATTATTTATATTATTATTATTAC
Found at i:101999726 original size:20 final size:20
Alignment explanation
Indices: 101999698--101999751 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
101999688 TTGCTATTAC
* *
101999698 TATTATTATATAT-TAGTGTA
1 TATTTTTATATATATA-TATA
* *
101999718 TATTTTTATGTGTATATATA
1 TATTTTTATATATATATATA
101999738 TATTTTTATATATA
1 TATTTTTATATATA
101999752 GTATTGTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.59
Consensus pattern (20 bp):
TATTTTTATATATATATATA
Found at i:102000662 original size:7 final size:8
Alignment explanation
Indices: 102000650--102000683 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
102000640 ATAATAAAAT
102000650 ATAT-AAA
1 ATATCAAA
102000657 ATAT-AAA
1 ATATCAAA
102000664 ATATCAAA
1 ATATCAAA
102000672 ATATCAAA
1 ATATCAAA
102000680 ATAT
1 ATAT
102000684 TAGAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (8 bp):
ATATCAAA
Found at i:102000690 original size:16 final size:15
Alignment explanation
Indices: 102000643--102000690 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
102000633 GATGGGAATA
102000643 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
*
102000659 ATAAAATATCAAAAT
1 ATAAAATATTAAAAT
*
102000674 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
102000690 A
1 A
102000691 ATAATAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 7 0.25
16 21 0.75
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:102000856 original size:23 final size:22
Alignment explanation
Indices: 102000805--102000858 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
102000795 ATACTACATC
102000805 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
102000824 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
102000847 AATATGTACATA
1 AATATGTACATA
102000859 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:102000905 original size:22 final size:24
Alignment explanation
Indices: 102000821--102000906 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
102000811 TACATATATA
* *
102000821 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
102000844 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
102000869 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
102000892 -AAGATATATACATAA
1 AAAAATATATACATAA
102000907 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:102000957 original size:25 final size:25
Alignment explanation
Indices: 102000929--102001062 Score: 93
Period size: 25 Copynumber: 5.6 Consensus size: 25
102000919 AAAAAAATAT
102000929 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
102000954 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
* * *
102000979 ATATATATACGTAATATAAAATTTAA-
1 ATATATA-A-ATAATATAATATTAAAG
** *
102001005 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
102001027 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
102001050 AAATAT-AATAATA
1 ATATATAAATAATA
102001063 ACAAAAAAAA
Statistics
Matches: 84, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
21 3 0.04
22 13 0.15
23 18 0.21
24 5 0.06
25 33 0.39
26 2 0.02
27 10 0.12
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:102001060 original size:23 final size:25
Alignment explanation
Indices: 102000931--102001062 Score: 77
Period size: 22 Copynumber: 5.5 Consensus size: 25
102000921 AAAAATATAT
*
102000931 ATATAAATAATATAATATT-AAAG-
1 ATATATATAATATAATATTAAAAGA
* *
102000954 ATATATA-AATAAAATAGTATAAAATA
1 ATATATATAATATAATA-T-TAAAAGA
* *
102000980 TATATATACGTAATATAAAATT-TAA-A
1 -ATATATA--TAATATAATATTAAAAGA
**
102001006 ATATACCT-A-AT-ATATTAAAAGA
1 ATATATATAATATAATATTAAAAGA
*
102001028 ATATATATAATATAATATTAAGA-A
1 ATATATATAATATAATATTAAAAGA
102001052 ATATA-ATAATA
1 ATATATATAATA
102001063 ACAAAAAAAA
Statistics
Matches: 83, Mismatches: 13, Indels: 26
0.68 0.11 0.21
Matches are distributed among these distances:
20 4 0.05
21 4 0.05
22 16 0.19
23 15 0.18
24 9 0.11
25 16 0.19
26 1 0.01
27 9 0.11
28 1 0.01
29 1 0.01
30 7 0.08
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATATAATATAATATTAAAAGA
Found at i:102001695 original size:30 final size:30
Alignment explanation
Indices: 102001545--102001719 Score: 237
Period size: 30 Copynumber: 5.8 Consensus size: 30
102001535 TAGGTACAAG
* *
102001545 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
102001575 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
102001605 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
102001635 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
102001665 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
102001695 TGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
102001720 TGAGAAAAGT
Statistics
Matches: 131, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
29 2 0.02
30 129 0.98
ACGTcount: A:0.21, C:0.04, G:0.49, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:102002592 original size:77 final size:77
Alignment explanation
Indices: 102002432--102002683 Score: 357
Period size: 77 Copynumber: 3.3 Consensus size: 77
102002422 ATGTAAACCC
* * *
102002432 AAGGCTCAACTCACATCTCGCAATATGAATTGA--TTTTTGAAAAGCAGAAATTGAAAA-CGCCT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAG-CT
** * *
102002494 CAGCGTGTGACCC
65 CAGCACGTGAGCA
* * *
102002507 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAACTGAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
102002572 AGCACGTGAGCA
66 AGCACGTGAGCA
* *
102002584 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
102002649 AGCACGTGAGCA
66 AGCACGTGAGCA
*
102002661 AAGGCTCAACTCACTTCTCGCAA
1 AAGGCTCAACTCACCTCTCGCAA
102002684 AACTAGATTT
Statistics
Matches: 157, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
75 30 0.19
77 126 0.80
78 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.25
Consensus pattern (77 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
AGCACGTGAGCA
Found at i:102002779 original size:16 final size:16
Alignment explanation
Indices: 102002758--102002791 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
102002748 TTGATTTTTG
*
102002758 AAAAATATAAATTGAA
1 AAAAATAGAAATTGAA
102002774 AAAAATAGAAATTGAA
1 AAAAATAGAAATTGAA
102002790 AA
1 AA
102002792 GCGGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (16 bp):
AAAAATAGAAATTGAA
Found at i:102002920 original size:73 final size:73
Alignment explanation
Indices: 102002828--102003026 Score: 265
Period size: 76 Copynumber: 2.7 Consensus size: 73
102002818 TGAGCCGAGA
* * *
102002828 CTCAACTCACCTCTT-GCAATATGAGTTAATTTTAGACAAACAGAAATTGAAATTACCTCAGCGT
1 CTCAACTCACCT-TTCGCAATATGAGTTAATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGT
102002892 GTCCCAAGG
65 GTCCCAAGG
* *
102002901 CTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGC
1 CTCAACTCACCTTTCGCAATATGAGTT-A-ATTTTTGAAAAACAGAAA-TTGAAAATACCTCAGC
**
102002966 GTGTCCTGAGG
63 GTGTCCCAAGG
* * *
102002977 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGA
1 CTCAACTCACCTTTCGCAATATGAGTTAATTTTTGAAAAACAGAAATTGA
102003027 GCAGAAATTG
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
72 2 0.02
73 27 0.25
74 17 0.15
75 15 0.14
76 49 0.45
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (73 bp):
CTCAACTCACCTTTCGCAATATGAGTTAATTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTG
TCCCAAGG
Found at i:102002985 original size:76 final size:74
Alignment explanation
Indices: 102002785--102003190 Score: 329
Period size: 71 Copynumber: 5.3 Consensus size: 74
102002775 AAAATAGAAA
* * * * * *
102002785 TTGAAAAGCGGAAATTAAAAAGACCTCAGCATGTGAGCC-GAGACTCAACTCACCTCTTGCAATA
1 TTGAAAAACAGAAATTAAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
*
102002849 TGAGTT-AATTT
63 TGAGTTGATTTT
* * * * ** *
102002860 TAGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
102002925 GTTGATTTTT
66 GTTGA-TTTT
102002935 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
102003000 AGTTGA-TTT
65 AGTTGATTTT
* * * * *
102003009 TTGAAAAACATAAATTGAGCAGAAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTC
1 TTG------A-AAA---A-CAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
102003074 TCGCAATATGAGTTGATTTT
55 TCGCAATATGAGTTGATTTT
** * * ** * * * *
102003094 TTG---ATGATAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
102003156 GTTGATTTT
66 GTTGATTTT
*
102003165 TTGAATTAAAACAGAAATTGAAAATA
1 TTG-A--AAAACAGAAATTAAAAATA
102003191 GAAATGGAAA
Statistics
Matches: 274, Mismatches: 35, Indels: 42
0.78 0.10 0.12
Matches are distributed among these distances:
71 63 0.23
72 2 0.01
73 30 0.11
74 7 0.03
75 39 0.14
76 51 0.19
77 14 0.05
80 1 0.00
81 3 0.01
84 52 0.19
85 12 0.04
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (74 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:102003068 original size:160 final size:164
Alignment explanation
Indices: 102002865--102003275 Score: 484
Period size: 160 Copynumber: 2.6 Consensus size: 164
102002855 AATTTTAGAC
* * * *** * *
102002865 AAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAACTCACCTTTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
102002930 TTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
66 TTTTTTTGAAAAACATAAATTTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCACA
*
102002995 ATATGAGTTGA-TTTTTG-A-AAAACATAAATTG
131 ATATGAGTTGATTTTTTGAATAAAACAGAAATTG
* *
102003026 -AGCAGAAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
** * * * *
102003090 -TTTTTTG---ATGATAAA-TTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCACA
66 TTTTTTTGAAAAACATAAATTTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCACA
102003150 ATATGAGTTGATTTTTTGAATTAAAACAGAAATTG
131 ATATGAGTTGATTTTTTGAA-TAAAACAGAAATTG
* * * *
102003185 AAAATAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTG
1 -AAACAGAAATTGAAAATACCTCAACGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTG
* *
102003248 ATTTTTTTGAAACACATAAATTAAAAAA
65 ATTTTTTTGAAAAACATAAATTTAAAAA
102003276 AAAATTAAAA
Statistics
Matches: 208, Mismatches: 31, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
155 49 0.24
156 11 0.05
157 1 0.00
159 57 0.27
160 63 0.30
161 17 0.08
163 5 0.02
164 5 0.02
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (164 bp):
AAACAGAAATTGAAAATACCTCAACGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTGAAAAACATAAATTTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCACA
ATATGAGTTGATTTTTTGAATAAAACAGAAATTG
Found at i:102003237 original size:159 final size:157
Alignment explanation
Indices: 102002902--102003261 Score: 440
Period size: 159 Copynumber: 2.3 Consensus size: 157
102002892 GTCCCAAGGC
* *
102002902 TCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG--AAACAGAAATTTAAAAATACCTCAACG
* * * *
102002967 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAGCAGA
63 TGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAACAGA
* * *
102003032 AATTGAAAATACCTCAACGGGTCTTGAGGT
128 AATGGAAAACACCTCAACGCGTCTTGAGGT
** * * *
102003062 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-ATGATAAA-TTGAAAATACCTCAATGTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAGAAATTTAAAAATACCTCAACGTGA
* * *
102003125 CTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAAT
66 CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTG-A--AAAACAGAAATTG--AAC
102003190 AGAAATGGAAAACACCTC-A-GCGTCTTGAGGT
125 AGAAATGGAAAACACCTCAACGCGTCTTGAGGT
*
102003221 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAACA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAACA
102003262 CATAAATTAA
Statistics
Matches: 172, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
155 49 0.28
156 11 0.06
157 1 0.01
159 57 0.33
160 35 0.20
161 19 0.11
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (157 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAGAAATTTAAAAATACCTCAACGTGA
CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAACAGAAAT
GGAAAACACCTCAACGCGTCTTGAGGT
Found at i:102003404 original size:75 final size:74
Alignment explanation
Indices: 102003280--102003596 Score: 324
Period size: 77 Copynumber: 4.3 Consensus size: 74
102003270 AAAAAAAAAA
* * ** *
102003280 TTAAAAACAGAATTTGAAAGGACCTC-GACGTGTGGCCCGAGACTCAACTCACCTCTCGCAATAT
1 TTAAAAACAAAAATTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATAT
*
102003344 GAGTTGATTCTT
63 GAGTTGATTTTT
** *
102003356 TTAAAAAGCAAAAATTGAAAATACCTTTGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGA
1 TTAAAAA-CAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
102003421 GTTGATTTTT
65 GTTGATTTTT
* * *
102003431 TTGATAAAA-ATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 TT-A-AAAACA-A-AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
102003495 TGAGTTGA-TTTT
62 TGAGTTGATTTTT
* * * ** *
102003507 TGACAAAC-AAAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACTTCTCGCAATATGAG
1 TTAAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
102003569 TTGATTTTT
66 TTGATTTTT
* * *
102003578 TT-GAAACATAAATTAAAAA
1 TTAAAAACAAAAATTGAAAA
102003597 AACGAAAATT
Statistics
Matches: 206, Mismatches: 26, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
70 40 0.19
71 13 0.06
72 16 0.08
73 1 0.00
74 3 0.01
75 42 0.20
76 14 0.07
77 76 0.37
78 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
TTAAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:102003482 original size:77 final size:76
Alignment explanation
Indices: 102003322--102003736 Score: 411
Period size: 72 Copynumber: 5.4 Consensus size: 76
102003312 TGGCCCGAGA
* * **
102003322 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTT-AAAAAGCAAAAATTGAAAATACCTTTGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
*
102003386 GTGTCCCGAGG
66 GTGTCCTGAGG
* * * * *
102003397 CTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATATCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAAAACAAAAATTGAAAATACCTCAG
102003462 CGTGTCCTGAGG
65 CGTGTCCTGAGG
* *
102003474 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-ACAAAC-AAAATTGAAATTACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
*
102003535 --GTCTTGAGG
66 GTGTCCTGAGG
* * **
102003544 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAAAACGAAAATTGA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AA-A-AAA--CAAAAATTG--AA----
102003609 AAATACCTCAGCGTGTCCTGAGG
55 -AATACCTCAGCGTGTCCTGAGG
** *
102003632 CTCAACTCACCTCTCGCAATATGAGTTGA---AATT-AAAACACAAAAATTGAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
* *
102003693 GTGCCCCGAGG
66 GTGTCCTGAGG
* * *
102003704 CTCAACTCACCTCTTGTAATATGAGCTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
102003737 GAAAAAGTAG
Statistics
Matches: 279, Mismatches: 38, Indels: 46
0.77 0.10 0.13
Matches are distributed among these distances:
70 36 0.13
72 68 0.24
73 4 0.01
74 1 0.00
75 40 0.14
76 4 0.01
77 60 0.22
79 11 0.04
81 4 0.01
82 1 0.00
83 2 0.01
85 2 0.01
86 10 0.04
88 36 0.13
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (76 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
GTGTCCTGAGG
Found at i:102003631 original size:158 final size:159
Alignment explanation
Indices: 102003447--102003736 Score: 433
Period size: 158 Copynumber: 1.8 Consensus size: 159
102003437 AAAATAGAAT
* ** *
102003447 TTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATT-AAA
* ** * *
102003512 A-AC-AAAATTGAAATTACCTCAGCGT-CTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
64 ACACAAAAATTGAAAATACCTCAGCGTCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
102003574 TTTTTTGAAACATAAATTAAAAAAACGAAAA
129 TTTTTTGAAACATAAATTAAAAAAACGAAAA
102003605 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
1 TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
* *
102003670 ACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGTAATATGAGCTGATT
66 ACAAAAATTGAAAATACCTCAGCGT-CCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
102003735 TT
130 TT
102003737 GAAAAAGTAG
Statistics
Matches: 117, Mismatches: 11, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
156 3 0.03
157 4 0.03
158 76 0.65
160 34 0.29
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (159 bp):
TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
ACAAAAATTGAAAATACCTCAGCGTCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTTGAAACATAAATTAAAAAAACGAAAA
Found at i:102003970 original size:78 final size:75
Alignment explanation
Indices: 102003882--102004372 Score: 620
Period size: 72 Copynumber: 6.5 Consensus size: 75
102003872 AGTGTGTAAT
* ** * *
102003882 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTTTTT-GAAAACAGAAATTGAAAATAC
*
102003947 CTCAGCATGTGAAC
65 CTCAGC--GTG-TC
**
102003961 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA--TTTTTTTTGAAAACAGAAATTGAAAATA
*
102004025 CCTCAACGTGTC
64 CCTCAGCGTGTC
* *
102004037 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTTTTTTTGAAAATAGAAATTGAAAAT
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTG-A--TTTTTTTTGAAAACAGAAATTGAAAAT
*
102004102 ACCTCAACGTGTC
63 ACCTCAGCGTGTC
* * * *
102004115 TTGAGGCTCAACTCATTTCTAGCAATATAAGTTGA---ATTTTGAAAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
102004177 TCAGCGTGTC
66 TCAGCGTGTC
* *
102004187 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---ATTTTGAAAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
102004249 TCAGCGTGTC
66 TCAGCGTGTC
* *
102004259 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTT-AACAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTTTTTGAA-AACAGAAATTGAAAATAC
102004323 CTCAGCGTGTC
65 CTCAGCGTGTC
** * *
102004334 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTT
102004373 GAAAAACAAA
Statistics
Matches: 383, Mismatches: 21, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
72 137 0.36
74 2 0.01
75 69 0.18
76 1 0.00
77 34 0.09
78 106 0.28
79 26 0.07
80 8 0.02
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (75 bp):
CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
TCAGCGTGTC
Found at i:102004206 original size:150 final size:148
Alignment explanation
Indices: 102003882--102004372 Score: 596
Period size: 150 Copynumber: 3.3 Consensus size: 148
102003872 AGTGTGTAAT
* * **
102003882 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
* * * **
102003947 CTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACA
66 CTCA--ACGTG-TCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA----TTTTTTGAAAACA
* *
102004012 GAAATTGAAAATACCTCAACGTGTC
124 GAAATTGAAATTACCTCAGCGTGTC
* ** *
102004037 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTTTTTTTGAAAATAGAAATTGAAAAT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTG-A-TTTTTTTTTGAAAACAGAAATTGAAAAT
* *
102004102 ACCTCAACGTGTCTTGAGGCTCAACTCATTTCTAGCAATATAAGTTGA-ATTTTGAAAACAGAAA
64 ACCTCAACGTGTC-TGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAA
102004166 TTGAAATTACCTCAGCGTGTC
128 TTGAAATTACCTCAGCGTGTC
** * *
102004187 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA----ATTTTGAAAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
* * *
102004248 CTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAA
66 CTCAACGTGT-CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-TTTTTTGAA-AACAGAAA
102004313 TTGAAATTACCTCAGCGTGTC
128 TTGAAATTACCTCAGCGTGTC
* *
102004334 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTT
102004373 GAAAAACAAA
Statistics
Matches: 295, Mismatches: 30, Indels: 26
0.84 0.09 0.07
Matches are distributed among these distances:
144 64 0.22
145 1 0.00
146 6 0.02
147 60 0.20
149 1 0.00
150 67 0.23
154 1 0.00
155 63 0.21
156 1 0.00
157 31 0.11
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (148 bp):
CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
CTCAACGTGTCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTG
AAATTACCTCAGCGTGTC
Found at i:102004479 original size:69 final size:70
Alignment explanation
Indices: 102004396--102004559 Score: 179
Period size: 72 Copynumber: 2.3 Consensus size: 70
102004386 TAAAAGACTT
* * * **
102004396 AACTCACCTCTCGCAATATGAGTCAATTT-AAAACATAAACTAAAAAAACCTCGGCGTGCCCCGA
1 AACTCACTTCTCGCAATATGAGTCAATTTAAAAAAAAAAACTAAAAAAACCTCAACGTGCCCCGA
102004460 GGCTC
66 GGCTC
* * * * * **
102004465 AACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAAATTAAAAATACCTCAACGTGTCTT
1 AACTCACTTCTCGCAATATGAG-TCAATTT-AAAAAAAAAAACTAAAAAAACCTCAACGTGCCCC
102004530 GAGGCTC
64 GAGGCTC
102004537 AACTCA-TCTCTCGCAATATGAGT
1 AACTCACT-TCTCGCAATATGAGT
102004560 TGATTTTCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
69 21 0.27
70 5 0.06
71 2 0.03
72 51 0.65
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.26
Consensus pattern (70 bp):
AACTCACTTCTCGCAATATGAGTCAATTTAAAAAAAAAAACTAAAAAAACCTCAACGTGCCCCGA
GGCTC
Found at i:102012840 original size:12 final size:12
Alignment explanation
Indices: 102012820--102012855 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
102012810 TGGGATATGC
*
102012820 AATGTATGAATG
1 AATGCATGAATG
102012832 AATGCATGAATG
1 AATGCATGAATG
102012844 AATGCATGAATG
1 AATGCATGAATG
102012856 TCAAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:102014452 original size:16 final size:15
Alignment explanation
Indices: 102014431--102014478 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
102014421 TGATGGAATA
102014431 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
102014447 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
102014462 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
102014478 A
1 A
102014479 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:102014461 original size:8 final size:8
Alignment explanation
Indices: 102014427--102014478 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
102014417 ACAATGATGG
*
102014427 AATAATAA
1 AATATTAA
102014435 AATATATAA
1 AATAT-TAA
102014444 AATA-TAA
1 AATATTAA
102014451 AATATTAA
1 AATATTAA
*
102014459 AATATCAA
1 AATATTAA
*
102014467 AATATTAG
1 AATATTAA
102014475 AATA
1 AATA
102014479 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:102014478 original size:24 final size:24
Alignment explanation
Indices: 102014426--102014482 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
102014416 AACAATGATG
*
102014426 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
102014450 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
102014474 GAATAATAA
1 GAATAATAA
102014483 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:102014643 original size:23 final size:22
Alignment explanation
Indices: 102014592--102014645 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
102014582 ATACTACATC
102014592 AATATGTACATAT-ATA--AAA
1 AATATGTACATATAATATTAAA
**
102014611 AATAAATACATGATAATATTAAA
1 AATATGTACAT-ATAATATTAAA
102014634 AATATGTACATA
1 AATATGTACATA
102014646 ATATAGTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 9 0.33
20 2 0.07
21 3 0.11
22 1 0.04
23 12 0.44
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (22 bp):
AATATGTACATATAATATTAAA
Found at i:102014692 original size:22 final size:24
Alignment explanation
Indices: 102014608--102014693 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 24
102014598 TACATATATA
* *
102014608 AAAAATAAATACATGATAATA--TT
1 AAAAATATATACATAAT-ATAGGTT
*
102014631 AAAAATATGTACATAATATAGTGTT
1 AAAAATATATACATAATATAG-GTT
*
102014656 AAAAATACATACATAATATA-GTT
1 AAAAATATATACATAATATAGGTT
*
102014679 -AAGATATATACATAA
1 AAAAATATATACATAA
102014694 GATAACATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
22 16 0.30
23 17 0.32
25 20 0.38
ACGTcount: A:0.56, C:0.06, G:0.07, T:0.31
Consensus pattern (24 bp):
AAAAATATATACATAATATAGGTT
Found at i:102014744 original size:31 final size:31
Alignment explanation
Indices: 102014682--102014750 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
102014672 TATAGTTAAG
*
102014682 ATATATACATAAGATAACATGTAAAAAATAT
1 ATATATAAATAAGATAACATGTAAAAAATAT
* * *
102014713 ATATATAAATAATATAATAT-T-AAAGATAT
1 ATATATAAATAAGATAACATGTAAAAAATAT
*
102014742 ATAAATAAA
1 ATATATAAA
102014751 ATAGTAATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 15 0.45
30 1 0.03
31 17 0.52
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (31 bp):
ATATATAAATAAGATAACATGTAAAAAATAT
Found at i:102014766 original size:25 final size:25
Alignment explanation
Indices: 102014709--102014767 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
102014699 CATGTAAAAA
* *
102014709 ATATATATATAAATAATATAATATT
1 ATATATATATAAATAAAATAATAAT
* * *
102014734 AAAGATATATAAATAAAATAGTAAT
1 ATATATATATAAATAAAATAATAAT
102014759 ATATATATA
1 ATATATATA
102014768 CGTATATAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.37
Consensus pattern (25 bp):
ATATATATATAAATAAAATAATAAT
Found at i:102014778 original size:25 final size:23
Alignment explanation
Indices: 102014711--102014787 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 23
102014701 TGTAAAAAAT
* *
102014711 ATATATATAAATAATATAATATTA
1 ATATATATATAT-ATATAATAGTA
* * *
102014735 A-AGATATATAAATAAAATAGTA
1 ATATATATATATATATAATAGTA
102014757 ATATATATATACGTATATAATACGTA
1 ATATATATATA--TATATAATA-GTA
102014783 ATATA
1 ATATA
102014788 AATTTAAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
22 10 0.24
23 15 0.37
24 1 0.02
25 7 0.17
26 8 0.20
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATATATATATATATAATAGTA
Found at i:102014845 original size:22 final size:22
Alignment explanation
Indices: 102014781--102014852 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
102014771 ATATAATACG
*
102014781 TAATATAA-ATTTA-AAATATA
1 TAATATAATATTAAGAAATATA
* *
102014801 CCTAATATATTA-AAAGAATATATA
1 --TAATATAATATTAAGAA-ATATA
102014825 TAATATAATATTAAGAAATATAA
1 TAATATAATATTAAGAAATAT-A
102014848 TAATA
1 TAATA
102014853 ACAAAAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
22 21 0.52
23 14 0.35
24 5 0.12
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (22 bp):
TAATATAATATTAAGAAATATA
Found at i:102014850 original size:23 final size:25
Alignment explanation
Indices: 102014807--102014852 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102014797 TATACCTAAT
102014807 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
102014832 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
102014853 ACAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:102015425 original size:30 final size:30
Alignment explanation
Indices: 102015332--102015506 Score: 228
Period size: 30 Copynumber: 5.8 Consensus size: 30
102015322 TAGGTACAAG
* *
102015332 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
102015362 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
102015392 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
* *
102015422 TGGTGGTGGAAAAGGAGTGGCTAGTAGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
102015452 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
102015482 TGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
102015507 TGAGAAAAGT
Statistics
Matches: 129, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
29 2 0.02
30 127 0.98
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:102017285 original size:20 final size:20
Alignment explanation
Indices: 102017256--102017293 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
102017246 GAAAGCTCTT
*
102017256 CGATTAGTCTCGTCGGATCC
1 CGATTAGTCTCGACGGATCC
*
102017276 CGATTTGTCTCGACGGAT
1 CGATTAGTCTCGACGGAT
102017294 GTTCTTTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.32
Consensus pattern (20 bp):
CGATTAGTCTCGACGGATCC
Found at i:102020145 original size:16 final size:14
Alignment explanation
Indices: 102020114--102020164 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 14
102020104 AATTCATCCC
102020114 ATTTAAATTCAAATA
1 ATTTAAATT-AAATA
102020129 ATTTAAATTTAAAATA
1 ATTTAAA-TT-AAATA
*
102020145 ATTCAAA-TAAATA
1 ATTTAAATTAAATA
102020158 ATTTAAA
1 ATTTAAA
102020165 ATGATTTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 11 0.34
14 1 0.03
15 7 0.22
16 13 0.41
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (14 bp):
ATTTAAATTAAATA
Found at i:102021575 original size:125 final size:125
Alignment explanation
Indices: 102021379--102021691 Score: 430
Period size: 125 Copynumber: 2.5 Consensus size: 125
102021369 GCCAAACGGT
* * * *
102021379 AAATCGAAACCCAACACGATTGGGCACGATTTATCGAACTTCCAAATGCGAAATATTATCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTACCTCACT
* * *
102021444 TTAATTTAAGAAAACATGGATGAAATTCCAAAATGATATT-TCGTATTTTAGTCAAATGAA
66 TTAATTTAAGAAAACATAGACGAAATTCCAAAAGGATATTCT-GTATTTTAGTCAAATGAA
* * *
102021504 AAATCGAAACCCAGCATGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTGCCTCGCT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTACCTCACT
* * *
102021569 TTAATTTAAGAGAACATAGACGAAATTTCAAAAGGATATTCTGTATTTTAGTCGAATGAA
66 TTAATTTAAGAAAACATAGACGAAATTCCAAAAGGATATTCTGTATTTTAGTCAAATGAA
* * * * * * *
102021629 AAATTGAAACCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAAAGATTTCCTCA
1 AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTACCTCA
102021692 TGTTGAGGGG
Statistics
Matches: 165, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
125 164 0.99
126 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (125 bp):
AAATCGAAACCCAGCACGATTGGGCACGATTTATCGAACTTCCAAATACGAAATATTACCTCACT
TTAATTTAAGAAAACATAGACGAAATTCCAAAAGGATATTCTGTATTTTAGTCAAATGAA
Found at i:102022271 original size:25 final size:25
Alignment explanation
Indices: 102022243--102022290 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
102022233 CAATTTGTAC
* *
102022243 ATAAAAAATTTTAAAGAAAATATAT
1 ATAAAAAATCTAAAAGAAAATATAT
*
102022268 ATAATAAATCTAAAAGAAAATAT
1 ATAAAAAATCTAAAAGAAAATAT
102022291 TTACATACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (25 bp):
ATAAAAAATCTAAAAGAAAATATAT
Found at i:102022538 original size:21 final size:22
Alignment explanation
Indices: 102022513--102022574 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 22
102022503 AAAAAATGCC
*
102022513 AAATGAATTTAAAGAA-ATAAT
1 AAATGAATTTAAAGAATATAAA
*
102022534 GAATGAATTATAAAGAATATAAA
1 AAATGAATT-TAAAGAATATAAA
102022557 AACATGAATTTTAAAGAA
1 AA-ATGAA-TTTAAAGAA
102022575 CTCAATGGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 8 0.24
22 7 0.21
23 5 0.15
24 12 0.35
25 2 0.06
ACGTcount: A:0.60, C:0.02, G:0.11, T:0.27
Consensus pattern (22 bp):
AAATGAATTTAAAGAATATAAA
Found at i:102022935 original size:17 final size:17
Alignment explanation
Indices: 102022913--102022949 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
102022903 TGCAGACAAA
102022913 TGGGGTAATGGAGTTAG
1 TGGGGTAATGGAGTTAG
102022930 TGGGGTAATGGAGTTAG
1 TGGGGTAATGGAGTTAG
102022947 TGG
1 TGG
102022950 TCGATTTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.49, T:0.30
Consensus pattern (17 bp):
TGGGGTAATGGAGTTAG
Found at i:102023187 original size:20 final size:19
Alignment explanation
Indices: 102023150--102023231 Score: 69
Period size: 20 Copynumber: 4.2 Consensus size: 19
102023140 TTAAGGGTTA
* * *
102023150 TAGGTTCAAGGTTCGAGTT
1 TAGGTTTAAGATTTGAGTT
102023169 TGAGGTTTAAG-TTTAGAGTT
1 T-AGGTTTAAGATTT-GAGTT
102023189 TAGGATTTAAGATTTGAGTT
1 TAGG-TTTAAGATTTGAGTT
*
102023209 TAGGGTTTAA-TTTTGAGGTT
1 TA-GGTTTAAGATTTGA-GTT
102023229 TAG
1 TAG
102023232 AATTTTGAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
19 12 0.22
20 37 0.69
21 5 0.09
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.44
Consensus pattern (19 bp):
TAGGTTTAAGATTTGAGTT
Found at i:102030881 original size:34 final size:35
Alignment explanation
Indices: 102030838--102030905 Score: 84
Period size: 35 Copynumber: 2.0 Consensus size: 35
102030828 TCTTATTTTG
* * *
102030838 TTATTAAA-TTTGTAACTATTTTAGAGGTATTTAC
1 TTATAAAATTTTGCAACTATATTAGAGGTATTTAC
* *
102030872 TTATAAAATTTTGCAACTATATTAGTGTTATTTA
1 TTATAAAATTTTGCAACTATATTAGAGGTATTTA
102030906 AGTATAAAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 7 0.25
35 21 0.75
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.50
Consensus pattern (35 bp):
TTATAAAATTTTGCAACTATATTAGAGGTATTTAC
Found at i:102030912 original size:35 final size:35
Alignment explanation
Indices: 102030846--102030913 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
102030836 TGTTATTAAA
* * **
102030846 TTTGTAACTATTTTAGAGGTATTTACTTATAAAAT
1 TTTGCAACTATATTAGAGGTATTTAAGTATAAAAT
* *
102030881 TTTGCAACTATATTAGTGTTATTTAAGTATAAA
1 TTTGCAACTATATTAGAGGTATTTAAGTATAAA
102030914 GACTTTATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (35 bp):
TTTGCAACTATATTAGAGGTATTTAAGTATAAAAT
Found at i:102034861 original size:30 final size:31
Alignment explanation
Indices: 102034809--102034871 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 31
102034799 AGTCTATATA
*
102034809 TTTATAATTTTAAAAAGATT-AAATCTAATT
1 TTTATAATTTTAAAAAGATTAAAATATAATT
* * *
102034839 TTTATAATTTTAGAAGGGTTAAAATATAATT
1 TTTATAATTTTAAAAAGATTAAAATATAATT
102034870 TT
1 TT
102034872 ATACTTACTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 17 0.61
31 11 0.39
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.48
Consensus pattern (31 bp):
TTTATAATTTTAAAAAGATTAAAATATAATT
Found at i:102035983 original size:17 final size:17
Alignment explanation
Indices: 102035957--102035994 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
102035947 AGTTGATTGA
*
102035957 AAAATAATTAAAATTTT
1 AAAATAATTAAAATTAT
*
102035974 AAAATTATTAAAATTAT
1 AAAATAATTAAAATTAT
102035991 AAAA
1 AAAA
102035995 ACAATAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAATAATTAAAATTAT
Found at i:102035995 original size:9 final size:9
Alignment explanation
Indices: 102035957--102035994 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
102035947 AGTTGATTGA
*
102035957 AAAATAATT
1 AAAATTATT
102035966 AAAATT-TT
1 AAAATTATT
102035974 AAAATTATT
1 AAAATTATT
102035983 AAAATTA-T
1 AAAATTATT
102035991 AAAA
1 AAAA
102035995 ACAATAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
8 13 0.48
9 14 0.52
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
AAAATTATT
Found at i:102038521 original size:12 final size:12
Alignment explanation
Indices: 102038489--102038522 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
102038479 CCCTTAATTA
102038489 ATTTAAATTAAT
1 ATTTAAATTAAT
*
102038501 TTGTTAAATTAAT
1 AT-TTAAATTAAT
102038514 ATTTAAATT
1 ATTTAAATT
102038523 GTATTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (12 bp):
ATTTAAATTAAT
Found at i:102044683 original size:15 final size:16
Alignment explanation
Indices: 102044663--102044692 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
102044653 CTACATAATG
102044663 TATATAA-ATGTAAAA
1 TATATAATATGTAAAA
102044678 TATATAATATGTAAA
1 TATATAATATGTAAA
102044693 TATTTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (16 bp):
TATATAATATGTAAAA
Found at i:102045124 original size:26 final size:26
Alignment explanation
Indices: 102045095--102045145 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
102045085 AAGATTTCGT
* *
102045095 AATAATACGTATGATAGAC-TAAAATA
1 AATAATACATATAATAG-CTTAAAATA
102045121 AATAATACATATAATAGCTTAAAAT
1 AATAATACATATAATAGCTTAAAAT
102045146 GTATATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.29
Consensus pattern (26 bp):
AATAATACATATAATAGCTTAAAATA
Found at i:102050644 original size:16 final size:16
Alignment explanation
Indices: 102050625--102050655 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
102050615 TTTGACTGGC
*
102050625 TTTTTTTTTTCCTTCG
1 TTTTTTTCTTCCTTCG
102050641 TTTTTTTCTTCCTTC
1 TTTTTTTCTTCCTTC
102050656 TCTGTTTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTTTTCTTCCTTCG
Found at i:102053836 original size:15 final size:15
Alignment explanation
Indices: 102053816--102053846 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
102053806 CCAACCTTCA
102053816 AATTTTACCTCAATT
1 AATTTTACCTCAATT
102053831 AATTTTACCTCAATT
1 AATTTTACCTCAATT
102053846 A
1 A
102053847 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTACCTCAATT
Found at i:102056042 original size:11 final size:11
Alignment explanation
Indices: 102056026--102056052 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
102056016 TAGAAATTAG
102056026 TTTGTGAAACT
1 TTTGTGAAACT
102056037 TTTGTGAAACT
1 TTTGTGAAACT
102056048 TTTGT
1 TTTGT
102056053 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:102057584 original size:92 final size:92
Alignment explanation
Indices: 102057448--102057641 Score: 286
Period size: 92 Copynumber: 2.1 Consensus size: 92
102057438 TTGATTTTAG
* *
102057448 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
*
102057512 TAT-TAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
102057539 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
102057604 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
102057632 CAAATTCATA
1 TAAATTCATA
102057642 AACTATAATC
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 17 0.18
92 43 0.46
93 30 0.32
94 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:102057689 original size:48 final size:52
Alignment explanation
Indices: 102057619--102057717 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
102057609 AATAATTATT
102057619 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
102057667 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
102057718 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:102057699 original size:17 final size:17
Alignment explanation
Indices: 102057674--102057707 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
102057664 ATAATTTTAA
*
102057674 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
102057691 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
102057708 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:102057724 original size:17 final size:16
Alignment explanation
Indices: 102057679--102057726 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
102057669 TTTAAATTTT
102057679 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
102057696 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
102057710 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
102057727 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:102057798 original size:18 final size:17
Alignment explanation
Indices: 102057767--102057801 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
102057757 ATTATTAAGA
102057767 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
102057784 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
102057802 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:102057867 original size:129 final size:130
Alignment explanation
Indices: 102057714--102057947 Score: 425
Period size: 129 Copynumber: 1.8 Consensus size: 130
102057704 ATATTAGTTA
*
102057714 TAATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* *
102057779 TATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
*
102057844 TAATAATA-ATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
102057908 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
102057948 TAAATATGAT
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
129 93 0.93
130 7 0.07
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (130 bp):
TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGTATCATATT
Found at i:102057924 original size:18 final size:17
Alignment explanation
Indices: 102057896--102057930 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
102057886 ATTATTAAGA
*
102057896 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
102057913 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
102057931 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:102058042 original size:144 final size:147
Alignment explanation
Indices: 102057884--102058155 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
102057874 ATAAGAATAT
*
102057884 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
102057949 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
102058011 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
102058028 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
102058093 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
102058156 CAATAATCAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 91 0.75
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:102058068 original size:18 final size:17
Alignment explanation
Indices: 102058040--102058074 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
102058030 ATTATTAAGA
*
102058040 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
102058057 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
102058075 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:102058285 original size:44 final size:45
Alignment explanation
Indices: 102058236--102058330 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
102058226 TTACACCTCT
* *
102058236 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
102058280 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
102058325 ATTACA
1 ATTACA
102058331 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:102058330 original size:16 final size:16
Alignment explanation
Indices: 102058311--102058378 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
102058301 GATTTGCTAT
* *
102058311 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
102058327 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
102058343 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
102058359 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
102058375 TACA
1 TACA
102058379 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:102077546 original size:34 final size:34
Alignment explanation
Indices: 102077508--102077575 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
102077498 GATATATGGA
102077508 GATGGAAGATATGGTTCGAATAGAAAGAAGGTAT
1 GATGGAAGATATGGTTCGAATAGAAAGAAGGTAT
*
102077542 GATGGAAGATATGGTTTGAATAGAAAGAAGGTAT
1 GATGGAAGATATGGTTCGAATAGAAAGAAGGTAT
102077576 CATGTGTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.41, C:0.01, G:0.32, T:0.25
Consensus pattern (34 bp):
GATGGAAGATATGGTTCGAATAGAAAGAAGGTAT
Found at i:102080111 original size:61 final size:61
Alignment explanation
Indices: 102080012--102080580 Score: 642
Period size: 61 Copynumber: 9.3 Consensus size: 61
102080002 ACATGGTTGG
* * * *
102080012 ATTTGGCTCTCAGTAGCATATCAGTGAGCCAATTCAGCTCCTTTCATAGTTAGATAACTGA
1 ATTTGGCTCTCAGTAGAATATCAGTGAGCCAATTCAGTTCCTTTCATAGTTACATAGCTGA
* * * * * *
102080073 ATTTGGCTCTCAGTAGCACAACAGTGAGCCAATCCAGCTCCTTTCATAGTTAGATAGCTGA
1 ATTTGGCTCTCAGTAGAATATCAGTGAGCCAATTCAGTTCCTTTCATAGTTACATAGCTGA
** *
102080134 ATTTCACTATCAGTAGAATATCAGTGAGCCAATTCAGTTCCTTTCATAGTTACATAGCTGA
1 ATTTGGCTCTCAGTAGAATATCAGTGAGCCAATTCAGTTCCTTTCATAGTTACATAGCTGA
* * * *
102080195 ATTCGGCTCTCAGTAGAATATCAGTGAGTCAATTAAGTTCCTTTCATAGTTAGATAGCTGA
1 ATTTGGCTCTCAGTAGAATATCAGTGAGCCAATTCAGTTCCTTTCATAGTTACATAGCTGA
* * * * * *
102080256 ATTTGGCTCTAAGTAGAATATCAGTGAGTCGATTCAGCTCCTTCCATAGATACATAGCTGA
1 ATTTGGCTCTCAGTAGAATATCAGTGAGCCAATTCAGTTCCTTTCATAGTTACATAGCTGA
* * ** *
102080317 ATTTGGCTCTCAGTAGAATATCAGTGAGTCTATTCAGCCCCTTTCATAGTTAGATAGCTGA
1 ATTTGGCTCTCAGTAGAATATCAGTGAGCCAATTCAGTTCCTTTCATAGTTACATAGCTGA
* * * * * * * *
102080378 ATTGGGCTCT-TGTATAAAATCAATGAGCCAATTAAGTTCCTTCCAAAGTTACATAGCTGA
1 ATTTGGCTCTCAGTAGAATATCAGTGAGCCAATTCAGTTCCTTTCATAGTTACATAGCTGA
* * * * *
102080438 TTTTGGCTCTAAGTA-ATATATCAGTCAACCAATTCCAGTTCCTTCCATAGTTACATA-CTGA
1 ATTTGGCTCTCAGTAGA-ATATCAGTGAGCCAATT-CAGTTCCTTTCATAGTTACATAGCTGA
* * * * * * *
102080499 ATTCGGTTCTCAGTACAA-ACCAGTGAGTCAATTAAGTTCCTTTCATAGTTTACATAGTTGA
1 ATTTGGCTCTCAGTAGAATATCAGTGAGCCAATTCAGTTCCTTTCATAG-TTACATAGCTGA
*
102080560 ATTTGGCTCTCAGTGGAATAT
1 ATTTGGCTCTCAGTAGAATAT
102080581 ATCAGTCGGT
Statistics
Matches: 429, Mismatches: 72, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
59 13 0.03
60 65 0.15
61 329 0.77
62 22 0.05
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (61 bp):
ATTTGGCTCTCAGTAGAATATCAGTGAGCCAATTCAGTTCCTTTCATAGTTACATAGCTGA
Found at i:102081835 original size:32 final size:32
Alignment explanation
Indices: 102081799--102081859 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
102081789 TAATTCTTTA
102081799 TAAAAATATAAAATAAGTATACAATAACACTT
1 TAAAAATATAAAATAAGTATACAATAACACTT
*
102081831 TAAAAATATAAAATAAGTATACGATAACA
1 TAAAAATATAAAATAAGTATACAATAACA
102081860 TTGTCTAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.61, C:0.08, G:0.05, T:0.26
Consensus pattern (32 bp):
TAAAAATATAAAATAAGTATACAATAACACTT
Found at i:102083877 original size:15 final size:15
Alignment explanation
Indices: 102083857--102083903 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
102083847 TGGTTACTAG
*
102083857 TAATAATAAGGTTAA
1 TAATAATAAGGATAA
*
102083872 TAATAATAATGATAA
1 TAATAATAAGGATAA
* *
102083887 TAATAATGATGATAA
1 TAATAATAAGGATAA
102083902 TA
1 TA
102083904 TATTAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (15 bp):
TAATAATAAGGATAA
Found at i:102083886 original size:12 final size:12
Alignment explanation
Indices: 102083871--102083903 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
102083861 AATAAGGTTA
102083871 ATAATAATAATG
1 ATAATAATAATG
102083883 ATAATAATAATG
1 ATAATAATAATG
*
102083895 ATGATAATA
1 ATAATAATA
102083904 TATTAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (12 bp):
ATAATAATAATG
Found at i:102085638 original size:44 final size:43
Alignment explanation
Indices: 102085503--102085872 Score: 236
Period size: 44 Copynumber: 8.6 Consensus size: 43
102085493 ACCTACTCTG
* * ** * **
102085503 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCA
1 CTGTAACCTCAGGGAGATAAGAT-CTCTGCTTCAATCTGCTCCA
* * ** * *
102085547 CTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCTCTG-CTTCAATCTGCTCCA
*
102085590 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCT-GCTTCAATCTGCTCCA
* * * ** *
102085634 CTGTAACCTCAGGGAGATAAGATCTGAAATTCTCCGGTCTACTCCA
1 CTGTAACCTCAGGGAGATAAGATCT---CTGCTTCAATCTGCTCCA
* * * * * *
102085680 CTGTAACCTTAGGGAAATAAGA-C-CTG-ATGAGATCTTCTCTA
1 CTGTAACCTCAGGGAGATAAGATCTCTGCTTCA-ATCTGCTCCA
* * *
102085721 CTGTAACTTCAGAGAGATAAGATC-CT--TT-AATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTGCTTCAATCTGCTCCA
* * * * * ** *
102085760 TTGTAATCTCAAGGAGATAGGAT-TACTATCTTTGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCT-CT-GCTTCAATCTGCTCCA
* *
102085804 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCTCT-GCTTCAATCTGCTCCA
102085848 CTGTAACCTCAGGGAGATAAGATCT
1 CTGTAACCTCAGGGAGATAAGATCT
102085873 GTATAATGAA
Statistics
Matches: 249, Mismatches: 62, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
39 24 0.10
40 3 0.01
41 27 0.11
42 4 0.02
43 31 0.12
44 125 0.50
45 3 0.01
46 31 0.12
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
CTGTAACCTCAGGGAGATAAGATCTCTGCTTCAATCTGCTCCA
Found at i:102085840 original size:214 final size:214
Alignment explanation
Indices: 102085472--102085873 Score: 619
Period size: 214 Copynumber: 1.9 Consensus size: 214
102085462 CTGCATCTTC
* * *
102085472 AGGGAAATAAGACTTGATGCGACCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
1 AGGGAAATAAGACCTGATGAGACCTACTCTACTGTAACCTCAGAGAGATAAGATCC----TTTTA
* * *
102085537 ATCCACTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
62 ATCCACTCCACTGTAACTTCAAGGAGATAGGATACTATCTTCGATCTGCTCCGCTGTAATCTCAG
102085602 GGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCT
127 GGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCT
102085667 CCGGTCTACTCCACTGTAACCTT
192 CCGGTCTACTCCACTGTAACCTT
* * *
102085690 AGGGAAATAAGACCTGATGAGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCC-TTTAATCC
1 AGGGAAATAAGACCTGATGAGACCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTTTAATCC
* * *
102085754 GCTCCATTGTAA-TCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGG
66 ACTCCACTGTAACT-TCAAGGAGATAGGA-TACTATCTTCGATCTGCTCCGCTGTAATCTCAGGG
*
102085818 AGATAAGATCTCTGGCTTCAATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTG
129 AGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTG
102085874 TATAATGAAC
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
212 1 0.01
213 31 0.18
214 87 0.51
218 50 0.30
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (214 bp):
AGGGAAATAAGACCTGATGAGACCTACTCTACTGTAACCTCAGAGAGATAAGATCCTTTTAATCC
ACTCCACTGTAACTTCAAGGAGATAGGATACTATCTTCGATCTGCTCCGCTGTAATCTCAGGGAG
ATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTCCGG
TCTACTCCACTGTAACCTT
Found at i:102098554 original size:15 final size:15
Alignment explanation
Indices: 102098534--102098580 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
102098524 TGGTTACTAG
*
102098534 TAATAATAAGGTTAA
1 TAATAATAAGGATAA
*
102098549 TAATAATAATGATAA
1 TAATAATAAGGATAA
* *
102098564 TAATAATGATGATAA
1 TAATAATAAGGATAA
102098579 TA
1 TA
102098581 TATTAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (15 bp):
TAATAATAAGGATAA
Found at i:102098563 original size:12 final size:12
Alignment explanation
Indices: 102098548--102098580 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
102098538 AATAAGGTTA
102098548 ATAATAATAATG
1 ATAATAATAATG
102098560 ATAATAATAATG
1 ATAATAATAATG
*
102098572 ATGATAATA
1 ATAATAATA
102098581 TATTAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (12 bp):
ATAATAATAATG
Found at i:102102446 original size:27 final size:28
Alignment explanation
Indices: 102102382--102102448 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 28
102102372 ATCACATCAA
*
102102382 ATACATTAAAAACATTAAAATAAATGTTT
1 ATAC-TTAAAAACATTAAAATAAATATTT
* *
102102411 ATACTTAAATACATTAAAA-AAGTATTT
1 ATACTTAAAAACATTAAAATAAATATTT
*
102102438 ATATTTAAAAA
1 ATACTTAAAAA
102102449 TAACACTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 15 0.45
28 14 0.42
29 4 0.12
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (28 bp):
ATACTTAAAAACATTAAAATAAATATTT
Found at i:102110142 original size:23 final size:23
Alignment explanation
Indices: 102110087--102110144 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
102110077 ATATAACAAC
* *
102110087 AATATGGTAAGATGATAAATGAA
1 AATATGATATGATGATAAATGAA
102110110 AATATGATATGATGATAAATGAA
1 AATATGATATGATGATAAATGAA
*
102110133 AATATTATATGA
1 AATATGATATGA
102110145 ATGTCTTGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.52, C:0.00, G:0.17, T:0.31
Consensus pattern (23 bp):
AATATGATATGATGATAAATGAA
Found at i:102111593 original size:18 final size:19
Alignment explanation
Indices: 102111567--102111602 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
102111557 TAAACTAAAT
*
102111567 TTAACTCCCT-AATTTCAC
1 TTAAATCCCTAAATTTCAC
102111585 TTAAATCCCTAAATTTCA
1 TTAAATCCCTAAATTTCA
102111603 AAATTTTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAAATCCCTAAATTTCAC
Found at i:102112047 original size:17 final size:17
Alignment explanation
Indices: 102112015--102112047 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
102112005 ACTTAAACAT
102112015 TAATATTATAATATATA
1 TAATATTATAATATATA
102112032 TAATACTTATAA-ATAT
1 TAATA-TTATAATATAT
102112048 CTATCTTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
TAATATTATAATATATA
Found at i:102112615 original size:14 final size:15
Alignment explanation
Indices: 102112596--102112624 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
102112586 TTGTTATAAA
102112596 AATATATAA-ATATT
1 AATATATAATATATT
102112610 AATATATAATATATT
1 AATATATAATATATT
102112625 TTTAAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATATATAATATATT
Done.