Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 315 of 352
Found at i:102780218 original size:23 final size:23
Alignment explanation
Indices: 102780145--102780219 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
102780135 TTGTTATTTT
* *
102780145 TATATTATTAGTATTAT-TAGTAT
1 TATA-TATTATTATTATGTAGTAG
*
102780168 TACTATTATTATTATTATGTATTAG
1 TA-TA-TATTATTATTATGTAGTAG
*
102780193 TATATATTTTTATTATGTACGT-G
1 TATATATTATTATTATGTA-GTAG
102780216 TATA
1 TATA
102780220 CATATATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
23 21 0.48
24 17 0.39
25 6 0.14
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (23 bp):
TATATATTATTATTATGTAGTAG
Found at i:102780218 original size:29 final size:26
Alignment explanation
Indices: 102780149--102780208 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
102780139 TATTTTTATA
* *
102780149 TTATTAGTAT-TATTAGTATTACTATTA
1 TTATTATTATGTATTAGTA-TA-TATTT
102780176 TTATTATTATGTATTAGTATATATTT
1 TTATTATTATGTATTAGTATATATTT
102780202 TTATTAT
1 TTATTAT
102780209 GTACGTGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 11 0.37
27 11 0.37
28 8 0.27
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.60
Consensus pattern (26 bp):
TTATTATTATGTATTAGTATATATTT
Found at i:102782052 original size:3 final size:3
Alignment explanation
Indices: 102782038--102782092 Score: 74
Period size: 3 Copynumber: 18.0 Consensus size: 3
102782028 AAATAGATAT
* * *
102782038 TTA TTA TAA TTA TTA TTA TAA TGTA TTA TTA TGA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
102782084 TTA TTA TTA
1 TTA TTA TTA
102782093 ACTAATATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
3 43 0.96
4 2 0.04
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:102782549 original size:22 final size:24
Alignment explanation
Indices: 102782521--102782565 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 24
102782511 CATATGGCAA
102782521 AAATTAAG-TAGAAAAG-AAGTAT
1 AAATTAAGTTAGAAAAGTAAGTAT
102782543 AAATTAAGTTAGAAAAGTAAGTA
1 AAATTAAGTTAGAAAAGTAAGTA
102782566 AACTTAGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.38
23 8 0.38
24 5 0.24
ACGTcount: A:0.58, C:0.00, G:0.18, T:0.24
Consensus pattern (24 bp):
AAATTAAGTTAGAAAAGTAAGTAT
Found at i:102782567 original size:22 final size:22
Alignment explanation
Indices: 102782521--102782576 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 22
102782511 CATATGGCAA
102782521 AAATTAAG-TAGAAAAGAAGTAT
1 AAATTAAGTTAGAAAAGAAG-AT
102782543 AAATTAAGTTAGAAAAGTAAG-T
1 AAATTAAGTTAGAAAAG-AAGAT
102782565 AAACTT-AGTTAG
1 AAA-TTAAGTTAG
102782577 GATTAAATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
22 18 0.58
23 10 0.32
24 3 0.10
ACGTcount: A:0.54, C:0.02, G:0.18, T:0.27
Consensus pattern (22 bp):
AAATTAAGTTAGAAAAGAAGAT
Found at i:102786911 original size:30 final size:33
Alignment explanation
Indices: 102786877--102786942 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
102786867 AGTTTAAGTT
*
102786877 GAAGT-AT-AAAAA-AATTGGAGTATAAATAAA
1 GAAGTGATCAAAAAGAATTGGAGCATAAATAAA
* *
102786907 GAAGTGGTCAAAAAGAATTGGAGCATAAATCAA
1 GAAGTGATCAAAAAGAATTGGAGCATAAATAAA
102786940 GAA
1 GAA
102786943 ACGGTCAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 5 0.17
31 1 0.03
32 5 0.17
33 19 0.63
ACGTcount: A:0.55, C:0.05, G:0.21, T:0.20
Consensus pattern (33 bp):
GAAGTGATCAAAAAGAATTGGAGCATAAATAAA
Found at i:102786949 original size:33 final size:32
Alignment explanation
Indices: 102786884--102786950 Score: 89
Period size: 33 Copynumber: 2.1 Consensus size: 32
102786874 GTTGAAGTAT
* **
102786884 AAAAAAATTGGAGTATAAATAAAGAAGTGGTC
1 AAAAAAATTGGAGCATAAATAAAGAAACGGTC
*
102786916 AAAAAGAATTGGAGCATAAATCAAGAAACGGTC
1 AAAAA-AATTGGAGCATAAATAAAGAAACGGTC
102786949 AA
1 AA
102786951 CTGAAGTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 5 0.17
33 25 0.83
ACGTcount: A:0.54, C:0.07, G:0.21, T:0.18
Consensus pattern (32 bp):
AAAAAAATTGGAGCATAAATAAAGAAACGGTC
Found at i:102787319 original size:36 final size:36
Alignment explanation
Indices: 102787284--102787362 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 36
102787274 AAAATTAGAA
102787284 AAAAATTA-TAAA-AATAATAAAAAATAAAATTTAG
1 AAAAATTATTAAATAATAATAAAAAATAAAATTTAG
** * *
102787318 AAAAATTATTAAATTTTAATAAAATATAAAATTTATT
1 AAAAATTATTAAATAATAATAAAAAATAAAATTTA-G
102787355 AAAAATTA
1 AAAAATTA
102787363 GAATTTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 8 0.21
35 4 0.11
36 18 0.47
37 8 0.21
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (36 bp):
AAAAATTATTAAATAATAATAAAAAATAAAATTTAG
Found at i:102787349 original size:18 final size:18
Alignment explanation
Indices: 102787298--102787351 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
102787288 ATTATAAAAA
*
102787298 TAATAAAAAATAAAA-TT
1 TAATAAAATATAAAATTT
*
102787315 TAGA-AAAATTATTAAATTT
1 TA-ATAAAA-TATAAAATTT
102787334 TAATAAAATATAAAATTT
1 TAATAAAATATAAAATTT
102787352 ATTAAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
17 6 0.20
18 16 0.53
19 8 0.27
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
TAATAAAATATAAAATTT
Found at i:102787359 original size:18 final size:18
Alignment explanation
Indices: 102787301--102787360 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
102787291 ATAAAAATAA
102787301 TAAAAA-ATAAAATTTA-
1 TAAAAATATAAAATTTAT
* *
102787317 GAAAAATTATTAAATTT-T
1 TAAAAA-TATAAAATTTAT
*
102787335 AATAAAATATAAAATTTAT
1 TA-AAAATATAAAATTTAT
102787354 TAAAAAT
1 TAAAAAT
102787361 TAGAATTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 5 0.15
18 23 0.68
19 6 0.18
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
TAAAAATATAAAATTTAT
Found at i:102787377 original size:37 final size:36
Alignment explanation
Indices: 102787298--102787379 Score: 94
Period size: 36 Copynumber: 2.2 Consensus size: 36
102787288 ATTATAAAAA
*
102787298 TAATAAAAAATAAAATTTAGAAAAATTATTAAATTT
1 TAATAAAAAATAAAATTTAGAAAAATTATGAAATTT
* * *
102787334 TAATAAAATATAAAATTTATTAAAAATTA-GAATTTTT
1 TAATAAAAAATAAAATTTA-GAAAAATTATGAA-ATTT
*
102787371 TTATAAAAA
1 TAATAAAAA
102787380 TTGTAAAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (36 bp):
TAATAAAAAATAAAATTTAGAAAAATTATGAAATTT
Found at i:102787534 original size:12 final size:12
Alignment explanation
Indices: 102787517--102787541 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102787507 AAAAATTAAT
102787517 AAAAATTATAAA
1 AAAAATTATAAA
102787529 AAAAATTATAAA
1 AAAAATTATAAA
102787541 A
1 A
102787542 TGCTTCTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAAATTATAAA
Found at i:102787691 original size:29 final size:28
Alignment explanation
Indices: 102787624--102787693 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 28
102787614 TCTTACGACG
*
102787624 TTATAAAATTTTATAATTTGTTTATATTT
1 TTATAAAATTTTATAATTTG-TTAGATTT
* *
102787653 CTAT-ATATTTTATAAATTTG-TACGATTT
1 TTATAAAATTTTAT-AATTTGTTA-GATTT
102787681 TTATAAAATTTTA
1 TTATAAAATTTTA
102787694 ACAAATTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
27 2 0.06
28 15 0.45
29 16 0.48
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (28 bp):
TTATAAAATTTTATAATTTGTTAGATTT
Found at i:102787713 original size:21 final size:21
Alignment explanation
Indices: 102787689--102787731 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
102787679 TTTTATAAAA
*
102787689 TTTTAACAAATTT-TTTATATT
1 TTTTAAC-AATTTATATATATT
*
102787710 TTTTTACAATTTATATATATT
1 TTTTAACAATTTATATATATT
102787731 T
1 T
102787732 CTATTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTAACAATTTATATATATT
Found at i:102787779 original size:35 final size:35
Alignment explanation
Indices: 102787738--102787806 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
102787728 ATTTCTATTT
*
102787738 TTTAATAAT-TTTTTA-ATATTTGAATTTTTAATAAA
1 TTTAATAATATTTATAGAT-TTT-AATTTTTAATAAA
*
102787773 TTTAATAATATTTATAGATTTTAATTTTTTATAA
1 TTTAATAATATTTATAGATTTTAATTTTTAATAA
102787807 TTTTTTAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 20 0.67
36 8 0.27
37 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (35 bp):
TTTAATAATATTTATAGATTTTAATTTTTAATAAA
Found at i:102787956 original size:93 final size:90
Alignment explanation
Indices: 102787816--102788113 Score: 310
Period size: 93 Copynumber: 3.3 Consensus size: 90
102787806 ATTTTTTAAT
* * *
102787816 AAAAGTAGGGGCTTAA-T-TGTTTTTTTTGAAAAAATTTGAGGGTTTTTTTGATGCATTTTGAAA
1 AAAAGTAGGGGCTTAATTCTTTTTTTTTTGAAAAAGTTTGA-GGCTTTTTTGATGCATTTTGAAA
*
102787879 GTTCAAGTACCTAATTAAGTGCAAAA
65 GTTCAAGTACCTAATTGAGTGCAAAA
*
102787905 AAAAGTAGGGGCTTAATTTCTTTTTTTTTTTGAAAAAGTTTGAGCGCTTTTTTGATGTATTTTGA
1 AAAAGTAGGGGCTTAA-TTC-TTTTTTTTTTGAAAAAGTTTGAG-GCTTTTTTGATGCATTTTGA
*
102787970 AAGTTTAAGTA-CTCAATTGAGTGCAAAAAAA
63 AAGTTCAAGTACCT-AATTGAGTGC---AAAA
*
102788001 GAAGAAGTAGGGGCTTAATTGC---TTTTTTTG-AAAAGATTTGAGGACCTTTTTGATGCATTTT
1 -AA-AAGTAGGGGCTTAATT-CTTTTTTTTTTGAAAAAG-TTTGAGG-CTTTTTTGATGCATTTT
* * *
102788062 GAAAGCTCAAGTACGTAAATGAGTGC-AAA
61 GAAAGTTCAAGTACCTAATTGAGTGCAAAA
*
102788091 AAAA--AGGGGCTTAATTATTTTTT
1 AAAAGTAGGGGCTTAATTCTTTTTT
102788114 ATTTATTTAA
Statistics
Matches: 178, Mismatches: 13, Indels: 37
0.78 0.06 0.16
Matches are distributed among these distances:
86 12 0.07
88 5 0.03
89 18 0.10
90 3 0.02
91 1 0.01
92 3 0.02
93 63 0.35
94 49 0.28
95 1 0.01
96 4 0.02
97 4 0.02
98 15 0.08
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.39
Consensus pattern (90 bp):
AAAAGTAGGGGCTTAATTCTTTTTTTTTTGAAAAAGTTTGAGGCTTTTTTGATGCATTTTGAAAG
TTCAAGTACCTAATTGAGTGCAAAA
Found at i:102788062 original size:94 final size:90
Alignment explanation
Indices: 102787816--102788095 Score: 318
Period size: 94 Copynumber: 3.0 Consensus size: 90
102787806 ATTTTTTAAT
* *
102787816 AAAAGTAGGGGCTTAATTGTTTTTTTTGAAAAAATTTGAGGGTTTTTTTGATGCATTTTGAAAGT
1 AAAAGTAGGGGCTTAATTGCTTTTTTTG-AAAAATTTGA-GGCTTTTTTGATGCATTTTGAAAGT
*
102787881 TCAAGTAC-CTAATTAAGTGC---AAAA
64 TCAAGTACTC-AATTGAGTGCAAAAAAA
* *
102787905 AAAAGTAGGGGCTTAATTTCTTTTTTTTTTTGAAAAAGTTTGAGCGCTTTTTTGATGTATTTTGA
1 AAAAGTAGGGGCTTAATTGC----TTTTTTTGAAAAA-TTTGAG-GCTTTTTTGATGCATTTTGA
*
102787970 AAGTTTAAGTACTCAATTGAGTGCAAAAAAA
60 AAGTTCAAGTACTCAATTGAGTGCAAAAAAA
*
102788001 GAAGAAGTAGGGGCTTAATTGCTTTTTTTGAAAAGATTTGAGGACCTTTTTGATGCATTTTGAAA
1 -AA-AAGTAGGGGCTTAATTGCTTTTTTTGAAAA-ATTTGAGG-CTTTTTTGATGCATTTTGAAA
* *
102788066 GCTCAAGTACGT-AAATGAGTGCAAAAAAA
62 GTTCAAGTAC-TCAATTGAGTGCAAAAAAA
102788095 A
1 A
102788096 GGGGCTTAAT
Statistics
Matches: 164, Mismatches: 12, Indels: 26
0.81 0.06 0.13
Matches are distributed among these distances:
89 18 0.11
92 6 0.04
93 53 0.32
94 62 0.38
95 2 0.01
96 4 0.02
97 2 0.01
98 17 0.10
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (90 bp):
AAAAGTAGGGGCTTAATTGCTTTTTTTGAAAAATTTGAGGCTTTTTTGATGCATTTTGAAAGTTC
AAGTACTCAATTGAGTGCAAAAAAA
Found at i:102791104 original size:40 final size:39
Alignment explanation
Indices: 102790972--102791108 Score: 139
Period size: 40 Copynumber: 3.4 Consensus size: 39
102790962 CGCGAGAATA
* * *
102790972 TAAAGTGGATAGGATTCATTCCTGATTCACTATAATACCT
1 TAAAGTGGATAGGATTTATTCCTGATTCACTA-AGTAACT
* * * * * *
102791012 CAAAGTGGATAGAATTTGTTCCTGATTCACCATCGTAATT
1 TAAAGTGGATAGGATTTATTCCTGATTCACTA-AGTAACT
*
102791052 TAAAGTGAATAGGATTTATTCCTGATTCACTAAGGTAACT
1 TAAAGTGGATAGGATTTATTCCTGATTCACTAA-GTAACT
* *
102791092 TAAGGCGGATAGGATTT
1 TAAAGTGGATAGGATTT
102791109 GACCTGAAAA
Statistics
Matches: 77, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (39 bp):
TAAAGTGGATAGGATTTATTCCTGATTCACTAAGTAACT
Found at i:102795833 original size:6 final size:6
Alignment explanation
Indices: 102795822--102795847 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
102795812 CCTTCTATTC
102795822 CCAGCA CCAGCA CCAGCA CCAGCA CC
1 CCAGCA CCAGCA CCAGCA CCAGCA CC
102795848 GCCAGCGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.54, G:0.15, T:0.00
Consensus pattern (6 bp):
CCAGCA
Found at i:102808269 original size:28 final size:28
Alignment explanation
Indices: 102808229--102808293 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
102808219 TATGTCTATT
102808229 TTAATTATATGTCACACGGAAATTTATA
1 TTAATTATATGTCACACGGAAATTTATA
102808257 TTAATTATATGTCACACGGAAATTTATA
1 TTAATTATATGTCACACGGAAATTTATA
102808285 TTAATTATA
1 TTAATTATA
102808294 AGATTTATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (28 bp):
TTAATTATATGTCACACGGAAATTTATA
Found at i:102810890 original size:46 final size:46
Alignment explanation
Indices: 102810840--102810928 Score: 169
Period size: 46 Copynumber: 1.9 Consensus size: 46
102810830 TATTTTTTTT
*
102810840 AAAATGGGTTAGCATTTTTTGCATTTAATATTTAAAATTTGATTTA
1 AAAATGGGTTAGCATTTTTTACATTTAATATTTAAAATTTGATTTA
102810886 AAAATGGGTTAGCATTTTTTACATTTAATATTTAAAATTTGAT
1 AAAATGGGTTAGCATTTTTTACATTTAATATTTAAAATTTGAT
102810929 CTTGTTTTTG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.36, C:0.04, G:0.12, T:0.47
Consensus pattern (46 bp):
AAAATGGGTTAGCATTTTTTACATTTAATATTTAAAATTTGATTTA
Found at i:102813849 original size:685 final size:678
Alignment explanation
Indices: 102812440--102814039 Score: 2026
Period size: 685 Copynumber: 2.3 Consensus size: 678
102812430 GCCTTCTAAA
* * * *
102812440 CCAAATAAAAAAATTAACCTGCGACTGTAATAAATTATTATCATTATTATTACTTTTATTATTTC
1 CCAAATAAAATAATTAACTTGCGACTGTAATAAATTATTATCATTATTATTGCATTTATTATTTC
* * * * * *
102812505 ATATTAGGAAACTTTCTGTTTTGATTCTTTCTGTCATATTTAATGATGCATCCGTTACATTCGTA
66 ATATTTGGAAACTTTCTTTTTTGATTCTTTCTGTCATAATTAAAGATGCATTCGTTACATTCGCA
** * *
102812570 ATATCGTGGCAGACTTTTACAAAGATCTTACAATATACCAAAAACCCTTCATTAAACCTTTTTCT
131 ATATCGTGGTGGACATTTACAAAGAGCTTACAATATACCAAAAACCCTT--TT----C----T-T
*
102812635 TTGTAAGTATAGATATTAGCACGGAAAATTCAAAGG-AAA--AT-A--A---TGATGATGGTGGT
185 TT-TAAGTATAGATATTAGCACGTAAAATTCAAAGGAAAATGATGATGATGGTGATGATGGTGGT
102812691 GGGAGGGAACAACCAATTTATTGCACAAAAGGAGGGTAGAGGGCACTTTAGTAGTAACGGGATGA
249 GGGAGGGAACAACCAATTTATTGCACAAAAGGAGGGTAGAGGGCACTTTAGTAGTAACGGGATGA
* * * *
102812756 ACATCAGCGGTGTTGGCATCAAAAGAGAAGGCAAGGTAGTGTTGAAAAAGAGACCATGGACAGCG
314 ACAACAGCGGTGTTGGCATCAAAAGAGAAGGCAAGATAGTGTTGAAAAAGAGACCATGGACAACA
* * * * * * * * *
102812821 GCGAAGGATGCGGTGTTGTCGGATATGTGAGGAGTTATGGTGAAGGGAAGTGGAATGCTGTGCAA
379 GCAAAAGATGCGATGTTGTCAGATATGTAAGGAGTCATGGTGAACGGAAATGGAATGCAGTGCAA
* *
102812886 AAGAACCCTCCTAAATCAAAACCCCTTTTAAGCACTAATAAGTATTGTTATGTTTTGATTTTGAT
444 AAGAACCCTCCTAAATCAAAACCCCTTTTAAGCACTAATAAGTATTGTTATGTTATGATTTTCAT
* * *
102812951 TTTTTTATAAGATGGTACTTATTGTATTTGATTCGTTTTTTATCGCAATTCAATATTAGGGTAAA
509 TTTTTTATAAGATGGTACTTATTGTATTTGATTCGTTTCTGATCGCAATTCAACATTAGGGTAAA
102813016 ACATGTCTCTTTTTATTGTCAAATTGTACTTTACAAATTTAAAGACAAATTTAAAAGAAAAAAAA
574 ACATG-CTC-TTTTATTGT--AATTGTACTTTACAAATTTAAAGACAAATTTAAAAGAAAAAAAA
102813081 AGTAATCTCACATTGAACTTCAAATTTTCTCTCTATCTTTCAGG
635 AGTAATCTCACATTGAACTTCAAATTTTCTCTCTATCTTTCAGG
*
102813125 TCAAATAAAATAATTAACTTGCGACTGTAATAAATTATTATCATTATTATTGCATTTATTATTTC
1 CCAAATAAAATAATTAACTTGCGACTGTAATAAATTATTATCATTATTATTGCATTTATTATTTC
* *
102813190 ATATTTGGAAACTTTCTTTTTTGATTCTTTCTGTCATAATTAACGATGTATTCGTTACATTCGCA
66 ATATTTGGAAACTTTCTTTTTTGATTCTTTCTGTCATAATTAAAGATGCATTCGTTACATTCGCA
* * *
102813255 ATATCGTGGTGGACATTTACAAAGAGCTTGCAGTATACCAAAAACCCTTTTCTTTTTAAATATAG
131 ATATCGTGGTGGACATTTACAAAGAGCTTACAATATACCAAAAACCCTTTTCTTTTTAAGTATAG
102813320 ATATTAGCACGTAAAATTCAAAGGAAAATGATGATGATGGTGATGGCAATGGTGGTGGGAGGGAA
196 ATATTAGCACGTAAAATTCAAAGGAAAATGATGATGATGGTGAT-G--ATGGTGGTGGGAGGGAA
* *
102813385 CAACCAATTTATTGCACAAAAGGAGGGTAGAGGGTC-C-TTAGGTAGTAATGGGATGAACAACGG
258 CAACCAATTTATTGCACAAAAGGAGGGTAGAGGG-CACTTTA-GTAGTAACGGGATGAACAACAG
* * * * *
102813448 TGGTGTTGGCATCGAAAGAGATGGCGAGATATATAGTGTTGAAAAAGAGACCGTGGACAACAGCA
321 CGGTGTTGGCATCAAAAGAGAAGGC---A-AGATAGTGTTGAAAAAGAGACCATGGACAACAGCA
102813513 AAAGATGCGATGTTGTCAGATATGTAAGGAGTCATGGTGAACGGAAATGGAATGCAGTGCAAAAG
382 AAAGATGCGATGTTGTCAGATATGTAAGGAGTCATGGTGAACGGAAATGGAATGCAGTGCAAAAG
*
102813578 AACCCTCCTAAATCAAAAACCCCTTTTAAGGACTAATAAGTATTGTTATGTTATGATTTTCATTT
447 AACCCTCCTAAATC-AAAACCCCTTTTAAGCACTAATAAGTATTGTTATGTTATGATTTTCA-TT
* * *
102813643 TTTTTATTAGTTGGTACTTATTGTATTTGATTCGTTTCTGATTGCAATTCAACATTAGGGTAAAA
510 TTTTTATAAGATGGTACTTATTGTATTTGATTCGTTTCTGATCGCAATTCAACATTAGGGTAAAA
* * * *
102813708 CATG-TC-TTT-TT-T-ATTGTACTTTACCATTTTAAAGACAATTTTAAAAGGAAAAAAAAGTAA
575 CATGCTCTTTTATTGTAATTGTACTTTACAAATTTAAAGACAAATTTAAAAGAAAAAAAAAGTAA
* * *
102813768 TCTGACATTGAACTTCAAATTTTCTCTCTGTTTTTCAGG
640 TCTCACATTGAACTTCAAATTTTCTCTCTATCTTTCAGG
* * * *
102813807 CCAAATAAAATAATTAATTTGCGACTTTCAT-AA--A-T-T-ATTATTATTGCATTTTTTATTTC
1 CCAAATAAAATAATTAACTTGCGACTGTAATAAATTATTATCATTATTATTGCATTTATTATTTC
** * *
102813866 ATATTTGTTAACTTT-TTGTTTTGATTCTTCCTGTCATAATTAAAGATGCA-TCTATTACATTCG
66 ATATTTGGAAACTTTCTT-TTTTGATTCTTTCTGTCATAATTAAAGATGCATTC-GTTACATTCG
** * * * * ** *
102813929 CAATATCGCAGTGGCCATTCACAAAGAGCTTTCAAAAGCGCTTCATTAAACCCTTTTC-TTTTAA
129 CAATATCGTGGTGGACATTTACAAAGAGCTTACAATA-TAC--CA-AAAACCCTTTTCTTTTTAA
* * *
102813993 GGTATAGATGTTAGCACATAACATTCAAAGGAAAATGATGATGATGG
190 -GTATAGATATTAGCACGTAAAATTCAAAGGAAAATGATGATGATGG
102814040 GTGGGAACAA
Statistics
Matches: 807, Mismatches: 81, Indels: 59
0.85 0.09 0.06
Matches are distributed among these distances:
673 31 0.04
674 6 0.01
675 5 0.01
676 105 0.13
677 3 0.00
678 1 0.00
679 11 0.01
680 53 0.07
681 2 0.00
682 111 0.14
683 3 0.00
684 3 0.00
685 255 0.32
686 3 0.00
687 3 0.00
688 1 0.00
689 102 0.13
690 44 0.05
691 65 0.08
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.35
Consensus pattern (678 bp):
CCAAATAAAATAATTAACTTGCGACTGTAATAAATTATTATCATTATTATTGCATTTATTATTTC
ATATTTGGAAACTTTCTTTTTTGATTCTTTCTGTCATAATTAAAGATGCATTCGTTACATTCGCA
ATATCGTGGTGGACATTTACAAAGAGCTTACAATATACCAAAAACCCTTTTCTTTTTAAGTATAG
ATATTAGCACGTAAAATTCAAAGGAAAATGATGATGATGGTGATGATGGTGGTGGGAGGGAACAA
CCAATTTATTGCACAAAAGGAGGGTAGAGGGCACTTTAGTAGTAACGGGATGAACAACAGCGGTG
TTGGCATCAAAAGAGAAGGCAAGATAGTGTTGAAAAAGAGACCATGGACAACAGCAAAAGATGCG
ATGTTGTCAGATATGTAAGGAGTCATGGTGAACGGAAATGGAATGCAGTGCAAAAGAACCCTCCT
AAATCAAAACCCCTTTTAAGCACTAATAAGTATTGTTATGTTATGATTTTCATTTTTTTATAAGA
TGGTACTTATTGTATTTGATTCGTTTCTGATCGCAATTCAACATTAGGGTAAAACATGCTCTTTT
ATTGTAATTGTACTTTACAAATTTAAAGACAAATTTAAAAGAAAAAAAAAGTAATCTCACATTGA
ACTTCAAATTTTCTCTCTATCTTTCAGG
Found at i:102819675 original size:51 final size:51
Alignment explanation
Indices: 102819604--102819813 Score: 357
Period size: 51 Copynumber: 4.1 Consensus size: 51
102819594 CTGATCACAT
102819604 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
102819655 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
102819706 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * *
102819757 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
102819808 TGATCA
1 TTATCA
102819814 GAAGTACTCA
Statistics
Matches: 151, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 151 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.32
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:102822848 original size:31 final size:31
Alignment explanation
Indices: 102822813--102822889 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
102822803 ACTACTTAAG
*
102822813 TTGGTGTTTATCTTATAGGTATCCTTAACAA
1 TTGGTGTTTATCTTATAGGTATCCTGAACAA
*
102822844 TTGGTGTTTATCTTATATGTATCCTGAACAA
1 TTGGTGTTTATCTTATAGGTATCCTGAACAA
102822875 TTGGTGTTTATCTTA
1 TTGGTGTTTATCTTA
102822890 GTTAGGTTGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.23, C:0.12, G:0.17, T:0.48
Consensus pattern (31 bp):
TTGGTGTTTATCTTATAGGTATCCTGAACAA
Found at i:102822962 original size:22 final size:23
Alignment explanation
Indices: 102822919--102822962 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
102822909 TCCAAGTATG
*
102822919 CTTCTGAAGTTTATAATAATTTA
1 CTTCTGAAGTTGATAATAATTTA
*
102822942 CTTCTTAAGTTGAT-ATAATTT
1 CTTCTGAAGTTGATAATAATTT
102822963 CTTTTGTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (23 bp):
CTTCTGAAGTTGATAATAATTTA
Found at i:102829217 original size:21 final size:21
Alignment explanation
Indices: 102829192--102829234 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
102829182 CTAAAATTTT
* *
102829192 TAAAAATTCTCATTAATCTTA
1 TAAAAATTCTAATTAAACTTA
*
102829213 TAAAAATTTTAATTAAACTTA
1 TAAAAATTCTAATTAAACTTA
102829234 T
1 T
102829235 CATTTTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (21 bp):
TAAAAATTCTAATTAAACTTA
Found at i:102832255 original size:13 final size:14
Alignment explanation
Indices: 102832224--102832259 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
102832214 CCACCCGTAG
102832224 TAATTTCTTTTATAT
1 TAATTT-TTTTATAT
102832239 TAATTTTTTTATA-
1 TAATTTTTTTATAT
102832252 TAATTTTT
1 TAATTTTT
102832260 AAAAAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 8 0.38
14 7 0.33
15 6 0.29
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (14 bp):
TAATTTTTTTATAT
Found at i:102846709 original size:18 final size:19
Alignment explanation
Indices: 102846669--102846740 Score: 69
Period size: 19 Copynumber: 3.8 Consensus size: 19
102846659 TCTATATATT
* *
102846669 TTTTAGAATT-TTTTGAATT
1 TTTTAAAATTATTTT-AATA
102846688 TTTTATAAA-TATTTTAA-A
1 TTTTA-AAATTATTTTAATA
*
102846706 TTTTAAAAATTATTTAAATA
1 TTTT-AAAATTATTTTAATA
102846726 TTTTAAAATTATTTT
1 TTTTAAAATTATTTT
102846741 TATTTTTATT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
18 7 0.16
19 26 0.59
20 11 0.25
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTAAAATTATTTTAATA
Found at i:102846709 original size:19 final size:19
Alignment explanation
Indices: 102846687--102846749 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 19
102846677 TTTTTTGAAT
102846687 TTTTTATAAATATTTTAAA
1 TTTTTATAAATATTTTAAA
*
102846706 -TTTTAAAAAT-TATTTAAA
1 TTTTTATAAATAT-TTTAAA
*
102846724 TATTTTA-AAATTATTTT-TA
1 T-TTTTATAAA-TATTTTAAA
102846743 TTTTTAT
1 TTTTTAT
102846750 TTTGTAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
17 1 0.03
18 20 0.56
19 5 0.14
20 9 0.25
21 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTTATAAATATTTTAAA
Found at i:102846748 original size:38 final size:38
Alignment explanation
Indices: 102846665--102846748 Score: 89
Period size: 38 Copynumber: 2.2 Consensus size: 38
102846655 TAACTCTATA
* * * * *
102846665 TATTTTTTAGAATTTTTTGAATTTTTTATAAATATTTT
1 TATTTTTAAAAATTATTTAAATATTTTATAAATATTTT
* *
102846703 AAATTTTAAAAATTATTTAAATATTTTA-AAATTATTTT
1 TATTTTTAAAAATTATTTAAATATTTTATAAA-TATTTT
102846741 TATTTTTA
1 TATTTTTA
102846749 TTTTGTAAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
37 3 0.08
38 33 0.92
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (38 bp):
TATTTTTAAAAATTATTTAAATATTTTATAAATATTTT
Found at i:102852735 original size:24 final size:24
Alignment explanation
Indices: 102852703--102852748 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
102852693 TTTACGGTTC
102852703 ATATATTAA-TTAAATATTAAATAT
1 ATATATTAAGTTAAAT-TTAAATAT
*
102852727 ATATTTTAAGTTAAATTTAAAT
1 ATATATTAAGTTAAATTTAAAT
102852749 TAAAATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
ATATATTAAGTTAAATTTAAATAT
Found at i:102858607 original size:488 final size:488
Alignment explanation
Indices: 102857691--102858671 Score: 1899
Period size: 488 Copynumber: 2.0 Consensus size: 488
102857681 TCTACCTCCG
*
102857691 GGAAAGTTCCCAATTGGCTGTAAATGGGTCTATAAGATCATGTACGAGGCATCTGGTGAGGTAGA
1 GGAAAGTTCCCAATTGGCTGTAAATGGGTCTATAAGATCATGTACAAGGCATCTGGTGAGGTAGA
* *
102857756 ACGATTTAAGGCTCGCCTTGTAGCCAAAGGTTATAGTCAGAAGGAGGGTGTGGACTATGGGGATA
66 ACGATTTAAGGCTCGCCTTGTAGCCAAAGGTTATAGTCAGAAGGAGGGTATGGACTATGGGGACA
102857821 CTTTCTCTCCTGTTGCTAAACTGGTAACTGTGAGAGCTGTTTTGGCATTGGCTTCTATTTTTCAT
131 CTTTCTCTCCTGTTGCTAAACTGGTAACTGTGAGAGCTGTTTTGGCATTGGCTTCTATTTTTCAT
102857886 TGGCTCTTATTTCAGATGGATGTCTTCAATGCCTTCCTCCAAGGTGATTTGTGTGAGGAGGTTTA
196 TGGCTCTTATTTCAGATGGATGTCTTCAATGCCTTCCTCCAAGGTGATTTGTGTGAGGAGGTTTA
102857951 TATGGAGTTGCCTACTGGTTTTTGCAGTCAAGAGGGAACACTGTTTGTAGATTTCAAAAGTCTCT
261 TATGGAGTTGCCTACTGGTTTTTGCAGTCAAGAGGGAACACTGTTTGTAGATTTCAAAAGTCTCT
*
102858016 TTATGGGTTGAAGCAGGCGTCCAGGTAATGGAATCTGAAGTTAACACAAGCATTGGTTTCTGCTA
326 TTATGGGTTGAAGCAGGCGTCCAGGCAATGGAATCTGAAGTTAACACAAGCATTGGTTTCTGCTA
*
102858081 GATTTCAGCAAAGTAAGTATGATTACTCTTTGTTTACAAAACGACAAGGAGGTAATATAGTTTTG
391 GATTTCAGCAAAGTAAGTATGATTACTCTTTGTTTACAAAACAACAAGGAGGTAATATAGTTTTG
102858146 TTACTCATTTATGTTGATGATTTGGTCATAACT
456 TTACTCATTTATGTTGATGATTTGGTCATAACT
102858179 GGAAAGTTCCCAATTGGCTGTAAATGGGTCTATAAGATCATGTACAAGGCATCTGGTGAGGTAGA
1 GGAAAGTTCCCAATTGGCTGTAAATGGGTCTATAAGATCATGTACAAGGCATCTGGTGAGGTAGA
102858244 ACGATTTAAGGCTCGCCTTGTAGCCAAAGGTTATAGTCAGAAGGAGGGTATGGACTATGGGGACA
66 ACGATTTAAGGCTCGCCTTGTAGCCAAAGGTTATAGTCAGAAGGAGGGTATGGACTATGGGGACA
102858309 CTTTCTCTCCTGTTGCTAAACTGGTAACTGTGAGAGCTGTTTTGGCATTGGCTTCTATTTTTCAT
131 CTTTCTCTCCTGTTGCTAAACTGGTAACTGTGAGAGCTGTTTTGGCATTGGCTTCTATTTTTCAT
102858374 TGGCTCTTATTTCAGATGGATGTCTTCAATGCCTTCCTCCAAGGTGATTTGTGTGAGGAGGTTTA
196 TGGCTCTTATTTCAGATGGATGTCTTCAATGCCTTCCTCCAAGGTGATTTGTGTGAGGAGGTTTA
102858439 TATGGAGTTGCCTACTGGTTTTTGCAGTCAAGAGGGAACACTGTTTGTAGATTTCAAAAGTCTCT
261 TATGGAGTTGCCTACTGGTTTTTGCAGTCAAGAGGGAACACTGTTTGTAGATTTCAAAAGTCTCT
*
102858504 TTATGGGTTGAAGCAGGCGTCCAGGCAATGGAATCTGAAGTTGACACAAGCATTGGTTTCTGCTA
326 TTATGGGTTGAAGCAGGCGTCCAGGCAATGGAATCTGAAGTTAACACAAGCATTGGTTTCTGCTA
*
102858569 GATTTCAGCAAAGTAAGTATGATTACTCTTTGTTTACAAAACAACAAGGAGGTAATGTAGTTTTG
391 GATTTCAGCAAAGTAAGTATGATTACTCTTTGTTTACAAAACAACAAGGAGGTAATATAGTTTTG
102858634 TTACTCATTTATGTTGATGATTTGGTCATAACT
456 TTACTCATTTATGTTGATGATTTGGTCATAACT
102858667 GGAAA
1 GGAAA
102858672 TGATGAGGTT
Statistics
Matches: 486, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
488 486 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (488 bp):
GGAAAGTTCCCAATTGGCTGTAAATGGGTCTATAAGATCATGTACAAGGCATCTGGTGAGGTAGA
ACGATTTAAGGCTCGCCTTGTAGCCAAAGGTTATAGTCAGAAGGAGGGTATGGACTATGGGGACA
CTTTCTCTCCTGTTGCTAAACTGGTAACTGTGAGAGCTGTTTTGGCATTGGCTTCTATTTTTCAT
TGGCTCTTATTTCAGATGGATGTCTTCAATGCCTTCCTCCAAGGTGATTTGTGTGAGGAGGTTTA
TATGGAGTTGCCTACTGGTTTTTGCAGTCAAGAGGGAACACTGTTTGTAGATTTCAAAAGTCTCT
TTATGGGTTGAAGCAGGCGTCCAGGCAATGGAATCTGAAGTTAACACAAGCATTGGTTTCTGCTA
GATTTCAGCAAAGTAAGTATGATTACTCTTTGTTTACAAAACAACAAGGAGGTAATATAGTTTTG
TTACTCATTTATGTTGATGATTTGGTCATAACT
Found at i:102876852 original size:14 final size:14
Alignment explanation
Indices: 102876821--102876862 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
102876811 TGTTTTACTT
*
102876821 AAAATAATTTTCTCA
1 AAAATAATTTT-TTA
102876836 AAAATAATTTTTTA
1 AAAATAATTTTTTA
102876850 AAAATAATTTTTT
1 AAAATAATTTTTT
102876863 TTTGGAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (14 bp):
AAAATAATTTTTTA
Found at i:102876862 original size:15 final size:15
Alignment explanation
Indices: 102876821--102876863 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
102876811 TGTTTTACTT
* *
102876821 AAAATAATTTTCTCA
1 AAAATAATTTTTTTA
102876836 AAAATAA-TTTTTTA
1 AAAATAATTTTTTTA
102876850 AAAATAATTTTTTT
1 AAAATAATTTTTTT
102876864 TTGGAAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.49
Consensus pattern (15 bp):
AAAATAATTTTTTTA
Found at i:102876919 original size:23 final size:25
Alignment explanation
Indices: 102876878--102876943 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 25
102876868 AAAAAGTGAG
* *
102876878 ATTTAAAAAAATAAATAATCTTT-AT
1 ATTTATAAAAA-AATTAATCTTTAAT
* * *
102876903 TTTTAT-TAAAAATTAATTTTTAAT
1 ATTTATAAAAAAATTAATCTTTAAT
102876927 ATTTATAAAAAAATTAA
1 ATTTATAAAAAAATTAA
102876944 ATAAAATAAG
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
23 9 0.28
24 10 0.31
25 13 0.41
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATTTATAAAAAAATTAATCTTTAAT
Found at i:102878256 original size:15 final size:14
Alignment explanation
Indices: 102878236--102878287 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 14
102878226 GTTTATGAAC
102878236 TTTAATTTGGTTAAT
1 TTTAATTT-GTTAAT
102878251 TTTAATTT-TTATATTT
1 TTTAATTTGTTA-A--T
102878267 TTTGAATTTGTTAAT
1 TTT-AATTTGTTAAT
102878282 TTTAAT
1 TTTAAT
102878288 ATTTTTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
13 3 0.09
14 4 0.12
15 12 0.38
16 4 0.12
17 6 0.19
18 3 0.09
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (14 bp):
TTTAATTTGTTAAT
Found at i:102878283 original size:17 final size:16
Alignment explanation
Indices: 102878250--102878307 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 16
102878240 ATTTGGTTAA
102878250 TTTTAATTTTTATATT
1 TTTTAATTTTTATATT
102878266 TTTTGAATTTGTTA-A--
1 TTTT-AATTT-TTATATT
102878281 TTTTAATATTTT-TATT
1 TTTTAAT-TTTTATATT
102878297 TTTTAAATTTT
1 TTTT-AATTTT
102878308 GAAATTTTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
14 6 0.17
15 6 0.17
16 11 0.31
17 9 0.26
18 3 0.09
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTAATTTTTATATT
Found at i:102878297 original size:31 final size:32
Alignment explanation
Indices: 102878239--102878306 Score: 104
Period size: 31 Copynumber: 2.2 Consensus size: 32
102878229 TATGAACTTT
*
102878239 AATTTGGTTAATTTTAATTTTTATATTTTTTG
1 AATTTGGTTAATTTTAATTTTTATATTTTTTA
102878271 AATTT-GTTAATTTTAATATTTT-TATTTTTTA
1 AATTTGGTTAATTTTAAT-TTTTATATTTTTTA
102878302 AATTT
1 AATTT
102878307 TGAAATTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 25 0.74
32 9 0.26
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (32 bp):
AATTTGGTTAATTTTAATTTTTATATTTTTTA
Found at i:102878314 original size:31 final size:31
Alignment explanation
Indices: 102878239--102878316 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
102878229 TATGAACTTT
* *
102878239 AATTTGGTTAATTTTAATTTTTATATTTTTTG
1 AATTT-GTAAATTTTAATTTTTATATTTTTTA
*
102878271 AATTTGTTAATTTTAATATTTT-TATTTTTTA
1 AATTTGTAAATTTTAAT-TTTTATATTTTTTA
102878302 AATTT-TGAAATTTTA
1 AATTTGT-AAATTTTA
102878317 GTCTTGACCC
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
30 1 0.02
31 32 0.76
32 9 0.21
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.64
Consensus pattern (31 bp):
AATTTGTAAATTTTAATTTTTATATTTTTTA
Found at i:102883383 original size:24 final size:24
Alignment explanation
Indices: 102883356--102883402 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
102883346 TTGTTTTATT
102883356 TTTTAAACTTATTTAAAAAATTAG
1 TTTTAAACTTATTTAAAAAATTAG
* * *
102883380 TTTTTAATTTATTTTAAAAATTA
1 TTTTAAACTTATTTAAAAAATTA
102883403 ATTTGCAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (24 bp):
TTTTAAACTTATTTAAAAAATTAG
Found at i:102891926 original size:19 final size:19
Alignment explanation
Indices: 102891897--102891939 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
102891887 GGATATATTT
102891897 TAAAT-TTATTTAAATAGA
1 TAAATCTTATTTAAATAGA
**
102891915 TAAATCTTATTTAGGTAGA
1 TAAATCTTATTTAAATAGA
102891934 TAAATC
1 TAAATC
102891940 ATTAGAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (19 bp):
TAAATCTTATTTAAATAGA
Found at i:102893492 original size:19 final size:19
Alignment explanation
Indices: 102893463--102893508 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
102893453 GGATATATTT
102893463 TAAAT-TTATTTAGATAGA
1 TAAATCTTATTTAGATAGA
*
102893481 TAAATCTTATTTAGGTAGA
1 TAAATCTTATTTAGATAGA
102893500 TAAATCTTA
1 TAAATCTTA
102893509 GAATAAATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.41, C:0.04, G:0.11, T:0.43
Consensus pattern (19 bp):
TAAATCTTATTTAGATAGA
Found at i:102896924 original size:13 final size:13
Alignment explanation
Indices: 102896908--102896932 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
102896898 TAATCTATAG
102896908 ACGTTATTTTTAC
1 ACGTTATTTTTAC
102896921 ACGTTATTTTTA
1 ACGTTATTTTTA
102896933 TATTTTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.56
Consensus pattern (13 bp):
ACGTTATTTTTAC
Found at i:102908131 original size:4 final size:4
Alignment explanation
Indices: 102908122--102908146 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
102908112 AATACATAAT
102908122 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
102908147 TAATTGACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:102915429 original size:21 final size:21
Alignment explanation
Indices: 102915403--102915443 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
102915393 TAACGGGAGT
102915403 GCTGACGTGGCAAGTTAACTA
1 GCTGACGTGGCAAGTTAACTA
*
102915424 GCTGACGTGGCCAGTTAACT
1 GCTGACGTGGCAAGTTAACT
102915444 TGCCACGTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (21 bp):
GCTGACGTGGCAAGTTAACTA
Found at i:102915721 original size:14 final size:15
Alignment explanation
Indices: 102915702--102915730 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
102915692 CACAAAAAAC
102915702 CAGAGGAA-AAGAAG
1 CAGAGGAAGAAGAAG
102915716 CAGAGGAAGAAGAAG
1 CAGAGGAAGAAGAAG
102915731 AAGATGAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.07, G:0.38, T:0.00
Consensus pattern (15 bp):
CAGAGGAAGAAGAAG
Found at i:102915739 original size:15 final size:15
Alignment explanation
Indices: 102915703--102915749 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
102915693 ACAAAAAACC
*
102915703 AGAGGAA-AAGAAGC
1 AGAGGAAGAAGAAGA
102915717 AGAGGAAGAAGAAGA
1 AGAGGAAGAAGAAGA
* * *
102915732 AGATGAAGTAGTAGA
1 AGAGGAAGAAGAAGA
102915747 AGA
1 AGA
102915750 AGGAGCTACA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 7 0.25
15 21 0.75
ACGTcount: A:0.55, C:0.02, G:0.36, T:0.06
Consensus pattern (15 bp):
AGAGGAAGAAGAAGA
Found at i:102921971 original size:7 final size:7
Alignment explanation
Indices: 102921952--102922019 Score: 82
Period size: 7 Copynumber: 9.3 Consensus size: 7
102921942 TTGATGACCT
102921952 TAAACCC
1 TAAACCC
102921959 TAAAACCC
1 T-AAACCC
102921967 TAAACCC
1 TAAACCC
*
102921974 TAAAACCT
1 T-AAACCC
102921982 TAAACCC
1 TAAACCC
*
102921989 TAAATCC
1 TAAACCC
102921996 TAAAACCC
1 T-AAACCC
*
102922004 TAAACCA
1 TAAACCC
102922011 TAAACCC
1 TAAACCC
102922018 TA
1 TA
102922020 TGTTTATAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
7 33 0.63
8 19 0.37
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:102921972 original size:15 final size:15
Alignment explanation
Indices: 102921952--102922019 Score: 86
Period size: 15 Copynumber: 4.6 Consensus size: 15
102921942 TTGATGACCT
102921952 TAAACCCTAAAACCC
1 TAAACCCTAAAACCC
*
102921967 TAAACCCTAAAACCT
1 TAAACCCTAAAACCC
*
102921982 TAAACCCT-AAATCC
1 TAAACCCTAAAACCC
*
102921996 TAAAACCCT-AAACCA
1 T-AAACCCTAAAACCC
102922011 TAAACCCTA
1 TAAACCCTA
102922020 TGTTTATAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
14 12 0.26
15 34 0.74
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (15 bp):
TAAACCCTAAAACCC
Found at i:102921986 original size:22 final size:22
Alignment explanation
Indices: 102921952--102922019 Score: 91
Period size: 22 Copynumber: 3.1 Consensus size: 22
102921942 TTGATGACCT
* *
102921952 TAAACCCTAAAACCCTAAACCC
1 TAAAACCTTAAACCCTAAACCC
*
102921974 TAAAACCTTAAACCCTAAATCC
1 TAAAACCTTAAACCCTAAACCC
* *
102921996 TAAAACCCTAAACCATAAACCC
1 TAAAACCTTAAACCCTAAACCC
102922018 TA
1 TA
102922020 TGTTTATAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (22 bp):
TAAAACCTTAAACCCTAAACCC
Found at i:102923794 original size:13 final size:13
Alignment explanation
Indices: 102923776--102923804 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
102923766 TTTTTTTATA
102923776 TTAAAATATTTTT
1 TTAAAATATTTTT
102923789 TTAAAATATTTTT
1 TTAAAATATTTTT
102923802 TTA
1 TTA
102923805 TTGGTGGCGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTAAAATATTTTT
Found at i:102924011 original size:38 final size:37
Alignment explanation
Indices: 102923969--102924086 Score: 102
Period size: 38 Copynumber: 3.2 Consensus size: 37
102923959 AAACATTTAC
*
102923969 ATTACTAAAAACTCACAAAATACAACAATTTATAATGA
1 ATTACTAAAAACTCACAAAACACAACAATTTATAAT-A
* *** * *
102924007 ATTACTAATAAAAT-ATTTAACAAAATAATTT-TACAT-
1 ATTACTAA-AAACTCACAAAACACAACAATTTATA-ATA
102924043 -TT-CTAAAAACTCACAAAACACAACAATTTATAATAA
1 ATTACTAAAAACTCACAAAACACAACAATTTATAAT-A
102924079 ATTACTAA
1 ATTACTAA
102924087 CAAATTTTTT
Statistics
Matches: 59, Mismatches: 13, Indels: 16
0.67 0.15 0.18
Matches are distributed among these distances:
33 4 0.07
34 18 0.31
35 4 0.07
37 4 0.07
38 25 0.42
39 4 0.07
ACGTcount: A:0.54, C:0.14, G:0.01, T:0.31
Consensus pattern (37 bp):
ATTACTAAAAACTCACAAAACACAACAATTTATAATA
Found at i:102924058 original size:72 final size:72
Alignment explanation
Indices: 102923964--102924135 Score: 274
Period size: 72 Copynumber: 2.4 Consensus size: 72
102923954 TTTTAAAACA
* * *
102923964 TTTACATTACTAAAAACTCACAAAATACAACAATTTATAATGAATTACTAATAAAATATTTAACA
1 TTTACATTTCTAAAAACTCACAAAATACAACAATTTATAATAAATTACTAACAAAATATTTAACA
102924029 AAATAAT
66 AAATAAT
* * *
102924036 TTTACATTTCTAAAAACTCACAAAACACAACAATTTATAATAAATTACTAACAAATTTTTTAACA
1 TTTACATTTCTAAAAACTCACAAAATACAACAATTTATAATAAATTACTAACAAAATATTTAACA
102924101 AAATAAT
66 AAATAAT
102924108 TTTACATTAT-TAAAAACTCACAAAATAC
1 TTTACATT-TCTAAAAACTCACAAAATAC
102924136 TAAACTCAAC
Statistics
Matches: 92, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
72 91 0.99
73 1 0.01
ACGTcount: A:0.52, C:0.15, G:0.01, T:0.33
Consensus pattern (72 bp):
TTTACATTTCTAAAAACTCACAAAATACAACAATTTATAATAAATTACTAACAAAATATTTAACA
AAATAAT
Found at i:102924188 original size:34 final size:32
Alignment explanation
Indices: 102924150--102924255 Score: 82
Period size: 34 Copynumber: 3.4 Consensus size: 32
102924140 CTCAACACAA
102924150 TAATTTATAATATAATCCTAAATTACTAATAAAT
1 TAATTTATAATATAAT-CTAAATTACTAA-AAAT
* *
102924184 TAATTT-TAAAATAAT-TATAA--AC--ACAA-
1 TAATTTATAATATAATCTA-AATTACTAAAAAT
102924210 TAATTTATAATATAATCTTAAATTACTAACAAAT
1 TAATTTATAATATAATC-TAAATTACTAA-AAAT
* *
102924244 TATTTTAAAATA
1 TAATTTATAATA
102924256 ATTATAAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 20
0.68 0.07 0.24
Matches are distributed among these distances:
26 6 0.11
27 10 0.18
28 3 0.05
29 2 0.04
30 4 0.07
31 2 0.04
32 3 0.05
33 10 0.18
34 16 0.29
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.41
Consensus pattern (32 bp):
TAATTTATAATATAATCTAAATTACTAAAAAT
Found at i:102924213 original size:60 final size:59
Alignment explanation
Indices: 102924143--102924263 Score: 215
Period size: 60 Copynumber: 2.0 Consensus size: 59
102924133 TACTAAACTC
*
102924143 AACACAATAATTTATAATATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTATA
1 AACACAATAATTTATAATATAATCCTAAATTACTAACAAATT-ATTTTAAAATAATTATA
*
102924203 AACACAATAATTTATAATATAATCTTAAATTACTAACAAATTATTTTAAAATAATTATA
1 AACACAATAATTTATAATATAATCCTAAATTACTAACAAATTATTTTAAAATAATTATA
102924262 AA
1 AA
102924264 AATTACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
59 19 0.32
60 40 0.68
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (59 bp):
AACACAATAATTTATAATATAATCCTAAATTACTAACAAATTATTTTAAAATAATTATA
Found at i:102924493 original size:26 final size:24
Alignment explanation
Indices: 102924454--102924501 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 24
102924444 CCGTTAACTG
102924454 TATTTTTATCAATATATATATTTAAA
1 TATTTTTATCAATA-ATAT-TTTAAA
102924480 TATTTTTAAT-AATAATATTTTA
1 TATTTTT-ATCAATAATATTTTA
102924502 TTTAAAGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 4 0.19
25 4 0.19
26 11 0.52
27 2 0.10
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
TATTTTTATCAATAATATTTTAAA
Found at i:102929098 original size:17 final size:17
Alignment explanation
Indices: 102929076--102929110 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
102929066 ATACATGGGT
102929076 CAAATTTCAAACATGAA
1 CAAATTTCAAACATGAA
102929093 CAAATTTCAAACATGAA
1 CAAATTTCAAACATGAA
102929110 C
1 C
102929111 CTTACTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.20, G:0.06, T:0.23
Consensus pattern (17 bp):
CAAATTTCAAACATGAA
Found at i:102932755 original size:11 final size:11
Alignment explanation
Indices: 102932739--102932922 Score: 135
Period size: 11 Copynumber: 16.7 Consensus size: 11
102932729 CCTAAGTATA
102932739 AAAACAGCACC
1 AAAACAGCACC
*
102932750 AAAACAGCAAC
1 AAAACAGCACC
*
102932761 AAAACAACACC
1 AAAACAGCACC
102932772 AAAACAGCACC
1 AAAACAGCACC
**
102932783 -AAACAGCATA
1 AAAACAGCACC
* *
102932793 AAAATAGCACA
1 AAAACAGCACC
102932804 AACAACAGCACC
1 AA-AACAGCACC
* *
102932816 AATACAGCAAC
1 AAAACAGCACC
102932827 AAAACAGCACC
1 AAAACAGCACC
**
102932838 -AAACAGCATA
1 AAAACAGCACC
* *
102932848 AAAATAGCACAA
1 AAAACAGCAC-C
*
102932860 AAAACAGCACT
1 AAAACAGCACC
*
102932871 AAACAGCATCACC
1 AAA-A-CAGCACC
*
102932884 AGAA-A-CACC
1 AAAACAGCACC
* *
102932893 AAAATAGCACAA
1 AAAACAGCAC-C
102932905 AAAACAGCACC
1 AAAACAGCACC
102932916 -AAACAGC
1 AAAACAGC
102932923 TATTCTTAGA
Statistics
Matches: 137, Mismatches: 27, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
9 7 0.05
10 25 0.18
11 68 0.50
12 30 0.22
13 7 0.05
ACGTcount: A:0.58, C:0.29, G:0.09, T:0.04
Consensus pattern (11 bp):
AAAACAGCACC
Found at i:102932895 original size:55 final size:55
Alignment explanation
Indices: 102932736--102932878 Score: 200
Period size: 55 Copynumber: 2.6 Consensus size: 55
102932726 ATACCTAAGT
* * * * * *
102932736 ATAAAAACAGCAC-CAAAACAGCAACAAAACAACACCAAAACAGCACCAAACAGC
1 ATAAAAATAGCACAAAAAACAGCACCAATACAGCAACAAAACAGCACCAAACAGC
*
102932790 ATAAAAATAGCACAAACAACAGCACCAATACAGCAACAAAACAGCACCAAACAGC
1 ATAAAAATAGCACAAAAAACAGCACCAATACAGCAACAAAACAGCACCAAACAGC
*
102932845 ATAAAAATAGCACAAAAAACAGCACTAA-ACAGCA
1 ATAAAAATAGCACAAAAAACAGCACCAATACAGCA
102932879 TCACCAGAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 18 0.23
55 61 0.77
ACGTcount: A:0.59, C:0.28, G:0.08, T:0.05
Consensus pattern (55 bp):
ATAAAAATAGCACAAAAAACAGCACCAATACAGCAACAAAACAGCACCAAACAGC
Found at i:102932915 original size:23 final size:23
Alignment explanation
Indices: 102932838--102932918 Score: 69
Period size: 23 Copynumber: 3.6 Consensus size: 23
102932828 AAACAGCACC
**
102932838 AAACAGCATAAAAATAGCACAAA
1 AAACAGCACCAAAATAGCACAAA
* * *
102932861 AAACAGCA-CTAAACAGCATCACCA
1 AAACAGCACCAAAATAGCA-CA-AA
*
102932885 GAA-A-CACCAAAATAGCACAAA
1 AAACAGCACCAAAATAGCACAAA
102932906 AAACAGCACCAAA
1 AAACAGCACCAAA
102932919 CAGCTATTCT
Statistics
Matches: 44, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
21 3 0.07
22 12 0.27
23 26 0.59
24 3 0.07
ACGTcount: A:0.59, C:0.26, G:0.09, T:0.06
Consensus pattern (23 bp):
AAACAGCACCAAAATAGCACAAA
Found at i:102938814 original size:43 final size:43
Alignment explanation
Indices: 102938767--102939014 Score: 207
Period size: 43 Copynumber: 5.8 Consensus size: 43
102938757 CCCTCGAACA
* * * *
102938767 CCGCTATAGAATGTTACCTTTAGCAGCGCTTTTACAACTAATG
1 CCGCTATAGAACGTTACCTTTAGCAGCGCTTTTCCAACAAACG
* * ** ***
102938810 CCGCTATAGAAC-TTGACCTTCAGCGGCATTTTTCTTTCAAACG
1 CCGCTATAGAACGTT-ACCTTTAGCAGCGCTTTTCCAACAAACG
* *
102938853 CCGCTATAGAACATTACCTTTAGTA--GCTTTTCCAACAAACG
1 CCGCTATAGAACGTTACCTTTAGCAGCGCTTTTCCAACAAACG
* * * * * * *
102938894 ACACTATAGAACGTGACATTTAGCGGCGCTTTGCCTACAAACG
1 CCGCTATAGAACGTTACCTTTAGCAGCGCTTTTCCAACAAACG
* * *
102938937 CAGCTATAGAATGTGT-CCTTTAGCAGCGCTTTTCCCACAAACG
1 CCGCTATAGAACGT-TACCTTTAGCAGCGCTTTTCCAACAAACG
* * * *
102938980 CTGCTATAGAACGTTGCCTTTAGCGGTGCTTTTCC
1 CCGCTATAGAACGTTACCTTTAGCAGCGCTTTTCC
102939015 CACACATGTC
Statistics
Matches: 158, Mismatches: 41, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
41 29 0.18
42 3 0.02
43 124 0.78
44 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (43 bp):
CCGCTATAGAACGTTACCTTTAGCAGCGCTTTTCCAACAAACG
Found at i:102939011 original size:86 final size:86
Alignment explanation
Indices: 102938768--102939099 Score: 259
Period size: 86 Copynumber: 3.9 Consensus size: 86
102938758 CCTCGAACAC
* * * * *
102938768 CGCTATAGAATGTTACCTTTAGCAGCGCTTTTACAACTAATGCCGCTATAGAAC-TTGACCTTCA
1 CGCTATAGAATGTTACCTTTAGCAGCGCTTTTCCAACAAACGCTGCTATAGAACGTTGACCTTTA
** * *
102938832 GCGGCATTTTTCTTTCAAACG
66 GCGGCGCTTTTCCTACAAACG
** * * *
102938853 CCGCTATAGAACATTACCTTTAGTA--GCTTTTCCAACAAACGAC-ACTATAGAACG-TGACATT
1 -CGCTATAGAATGTTACCTTTAGCAGCGCTTTTCCAACAAACG-CTGCTATAGAACGTTGACCTT
*
102938914 TAGCGGCGCTTTGCCTACAAACG
64 TAGCGGCGCTTTTCCTACAAACG
*
102938937 CAGCTATAGAATGTGT-CCTTTAGCAGCGCTTTTCCCACAAACGCTGCTATAGAACGTTG-CCTT
1 C-GCTATAGAATGT-TACCTTTAGCAGCGCTTTTCCAACAAACGCTGCTATAGAACGTTGACCTT
* * * *
102939000 TAGCGGTGCTTTTCCCACACATG
64 TAGCGGCGCTTTTCCTACAAACG
* * ** ** * * * **
102939023 TCGCTATAAAAAGTGGCCTTTAGC-GACGCTTTTCCCGCAAATGCTGTTATAGAGC-TTGATTTT
1 -CGCTATAGAATGTTACCTTTAGCAG-CGCTTTTCCAACAAACGCTGCTATAGAACGTTGACCTT
*
102939086 TAGCGGCGCCTTTC
64 TAGCGGCGCTTTTC
102939100 ACAAAAAAGC
Statistics
Matches: 198, Mismatches: 36, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
83 1 0.01
84 63 0.32
85 7 0.04
86 124 0.63
87 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (86 bp):
CGCTATAGAATGTTACCTTTAGCAGCGCTTTTCCAACAAACGCTGCTATAGAACGTTGACCTTTA
GCGGCGCTTTTCCTACAAACG
Found at i:102939015 original size:43 final size:43
Alignment explanation
Indices: 102938769--102939075 Score: 187
Period size: 43 Copynumber: 7.2 Consensus size: 43
102938759 CTCGAACACC
* * * * * * * *
102938769 GCTATAGAATGTTACCTTTAGCAGCGCTTTTACAACTAATGCC
1 GCTATAGAACGTTGCCTTTAGCGGCGCTTTTCCCACAAACGCT
* ** *** *
102938812 GCTATAGAAC-TTGACCTTCAGCGGCATTTTTCTTTCAAACGCC
1 GCTATAGAACGTTG-CCTTTAGCGGCGCTTTTCCCACAAACGCT
* * ** *
102938855 GCTATAGAACATTACCTTTA--GTAGCTTTTCCAACAAACGAC-
1 GCTATAGAACGTTGCCTTTAGCGGCGCTTTTCCCACAAACG-CT
* * * * *
102938896 ACTATAGAACG-TGACATTTAGCGGCGCTTTGCCTACAAACGCA
1 GCTATAGAACGTTG-CCTTTAGCGGCGCTTTTCCCACAAACGCT
* *
102938939 GCTATAGAATG-TGTCCTTTAGCAGCGCTTTTCCCACAAACGCT
1 GCTATAGAACGTTG-CCTTTAGCGGCGCTTTTCCCACAAACGCT
* * *
102938982 GCTATAGAACGTTGCCTTTAGCGGTGCTTTTCCCACACATG-T
1 GCTATAGAACGTTGCCTTTAGCGGCGCTTTTCCCACAAACGCT
* * * * * *
102939024 CGCTATAAAAAGTGGCCTTTAGCGACGCTTTTCCCGCAAATGCT
1 -GCTATAGAACGTTGCCTTTAGCGGCGCTTTTCCCACAAACGCT
*
102939068 GTTATAGA
1 GCTATAGA
102939076 GCTTGATTTT
Statistics
Matches: 203, Mismatches: 51, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
40 1 0.00
41 26 0.13
42 5 0.02
43 166 0.82
44 5 0.02
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (43 bp):
GCTATAGAACGTTGCCTTTAGCGGCGCTTTTCCCACAAACGCT
Found at i:102945506 original size:43 final size:43
Alignment explanation
Indices: 102945283--102945719 Score: 336
Period size: 43 Copynumber: 10.1 Consensus size: 43
102945273 AAAATTAGTA
* ** * *
102945283 GCGTTTTTTGCGAAAAGTGCCGCTAAAAACCAAGTTCTATAGTG
1 GCGTTTGTTG-GAAAAGTGCCGCTAAAGGCCACGTTCTATAGCG
*** *
102945327 GCGTTTACGGGAAAAGTGCTGCTAAAGGCCACGTTCTATAGCG
1 GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCACGTTCTATAGCG
* * *
102945370 GCGTTTGTAGGAAAAGCGCAGCTAAAGGCCACGTTCTATAGCG
1 GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCACGTTCTATAGCG
* * * *
102945413 GCGTTTGTTGGAAAAGCGCTGTTAAAGGCCATGTTCTATAGCG
1 GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCACGTTCTATAGCG
* * * *
102945456 GCATTTGTTGTAAAAGTGCCGCTACAGGCCACGTTCTATAGTG
1 GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCACGTTCTATAGCG
* * * *** * * * *
102945499 TCGTTTGTAGGCAAAGCATCGCTAAATGTCACGTTTTACAGCG
1 GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCACGTTCTATAGCG
* * ** * *
102945542 TCGTTTGTTGGAAAAGTGCCACTAAAGGTAATGTTCTGTAGCG
1 GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCACGTTCTATAGCG
** *** * * *
102945585 GCGTTTGAGGGAAAAACACCGTTAAAGGTCACGTTCTATATCG
1 GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCACGTTCTATAGCG
* * * * * *
102945628 GCATTTGTTGTAAAAGCG-CGACTAAAGGTCACATTCTATAGTG
1 GCGTTTGTTGGAAAAGTGCCG-CTAAAGGCCACGTTCTATAGCG
* * * * * * *
102945671 GTGTTTGTAGAAAAAATGCCGCTAAAAGTCATGTTCTATAGCG
1 GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCACGTTCTATAGCG
102945714 GCGTTT
1 GCGTTT
102945720 TTTTCAAATA
Statistics
Matches: 307, Mismatches: 84, Indels: 5
0.78 0.21 0.01
Matches are distributed among these distances:
42 2 0.01
43 296 0.96
44 9 0.03
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCACGTTCTATAGCG
Found at i:102945568 original size:129 final size:129
Alignment explanation
Indices: 102945283--102945719 Score: 401
Period size: 129 Copynumber: 3.4 Consensus size: 129
102945273 AAAATTAGTA
* ** * * * *
102945283 GCGTTTTTTGCGAAAAGTGCCGCTAAAAACCAAGTTCTATAGTGGCGTTTACGGGAAAAGTGCTG
1 GCGTTTGTTG-GAAAAGTGCCGCTAAAGGCCATGTTCTATAGCGGCGTTTGCGGGAAAAGTGCCG
*
102945348 CTAAAGGCCACGTTCTATAGCGGCGTTTGTAGGAAAAGCGCAGCTAAAGGCCACGTTCTATAGCG
65 CTAAAGGCCACGTTCTATAGCGGCGTTTGTAGGAAAAGCGCAGCTAAAGGCCACGTTCTACAGCG
* * * * ** *
102945413 GCGTTTGTTGGAAAAGCGCTGTTAAAGGCCATGTTCTATAGCGGCATTTGTTGTAAAAGTGCCGC
1 GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCATGTTCTATAGCGGCGTTTGCGGGAAAAGTGCCGC
* * * * * * * *
102945478 TACAGGCCACGTTCTATAGTGTCGTTTGTAGGCAAAGCATC-GCTAAATGTCACGTTTTACAGCG
66 TAAAGGCCACGTTCTATAGCGGCGTTTGTAGGAAAAGC-GCAGCTAAAGGCCACGTTCTACAGCG
* * ** * * *** *
102945542 TCGTTTGTTGGAAAAGTGCCACTAAAGGTAATGTTCTGTAGCGGCGTTTGAGGGAAAAACACCGT
1 GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCATGTTCTATAGCGGCGTTTGCGGGAAAAGTGCCGC
* * * * * * * * *
102945607 TAAAGGTCACGTTCTATATCGGCATTTGTTGTAAAAGCGC-GACTAAAGGTCACATTCTATAGTG
66 TAAAGGCCACGTTCTATAGCGGCGTTTGTAGGAAAAGCGCAG-CTAAAGGCCACGTTCTACAGCG
* * * * * *
102945671 GTGTTTGTAGAAAAAATGCCGCTAAAAGTCATGTTCTATAGCGGCGTTT
1 GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCATGTTCTATAGCGGCGTTT
102945720 TTTTCAAATA
Statistics
Matches: 242, Mismatches: 63, Indels: 5
0.78 0.20 0.02
Matches are distributed among these distances:
128 2 0.01
129 230 0.95
130 10 0.04
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (129 bp):
GCGTTTGTTGGAAAAGTGCCGCTAAAGGCCATGTTCTATAGCGGCGTTTGCGGGAAAAGTGCCGC
TAAAGGCCACGTTCTATAGCGGCGTTTGTAGGAAAAGCGCAGCTAAAGGCCACGTTCTACAGCG
Found at i:102946632 original size:228 final size:228
Alignment explanation
Indices: 102946232--102946919 Score: 1223
Period size: 228 Copynumber: 3.0 Consensus size: 228
102946222 AGACTTTACT
** * *
102946232 AGAGCTCCAAATCTTGAAGTTTTGATTTTAAAAGGGTGTACCAGATTAAAAGATGTTCATCCATC
1 AGAGCTCCAAATCTTGAAGTTTTGATTTTGGAAGGATGTACCAGATTAATAGATGTTCATCCATC
*
102946297 CATAGGAGTTCTTACGAGGCTTAAACTTTTGAACTTAAGAGGCTGCAAAAATCTTAGGAGTCTTC
66 CATAGGAGTTCTTACGAGGCTTAAACTTTTGAACTTAGGAGGCTGCAAAAATCTTAGGAGTCTTC
102946362 CAACCAAAATTGAATGGGAATCTCTTGAAACATTAAATCTGAAAGATTGCAAAAACCTTGTGAGC
131 CAACCAAAATTGAATGGGAATCTCTTGAAACATTAAATCTGAAAGATTGCAAAAACCTTGTGAGC
102946427 CTCGCAAGCAGCAAAGGTGGGTGTAAAGGTTTA
196 CTCGCAAGCAGCAAAGGTGGGTGTAAAGGTTTA
* * *
102946460 AGGGCTCCAAATCTTGAAGTTTTGTTTTTGGAAGGATGTACCAAATTAATAGATGTTCATCCATC
1 AGAGCTCCAAATCTTGAAGTTTTGATTTTGGAAGGATGTACCAGATTAATAGATGTTCATCCATC
*
102946525 CATAGGAGTTCTTACGAGACTTAAACTTTTGAACTTAGGAGGCTGCAAAAATCTTAGGAGTCTTC
66 CATAGGAGTTCTTACGAGGCTTAAACTTTTGAACTTAGGAGGCTGCAAAAATCTTAGGAGTCTTC
* *
102946590 CAACCAAAATTGAATGGGAATCTCTTGAAACATTAAATCTGAAAGATTTCAAAAACCTTGTGAGT
131 CAACCAAAATTGAATGGGAATCTCTTGAAACATTAAATCTGAAAGATTGCAAAAACCTTGTGAGC
102946655 CTCGCAAGCAGCAAAGGTGGGTGTAAAGGTTTA
196 CTCGCAAGCAGCAAAGGTGGGTGTAAAGGTTTA
102946688 AGAGCTCCAAATCTTGAAGTTTTGATTTTGGAAGGATGTACCAGATTAATAGATGTTCATCCATC
1 AGAGCTCCAAATCTTGAAGTTTTGATTTTGGAAGGATGTACCAGATTAATAGATGTTCATCCATC
*
102946753 CATAGGAGTTCTTACGAGGCTTAAACTTTTGAACTTAGGAGGCTGCTAAAATCTTAGGAGTCTTC
66 CATAGGAGTTCTTACGAGGCTTAAACTTTTGAACTTAGGAGGCTGCAAAAATCTTAGGAGTCTTC
* *
102946818 CAACCAAAATTGAATGGGAATCTCTTGAAATATTAAATCTGAAAGATTGCAATAACCTTGTGAGC
131 CAACCAAAATTGAATGGGAATCTCTTGAAACATTAAATCTGAAAGATTGCAAAAACCTTGTGAGC
* * *
102946883 CTCCCAAGCAGCATAGGTGGGTCTAAAGGTTTA
196 CTCGCAAGCAGCAAAGGTGGGTGTAAAGGTTTA
102946916 AGAG
1 AGAG
102946920 TTCTTAATCT
Statistics
Matches: 437, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
228 437 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29
Consensus pattern (228 bp):
AGAGCTCCAAATCTTGAAGTTTTGATTTTGGAAGGATGTACCAGATTAATAGATGTTCATCCATC
CATAGGAGTTCTTACGAGGCTTAAACTTTTGAACTTAGGAGGCTGCAAAAATCTTAGGAGTCTTC
CAACCAAAATTGAATGGGAATCTCTTGAAACATTAAATCTGAAAGATTGCAAAAACCTTGTGAGC
CTCGCAAGCAGCAAAGGTGGGTGTAAAGGTTTA
Found at i:102949936 original size:22 final size:22
Alignment explanation
Indices: 102949892--102949943 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 22
102949882 ATGATTACTA
102949892 TTTATTTGATTTATGTTTGGAT
1 TTTATTTGATTTATGTTTGGAT
*
102949914 TATATATTTGGTTT-TG-TTGGAT
1 T-T-TATTTGATTTATGTTTGGAT
102949936 TTTATTTG
1 TTTATTTG
102949944 CATTGCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 6 0.22
21 1 0.04
22 8 0.30
23 3 0.11
24 9 0.33
ACGTcount: A:0.17, C:0.00, G:0.19, T:0.63
Consensus pattern (22 bp):
TTTATTTGATTTATGTTTGGAT
Found at i:102951040 original size:86 final size:86
Alignment explanation
Indices: 102950894--102951063 Score: 232
Period size: 86 Copynumber: 2.0 Consensus size: 86
102950884 AACAAAACGC
* * * ** * * *
102950894 CGCTAAAGATCATGTTCTTTAGTAGTGTTTGTAGGCGAAGCGTCGCTAAATACCATGTTCTATAG
1 CGCTAAAGATCATGTTCTATAGCAGCGTTTGTAGGAAAAGCGCCGCTAAAGACCACGTTCTATAG
* *
102950959 CGGCGTTTGTTGGAGAAGCAT
66 CGGCGTTTGTAGGAAAAGCAT
*
102950980 CGCTAAAGATCATGTTCTATAGCAGCGTTTGTAGGAAAAGCGCCGCTAAAGATCACGTTCTATAG
1 CGCTAAAGATCATGTTCTATAGCAGCGTTTGTAGGAAAAGCGCCGCTAAAGACCACGTTCTATAG
*
102951045 TGGCGTTTGTAGGAAAAGC
66 CGGCGTTTGTAGGAAAAGC
102951064 GCCACTAACA
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
86 72 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.29
Consensus pattern (86 bp):
CGCTAAAGATCATGTTCTATAGCAGCGTTTGTAGGAAAAGCGCCGCTAAAGACCACGTTCTATAG
CGGCGTTTGTAGGAAAAGCAT
Found at i:102951065 original size:43 final size:43
Alignment explanation
Indices: 102950887--102951071 Score: 210
Period size: 43 Copynumber: 4.3 Consensus size: 43
102950877 ATTAAAGAAC
* * *
102950887 AAAA-CGCCGCTAAAGATCATGTTCTTTAGTAGTGTTTGTAGG
1 AAAAGCGCCGCTAAAGATCATGTTCTATAGCAGCGTTTGTAGG
** * * * * *
102950929 CGAAGCGTCGCTAAATACCATGTTCTATAGCGGCGTTTGTTGG
1 AAAAGCGCCGCTAAAGATCATGTTCTATAGCAGCGTTTGTAGG
* **
102950972 AGAAGCATCGCTAAAGATCATGTTCTATAGCAGCGTTTGTAGG
1 AAAAGCGCCGCTAAAGATCATGTTCTATAGCAGCGTTTGTAGG
* **
102951015 AAAAGCGCCGCTAAAGATCACGTTCTATAGTGGCGTTTGTAGG
1 AAAAGCGCCGCTAAAGATCATGTTCTATAGCAGCGTTTGTAGG
*
102951058 AAAAGCGCCACTAA
1 AAAAGCGCCGCTAA
102951072 CATTAACAGA
Statistics
Matches: 119, Mismatches: 23, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 2 0.02
43 117 0.98
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGATCATGTTCTATAGCAGCGTTTGTAGG
Found at i:102951430 original size:66 final size:66
Alignment explanation
Indices: 102951341--102951474 Score: 162
Period size: 66 Copynumber: 2.0 Consensus size: 66
102951331 ATCTTGCAAC
* * * * * *
102951341 TGTAGTTGGAGTTCGTCAGATTTTCTTATTA-TCTCTGCTTCCCTCGTTGTTGCCTCCACTTTAA
1 TGTAGCTGGAGTTCATCAGATTTTCTT-TGAGCCTCTGCTTCCCTCGATGCTGCCTCCACTTTAA
102951405 GT
65 GT
* * * *
102951407 TGTAGCTGGAGTTCATCATATTTTCTTTGAGCCTCTGTTTCTCTTGATGCTGCCTCCACTTTAAG
1 TGTAGCTGGAGTTCATCAGATTTTCTTTGAGCCTCTGCTTCCCTCGATGCTGCCTCCACTTTAAG
102951472 T
66 T
102951473 TG
1 TG
102951475 AGCAATTTGC
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
65 2 0.04
66 55 0.96
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.45
Consensus pattern (66 bp):
TGTAGCTGGAGTTCATCAGATTTTCTTTGAGCCTCTGCTTCCCTCGATGCTGCCTCCACTTTAAG
T
Found at i:102954420 original size:3 final size:3
Alignment explanation
Indices: 102954400--102954498 Score: 85
Period size: 3 Copynumber: 33.0 Consensus size: 3
102954390 TATTTACCAC
* * * *
102954400 TAT TAA TAT TAC TAT TAT TAT TAT TAT T-T TAT TTT CTAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
* * * * *
102954445 TAT TAT CAT TAT TAT TAT TAG TAT T-T TAC TAT TAT TAG TAT TAG TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102954492 TAAT TAT
1 T-AT TAT
102954499 CCCTTAATAT
Statistics
Matches: 74, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
2 4 0.05
3 66 0.89
4 4 0.05
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:102954425 original size:39 final size:38
Alignment explanation
Indices: 102954382--102954498 Score: 128
Period size: 39 Copynumber: 3.0 Consensus size: 38
102954372 TTTCGTATTC
*
102954382 TATTATTATATTTACCACTATTAATATTACTATTATTAT
1 TATTATTATATTTACTACTATTAATATTA-TATTATTAT
* * *
102954421 TATTATTTTATTTTCTACTATTATTATTATCATTATTAT
1 TATTATTATATTTACTACTATTAATATTAT-ATTATTAT
* * *
102954460 TATTAGTAT-TTTACTATTATTAGTATTAGTATTAATTAT
1 TATTATTATATTTACTACTATTAATATTA-TATT-ATTAT
102954499 CCCTTAATAT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
38 20 0.30
39 46 0.70
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (38 bp):
TATTATTATATTTACTACTATTAATATTATATTATTAT
Found at i:102962695 original size:21 final size:21
Alignment explanation
Indices: 102962649--102962706 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
102962639 TAATATTAAA
102962649 ATAA-AATAAAATAATAAGTG
1 ATAATAATAAAATAATAAGTG
*
102962669 ATAATAATGAAAATAATAGGT-
1 ATAATAAT-AAAATAATAAGTG
*
102962690 ATAATAAATAATATAAT
1 ATAAT-AATAAAATAAT
102962707 GATATATGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
20 4 0.12
21 15 0.45
22 14 0.42
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (21 bp):
ATAATAATAAAATAATAAGTG
Found at i:102962878 original size:27 final size:25
Alignment explanation
Indices: 102962814--102962879 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 25
102962804 ATAATAATAA
* * *
102962814 TATATATGATACGGTATTAAAAATG
1 TATATATAATATGATATTAAAAATG
102962839 TATATACATAATATGATATATAAAGAATG
1 TATAT--ATAATATGATAT-TAAA-AATG
102962868 TATATATAATAT
1 TATATATAATAT
102962880 ATAAAAGTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 5 0.15
27 16 0.47
28 4 0.12
29 9 0.26
ACGTcount: A:0.48, C:0.03, G:0.11, T:0.38
Consensus pattern (25 bp):
TATATATAATATGATATTAAAAATG
Found at i:102964254 original size:23 final size:23
Alignment explanation
Indices: 102964227--102964285 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
102964217 CATTGGGTCT
*
102964227 TGGGTTTAAGGGTTTAATTGTAG
1 TGGGTTTAGGGGTTTAATTGTAG
102964250 TGGGTTTAGGGGTTTAATTGTAG
1 TGGGTTTAGGGGTTTAATTGTAG
102964273 TGGGTTTAGGGGT
1 TGGGTTTAGGGGT
102964286 ATTTGGGTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.17, C:0.00, G:0.41, T:0.42
Consensus pattern (23 bp):
TGGGTTTAGGGGTTTAATTGTAG
Found at i:102965439 original size:35 final size:35
Alignment explanation
Indices: 102965388--102965455 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
102965378 TTTTTATTTT
102965388 CTTTAAATGTTCATGTAAGTTATGATAATCATTAA
1 CTTTAAATGTTCATGTAAGTTATGATAATCATTAA
* *
102965423 CTTTAAATGTTTATGTAAGTTATGGTAATCATT
1 CTTTAAATGTTCATGTAAGTTATGATAATCATT
102965456 TTTTTATCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.46
Consensus pattern (35 bp):
CTTTAAATGTTCATGTAAGTTATGATAATCATTAA
Found at i:102966475 original size:59 final size:59
Alignment explanation
Indices: 102965582--102966468 Score: 1370
Period size: 59 Copynumber: 15.1 Consensus size: 59
102965572 TAAATGAATG
* * *
102965582 ATTAATCGAAAATTAATTAATTATTCATAAAATTATTATGACATATGATTCTTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
* * ** *
102965641 ATTAACCGAAAATTAATTAATTATTCATTGAATTATTATGAAATATGATTATTTAATTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
* * * *
102965700 ATTAATCAAAAATTAATTAATTATTTATAAAATTATTATGACATGTGATTCTTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
102965759 ATTAATCAAAAATTAATTAATTATTCATAGAAA-TATTATGAAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATA-AAATTATTATGAAATATGATTATTTATTTA
* *
102965818 TTTAATCAAAAATTAATTAATTATTCATAGAATTATTATGAAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
* *
102965877 ATTAACCAAAAATTAATTAATTATTCATAGAATTATTATGAAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
* *
102965936 ATTAACCAAAAATTAATTAATTATTCATAGAATTATTATGAAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
* *
102965995 ATTAAT-AAAAATTAATTAATTATTCATAGAATTATTATGAAATCTGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
* *
102966053 ATTAATCAGAAATTAATTAATTATTC-TAAAATTATTATGAAATATGATTATTTTTTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
*
102966111 ATTAATCAAAAATTAA-TAATTATTCCTAAAATTATTATGAAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
*
102966169 ATTAATCAGAAATTAATTAATTATTC-TAAAATTATTATGAAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
** * *
102966227 ATTAATCAAATTTTTATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTT
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
** * * * *
102966286 ATTAATCGGAAGTTAATTAATTATTCGTAAATTTATTATGGAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
* * *
102966345 ATTAATCAAAATTTTATTAATTATTCATAAAATTATTATAAAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
* * *
102966404 ATTAATCGAAAATTTATTAATTATTCATAGAATTATTATGAAATATGATTATTTATTTA
1 ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
102966463 ATTAAT
1 ATTAAT
102966469 TGAAAATCAA
Statistics
Matches: 764, Mismatches: 58, Indels: 12
0.92 0.07 0.01
Matches are distributed among these distances:
57 9 0.01
58 203 0.27
59 549 0.72
60 3 0.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (59 bp):
ATTAATCAAAAATTAATTAATTATTCATAAAATTATTATGAAATATGATTATTTATTTA
Found at i:102968593 original size:25 final size:25
Alignment explanation
Indices: 102968547--102968599 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
102968537 ACAATGTAAT
* *
102968547 AGAGGACGGTCGACAGCGATGCGGC
1 AGAGGACGGTCGACAGCAATGCAGC
* * *
102968572 AGAGGACTGTCGACGGTAATGCAGC
1 AGAGGACGGTCGACAGCAATGCAGC
102968597 AGA
1 AGA
102968600 CATTCGGGGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.40, T:0.11
Consensus pattern (25 bp):
AGAGGACGGTCGACAGCAATGCAGC
Found at i:102968672 original size:19 final size:21
Alignment explanation
Indices: 102968634--102968685 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 21
102968624 TGGGGAATTT
*
102968634 GATTTGGGGAAAAAACTAAGG
1 GATTTCGGGAAAAAACTAAGG
102968655 GATTT-GGGAAAAAA-TAAGG
1 GATTTCGGGAAAAAACTAAGG
102968674 GATTTCGGGAAA
1 GATTTCGGGAAA
102968686 CTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.33
20 15 0.50
21 5 0.17
ACGTcount: A:0.42, C:0.04, G:0.33, T:0.21
Consensus pattern (21 bp):
GATTTCGGGAAAAAACTAAGG
Found at i:102968871 original size:40 final size:39
Alignment explanation
Indices: 102968759--102968861 Score: 161
Period size: 39 Copynumber: 2.6 Consensus size: 39
102968749 TTTTTCTCAT
102968759 AAACGCCGCTATTGCTTTACCTTTAGCAGCGTTTATAAA
1 AAACGCCGCTATTGCTTTACCTTTAGCAGCGTTTATAAA
** * *
102968798 AAATACCGCCATTGTTTTACCTTTAGCAGCGTTTATGAAA
1 AAACGCCGCTATTGCTTTACCTTTAGCAGCGTTTAT-AAA
102968838 AAACGCCGCTATTGCTTTACCTTT
1 AAACGCCGCTATTGCTTTACCTTT
102968862 TGTGGCGTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 32 0.58
40 23 0.42
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (39 bp):
AAACGCCGCTATTGCTTTACCTTTAGCAGCGTTTATAAA
Found at i:102971728 original size:21 final size:21
Alignment explanation
Indices: 102971702--102971742 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
102971692 ATCTGCTCAA
* *
102971702 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
102971723 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
102971743 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:102986352 original size:16 final size:16
Alignment explanation
Indices: 102986331--102986363 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
102986321 ACTTGGAATG
*
102986331 CCTATATGCATTTTAT
1 CCTATATGCATTCTAT
102986347 CCTATATGCATTCTAT
1 CCTATATGCATTCTAT
102986363 C
1 C
102986364 TGGTGAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.06, T:0.45
Consensus pattern (16 bp):
CCTATATGCATTCTAT
Found at i:102995009 original size:7 final size:7
Alignment explanation
Indices: 102994997--102995021 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
102994987 TTTCATTTTG
102994997 TTAGGGT
1 TTAGGGT
102995004 TTAGGGT
1 TTAGGGT
102995011 TTAGGGT
1 TTAGGGT
102995018 TTAG
1 TTAG
102995022 AAGTGGAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.40, T:0.44
Consensus pattern (7 bp):
TTAGGGT
Found at i:102995786 original size:23 final size:22
Alignment explanation
Indices: 102995740--102995796 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
102995730 GTTCAAACAC
*
102995740 TTTACTTTCGTTTTTGCTTCTGT
1 TTTACTTT-GTTCTTGCTTCTGT
* *
102995763 TTTCATTTTGTTCTTGCTTTTGT
1 TTT-ACTTTGTTCTTGCTTCTGT
102995786 TTTACTTTGTT
1 TTTACTTTGTT
102995797 TTTACTGCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 7 0.24
23 18 0.62
24 4 0.14
ACGTcount: A:0.05, C:0.14, G:0.12, T:0.68
Consensus pattern (22 bp):
TTTACTTTGTTCTTGCTTCTGT
Found at i:103000226 original size:11 final size:11
Alignment explanation
Indices: 103000176--103000234 Score: 59
Period size: 12 Copynumber: 5.3 Consensus size: 11
103000166 GTTCAAACAG
*
103000176 TTTGCTTTCGTT
1 TTTGCTTTTG-T
*
103000188 TTTGCTTCTGT
1 TTTGCTTTTGT
103000199 TTT-CATTTTGT
1 TTTGC-TTTTGT
103000210 TCTTGCTTTTGT
1 T-TTGCTTTTGT
103000222 TTTGC-TTTGT
1 TTTGCTTTTGT
103000232 TTT
1 TTT
103000235 TGCTGCCAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
10 9 0.22
11 14 0.34
12 17 0.41
13 1 0.02
ACGTcount: A:0.02, C:0.14, G:0.15, T:0.69
Consensus pattern (11 bp):
TTTGCTTTTGT
Found at i:103000235 original size:11 final size:11
Alignment explanation
Indices: 103000176--103000238 Score: 56
Period size: 11 Copynumber: 5.5 Consensus size: 11
103000166 GTTCAAACAG
103000176 TTTGCTTTCGTT
1 TTTGCTTT-GTT
103000188 TTTGCTTCTGTT
1 TTTGCTT-TGTT
***
103000200 TTCATTTTGTT
1 TTTGCTTTGTT
*
103000211 CTTGCTTT-TGT
1 TTTGCTTTGT-T
103000222 TTTGCTTTGTT
1 TTTGCTTTGTT
103000233 TTTGCT
1 TTTGCT
103000239 GCCAAAACCC
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
10 1 0.03
11 23 0.57
12 15 0.38
13 1 0.03
ACGTcount: A:0.02, C:0.14, G:0.16, T:0.68
Consensus pattern (11 bp):
TTTGCTTTGTT
Found at i:103001080 original size:41 final size:41
Alignment explanation
Indices: 103001012--103001093 Score: 96
Period size: 41 Copynumber: 2.0 Consensus size: 41
103001002 ACTTTTTTAA
* *
103001012 ATTAAATATTTTAGTCAATCTACTGTTA-TTTGTCATTAGAT
1 ATTAAATATCTTAGTCAATCTACTGTTAGTTT-CCATTAGAT
**
103001053 ATTAAATATCTTAGTCCCTCT-CTTGTTAGTTTCCATTAGAT
1 ATTAAATATCTTAGTCAATCTAC-TGTTAGTTTCCATTAGAT
103001094 GAGTGCCTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
40 1 0.03
41 31 0.89
42 3 0.09
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.48
Consensus pattern (41 bp):
ATTAAATATCTTAGTCAATCTACTGTTAGTTTCCATTAGAT
Found at i:103003630 original size:17 final size:18
Alignment explanation
Indices: 103003569--103003660 Score: 99
Period size: 17 Copynumber: 5.3 Consensus size: 18
103003559 GATTACAAAA
103003569 TCATAT-AT-TCTAAGAT
1 TCATATCATATCTAAGAT
*
103003585 TGCATATCATATCTAATAT
1 T-CATATCATATCTAAGAT
103003604 TGCA-ATCATATCTAAGAT
1 T-CATATCATATCTAAGAT
103003622 T-ATATCATATCTAAGAT
1 TCATATCATATCTAAGAT
103003639 TGCATATCAT-T-TAAGAT
1 T-CATATCATATCTAAGAT
103003656 T-ATAT
1 TCATAT
103003661 TTACATATGA
Statistics
Matches: 68, Mismatches: 2, Indels: 13
0.82 0.02 0.16
Matches are distributed among these distances:
15 4 0.06
16 2 0.03
17 27 0.40
18 17 0.25
19 18 0.26
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.41
Consensus pattern (18 bp):
TCATATCATATCTAAGAT
Found at i:103003631 original size:35 final size:35
Alignment explanation
Indices: 103003570--103003660 Score: 125
Period size: 35 Copynumber: 2.6 Consensus size: 35
103003560 ATTACAAAAT
*
103003570 CATAT-ATTCTAAGATTGCATATCATATCTAATATTG
1 CATATCATTCTAAGATT--ATATCATATCTAAGATTG
103003606 CA-ATCATATCTAAGATTATATCATATCTAAGATTG
1 CATATCAT-TCTAAGATTATATCATATCTAAGATTG
103003641 CATATCATT-TAAGATTATAT
1 CATATCATTCTAAGATTATAT
103003661 TTACATATGA
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
34 11 0.22
35 22 0.43
36 9 0.18
37 9 0.18
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.41
Consensus pattern (35 bp):
CATATCATTCTAAGATTATATCATATCTAAGATTG
Found at i:103004055 original size:45 final size:45
Alignment explanation
Indices: 103004000--103004229 Score: 221
Period size: 45 Copynumber: 5.1 Consensus size: 45
103003990 GGAACGTGAT
* * * *
103004000 ATCTGCTATCTTTGATCTGCTCCTCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
103004045 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGTCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
103004090 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAAATACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * ** *
103004135 ATCTGTCATCTTGGATCTGCT-TCGGTGTAA-ACACATGAAGGTTAG
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGA-G-ATGCCAA
* *
103004180 ATCTGCTATGTCTTCGACCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
103004227 ATC
1 ATC
103004230 ATCTTGGATC
Statistics
Matches: 143, Mismatches: 36, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
43 4 0.03
44 6 0.04
45 104 0.73
46 1 0.01
47 17 0.12
48 7 0.05
49 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:103004298 original size:78 final size:78
Alignment explanation
Indices: 103004169--103004385 Score: 328
Period size: 78 Copynumber: 2.8 Consensus size: 78
103004159 GTGTAAACAC
* *
103004169 ATGAAGGTTAGATCTGCTATGTCTTCGACCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
103004234 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
103004247 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
103004311 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * * **
103004325 ATGAAGGTCAGATCTGCTATATCTTTGATCTGCTCTCTGTCAAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
103004386 TGTTTCTTCG
Statistics
Matches: 126, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
77 2 0.02
78 123 0.98
79 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:103008548 original size:46 final size:46
Alignment explanation
Indices: 103008495--103008653 Score: 171
Period size: 46 Copynumber: 3.4 Consensus size: 46
103008485 ACCCGAGCTT
* * *
103008495 GTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTTCGAACTC
1 GTTGAGTTAAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTC
* * * * * *
103008541 GTTGAGTTAAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCAAGCTC
1 GTTGAGTTAAGTCCGAGTTCACTTATGGATGCAA--ATG-TTCGAA-CTC
*
103008588 GTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTC
1 GTTGAGTTAAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTC
103008634 GTTGAGTTAAGTCCGAGTTC
1 GTTGAGTTAAGTCCGAGTTC
103008654 GTGAGATGTA
Statistics
Matches: 89, Mismatches: 17, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
43 5 0.06
45 4 0.04
46 44 0.49
47 26 0.29
48 4 0.04
50 6 0.07
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (46 bp):
GTTGAGTTAAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTC
Found at i:103008594 original size:47 final size:47
Alignment explanation
Indices: 103008538--103008747 Score: 293
Period size: 47 Copynumber: 4.5 Consensus size: 47
103008528 AATGTTCGAA
*
103008538 CTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAG
* * * * * *
103008585 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG-TTCGAA-
1 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCAAG
*
103008631 CTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAG
103008678 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAG
103008725 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
103008748 ACTTATGGGC
Statistics
Matches: 141, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
43 6 0.04
45 4 0.03
46 26 0.18
47 95 0.67
48 4 0.03
50 6 0.04
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCAAG
Found at i:103008654 original size:93 final size:93
Alignment explanation
Indices: 103008490--103008700 Score: 395
Period size: 93 Copynumber: 2.3 Consensus size: 93
103008480 TGGGCACCCG
* * *
103008490 AGCTTGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGTTAAGTCC
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTCGTTGAGTTAAGTCC
103008555 GAGTTCGTGAGATGTAACTAGGCATCCA
66 GAGTTCGTGAGATGTAACTAGGCATCCA
103008583 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTCGTTGAGTTAAGTCC
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTCGTTGAGTTAAGTCC
103008648 GAGTTCGTGAGATGTAACTAGGCATCCA
66 GAGTTCGTGAGATGTAACTAGGCATCCA
103008676 AGCTCGTTGAGTTGAGTCCGAGTTC
1 AGCTCGTTGAGTTGAGTCCGAGTTC
103008701 GTGAGATGTA
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 115 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (93 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTCGTTGAGTTAAGTCC
GAGTTCGTGAGATGTAACTAGGCATCCA
Found at i:103014879 original size:22 final size:21
Alignment explanation
Indices: 103014844--103014955 Score: 71
Period size: 19 Copynumber: 5.7 Consensus size: 21
103014834 AAAAGGTATC
* *
103014844 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
103014865 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
103014888 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
103014907 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
103014925 T--ATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
103014942 TGCATATCATATCT
1 TACAAATCATATCT
103014956 AAGATTGCAT
Statistics
Matches: 78, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
17 15 0.19
18 15 0.19
19 19 0.24
21 4 0.05
22 15 0.19
23 10 0.13
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:103014887 original size:23 final size:22
Alignment explanation
Indices: 103014844--103014901 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
103014834 AAAAGGTATC
* *
103014844 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
103014865 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
103014888 TGCATATCATATCT
1 TACAAATCATATCT
103014902 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:103014904 original size:19 final size:19
Alignment explanation
Indices: 103014880--103014970 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
103014870 AATCATATCT
103014880 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
103014899 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
103014917 TCTAAGATT--ATATCATA
1 TCTAAGATTGCATATCATA
103014934 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
103014953 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
103014971 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
16 1 0.01
17 15 0.22
18 15 0.22
19 38 0.55
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:103014948 original size:54 final size:53
Alignment explanation
Indices: 103014880--103014982 Score: 172
Period size: 54 Copynumber: 1.9 Consensus size: 53
103014870 AATCATATCT
*
103014880 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCATATCTAAGATTATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATCAT-T-GAAGATTATATCATA
103014934 TCTAAGATTGCATATCATATCTAAGATTGCATATCATTGAAGATTATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATATCATTGAAGATTATAT
103014983 TTCCATATGA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
53 10 0.21
54 32 0.68
55 5 0.11
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.38
Consensus pattern (53 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATCATTGAAGATTATATCATA
Found at i:103015766 original size:8 final size:8
Alignment explanation
Indices: 103015753--103015795 Score: 86
Period size: 8 Copynumber: 5.4 Consensus size: 8
103015743 TTCAACCTCA
103015753 ACATTTAC
1 ACATTTAC
103015761 ACATTTAC
1 ACATTTAC
103015769 ACATTTAC
1 ACATTTAC
103015777 ACATTTAC
1 ACATTTAC
103015785 ACATTTAC
1 ACATTTAC
103015793 ACA
1 ACA
103015796 AATTGTGCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.35
Consensus pattern (8 bp):
ACATTTAC
Found at i:103023621 original size:17 final size:17
Alignment explanation
Indices: 103023593--103023638 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
103023583 AAATAGAAGA
103023593 TATTATTTTATTTAGTTT
1 TATTA-TTTATTTAGTTT
*
103023611 TATTATTTATTTATTTT
1 TATTATTTATTTAGTTT
103023628 TATT-TTTATTT
1 TATTATTTATTT
103023639 TATTAATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 7 0.26
17 15 0.56
18 5 0.19
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (17 bp):
TATTATTTATTTAGTTT
Found at i:103026551 original size:58 final size:58
Alignment explanation
Indices: 103026481--103026596 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
103026471 AGAAAGAGAA
103026481 AGATGAAAAAGAAATCCTTGAGACATTCAGGAAGGTGGAGGTAAATATTCATTTACTC
1 AGATGAAAAAGAAATCCTTGAGACATTCAGGAAGGTGGAGGTAAATATTCATTTACTC
103026539 AGATGAAAAAGAAATCCTTGAGACATTCAGGAAGGTGGAGGTAAATATTCATTTACTC
1 AGATGAAAAAGAAATCCTTGAGACATTCAGGAAGGTGGAGGTAAATATTCATTTACTC
103026597 GACGCTATCA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (58 bp):
AGATGAAAAAGAAATCCTTGAGACATTCAGGAAGGTGGAGGTAAATATTCATTTACTC
Found at i:103033843 original size:17 final size:17
Alignment explanation
Indices: 103033815--103033860 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
103033805 AAATAGAAGA
103033815 TATTATTTTATTTAGTTT
1 TATTA-TTTATTTAGTTT
*
103033833 TATTATTTATTTATTTT
1 TATTATTTATTTAGTTT
103033850 TATT-TTTATTT
1 TATTATTTATTT
103033861 TATTAATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 7 0.26
17 15 0.56
18 5 0.19
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (17 bp):
TATTATTTATTTAGTTT
Found at i:103038974 original size:27 final size:26
Alignment explanation
Indices: 103038937--103039023 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 26
103038927 ATATATATCT
*
103038937 TTTTAAATTTTTTTAAAAATTTTGAA
1 TTTTAAATTTTTTTAAATATTTTGAA
*
103038963 TTTTAAATTTTTTATAAATATTTTAAA
1 TTTTAAATTTTTT-TAAATATTTTGAA
*
103038990 TTTTAAAAATTATTTTAAATTATTTTGTAA
1 TTTT--AAATTTTTTTAAA-TATTTTG-AA
103039020 TTTT
1 TTTT
103039024 TATTAAGAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
26 13 0.25
27 15 0.29
28 4 0.08
29 14 0.27
30 6 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (26 bp):
TTTTAAATTTTTTTAAATATTTTGAA
Found at i:103039003 original size:19 final size:18
Alignment explanation
Indices: 103038962--103039010 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
103038952 AAAATTTTGA
*
103038962 ATTTTAAATTTTTTATAAAT
1 ATTTTAAA--TTTTAAAAAT
103038982 ATTTTAAATTTTAAAAATT
1 ATTTTAAATTTTAAAAA-T
103039001 ATTTTAAATT
1 ATTTTAAATT
103039011 ATTTTGTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 8 0.30
19 11 0.41
20 8 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTTAAATTTTAAAAAT
Found at i:103049434 original size:29 final size:29
Alignment explanation
Indices: 103049392--103049450 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
103049382 AATTTATTTG
* *
103049392 CAAAATCTCATAAATTCTTAGAACATGCT
1 CAAAATCTAATAAATTCTTAAAACATGCT
103049421 CAAAATCTAATAAATTCTTAAAACATGCT
1 CAAAATCTAATAAATTCTTAAAACATGCT
103049450 C
1 C
103049451 TCCTTTAACG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (29 bp):
CAAAATCTAATAAATTCTTAAAACATGCT
Found at i:103050480 original size:16 final size:15
Alignment explanation
Indices: 103050441--103050479 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
103050431 CTTGATTTTT
103050441 TTAATTTTGTTCATA
1 TTAATTTTGTTCATA
103050456 TTAGATTTTGTTACA-A
1 TTA-ATTTTGTT-CATA
103050472 TTAATTTT
1 TTAATTTT
103050480 TATCATTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 8 0.36
16 12 0.55
17 2 0.09
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.59
Consensus pattern (15 bp):
TTAATTTTGTTCATA
Found at i:103050635 original size:44 final size:44
Alignment explanation
Indices: 103050572--103050658 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
103050562 CATGTCCCAC
*
103050572 ATAATTTATGGTTTATGGTATCAGATGAACATATCGCAAATGAT
1 ATAATTTATGGTTTATGGTATCAGATGAACATATCACAAATGAT
103050616 ATAATTTATGGTTTATGGTATCAGATGAACATATCACAAATGA
1 ATAATTTATGGTTTATGGTATCAGATGAACATATCACAAATGA
103050659 CTTAAAAAGG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (44 bp):
ATAATTTATGGTTTATGGTATCAGATGAACATATCACAAATGAT
Found at i:103053083 original size:21 final size:21
Alignment explanation
Indices: 103053059--103053099 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
103053049 TAACGGGACC
103053059 GCTGATGTGGCAAGTTAACTA
1 GCTGATGTGGCAAGTTAACTA
*
103053080 GCTGATGTGGCCAGTTAACT
1 GCTGATGTGGCAAGTTAACT
103053100 TGCGACGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (21 bp):
GCTGATGTGGCAAGTTAACTA
Found at i:103053177 original size:3 final size:3
Alignment explanation
Indices: 103053171--103053199 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
103053161 CTTAATAACA
103053171 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
103053200 ACCTAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:103053567 original size:38 final size:38
Alignment explanation
Indices: 103053516--103053591 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
103053506 AAAGTAATGA
103053516 CGTTAACTTTTTAATGTTTAATTTGAGTTTTAGAATTG
1 CGTTAACTTTTTAATGTTTAATTTGAGTTTTAGAATTG
103053554 CGTTAACTTTTTAATGTTTAATTTGAGTTTTAGAATTG
1 CGTTAACTTTTTAATGTTTAATTTGAGTTTTAGAATTG
103053592 ATTTAATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.05, G:0.16, T:0.53
Consensus pattern (38 bp):
CGTTAACTTTTTAATGTTTAATTTGAGTTTTAGAATTG
Found at i:103060900 original size:86 final size:86
Alignment explanation
Indices: 103060734--103060897 Score: 240
Period size: 85 Copynumber: 1.9 Consensus size: 86
103060724 TATATTGTTT
* *
103060734 TGATCAAGTTGCAATTATCCAAGTAAACAATTTGCTAGCTTCTCTTTTTCCCTAATTGGAGTTTA
1 TGATCAAGTTGCAATTATCCAAGTAAACAATTTGCAAGCTTCCCTTTTTCCCTAATTGGAGTTTA
*
103060799 TATTGTTTAGATTTGGATGAG
66 TATTATTTAGATTTGGATGAG
* * * * * *
103060820 TGATCTAGTTGCAATTATCCTAGTAAAGAA-TTGCAAGTTTCCCTTTTTCCCTAGTTGTAGTTTA
1 TGATCAAGTTGCAATTATCCAAGTAAACAATTTGCAAGCTTCCCTTTTTCCCTAATTGGAGTTTA
103060884 TATTATTTAGATTT
66 TATTATTTAGATTT
103060898 TGGTGATTGG
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
85 42 0.61
86 27 0.39
ACGTcount: A:0.26, C:0.14, G:0.16, T:0.44
Consensus pattern (86 bp):
TGATCAAGTTGCAATTATCCAAGTAAACAATTTGCAAGCTTCCCTTTTTCCCTAATTGGAGTTTA
TATTATTTAGATTTGGATGAG
Found at i:103061063 original size:12 final size:12
Alignment explanation
Indices: 103061046--103061070 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103061036 GATGTGGTAG
103061046 TTGCACTATACA
1 TTGCACTATACA
103061058 TTGCACTATACA
1 TTGCACTATACA
103061070 T
1 T
103061071 CTTAACGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (12 bp):
TTGCACTATACA
Found at i:103069752 original size:19 final size:18
Alignment explanation
Indices: 103069728--103069763 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
103069718 CCAAAATTTT
*
103069728 ATTTTAATATTTTTTATAC
1 ATTTTAAT-TTTGTTATAC
103069747 ATTTTAATTTTGTTATA
1 ATTTTAATTTTGTTATA
103069764 AATACTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (18 bp):
ATTTTAATTTTGTTATAC
Found at i:103070362 original size:22 final size:22
Alignment explanation
Indices: 103070337--103070397 Score: 113
Period size: 22 Copynumber: 2.8 Consensus size: 22
103070327 CCGAATCAAG
*
103070337 GCCATCAATGCACTGTCAACAC
1 GCCATCAATGCGCTGTCAACAC
103070359 GCCATCAATGCGCTGTCAACAC
1 GCCATCAATGCGCTGTCAACAC
103070381 GCCATCAATGCGCTGTC
1 GCCATCAATGCGCTGTC
103070398 TAGAAACCTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.26, C:0.36, G:0.18, T:0.20
Consensus pattern (22 bp):
GCCATCAATGCGCTGTCAACAC
Found at i:103071653 original size:3 final size:3
Alignment explanation
Indices: 103071645--103071749 Score: 80
Period size: 3 Copynumber: 35.0 Consensus size: 3
103071635 TTTTTTACTA
103071645 TAT TAT TA- TAT TAT T-T TA- TAT T-T TAT TAT ATAT T-T ATAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT -TAT TAT
*
103071687 TAT TACT TAT TATT TAT TAT GTAT TAT TTT TA- TAT ATAT TAT TAT T-T
1 TAT TA-T TAT TA-T TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT
*
103071734 ATAT TAT TAT TTT TAT
1 -TAT TAT TAT TAT TAT
103071750 ATTTAAATAT
Statistics
Matches: 84, Mismatches: 4, Indels: 28
0.72 0.03 0.24
Matches are distributed among these distances:
2 12 0.14
3 55 0.65
4 17 0.20
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:103071665 original size:10 final size:10
Alignment explanation
Indices: 103071632--103071701 Score: 51
Period size: 10 Copynumber: 6.9 Consensus size: 10
103071622 TTACATATTC
103071632 ATATT-TTTT
1 ATATTATTTT
103071641 ACTA-TATTATT
1 A-TATTATT-TT
103071652 ATATTATTTT
1 ATATTATTTT
103071662 ATATT-TTATT
1 ATATTATT-TT
103071672 ATA-TA-TTT
1 ATATTATTTT
103071680 ATATTATTATT
1 ATATTATT-TT
103071691 ACTTATTATTT
1 A--TATTATTT
103071702 ATTATGTATT
Statistics
Matches: 50, Mismatches: 0, Indels: 19
0.72 0.00 0.28
Matches are distributed among these distances:
8 5 0.10
9 8 0.16
10 19 0.38
11 10 0.20
12 1 0.02
13 7 0.14
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (10 bp):
ATATTATTTT
Found at i:103071684 original size:48 final size:48
Alignment explanation
Indices: 103071612--103071749 Score: 139
Period size: 48 Copynumber: 2.9 Consensus size: 48
103071602 TTTAATAAAA
* *
103071612 TTTATTTTTTTTACATATTCATATT-TT-TTACTATATTATTATATTAT-
1 TTTATTTTTATTATATATTCATATTATTATTACT-TATTATT-TATTATG
*
103071659 TTTATATTTTATTATATATTTATATTATTATTACTTATTATTTATTATG
1 TTTAT-TTTTATTATATATTCATATTATTATTACTTATTATTTATTATG
103071708 TATTATTTTTA-TATATATT-ATTATT-TATATTA-TTATT-TTTAT
1 T-TTATTTTTATTATATATTCA-TATTAT-TATTACTTATTATTTAT
103071750 ATTTAAATAT
Statistics
Matches: 81, Mismatches: 3, Indels: 15
0.82 0.03 0.15
Matches are distributed among these distances:
46 5 0.06
47 12 0.15
48 40 0.49
49 15 0.19
50 9 0.11
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.67
Consensus pattern (48 bp):
TTTATTTTTATTATATATTCATATTATTATTACTTATTATTTATTATG
Found at i:103071744 original size:18 final size:18
Alignment explanation
Indices: 103071643--103071749 Score: 116
Period size: 18 Copynumber: 5.9 Consensus size: 18
103071633 TATTTTTTAC
103071643 TATATTATTA-TATTATTT
1 TATATTATTATTATTA-TT
103071661 TATATT-TTATTATATATT
1 TATATTATTATTAT-TATT
103071679 TATATTATTATTACTTA-T
1 TATATTATTATTA-TTATT
103071697 TAT-TTATTATGTATTATT
1 TATATTATTAT-TATTATT
*
103071715 TTTA-TATATATTATTATT
1 TATATTAT-TATTATTATT
*
103071733 TATATTATTATTTTTAT
1 TATATTATTATTATTAT
103071750 ATTTAAATAT
Statistics
Matches: 77, Mismatches: 3, Indels: 18
0.79 0.03 0.18
Matches are distributed among these distances:
17 13 0.17
18 47 0.61
19 16 0.21
20 1 0.01
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (18 bp):
TATATTATTATTATTATT
Found at i:103084374 original size:171 final size:174
Alignment explanation
Indices: 103083950--103084386 Score: 720
Period size: 175 Copynumber: 2.5 Consensus size: 174
103083940 ATCAAAACAT
* *
103083950 ATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAATAGATACATAACAGATCTAACCTT
1 ATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAACAGATACATAGCAGATCTAACCTT
* *
103084015 CAGATGATTTTA-TAGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATC
66 CAGATGATTTCACT-GAAGCAGATCCAAGATAATTTGGCATCCTTGTGTTTACAAGGAACAAATC
103084079 GAAGACATAGCAGATTTGACTTTCGGATGTTCCCACACCAAAGCAG
130 GAAGACATAGCAGATTTGACTTTCGGATGTT-CCACACCAAAGCAG
* *
103084125 ATCCAAGATAACAGATCTGGCATCTCCATTTCGACGAAGAACAGATACATTGCAGATCTAACCTT
1 ATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAACAGATACATAGCAGATCTAACCTT
*
103084190 CAGATGATTTCACTGAAGTAGATCCAAGATAATTTGGCATCCTTGTGTTTACAAGGAACAAATCG
66 CAGATGATTTCACTGAAGCAGATCCAAGATAATTTGGCATCCTTGTGTTTACAAGGAACAAATCG
* *
103084255 AAGACATAGCAGATTTGACTTTC-G-TGTT-TACGCCAAAGCAG
131 AAGACATAGCAGATTTGACTTTCGGATGTTCCACACCAAAGCAG
* * *
103084296 ATCCAAGACAACAGATCTGGCATCTTCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTT
1 ATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAACAGATACATAGCAGATCTAACCTT
103084361 CAGATGATTTCACTGAAGCAGATCCA
66 CAGATGATTTCACTGAAGCAGATCCA
103084387 TCCTTGTGTT
Statistics
Matches: 246, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
171 96 0.39
173 4 0.02
174 1 0.00
175 144 0.59
176 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (174 bp):
ATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAACAGATACATAGCAGATCTAACCTT
CAGATGATTTCACTGAAGCAGATCCAAGATAATTTGGCATCCTTGTGTTTACAAGGAACAAATCG
AAGACATAGCAGATTTGACTTTCGGATGTTCCACACCAAAGCAG
Found at i:103084386 original size:86 final size:84
Alignment explanation
Indices: 103083950--103084386 Score: 229
Period size: 87 Copynumber: 5.1 Consensus size: 84
103083940 ATCAAAACAT
* * *
103083950 ATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAATAGATACATAACAGATCTAACCTT
1 ATCCAAGA-AACAGATCTGGCATCTTCATTTCGACGGAG-ACAGATACATAGCAGATCTAACCTT
*
103084015 CAGATGATTTTA-TAGAAGCAG
64 CAGATGATTTCACT-GAAGCAG
* * ** * * *
103084036 ATCCAAG--A-TGATTTGGCATCCTTGTGTTTAC-AAGGA-ACAAATCGAAGACATAGCAGATTT
1 ATCCAAGAAACAGATCTGGCAT-CTT-CATTT-CGACGGAGAC--A--G-ATACATAGCAGATCT
* * * * **
103084096 GACTTTCGGATG-TTCCCACACCAAAGCAG
58 AACCTTCAGATGATT---TCACTGAAGCAG
* * *
103084125 ATCCAAGATAACAGATCTGGCATCTCCATTTCGACGAAGAACAGATACATTGCAGATCTAACCTT
1 ATCCAAGA-AACAGATCTGGCATCTTCATTTCGACGGAG-ACAGATACATAGCAGATCTAACCTT
*
103084190 CAGATGATTTCACTGAAGTAG
64 CAGATGATTTCACTGAAGCAG
* * ** * * *
103084211 ATCCAAG--ATA-ATTTGGCATCCTTGTGTTTAC-AAGGA-ACAAATCGAAGACATAGCAGATTT
1 ATCCAAGAAACAGATCTGGCAT-CTT-CATTT-CGACGGAGAC--A--G-ATACATAGCAGATCT
* * * **
103084271 GACTTTC-G-TG-TTTACGCCAAAGCAG
58 AACCTTCAGATGATTT-CACTGAAGCAG
103084296 ATCCAAGACAACAGATCTGGCATCTTCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTT
1 ATCCAAGA-AACAGATCTGGCATCTTCATTTCGACGGAGA-CAGATACATAGCAGATCTAACCTT
103084361 CAGATGATTTCACTGAAGCAG
64 CAGATGATTTCACTGAAGCAG
103084382 ATCCA
1 ATCCA
103084387 TCCTTGTGTT
Statistics
Matches: 250, Mismatches: 62, Indels: 78
0.64 0.16 0.20
Matches are distributed among these distances:
82 20 0.08
83 7 0.03
84 36 0.14
85 20 0.08
86 43 0.17
87 49 0.20
88 27 0.11
89 26 0.10
90 1 0.00
91 7 0.03
92 3 0.01
93 11 0.04
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (84 bp):
ATCCAAGAAACAGATCTGGCATCTTCATTTCGACGGAGACAGATACATAGCAGATCTAACCTTCA
GATGATTTCACTGAAGCAG
Done.