Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 316 of 352
Found at i:103086307 original size:28 final size:30
Alignment explanation
Indices: 103086271--103086370 Score: 71
Period size: 30 Copynumber: 3.3 Consensus size: 30
103086261 TAAAGTTCAT
*
103086271 TTATTTATTTTTACA-TA-TTCATATTTT-
1 TTATATATTTTTACATTATTTCATATTTTA
* * *
103086298 TTACTATATTATTATATTATTTTATATTTTA
1 TTA-TATATTTTTACATTATTTCATATTTTA
* * *
103086329 TTATATATTTATATTATTATTACATATTATTTA
1 TTATATATTTTTA-CATTATTTCATA-T-TTTA
*
103086362 TTATGTATT
1 TTATATATT
103086371 ATTTTTATAT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
27 3 0.05
28 9 0.16
29 2 0.04
30 17 0.30
31 13 0.23
32 1 0.02
33 12 0.21
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (30 bp):
TTATATATTTTTACATTATTTCATATTTTA
Found at i:103086312 original size:3 final size:3
Alignment explanation
Indices: 103086304--103086408 Score: 71
Period size: 3 Copynumber: 35.0 Consensus size: 3
103086294 TTTTTTACTA
103086304 TAT TAT TA- TAT TAT T-T TA- TAT T-T TAT TAT ATAT T-T ATAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT -TAT TAT
* *
103086346 TAT TACA TAT TATT TAT TAT GTAT TAT TTT TA- TAT ATAT TAT TAT T-T
1 TAT TA-T TAT TA-T TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT
*
103086393 ATAT TAT TAT TTT TAT
1 -TAT TAT TAT TAT TAT
103086409 ATTTAAATAT
Statistics
Matches: 82, Mismatches: 6, Indels: 28
0.71 0.05 0.24
Matches are distributed among these distances:
2 12 0.15
3 54 0.66
4 16 0.20
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:103086324 original size:10 final size:10
Alignment explanation
Indices: 103086291--103086360 Score: 51
Period size: 10 Copynumber: 6.9 Consensus size: 10
103086281 TTACATATTC
103086291 ATATT-TTTT
1 ATATTATTTT
103086300 ACTA-TATTATT
1 A-TATTATT-TT
103086311 ATATTATTTT
1 ATATTATTTT
103086321 ATATT-TTATT
1 ATATTATT-TT
103086331 ATA-TA-TTT
1 ATATTATTTT
103086339 ATATTATTATT
1 ATATTATT-TT
103086350 ACATATTATTT
1 --ATATTATTT
103086361 ATTATGTATT
Statistics
Matches: 50, Mismatches: 0, Indels: 19
0.72 0.00 0.28
Matches are distributed among these distances:
8 5 0.10
9 8 0.16
10 19 0.38
11 9 0.18
12 1 0.02
13 8 0.16
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (10 bp):
ATATTATTTT
Found at i:103086343 original size:48 final size:48
Alignment explanation
Indices: 103086285--103086385 Score: 129
Period size: 48 Copynumber: 2.1 Consensus size: 48
103086275 TTATTTTTAC
103086285 ATATTCATATT-TT-TTACTATATTATTATATTAT-T-TTATATTTTATTAT
1 ATATTCATATTATTATTAC-ATATTATT-TATTATGTATTAT-TTTTA-TAT
*
103086333 ATATTTATATTATTATTACATATTATTTATTATGTATTATTTTTATAT
1 ATATTCATATTATTATTACATATTATTTATTATGTATTATTTTTATAT
103086381 ATATT
1 ATATT
103086386 ATTATTTATA
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
48 24 0.50
49 16 0.33
50 8 0.17
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (48 bp):
ATATTCATATTATTATTACATATTATTTATTATGTATTATTTTTATAT
Found at i:103086398 original size:48 final size:48
Alignment explanation
Indices: 103086274--103086411 Score: 125
Period size: 49 Copynumber: 3.0 Consensus size: 48
103086264 AGTTCATTTA
* *
103086274 TTTATTTTTACATAT-TCA-TATTT-T-TTACTATATTATTATATTAT
1 TTTATTTTTATATATATTATTATTTATATTACTATATTATTATATTAT
103086318 TTTATATTTTAT-TATA-TATTTATATTATTATTAC-ATATTATT-TATTAT
1 TTTAT-TTTTATATATATTA-TTAT-TTA-TATTACTATATTATTATATTAT
*
103086366 GTATTATTTTTATATATATTATTATTTATATTA-T-TATTTTTATATT
1 -T-TTATTTTTATATATATTATTATTTATATTACTATATTATTATATT
103086412 TAAATATTAA
Statistics
Matches: 77, Mismatches: 3, Indels: 24
0.74 0.03 0.23
Matches are distributed among these distances:
44 9 0.12
45 5 0.06
46 3 0.04
47 8 0.10
48 15 0.19
49 19 0.25
50 16 0.21
51 2 0.03
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (48 bp):
TTTATTTTTATATATATTATTATTTATATTACTATATTATTATATTAT
Found at i:103090211 original size:27 final size:27
Alignment explanation
Indices: 103090179--103090243 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
103090169 AATTTGCTTC
103090179 TATTTAA-AAAT-ATATTTATATTATTT
1 TATTTAATAAATAATATTTATA-TATTT
**
103090205 TAATTTAATATTTAATATTTATATATTT
1 T-ATTTAATAAATAATATTTATATATTT
*
103090233 TATTTATTAAA
1 TATTTAATAAA
103090244 ATTTTAGATA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
26 1 0.03
27 13 0.42
28 8 0.26
29 9 0.29
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (27 bp):
TATTTAATAAATAATATTTATATATTT
Found at i:103090230 original size:15 final size:15
Alignment explanation
Indices: 103090190--103090232 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
103090180 ATTTAAAAAT
*
103090190 ATATTTATATTATTTT
1 ATATTTATA-TATTTA
103090206 A-ATTTA-ATATTTA
1 ATATTTATATATTTA
103090219 ATATTTATATATTT
1 ATATTTATATATTT
103090233 TATTTATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 6 0.25
14 6 0.25
15 11 0.46
16 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATATTTATATATTTA
Found at i:103090239 original size:13 final size:13
Alignment explanation
Indices: 103090191--103090239 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 13
103090181 TTTAAAAATA
103090191 TATTTATATTATTT
1 TATTTATA-TATTT
103090205 TAATTTA-ATATTT
1 T-ATTTATATATTT
103090218 AATATTTATATATTT
1 --TATTTATATATTT
103090233 TATTTAT
1 TATTTAT
103090240 TAAAATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
13 12 0.39
14 7 0.23
15 12 0.39
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TATTTATATATTT
Found at i:103090349 original size:16 final size:17
Alignment explanation
Indices: 103090331--103090364 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
103090321 TATGTATTAT
*
103090331 AAATTACATAATATATAA
1 AAATAACATAATATAT-A
103090349 AAATAACATAATATAT
1 AAATAACATAATATAT
103090365 TACAAACTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (17 bp):
AAATAACATAATATATA
Found at i:103094738 original size:27 final size:27
Alignment explanation
Indices: 103094708--103094761 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
103094698 GAAATAAGAC
*
103094708 ACAAGTTTCATGATATATTAATTTTAT
1 ACAAGTTTCATGATATACTAATTTTAT
103094735 ACAAGTTTCATGATATACTAATTTTAT
1 ACAAGTTTCATGATATACTAATTTTAT
103094762 TTAATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.46
Consensus pattern (27 bp):
ACAAGTTTCATGATATACTAATTTTAT
Found at i:103096879 original size:39 final size:39
Alignment explanation
Indices: 103096825--103096904 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
103096815 ACTCGGTAAG
*
103096825 TTAGTGCACAACACTTCGTATCTCCGAGAATAAGTATTT
1 TTAGTGCACAACACTTCGTATCTCCGAGAATAAGCATTT
103096864 TTAGTGCACAACACTTCGTATCTCCGAGAATAAGCATTT
1 TTAGTGCACAACACTTCGTATCTCCGAGAATAAGCATTT
103096903 TT
1 TT
103096905 CAAAACACGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (39 bp):
TTAGTGCACAACACTTCGTATCTCCGAGAATAAGCATTT
Found at i:103098018 original size:28 final size:27
Alignment explanation
Indices: 103097985--103098041 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 27
103097975 TGTACACAAT
103097985 ATATATAATATATTA-AAAATATATATAC
1 ATATATAATAT-TTATAAAA-ATATATAC
103098013 ATATATAATATTTATAAAAATATATAC
1 ATATATAATATTTATAAAAATATATAC
103098040 AT
1 AT
103098042 GGTGTAATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 13 0.46
28 15 0.54
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (27 bp):
ATATATAATATTTATAAAAATATATAC
Found at i:103101393 original size:7 final size:7
Alignment explanation
Indices: 103101381--103101419 Score: 60
Period size: 7 Copynumber: 5.3 Consensus size: 7
103101371 GATGTGAATA
103101381 ATAAAAT
1 ATAAAAT
103101388 ATAAAAT
1 ATAAAAT
103101395 ATAAAAT
1 ATAAAAT
103101402 ATTAAAAT
1 A-TAAAAT
103101410 ATCAAAAT
1 AT-AAAAT
103101418 AT
1 AT
103101420 TAGAATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 16 0.53
8 14 0.47
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (7 bp):
ATAAAAT
Found at i:103101400 original size:14 final size:14
Alignment explanation
Indices: 103101381--103101419 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 14
103101371 GATGTGAATA
103101381 ATAAAATATAAAAT
1 ATAAAATATAAAAT
103101395 ATAAAATATTAAAAT
1 ATAAAATA-TAAAAT
103101410 ATCAAAATAT
1 AT-AAAATAT
103101420 TAGAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.35
15 9 0.39
16 6 0.26
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (14 bp):
ATAAAATATAAAAT
Found at i:103101407 original size:8 final size:8
Alignment explanation
Indices: 103101377--103101426 Score: 59
Period size: 8 Copynumber: 6.5 Consensus size: 8
103101367 TAATGATGTG
*
103101377 AATAATAA
1 AATATTAA
103101385 AATA-TAA
1 AATATTAA
103101392 AATA-TAA
1 AATATTAA
103101399 AATATTAA
1 AATATTAA
*
103101407 AATATCAA
1 AATATTAA
*
103101415 AATATTAG
1 AATATTAA
103101423 AATA
1 AATA
103101427 ATAATAATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
7 14 0.37
8 24 0.63
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (8 bp):
AATATTAA
Found at i:103101418 original size:16 final size:15
Alignment explanation
Indices: 103101381--103101426 Score: 67
Period size: 16 Copynumber: 3.1 Consensus size: 15
103101371 GATGTGAATA
103101381 ATAAAATA-TAAAAT
1 ATAAAATATTAAAAT
103101395 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
103101410 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
103101426 A
1 A
103101427 ATAATAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 8 0.28
15 8 0.28
16 13 0.45
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:103101591 original size:20 final size:21
Alignment explanation
Indices: 103101540--103101595 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
103101530 ATACTACATC
103101540 AATATGTACAT-ATATAAAAA
1 AATATGTACATAATATAAAAA
* * *
103101560 AATACGT-GATAATAT-TAAA
1 AATATGTACATAATATAAAAA
103101579 AATATGTACATAATATA
1 AATATGTACATAATATA
103101596 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
AATATGTACATAATATAAAAA
Found at i:103101637 original size:22 final size:24
Alignment explanation
Indices: 103101574--103101638 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
103101564 CGTGATAATA
*
103101574 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
103101599 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
103101622 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
103101639 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:103101700 original size:22 final size:24
Alignment explanation
Indices: 103101570--103101782 Score: 87
Period size: 22 Copynumber: 9.0 Consensus size: 24
103101560 AATACGTGAT
* *
103101570 AATATTAAAAATATGTACATAATA
1 AATATTAAAGATATATACATAATA
* * * *
103101594 TAGTGTTAAAAATACATACATAAT-
1 -AATATTAAAGATATATACATAATA
*
103101618 -ATAGTT-AAGATATATACATAAGA
1 AATA-TTAAAGATATATACATAATA
* *
103101641 TAACATGTAAA-ATATATATATAAATAA
1 -AATAT-TAAAGATATATACAT-AAT-A
103101668 TTAATATTAAAGATATATACATAA-A
1 --AATATTAAAGATATATACATAATA
* *
103101693 AATA-TAAATATATATACGTAATA
1 AATATTAAAGATATATACATAATA
* *
103101716 TAGA-ATT-TA-A-ATATACCTAAT-
1 -A-ATATTAAAGATATATACATAATA
*
103101737 -ATATTAAAAGA-ATATATATAATA
1 AATATT-AAAGATATATACATAATA
*
103101760 AATATT-AAGAAATATA-ATAATA
1 AATATTAAAGATATATACATAATA
103101782 A
1 A
103101783 CAAAAAAGGA
Statistics
Matches: 146, Mismatches: 21, Indels: 45
0.69 0.10 0.21
Matches are distributed among these distances:
18 1 0.01
19 3 0.02
21 1 0.01
22 60 0.41
23 13 0.09
24 9 0.06
25 34 0.23
26 4 0.03
27 7 0.05
28 14 0.10
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (24 bp):
AATATTAAAGATATATACATAATA
Found at i:103103175 original size:77 final size:77
Alignment explanation
Indices: 103103016--103103267 Score: 359
Period size: 77 Copynumber: 3.3 Consensus size: 77
103103006 ATGTGAACCC
* * *
103103016 AAGGCTCAACTCACATCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAA-CGCCT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAG-CT
** *
103103078 CAGCGTGTGA-CTC
65 CAGCACGTGAGC-A
*
103103091 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
103103156 AGCACGTGAGCA
66 AGCACGTGAGCA
* *
103103168 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
103103233 AGCACGTGAGCA
66 AGCACGTGAGCA
* *
103103245 AATGCTCAACTCACTTCTCGCAA
1 AAGGCTCAACTCACCTCTCGCAA
103103268 AGTAGATTTT
Statistics
Matches: 160, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
75 31 0.19
77 127 0.79
78 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (77 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
AGCACGTGAGCA
Found at i:103103567 original size:76 final size:75
Alignment explanation
Indices: 103103404--103103594 Score: 271
Period size: 76 Copynumber: 2.6 Consensus size: 75
103103394 AGCATGTGAG
* * * * *
103103404 CCGAGACTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACATAAATTGAAATTACC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAAAAATTAAAAATACC
103103467 TCAGCGTGTC
66 TCAGCGTGTC
*
103103477 CCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGA-AAACAAAAATTTAAAAAATA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAAAAA-TT-AAAAATA
103103541 CCTCAGCGTGTC
64 CCTCAGCGTGTC
* *
103103553 CTGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTTT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
103103595 TACGAACAGA
Statistics
Matches: 105, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
73 31 0.30
74 9 0.09
75 9 0.09
76 56 0.53
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (75 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAAAAATTAAAAATACC
TCAGCGTGTC
Found at i:103103616 original size:13 final size:13
Alignment explanation
Indices: 103103598--103103623 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103103588 TTTTTTTTAC
103103598 GAACAGAAATGAA
1 GAACAGAAATGAA
103103611 GAACAGAAATGAA
1 GAACAGAAATGAA
103103624 AAGACCTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.23, T:0.08
Consensus pattern (13 bp):
GAACAGAAATGAA
Found at i:103103770 original size:14 final size:14
Alignment explanation
Indices: 103103751--103103800 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
103103741 GAGTTGATTT
* *
103103751 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
103103765 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
103103780 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
103103794 TT-AAAAA
1 TTGAAAAA
103103801 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:103103778 original size:160 final size:167
Alignment explanation
Indices: 103103477--103103952 Score: 535
Period size: 160 Copynumber: 2.8 Consensus size: 167
103103467 TCAGCGTGTC
* * *
103103477 CCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGA-AAACAAAAATTTAAAAAATA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAA-TT--GAAATA
* * * ** *
103103541 CCTCAGCGTGTCCTGAGGCTCAACTCACCCCTCGCAATATGAGTTGATTTTTTTTACGAACAGAA
63 CCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAGAA
*
103103606 A-TG-AAGAACAGAAA-T-G-AAAAGACCTCAACATGTGAG
127 ATTGAAAAAACAGAAATTAGAAAAAGACCTCAACATGTGAG
*
103103642 CCGAGGCT-AACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAGAAATTGAAATACCT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAATACCT
* *
103103704 CAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTG
66 CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTG
*
103103768 AAAAAACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAG
131 AAAAAACAGAAATT-------AG-----AAAAAGACCTCAACATGTGAG
* *
103103817 CCGAGACTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAAATAC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTG--AAATAC
*
103103882 CTCAGCGTGTAAGCC-AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAATAGAA
64 CTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAA
103103945 ATTGAAAA
127 ATTGAAAA
103103953 CACCTCAGCA
Statistics
Matches: 265, Mismatches: 20, Indels: 36
0.83 0.06 0.11
Matches are distributed among these distances:
158 12 0.05
159 2 0.01
160 59 0.22
161 1 0.00
162 9 0.03
163 9 0.03
164 23 0.09
165 8 0.03
169 1 0.00
175 26 0.10
176 23 0.09
177 1 0.00
178 20 0.08
180 16 0.06
181 47 0.18
182 8 0.03
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (167 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAATACCT
CAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTG
AAAAAACAGAAATTAGAAAAAGACCTCAACATGTGAG
Found at i:103103904 original size:77 final size:74
Alignment explanation
Indices: 103103780--103104019 Score: 303
Period size: 70 Copynumber: 3.2 Consensus size: 74
103103770 AAAACAGAAA
* * *
103103780 TTGAAAAGCAGAAATT-AAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCACAATA
1 TTGAAAA-CAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATA
103103844 TGAGTTGATTTTT
63 TGAGTTGA-TTTT
* *
103103857 TTGACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAGGCTCAACTCACCTCTCGCAATAT
1 TTGA-AAACAGAAATTGAAAAACACCTCAGCATGT-AGCCAGGCTCAACTCACCTCTCGCAATAT
103103922 GAGTTGATTTT
64 GAGTTGATTTT
* *
103103933 TTGAAAATAGAAATTG-AAAACACCTCAGCATGT-G--AGGCTTAACTCACCTCTCGCAATATGA
1 TTGAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATGA
103103994 GTTGA-TTT
66 GTTGATTTT
*
103104002 TTGAAAAACATAAATTGA
1 TTG-AAAACAGAAATTGA
103104020 GCAGAAATTG
Statistics
Matches: 148, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
69 6 0.04
70 42 0.28
72 1 0.01
74 15 0.10
75 11 0.07
76 8 0.05
77 42 0.28
78 23 0.16
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (74 bp):
TTGAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:103103921 original size:181 final size:173
Alignment explanation
Indices: 103103599--103103952 Score: 516
Period size: 181 Copynumber: 2.0 Consensus size: 173
103103589 TTTTTTTACG
* * *
103103599 AACAGAAATGAAGAACAGAAATGAAAAGACCTCAACATGTGAGCCGAGGCTAACTCACCTCTCGC
1 AACAGAAATGAAGAACAGAAATAAAAAGACCTCAACATGTGAGCCGAGACTAACTCACCTCTCAC
103103664 AATATGAGTTAATTTTTGACAAACAGAAATTGAAATACCTCAGCGTGTCCCGAGGCTCAACTCAC
66 AATATGAGTTAATTTTTGACAAACAGAAATTGAAATACCTCAGCGTGTCCCGAGGCTCAACTCAC
* *
103103729 CTTTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTGAAAA
131 CTCTCGCAATATGAGTTGATTTTTTG-AAAATAGAAATTGAAAA
*
103103772 AACAGAAATTGAA-AAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTC
1 AACAGAAA-TGAAGAA-CAGAAA-TAAAAAGACCTCAACATGTGAGCCGAGACT-AACTCACCTC
* *
103103836 TCACAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCC-AGG
62 TCACAATATGAGTT-A-ATTTTTGACAAACAGAAATTG--AAATACCTCAGCGTGT--CCCGAGG
103103900 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTGAAAA
121 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTGAAAA
103103953 CACCTCAGCA
Statistics
Matches: 162, Mismatches: 8, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
173 10 0.06
174 10 0.06
175 27 0.17
176 23 0.14
177 1 0.01
178 20 0.12
180 16 0.10
181 47 0.29
182 8 0.05
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.25
Consensus pattern (173 bp):
AACAGAAATGAAGAACAGAAATAAAAAGACCTCAACATGTGAGCCGAGACTAACTCACCTCTCAC
AATATGAGTTAATTTTTGACAAACAGAAATTGAAATACCTCAGCGTGTCCCGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTGAAAA
Found at i:103104136 original size:156 final size:154
Alignment explanation
Indices: 103103901--103104253 Score: 423
Period size: 160 Copynumber: 2.2 Consensus size: 154
103103891 TAAGCCAGGC
103103901 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATAGAAATTGAAAACACCTCAGCATGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATA-AAATTGAAAACACCTCA-CATGT
* * *
103103966 GAGGCTTAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-A-AAAACATAAATTG-AGCAGAAA
64 GAGGCTTAACTCACCTCTCACAATATGAGTTGATTTTTTGAATAAAACAGAAATTGAAACAGAAA
* * *
103104027 TTGAAAATACCTCAACGGGTCTTGAGGT
129 TGGAAAACACCTC-A-GCGTCTTGAGGT
** *
103104055 TCAACTCA-CTCTCGTCGAATATGAGTTGATTTTTTGATGAT-AAATTGAAAATACCTCA-ATGT
1 TCAACTCACCTCTCG-C-AATATGAGTTGATTTTTTGAAAATAAAATTGAAAACACCTCACATGT
*
103104117 GACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAA
64 GA---G-GCTT-AACTCACCTCTCACAATATGAGTTGATTTTTTGAA-TAAAACAGAAATTG-AA
*
103104182 ATAGAAATGGAAAACACCTCAGCGTCTTGAGGT
122 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGT
*
103104215 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA
103104254 CACATAAATT
Statistics
Matches: 170, Mismatches: 14, Indels: 24
0.82 0.07 0.12
Matches are distributed among these distances:
151 6 0.04
153 22 0.13
154 10 0.06
155 25 0.15
156 25 0.15
157 6 0.04
158 1 0.01
159 11 0.06
160 40 0.24
161 7 0.04
162 17 0.10
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (154 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAATAAAATTGAAAACACCTCACATGTGA
GGCTTAACTCACCTCTCACAATATGAGTTGATTTTTTGAATAAAACAGAAATTGAAACAGAAATG
GAAAACACCTCAGCGTCTTGAGGT
Found at i:103104160 original size:72 final size:72
Alignment explanation
Indices: 103104024--103104162 Score: 219
Period size: 72 Copynumber: 1.9 Consensus size: 72
103104014 AATTGAGCAG
* *
103104024 AAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACTCTCGTCGAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCACTCTCGTCCAATATGAGTTGATTTTT
103104089 TGATGAT
66 TGATGAT
* *
103104096 AAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCAC-CTC-TCACAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCACTCTCGTC-CAATATGAGTTGATTTT
103104159 TTGA
65 TTGA
103104163 ATTAAAACAG
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
70 2 0.03
71 23 0.37
72 37 0.60
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (72 bp):
AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCACTCTCGTCCAATATGAGTTGATTTTT
TGATGAT
Found at i:103104465 original size:73 final size:72
Alignment explanation
Indices: 103104320--103104578 Score: 293
Period size: 73 Copynumber: 3.6 Consensus size: 72
103104310 TGGCCCGAGA
* *
103104320 CTCAACTCATCTCTCTCGC-ATATGAGTTGATTCTTTT-AAAAGCAAAAA-TGAAAACCTCAGCG
1 CTCAACTCACCTCT-TCGCAATATGAGTTGATTTTTTTGAAAA--AAAAATTGAAAACCTCAGCG
**
103104382 TGTCCCGAGG
63 TGTCTTGAGG
* *
103104392 CTCAACTCACCTC-TCGCAATATGAGTTGATTTTTTTGATAAAATAGAATTGAAAATCTCAGCGT
1 CTCAACTCACCTCTTCGCAATATGAGTTGATTTTTTTGA-AAAA-AAAATTGAAAACCTCAGCGT
103104456 GTCTTGAGG
64 GTCTTGAGG
103104465 CTCAACTCACC-CTTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 CTCAACTCACCTCTTCGCAATATGAGTTGATTTTTTTGA-AAA-AAAAATTGAAA--ACCTCAGC
103104527 --GTCTTGAGG
62 GTGTCTTGAGG
*
103104536 CTCAACTCACTTCTTGCGCAATATGAGTTGATTTTTTTTGAAA
1 CTCAACTCACCTCTT-CGCAATATGAGTTGA-TTTTTTTGAAA
103104579 CATAAATTAA
Statistics
Matches: 163, Mismatches: 10, Indels: 25
0.82 0.05 0.13
Matches are distributed among these distances:
70 4 0.02
71 56 0.34
72 21 0.13
73 73 0.45
75 2 0.01
76 7 0.04
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (72 bp):
CTCAACTCACCTCTTCGCAATATGAGTTGATTTTTTTGAAAAAAAAATTGAAAACCTCAGCGTGT
CTTGAGG
Found at i:103104722 original size:161 final size:160
Alignment explanation
Indices: 103104438--103104731 Score: 418
Period size: 163 Copynumber: 1.8 Consensus size: 160
103104428 GATAAAATAG
* **
103104438 AATTGAAAATCTCAGCGTGTCTTGAGGCTCAACTCACCCTTCGCAATATGAGTTGATTTTTGACA
1 AATTGAAAATCTCAGCGTGTCCTGAGGCTCAACTCACCCTTCGCAATATGAGTTGATAATTGACA
* ** * *
103104503 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTTGCGCAATATGAGTTGAT
66 AACAAAAATTGAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTT-CGCAATATGAGCTGAT
103104568 TTTTTTTGAAACATAAATTAAAAAAAACGAA
130 TTTTTTTGAAACATAAATTAAAAAAAACGAA
103104599 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA-CCTCTCGCAATATGAGTTGA-AATT-
1 AATTGAAAAT--CTCAGCGTGTCCTGAGGCTCAACTCACCCT-TCGCAATATGAGTTGATAATTG
103104661 A-AACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTT-GCAATATGAG
63 ACAA-ACAAAAATTGAAAATACCTCAGCGT--CCCGAGGCTCAACTCACCTCTTCGCAATATGAG
103104724 CTGATTTT
125 CTGATTTT
103104732 GAAAAAGTAG
Statistics
Matches: 119, Mismatches: 8, Indels: 12
0.86 0.06 0.09
Matches are distributed among these distances:
160 2 0.02
161 52 0.44
162 5 0.04
163 60 0.50
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (160 bp):
AATTGAAAATCTCAGCGTGTCCTGAGGCTCAACTCACCCTTCGCAATATGAGTTGATAATTGACA
AACAAAAATTGAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTTCGCAATATGAGCTGATT
TTTTTTGAAACATAAATTAAAAAAAACGAA
Found at i:103104996 original size:73 final size:73
Alignment explanation
Indices: 103104857--103105202 Score: 470
Period size: 73 Copynumber: 4.8 Consensus size: 73
103104847 TGAATTGAAA
* * * *
103104857 AAAATACCACAGTGTGTACTGA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAA
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAA
103104921 CAGAAATTG
65 CAGAAATTG
*
103104930 AAAATACCTCAGCATGTGCC-GAGGCTCAACTCACCTCTCGCAATAT-AGTTGATTGTTTTGAAA
1 AAAATACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAA
103104993 ACAGAAATTG
64 ACAGAAATTG
* * ** * *
103105003 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAG-TGA-ATTTTGAAAAC
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAC
103105066 AGAAATTG
66 AGAAATTG
* * *
103105074 AAATTACCTCAGCGTGTCCTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGATTTTTTTAACAA
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA-AA
103105138 CAGAAATTG
65 CAGAAATTG
* *
103105147 AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
103105203 GAAAAACAAA
Statistics
Matches: 245, Mismatches: 19, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
70 14 0.06
71 51 0.21
72 9 0.04
73 125 0.51
74 46 0.19
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.30
Consensus pattern (73 bp):
AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAC
AGAAATTG
Found at i:103105209 original size:144 final size:144
Alignment explanation
Indices: 103104857--103105220 Score: 463
Period size: 144 Copynumber: 2.5 Consensus size: 144
103104847 TGAATTGAAA
* * * *
103104857 AAAATACCACAGTGTGTACTGA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAA
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTGAAAA
103104921 CAGAAATTGAAAATACCTCAGCATGTGCCGAGGCTCAACTCACCTCTCGCAATATAGTTGATTGT
63 CAGAAATTGAAAATACCTCAGCATGTGCCGAGGCTCAACTCACCTCTCGCAATATAGTTGATTGT
103104986 TTTGAAAACAGAAATTG
128 TTTGAAAACAGAAATTG
* * ** *
103105003 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAG-TGAATTTTGAAAACA
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTGAAAACA
* * *
103105067 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGATT-T
65 GAAATTGAAAATACCTCAGCATGTGCC-GAGGCTCAACTCACCTCTCGCAATAT-AGTTGATTGT
*
103105129 TTTTAACAACAGAAATTG
128 TTTGAA-AACAGAAATTG
* *
103105147 AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTGAAAAACA
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACA
*
103105211 AAAATT-AAAA
65 GAAATTGAAAA
103105221 GGCTTAACTC
Statistics
Matches: 189, Mismatches: 22, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
143 26 0.14
144 118 0.62
145 2 0.01
146 19 0.10
147 24 0.13
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (144 bp):
AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAG
AAATTGAAAATACCTCAGCATGTGCCGAGGCTCAACTCACCTCTCGCAATATAGTTGATTGTTTT
GAAAACAGAAATTG
Found at i:103105377 original size:71 final size:68
Alignment explanation
Indices: 103105220--103105394 Score: 208
Period size: 71 Copynumber: 2.5 Consensus size: 68
103105210 AAAAATTAAA
* * * * * **
103105220 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
103105284 CCCG
65 CCCG
*
103105288 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTT-AAAAAAAAAACTAAAAATACCTCAACGT
**
103105353 GTCTTG
64 G-CCCG
103105359 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTT
103105395 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
67 1 0.01
68 25 0.27
69 5 0.05
70 24 0.26
71 36 0.39
72 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (68 bp):
AGGCTCAACTCACTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTGC
CCG
Found at i:103105383 original size:191 final size:195
Alignment explanation
Indices: 103105024--103105393 Score: 507
Period size: 191 Copynumber: 1.9 Consensus size: 195
103105014 ACGTGTCTTG
** * * * *
103105024 AGGCTCAACTCATTTCTCGCAATATAAGTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATAAGTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCGT
* * * * * *
103105089 GTCCTGAGGCTCAACTCATTCTCGCAATATGAGTTGATTTTTTTAACAACAGAAATTGAAATTAC
66 GTCCCGAGGCTCAACTCATTCTCGCAATATGAGTTGA-TTTTTGAACAAAAAAAATTAAAAATAC
*
103105154 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTGAAAAACAAAAATTAA
130 CTCAACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTGAAAAACAAAAATTAA
103105219 A
195 A
* * * *
103105220 AGGCTTAACTCACCTCTCGCAATATGAGTCAA-TTT-AAAACATAAACTAAAAATACCTCGGCGT
1 AGGCTCAACTCACCTCTCGCAATATAAGTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCGT
103105283 G-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTGAA-AAAAAAAATTAAAAATAC
66 GTCCCGAGGCTCAACTCA-TTCTCGCAATATGAGTTGATTTTTGAACAAAAAAAATTAAAAATAC
* * *
103105345 CTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTT
130 CTCAACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
103105394 TCCTTGGAAA
Statistics
Matches: 153, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
191 59 0.39
192 6 0.04
193 15 0.10
194 43 0.28
195 3 0.02
196 27 0.18
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (195 bp):
AGGCTCAACTCACCTCTCGCAATATAAGTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCGT
GTCCCGAGGCTCAACTCATTCTCGCAATATGAGTTGATTTTTGAACAAAAAAAATTAAAAATACC
TCAACGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTGAAAAACAAAAATTAAA
Found at i:103113701 original size:12 final size:12
Alignment explanation
Indices: 103113681--103113716 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
103113671 TGGGATATGC
*
103113681 AATGTATGAATG
1 AATGCATGAATG
103113693 AATGCATGAATG
1 AATGCATGAATG
103113705 AATGCATGAATG
1 AATGCATGAATG
103113717 TCAAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:103115312 original size:24 final size:24
Alignment explanation
Indices: 103115285--103115340 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
103115275 TAATGATGTG
103115285 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-TAAAATATTAA
* *
103115309 AATATTAAAATATTAAAATATTAG
1 AATAATAAAATATTAAAATATTAA
103115333 AATAATAA
1 AATAATAA
103115341 TAATTAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 7 0.25
24 21 0.75
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (24 bp):
AATAATAAAATATTAAAATATTAA
Found at i:103115319 original size:8 final size:8
Alignment explanation
Indices: 103115285--103115336 Score: 70
Period size: 8 Copynumber: 6.5 Consensus size: 8
103115275 TAATGATGTG
*
103115285 AATAATAA
1 AATATTAA
103115293 AATATATAA
1 AATAT-TAA
103115302 AATA-TAA
1 AATATTAA
103115309 AATATTAA
1 AATATTAA
103115317 AATATTAA
1 AATATTAA
*
103115325 AATATTAG
1 AATATTAA
103115333 AATA
1 AATA
103115337 ATAATAATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
7 7 0.17
8 26 0.65
9 7 0.17
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (8 bp):
AATATTAA
Found at i:103115504 original size:20 final size:20
Alignment explanation
Indices: 103115452--103115508 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
103115442 ATACTACATC
*
103115452 AATATGTACATATATAAAAAA
1 AATATGTACATA-ATATAAAA
* * *
103115473 AATACGT-GATAATATTAAA
1 AATATGTACATAATATAAAA
103115492 AATATGTACATAATATA
1 AATATGTACATAATATA
103115509 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AATATGTACATAATATAAAA
Found at i:103115603 original size:25 final size:25
Alignment explanation
Indices: 103115481--103115700 Score: 120
Period size: 25 Copynumber: 9.0 Consensus size: 25
103115471 AAAATACGTG
* *
103115481 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
103115506 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
103115531 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * * *
103115553 ATAACATGTAAAAAAAATATAAATAAT
1 ATAATAT-T-AAAGATATATACATAAT
*
103115580 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * * *
103115605 ATAGTATAAAATATATATATACGTAAT
1 ATAATAT-TAA-AGATATATACATAAT
* *
103115632 ATAGA-ATTTAA-A-ATATACCTAAT
1 ATA-ATATTAAAGATATATACATAAT
* *
103115655 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
*
103115677 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
103115700 A
1 A
103115701 ACAAAAAAGG
Statistics
Matches: 150, Mismatches: 32, Indels: 28
0.71 0.15 0.13
Matches are distributed among these distances:
21 4 0.03
22 27 0.18
23 28 0.19
24 8 0.05
25 44 0.29
26 4 0.03
27 35 0.23
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:103115625 original size:52 final size:49
Alignment explanation
Indices: 103115481--103115700 Score: 163
Period size: 52 Copynumber: 4.5 Consensus size: 49
103115471 AAAATACGTG
* * * *
103115481 ATAATATTAAAAATATGTACATAATATAGTGTTAAAAATACATACATAAT
1 ATAATATT-AAGATATATACATAATATAGTGTAAAAAATATATACATAAT
* * * * *
103115531 AT-A-GTTAAGATATATACATAAGATAACATGTAAAAAAAATATAAATAAT
1 ATAATATTAAGATATATACATAATAT-A-GTGTAAAAAATATATACATAAT
* * *
103115580 ATAATATTAAAGATATATACATAAAATAGTATAAAATATATATATACGTAAT
1 ATAATATT-AAGATATATACATAATATAGTGTAAAA-A-ATATATACATAAT
*
103115632 ATAGA-ATTTAA-A-ATATACCTAATATA-T-TAAAAGAATATAT--ATAAT
1 ATA-ATA-TTAAGATATATACATAATATAGTGTAAAA-AATATATACATAAT
*
103115677 ATAATATTAAGAAATATA-ATAATA
1 ATAATATTAAGATATATACATAATA
103115701 ACAAAAAAGG
Statistics
Matches: 137, Mismatches: 21, Indels: 29
0.73 0.11 0.16
Matches are distributed among these distances:
44 5 0.04
45 14 0.10
46 5 0.04
47 21 0.15
48 9 0.07
49 21 0.15
50 21 0.15
51 5 0.04
52 33 0.24
53 3 0.02
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (49 bp):
ATAATATTAAGATATATACATAATATAGTGTAAAAAATATATACATAAT
Found at i:103116209 original size:30 final size:30
Alignment explanation
Indices: 103116173--103116347 Score: 296
Period size: 30 Copynumber: 5.8 Consensus size: 30
103116163 TAGGTACAAG
* *
103116173 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
103116203 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
103116233 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
103116263 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
103116293 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
103116323 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
103116348 TGAGAAAAGT
Statistics
Matches: 135, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 135 1.00
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:103116266 original size:60 final size:60
Alignment explanation
Indices: 103116173--103116347 Score: 332
Period size: 60 Copynumber: 2.9 Consensus size: 60
103116163 TAGGTACAAG
*
103116173 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
103116233 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
103116293 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
103116348 TGAGAAAAGT
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 113 1.00
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:103119629 original size:42 final size:41
Alignment explanation
Indices: 103119576--103119659 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 41
103119566 GAAACTTATG
* *
103119576 AAAAAATATCAATACAAAAAGATAATACACTAGAAAAGATAA
1 AAAAAAAATCAATACAAAAAGATAATAAACTAG-AAAGATAA
* * *
103119618 AAAAAAAATCAATACAAAGAGATAGTAAACTTGAAAGATAA
1 AAAAAAAATCAATACAAAAAGATAATAAACTAGAAAGATAA
103119659 A
1 A
103119660 TGAGAGATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 9 0.24
42 28 0.76
ACGTcount: A:0.65, C:0.08, G:0.10, T:0.17
Consensus pattern (41 bp):
AAAAAAAATCAATACAAAAAGATAATAAACTAGAAAGATAA
Found at i:103123613 original size:21 final size:20
Alignment explanation
Indices: 103123587--103123632 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
103123577 ATATTATTTA
103123587 TATATTATCTATCATA-TTGTT
1 TATATTAT-TAT-ATATTTGTT
103123608 TATATTATTATATATTTTGTT
1 TATATTATTATATA-TTTGTT
103123629 TATA
1 TATA
103123633 AATTTTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.13
20 3 0.13
21 17 0.74
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (20 bp):
TATATTATTATATATTTGTT
Found at i:103135841 original size:44 final size:44
Alignment explanation
Indices: 103135763--103136659 Score: 391
Period size: 44 Copynumber: 20.6 Consensus size: 44
103135753 ATCTGGCGTA
* * *
103135763 TCTGTATTAGAC-GAGAAGCAGATAGAAGAAAGAAGATTTGGCGTC
1 TCTGTATT-GACAGAG-AGCAGATCGAAGATAGAAGATTTGGCATC
* * *
103135808 TCTGTATTGACAGAGAGCAGATCGAAGACAGAAGATCTGACAT-
1 TCTGTATTGACAGAGAGCAGATCGAAGATAGAAGATTTGGCATC
* * * * ***
103135851 TCGTGTGTTTACATCAAAGCAGATC------A-AAGATTTGATGTC
1 TC-TGTATTGACA-GAGAGCAGATCGAAGATAGAAGATTTGGCATC
* * * * *
103135890 TCTGTATTGACAGAGAACAGATCAAAGATAGAAGATCTGACATT
1 TCTGTATTGACAGAGAGCAGATCGAAGATAGAAGATTTGGCATC
* * * ** **
103135934 TGTGTGTTTACATCGA--A-A-C--AGATCA-AAGATTTGGTGTC
1 TCTGTATTGACAGAGAGCAGATCGAAGAT-AGAAGATTTGGCATC
* * *
103135972 TCTGTATTGACAGAGAACAGATCAAAGATAGAAGATTTGACATTC
1 TCTGTATTGACAGAGAGCAGATCGAAGATAGAAGATTTGGCA-TC
* * ** * *
103136017 ATTTGT-TT-ATATCG-G-AG--C--AGATTGAAGATTTGGCGTC
1 -TCTGTATTGACAGAGAGCAGATCGAAGATAGAAGATTTGGCATC
* * * * ** *
103136054 TCTGTATTAGACGGGGAGAAAATCGAAGATAGCTGATTTGGCGTC
1 TCTGTATT-GACAGAGAGCAGATCGAAGATAGAAGATTTGGCATC
* * * * * * *
103136099 TCTGTATTGGCGGAGAGTAGATC-AGAGAAAGCACATATGGCATC
1 TCTGTATTGACAGAGAGCAGATCGA-AGATAGAAGATTTGGCATC
* ** *
103136143 TCTGTATTGACAGAGAGCAGATCAAAGATAGCTGATTTGGCGTC
1 TCTGTATTGACAGAGAGCAGATCGAAGATAGAAGATTTGGCATC
* * * * *
103136187 TTTGTATTGAC-GAAGAACAGATC-AGAGA-AAACACATCTGGCATC
1 TCTGTATTGACAG-AGAGCAGATCGA-AGATAGA-AGATTTGGCATC
* * * *
103136231 TCTGTATTGACAGAGAGAAAATCGAAGATA-ACTGATTTGGCGTC
1 TCTGTATTGACAGAGAGCAGATCGAAGATAGA-AGATTTGGCATC
* * *
103136275 TCTGTATTGACAGGGAGCAGATCAAAGAT-GACAGATTTGGTATC
1 TCTGTATTGACAGAGAGCAGATCGAAGATAGA-AGATTTGGCATC
* * **
103136319 TTTGTATTTGATAGAGAGCAGATCGAAGATAGCTGATTTGGCATC
1 TCTGTA-TTGACAGAGAGCAGATCGAAGATAGAAGATTTGGCATC
* * *
103136364 TCTATATTGACAGGGAGCAGATCGAAGAT-GACAAATTTGGCATC
1 TCTGTATTGACAGAGAGCAGATCGAAGATAGA-AGATTTGGCATC
* * * * * * *
103136408 TCTGTGTTAGACGGGGAGCAGGTCGAAGATAG-TGTATCTGACAT-
1 TCTGTATT-GACAGAGAGCAGATCGAAGATAGAAG-ATTTGGCATC
* * * **
103136452 TCGTGTGTTCACATCGA-AGCAGATCGGAGATAGCTGATTTGGCATC
1 TC-TGTATTGACA--GAGAGCAGATCGAAGATAGAAGATTTGGCATC
* *
103136498 TCTGTATTGACAGGGAGCAAATCGAAGAT-GACAGATTTGGCATC
1 TCTGTATTGACAGAGAGCAGATCGAAGATAGA-AGATTTGGCATC
* * * *
103136542 TCTGTATTAGAC-GAGGAGCAGGTCGAAGATAG-TGTATCTGACAT-
1 TCTGTATT-GACAGA-GAGCAGATCGAAGATAGAAG-ATTTGGCATC
* * *
103136586 TC-GTATGTTCACATTGA-AGCAGATCGAAGAT-GACAGATTTGGCGTT
1 TCTGTA--TTGACA--GAGAGCAGATCGAAGATAGA-AGATTTGGCATC
* *
103136632 TCTATATTGACGGAGAGCAGATCGAAGA
1 TCTGTATTGACAGAGAGCAGATCGAAGA
103136660 AAGTACATCT
Statistics
Matches: 639, Mismatches: 147, Indels: 133
0.70 0.16 0.14
Matches are distributed among these distances:
36 4 0.01
37 12 0.02
38 54 0.08
39 6 0.01
40 4 0.01
41 3 0.00
42 4 0.01
43 17 0.03
44 321 0.50
45 195 0.31
46 15 0.02
47 4 0.01
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.27
Consensus pattern (44 bp):
TCTGTATTGACAGAGAGCAGATCGAAGATAGAAGATTTGGCATC
Found at i:103135911 original size:37 final size:37
Alignment explanation
Indices: 103135870--103136000 Score: 113
Period size: 37 Copynumber: 3.3 Consensus size: 37
103135860 TACATCAAAG
103135870 CAGATCAAAGATTTGATGTCTCTGTATTGACAGAGAA
1 CAGATCAAAGATTTGATGTCTCTGTATTGACAGAGAA
* * * *
103135907 CAGATCAAAGA-TAGAAGATCTGACATTTGTGTGTTTACATCGA-AA
1 CAGATCAAAGATTTGATG-TCT--C-----TGTATTGACA--GAGAA
*
103135952 CAGATCAAAGATTTGGTGTCTCTGTATTGACAGAGAA
1 CAGATCAAAGATTTGATGTCTCTGTATTGACAGAGAA
103135989 CAGATCAAAGAT
1 CAGATCAAAGAT
103136001 AGAAGATTTG
Statistics
Matches: 73, Mismatches: 9, Indels: 24
0.69 0.08 0.23
Matches are distributed among these distances:
36 6 0.08
37 28 0.38
38 8 0.11
39 1 0.01
43 1 0.01
44 8 0.11
45 16 0.22
46 5 0.07
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (37 bp):
CAGATCAAAGATTTGATGTCTCTGTATTGACAGAGAA
Found at i:103135932 original size:82 final size:82
Alignment explanation
Indices: 103135795--103136061 Score: 383
Period size: 82 Copynumber: 3.3 Consensus size: 82
103135785 TAGAAGAAAG
* * *
103135795 AAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGACAGAAGATCTGACATTCGTGTGTT
1 AAGATTTGGCGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATCTGACATTCGTGTGTT
103135860 TACATCAAAGCAGATCA
66 TACATCAAAGCAGATCA
** *
103135877 AAGATTTGATGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATCTGACATTTGTGTGTT
1 AAGATTTGGCGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATCTGACATTCGTGTGTT
103135942 TACATCGAAA-CAGATCA
66 TACATC-AAAGCAGATCA
* * * *
103135959 AAGATTTGGTGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATTTGACATTCATTTGTT
1 AAGATTTGGCGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATCTGACATTCGTGTGTT
* ** **
103136024 TATATCGGAGCAGATTG
66 TACATCAAAGCAGATCA
103136041 AAGATTTGGCGTCTCTGTATT
1 AAGATTTGGCGTCTCTGTATT
103136062 AGACGGGGAG
Statistics
Matches: 166, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
81 1 0.01
82 162 0.98
83 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (82 bp):
AAGATTTGGCGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATCTGACATTCGTGTGTT
TACATCAAAGCAGATCA
Found at i:103136459 original size:45 final size:44
Alignment explanation
Indices: 103136334--103136585 Score: 154
Period size: 45 Copynumber: 5.6 Consensus size: 44
103136324 ATTTGATAGA
* * * * *
103136334 GAGCAGATCGAAGATAGCTGATTTGGCATCTCTATATT-GACAGG
1 GAGCAGATCGAAGATAG-TGATCTGACATCTCTGTGTTAGACGGG
*** * *
103136378 GAGCAGATCGAAGATGACAAATTTGGCATCTCTGTGTTAGACGGG
1 GAGCAGATCGAAGAT-AGTGATCTGACATCTCTGTGTTAGACGGG
* *
103136423 GAGCAGGTCGAAGATAGTGTATCTGACAT-TCGTGTGTTCACATC--G
1 GAGCAGATCGAAGATAGTG-ATCTGACATCTC-TGTGTT-AGA-CGGG
* * * * * *
103136468 AAGCAGATCGGAGATAGCTGATTTGGCATCTCTGTATT-GACAGG
1 GAGCAGATCGAAGATAG-TGATCTGACATCTCTGTGTTAGACGGG
* ** * * * *
103136512 GAGCAAATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGAG
1 GAGCAGATCGAAGAT-AGTGATCTGACATCTCTGTGTTAGACGGG
*
103136557 GAGCAGGTCGAAGATAGTGTATCTGACAT
1 GAGCAGATCGAAGATAGTG-ATCTGACAT
103136586 TCGTATGTTC
Statistics
Matches: 162, Mismatches: 33, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 68 0.42
45 85 0.52
46 6 0.04
47 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (44 bp):
GAGCAGATCGAAGATAGTGATCTGACATCTCTGTGTTAGACGGG
Found at i:103136498 original size:134 final size:134
Alignment explanation
Indices: 103136335--103136659 Score: 519
Period size: 134 Copynumber: 2.4 Consensus size: 134
103136325 TTTGATAGAG
103136335 AGCAGATCGAAGATAGCTGATTTGGCATCTCTATATTGACAGGGAGCAGATCGAAGATGACAAAT
1 AGCAGATCGAAGATAGCTGATTTGGCATCTCTATATTGACAGGGAGCAGATCGAAGATGACAAAT
* * *
103136400 TTGGCATCTCTGTGTTAGACGGGGAGCAGGTCGAAGATAGTGTATCTGACATTCGTGTGTTCACA
66 TTGGCATCTCTGTATTAGACGAGGAGCAGGTCGAAGATAGTGTATCTGACATTCGTATGTTCACA
103136465 TCGA
131 TCGA
* * * *
103136469 AGCAGATCGGAGATAGCTGATTTGGCATCTCTGTATTGACAGGGAGCAAATCGAAGATGACAGAT
1 AGCAGATCGAAGATAGCTGATTTGGCATCTCTATATTGACAGGGAGCAGATCGAAGATGACAAAT
103136534 TTGGCATCTCTGTATTAGACGAGGAGCAGGTCGAAGATAGTGTATCTGACATTCGTATGTTCACA
66 TTGGCATCTCTGTATTAGACGAGGAGCAGGTCGAAGATAGTGTATCTGACATTCGTATGTTCACA
*
103136599 TTGA
131 TCGA
* * *
103136603 AGCAGATCGAAGAT-GACAGATTTGGCGTTTCTATATTGAC-GGAGAGCAGATCGAAGA
1 AGCAGATCGAAGATAG-CTGATTTGGCATCTCTATATTGACAGG-GAGCAGATCGAAGA
103136660 AAGTACATCT
Statistics
Matches: 175, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
133 3 0.02
134 172 0.98
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (134 bp):
AGCAGATCGAAGATAGCTGATTTGGCATCTCTATATTGACAGGGAGCAGATCGAAGATGACAAAT
TTGGCATCTCTGTATTAGACGAGGAGCAGGTCGAAGATAGTGTATCTGACATTCGTATGTTCACA
TCGA
Found at i:103136572 original size:89 final size:87
Alignment explanation
Indices: 103136042--103136727 Score: 426
Period size: 89 Copynumber: 7.7 Consensus size: 87
103136032 AGCAGATTGA
* * * *
103136042 AGATTTGGCGTCTCTGTATTAGACGGGGAGAAAATCGAAGATAGCTGATTTGGCGTCTCTGTATT
1 AGATTTGGCATCTCTGTATT-GACAGGGAGCAGATCGAAGATA-CTGATTTGGCGTCTCTGTATT
* * *
103136107 GGCG-GAGAGTAGATC-AGAGAAAGC
64 GACGAG-GAGCAGATCGA-AGATAGC
* * * * *
103136131 ACATATGGCATCTCTGTATTGACAGAGAGCAGATCAAAGATAGCTGATTTGGCGTCTTTGTATTG
1 AGATTTGGCATCTCTGTATTGACAGGGAGCAGATCGAAGATA-CTGATTTGGCGTCTCTGTATTG
* * * *
103136196 ACGAAGAACAGATC-AGAGAAAAC
65 ACGAGGAGCAGATCGA-AGATAGC
* * * * *
103136219 ACATCTGGCATCTCTGTATTGACAGAGAGAAAATCGAAGATAACTGATTTGGCGTCTCTGTATTG
1 AGATTTGGCATCTCTGTATTGACAGGGAGCAGATCGAAGAT-ACTGATTTGGCGTCTCTGTATTG
*
103136284 AC-AGGGAGCAGATCAAAGAT-GAC
65 ACGA-GGAGCAGATCGAAGATAG-C
* * * * * *
103136307 AGATTTGGTATCTTTGTATTTGATAGAGAGCAGATCGAAGATAGCTGATTTGGCATCTCTATATT
1 AGATTTGGCATCTCTGTA-TTGACAGGGAGCAGATCGAAGATA-CTGATTTGGCGTCTCTGTATT
103136372 GAC-AGGGAGCAGATCGAAGAT-GAC
64 GACGA-GGAGCAGATCGAAGATAG-C
* * * * * * * * *
103136396 AAATTTGGCATCTCTGTGTTAGACGGGGAGCAGGTCGAAGATAGTGTATCTGACAT-TCGTGTGT
1 AGATTTGGCATCTCTGTATT-GACAGGGAGCAGATCGAAGATACTG-ATTTGGCGTCTC-TGTAT
* * *
103136460 TCAC-ATCGAAGCAGATCGGAGATAGC
63 TGACGA--GGAGCAGATCGAAGATAGC
* * * *
103136486 TGATTTGGCATCTCTGTATTGACAGGGAGCAAATCGAAGATGACAGATTTGGCATCTCTGTATTA
1 AGATTTGGCATCTCTGTATTGACAGGGAGCAGATCGAAGAT-ACTGATTTGGCGTCTCTGTATT-
*
103136551 GACGAGGAGCAGGTCGAAGATAG-
64 GACGAGGAGCAGATCGAAGATAGC
* * * * * * * * *
103136574 TGTATCTGACAT-TC-GTATGTTCACATTGAAGCAGATCGAAGATGACAGATTTGGCGTTTCTAT
1 AG-ATTTGGCATCTCTGTA--TTGACA-GGGAGCAGATCGAAGAT-ACTGATTTGGCGTCTCTGT
* *
103136637 ATTGACG-GAGAGCAGATCGAAGAAAGT
61 ATTGACGAG-GAGCAGATCGAAGATAGC
* * * * * * * *** * *
103136664 ACATCTAGTATTTTTTTATTGACAAAAAACAGATTGAAGATAGCTGATTTGGCGTCTCTGTATT
1 AGATTTGGCATCTCTGTATTGACAGGGAGCAGATCGAAGATA-CTGATTTGGCGTCTCTGTATT
103136728 AGGCGGGGTG
Statistics
Matches: 481, Mismatches: 91, Indels: 51
0.77 0.15 0.08
Matches are distributed among these distances:
87 5 0.01
88 185 0.38
89 214 0.44
90 73 0.15
91 4 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.28
Consensus pattern (87 bp):
AGATTTGGCATCTCTGTATTGACAGGGAGCAGATCGAAGATACTGATTTGGCGTCTCTGTATTGA
CGAGGAGCAGATCGAAGATAGC
Found at i:103138317 original size:21 final size:20
Alignment explanation
Indices: 103138278--103138336 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 20
103138268 GTAAATAGTA
103138278 TATATATTAT-TTATATATTAT
1 TATATATT-TGTT-TATATTAT
103138299 CTATCATA-TTGTTTATATTAT
1 -TAT-ATATTTGTTTATATTAT
103138320 TATATATTTTGTTTATA
1 TATATA-TTTGTTTATA
103138337 AATTTTATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
19 3 0.09
20 3 0.09
21 18 0.55
22 6 0.18
23 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (20 bp):
TATATATTTGTTTATATTAT
Found at i:103146112 original size:5 final size:5
Alignment explanation
Indices: 103146087--103146123 Score: 56
Period size: 5 Copynumber: 7.0 Consensus size: 5
103146077 TTAATTTTAA
103146087 ATTTT ATTATT ATTATT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATT-TT ATT-TT ATTTT ATTTT ATTTT ATTTT
103146124 GTTTGTCAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 20 0.65
6 11 0.35
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:103147132 original size:118 final size:118
Alignment explanation
Indices: 103146924--103147159 Score: 337
Period size: 118 Copynumber: 2.0 Consensus size: 118
103146914 AGTTTTCCAT
* * * * * *
103146924 GGTTATGAGTATAGCTTAGATCGTGACAGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTATAGCTCAAATCATGACAGACTGAGTAACCGAGGTAAGGTGCTTGAGTTGTCATT
* *
103146989 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCACGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAACCGA
* *
103147042 GGTTATGAGTATGGCTCAAATCATGACTGACTGAGTAACCGAGGTAAGGTGCTTGAGTTGTCATT
1 GGTTATGAGTATAGCTCAAATCATGACAGACTGAGTAACCGAGGTAAGGTGCTTGAGTTGTCATT
* ****
103147107 CTACTTCATGTCAAAAGGTTGTGTGACGTGTTGGGTAAAACTCCGCTAACCGA
66 CTACTTCACGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAACCGA
103147160 AAATAAATAA
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
118 103 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (118 bp):
GGTTATGAGTATAGCTCAAATCATGACAGACTGAGTAACCGAGGTAAGGTGCTTGAGTTGTCATT
CTACTTCACGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAACCGA
Found at i:103147277 original size:11 final size:10
Alignment explanation
Indices: 103147267--103147346 Score: 56
Period size: 10 Copynumber: 8.1 Consensus size: 10
103147257 GTAAATAAAT
103147267 AATAAAAAAA
1 AATAAAAAAA
**
103147277 TTTTAAAAAAA
1 AAT-AAAAAAA
*
103147288 AAGAAAAAAA
1 AATAAAAAAA
*
103147298 AA-GAAAAAA
1 AATAAAAAAA
*
103147307 AA-GAAAAAA
1 AATAAAAAAA
* *
103147316 AAGAAGAAAA
1 AATAAAAAAA
*
103147326 AAGAAAAAAA
1 AATAAAAAAA
*
103147336 AAGAAAAAAA
1 AATAAAAAAA
103147346 A
1 A
103147347 TAAGTAATAA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
9 17 0.29
10 35 0.59
11 7 0.12
ACGTcount: A:0.85, C:0.00, G:0.09, T:0.06
Consensus pattern (10 bp):
AATAAAAAAA
Found at i:103147285 original size:1 final size:1
Alignment explanation
Indices: 103147281--103147346 Score: 69
Period size: 1 Copynumber: 66.0 Consensus size: 1
103147271 AAAAAATTTT
* * * * * * *
103147281 AAAAAAAAAGAAAAAAAAAGAAAAAAAAGAAAAAAAAGAAGAAAAAAGAAAAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
103147346 A
1 A
103147347 TAAGTAATAA
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (1 bp):
A
Found at i:103147294 original size:9 final size:9
Alignment explanation
Indices: 103147282--103147346 Score: 103
Period size: 9 Copynumber: 6.9 Consensus size: 9
103147272 AAAAATTTTA
103147282 AAAAAAAAG
1 AAAAAAAAG
103147291 AAAAAAAAAG
1 -AAAAAAAAG
103147301 AAAAAAAAG
1 AAAAAAAAG
103147310 AAAAAAAAG
1 AAAAAAAAG
103147319 AAGAAAAAAG
1 AA-AAAAAAG
103147329 AAAAAAAAAG
1 -AAAAAAAAG
103147339 AAAAAAAA
1 AAAAAAAA
103147347 TAAGTAATAA
Statistics
Matches: 53, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
9 28 0.53
10 23 0.43
11 2 0.04
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:103147294 original size:10 final size:10
Alignment explanation
Indices: 103147281--103147346 Score: 109
Period size: 10 Copynumber: 6.8 Consensus size: 10
103147271 AAAAAATTTT
103147281 AAAAAAAAAG
1 AAAAAAAAAG
103147291 AAAAAAAAAG
1 AAAAAAAAAG
103147301 -AAAAAAAAG
1 AAAAAAAAAG
103147310 -AAAAAAAAG
1 AAAAAAAAAG
*
103147319 AAGAAAAAAG
1 AAAAAAAAAG
103147329 AAAAAAAAAG
1 AAAAAAAAAG
103147339 AAAAAAAA
1 AAAAAAAA
103147347 TAAGTAATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
9 18 0.34
10 35 0.66
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:103147314 original size:28 final size:29
Alignment explanation
Indices: 103147282--103147346 Score: 114
Period size: 28 Copynumber: 2.3 Consensus size: 29
103147272 AAAAATTTTA
103147282 AAAAAAAAGAAAAAAAAAG-AAAAAAAAG
1 AAAAAAAAGAAAAAAAAAGAAAAAAAAAG
*
103147310 AAAAAAAAGAAGAAAAAAGAAAAAAAAAG
1 AAAAAAAAGAAAAAAAAAGAAAAAAAAAG
103147339 AAAAAAAA
1 AAAAAAAA
103147347 TAAGTAATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 18 0.51
29 17 0.49
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (29 bp):
AAAAAAAAGAAAAAAAAAGAAAAAAAAAG
Found at i:103147978 original size:27 final size:26
Alignment explanation
Indices: 103147918--103147979 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
103147908 AGTTTATTTT
103147918 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * *
103147944 ATAATTATTAGGATTATTCAA-ATTTAGG
1 AT-TTTATTAGGATAATT-AATA-TTAAG
103147972 ATTTTATT
1 ATTTTATT
103147980 TTAATTATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 19 0.66
28 8 0.28
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:103152629 original size:11 final size:12
Alignment explanation
Indices: 103152606--103152630 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103152596 AATCGATAGC
103152606 AAAACCCTAAAA
1 AAAACCCTAAAA
103152618 AAAACCCTAAAA
1 AAAACCCTAAAA
103152630 A
1 A
103152631 GTGAGATTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (12 bp):
AAAACCCTAAAA
Found at i:103156036 original size:21 final size:21
Alignment explanation
Indices: 103156011--103156051 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
103156001 CTAGTTTGTC
103156011 AAGTCAATTGGTAGTTAGCTG
1 AAGTCAATTGGTAGTTAGCTG
* *
103156032 AAGTCAGTTGGTTGTTAGCT
1 AAGTCAATTGGTAGTTAGCT
103156052 AGGTAGAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.37
Consensus pattern (21 bp):
AAGTCAATTGGTAGTTAGCTG
Found at i:103160197 original size:20 final size:23
Alignment explanation
Indices: 103160172--103160215 Score: 67
Period size: 20 Copynumber: 2.0 Consensus size: 23
103160162 TTTTAGTTAT
103160172 TAAATAC-A-AAAACA-ATGTAA
1 TAAATACTATAAAACACATGTAA
103160192 TAAATACTATAAAACACATGTAA
1 TAAATACTATAAAACACATGTAA
103160215 T
1 T
103160216 GTAGGAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 1 0.05
22 6 0.29
23 7 0.33
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (23 bp):
TAAATACTATAAAACACATGTAA
Found at i:103161749 original size:24 final size:24
Alignment explanation
Indices: 103161716--103161761 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
103161706 TAATTAGAAT
*
103161716 TAAATATAAAAAATATTTAAAACA
1 TAAATATAAAAAAAATTTAAAACA
*
103161740 TAAATGTAAAAAAAATTTAAAA
1 TAAATATAAAAAAAATTTAAAA
103161762 TAGCATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (24 bp):
TAAATATAAAAAAAATTTAAAACA
Found at i:103164319 original size:17 final size:17
Alignment explanation
Indices: 103164297--103164329 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
103164287 ACAAAAATTA
*
103164297 AAAAATGAAATTAAACG
1 AAAAATAAAATTAAACG
103164314 AAAAATAAAATTAAAC
1 AAAAATAAAATTAAAC
103164330 AGTCCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.06, G:0.06, T:0.18
Consensus pattern (17 bp):
AAAAATAAAATTAAACG
Found at i:103165758 original size:29 final size:30
Alignment explanation
Indices: 103165672--103165788 Score: 105
Period size: 33 Copynumber: 3.7 Consensus size: 30
103165662 TATATAAAAA
*
103165672 ATTATTTATCGTATATTATTT-TATTATATAT
1 ATTATTTAT--TATGTTATTTATATTATATAT
*
103165703 -TTATATTATTATGTTATGTTGTCTATTATATAT
1 ATTAT-TTATTATGTTA--TT-TATATTATATAT
103165736 ATTATTTATTAT-TTATTTATATTCTATCATAT
1 ATTATTTATTATGTTATTTATA-T-TAT-ATAT
*
103165768 ATTATTTATTATGTTGTTTAT
1 ATTATTTATTATGTTATTTAT
103165789 CTTTATCTTT
Statistics
Matches: 73, Mismatches: 3, Indels: 18
0.78 0.03 0.19
Matches are distributed among these distances:
29 9 0.12
30 7 0.10
31 9 0.12
32 20 0.27
33 24 0.33
34 4 0.05
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.62
Consensus pattern (30 bp):
ATTATTTATTATGTTATTTATATTATATAT
Found at i:103165773 original size:32 final size:32
Alignment explanation
Indices: 103165687--103165804 Score: 109
Period size: 32 Copynumber: 3.7 Consensus size: 32
103165677 TTATCGTATA
*
103165687 TTAT-TTTATTATATATTTATATTATTATGTTAT
1 TTATATTTATCATATA-TTAT-TTATTATGTTAT
* *
103165720 GTTGTCTATTAT-ATATATTATTTATTAT-TTAT
1 -TTATAT-TTATCATATATTATTTATTATGTTAT
*
103165752 TTATATTCTATCATATATTATTTATTATGTTGT
1 TTATATT-TATCATATATTATTTATTATGTTAT
* *
103165785 TTATCTTTATC-TTTATTATT
1 TTATATTTATCATATATTATT
103165805 ATAATTTTAA
Statistics
Matches: 73, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
30 1 0.01
31 15 0.21
32 24 0.33
33 16 0.22
34 7 0.10
35 6 0.08
36 4 0.05
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.64
Consensus pattern (32 bp):
TTATATTTATCATATATTATTTATTATGTTAT
Found at i:103167044 original size:16 final size:15
Alignment explanation
Indices: 103167015--103167057 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
103167005 TTACATCCAT
103167015 CTTTTCTATTTCTTCC
1 CTTTTCT-TTTCTTCC
*
103167031 CTCTTTCTTTTCTTTC
1 CT-TTTCTTTTCTTCC
103167047 CTTTTCTTTTC
1 CTTTTCTTTTC
103167058 ATTGAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 9 0.36
16 11 0.44
17 5 0.20
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.67
Consensus pattern (15 bp):
CTTTTCTTTTCTTCC
Found at i:103169227 original size:25 final size:25
Alignment explanation
Indices: 103169199--103169249 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
103169189 GCTAGGGACC
103169199 TATATTAAATTCATCCAAGCATGGG
1 TATATTAAATTCATCCAAGCATGGG
103169224 TATATTAAATTCATCCAAGCATGGG
1 TATATTAAATTCATCCAAGCATGGG
103169249 T
1 T
103169250 TTTGTCAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (25 bp):
TATATTAAATTCATCCAAGCATGGG
Found at i:103169786 original size:43 final size:43
Alignment explanation
Indices: 103169678--103169778 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 43
103169668 ACCGAGATGT
* * * *
103169678 GATTACATGTAAGACAATGTCTAAGACATTGGCATTGTATTGT
1 GATTACGTGTAAGACAATGTCTGAGACATTGGCATCGTATTGC
*
103169721 GATTACGTGTAAGACTATGTCTGAGACATTGGCATCGTTATT-C
1 GATTACGTGTAAGACAATGTCTGAGACATTGGCATCG-TATTGC
*
103169764 GATTTCGTGTAAGAC
1 GATTACGTGTAAGAC
103169779 CCTGTCTGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
43 47 0.92
44 4 0.08
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.35
Consensus pattern (43 bp):
GATTACGTGTAAGACAATGTCTGAGACATTGGCATCGTATTGC
Found at i:103173020 original size:72 final size:72
Alignment explanation
Indices: 103172935--103173079 Score: 254
Period size: 72 Copynumber: 2.0 Consensus size: 72
103172925 GCCTATTGTT
*
103172935 GGTGGCAGTCTGTGGTAAGGGGTACACGACTGAGCGAATAACTTGAGAGTATTTTCAAGAGGCCT
1 GGTGGCAGCCTGTGGTAAGGGGTACACGACTGAGCGAATAACTTGAGAGTATTTTCAAGAGGCCT
103173000 TCTAGAA
66 TCTAGAA
* * *
103173007 GGTGGCAGCCTGTGGTAAGGGGTACACGGCTGAGTGAATAACTTGGGAGTATTTTCAAGAGGCCT
1 GGTGGCAGCCTGTGGTAAGGGGTACACGACTGAGCGAATAACTTGAGAGTATTTTCAAGAGGCCT
103173072 TCTAGAA
66 TCTAGAA
103173079 G
1 G
103173080 AAGTATGTGG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.25
Consensus pattern (72 bp):
GGTGGCAGCCTGTGGTAAGGGGTACACGACTGAGCGAATAACTTGAGAGTATTTTCAAGAGGCCT
TCTAGAA
Found at i:103175863 original size:16 final size:15
Alignment explanation
Indices: 103175837--103175876 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
103175827 CTTCCATGTG
103175837 TTCTATTTCTTCCCTCT
1 TTCT-TTTCTTCCCT-T
*
103175854 TTCTTTTCTTTCCTT
1 TTCTTTTCTTCCCTT
103175869 TTCTTTTC
1 TTCTTTTC
103175877 ATCGAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.41
16 9 0.41
17 4 0.18
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.68
Consensus pattern (15 bp):
TTCTTTTCTTCCCTT
Found at i:103179216 original size:17 final size:17
Alignment explanation
Indices: 103179196--103179228 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
103179186 TTGTATTTTT
*
103179196 TTGTTTATATTATTAAG
1 TTGTTAATATTATTAAG
103179213 TTGTTAATATTATTAA
1 TTGTTAATATTATTAA
103179229 TTATTATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (17 bp):
TTGTTAATATTATTAAG
Found at i:103180601 original size:17 final size:17
Alignment explanation
Indices: 103180575--103180610 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
103180565 ACGTTTTCAT
*
103180575 ATTCTGTCCTAAAAATG
1 ATTCTCTCCTAAAAATG
103180592 ATTCTCTCCTAAAAATG
1 ATTCTCTCCTAAAAATG
103180609 AT
1 AT
103180611 CTAAAACCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (17 bp):
ATTCTCTCCTAAAAATG
Found at i:103181367 original size:11 final size:11
Alignment explanation
Indices: 103181351--103181390 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
103181341 ACTACTAGTT
103181351 TTATAATTTTA
1 TTATAATTTTA
103181362 TTATAATTTTA
1 TTATAATTTTA
* *
103181373 TTTTAAATTTTT
1 TTAT-AATTTTA
103181385 TTATAA
1 TTATAA
103181391 AATTTTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATAATTTTA
Found at i:103183034 original size:17 final size:17
Alignment explanation
Indices: 103183004--103183036 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
103182994 AAAAGTAATG
103183004 ATATGTAAATAAAATAA
1 ATATGTAAATAAAATAA
103183021 ATATGCTAAA-AAAATA
1 ATATG-TAAATAAAATA
103183037 TACAGTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (17 bp):
ATATGTAAATAAAATAA
Found at i:103183135 original size:22 final size:22
Alignment explanation
Indices: 103183084--103183144 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
103183074 ATAAGTAAAT
* *
103183084 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
103183105 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
103183127 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
103183145 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:103183505 original size:24 final size:24
Alignment explanation
Indices: 103183478--103183529 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
103183468 TTAGTAAGTC
*
103183478 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
103183502 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
103183526 AAAT
1 AAAT
103183530 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:103185474 original size:24 final size:24
Alignment explanation
Indices: 103185447--103185498 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
103185437 TTAGTAAGTC
*
103185447 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
103185471 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
103185495 AAAT
1 AAAT
103185499 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:103185665 original size:3 final size:3
Alignment explanation
Indices: 103185657--103185781 Score: 53
Period size: 3 Copynumber: 41.7 Consensus size: 3
103185647 AAAGTAGTGC
* * *
103185657 TAA TAA TAA TAA TAA TAA TAA T-C TAT TAA GTTA TAA TGAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA T-AA TAA TAA
* * * * *
103185702 TGA TAA TGA TGA T-A TAT TAGA TAA TAA TAG TAA -AA TAA TAA GTAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA -TAA
* * * * *
103185747 CAA TAG TAG TAA TAA T-A TAT TAG TAA TATA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TA
103185782 GAGGTAGTAA
Statistics
Matches: 93, Mismatches: 19, Indels: 20
0.70 0.14 0.15
Matches are distributed among these distances:
2 9 0.10
3 72 0.77
4 12 0.13
ACGTcount: A:0.54, C:0.02, G:0.09, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:103185756 original size:24 final size:26
Alignment explanation
Indices: 103185724--103185782 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 26
103185714 TATATTAGAT
103185724 AATAATAGTAA-AATA-ATAAGTAAC
1 AATAATAGTAATAATATATAAGTAAC
* * *
103185748 AATAGTAGTAATAATATATTAGTAAT
1 AATAATAGTAATAATATATAAGTAAC
103185774 ATATAATAG
1 A-ATAATAG
103185783 AGGTAGTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 10 0.36
25 4 0.14
26 8 0.29
27 6 0.21
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (26 bp):
AATAATAGTAATAATATATAAGTAAC
Found at i:103185876 original size:16 final size:16
Alignment explanation
Indices: 103185847--103185884 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
103185837 TATACGTATG
*
103185847 AAAA-ATAATGATAGT
1 AAAATATAATAATAGT
103185862 AAAATATAATAATAGT
1 AAAATATAATAATAGT
103185878 AATAATA
1 AA-AATA
103185885 ATAGTGGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 12 0.60
17 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (16 bp):
AAAATATAATAATAGT
Found at i:103186895 original size:14 final size:12
Alignment explanation
Indices: 103186863--103186887 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103186853 TTGGGTTAGT
103186863 GTTTTGGGCTAA
1 GTTTTGGGCTAA
103186875 GTTTTGGGCTAA
1 GTTTTGGGCTAA
103186887 G
1 G
103186888 GGTTTTGGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.36, T:0.40
Consensus pattern (12 bp):
GTTTTGGGCTAA
Found at i:103188489 original size:17 final size:19
Alignment explanation
Indices: 103188463--103188504 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
103188453 TCATATTAAA
*
103188463 TAATAGAAAAAAAT-A-TT
1 TAATATAAAAAAATAACTT
*
103188480 TAATATAAAAAGATAACTT
1 TAATATAAAAAAATAACTT
103188499 TAATAT
1 TAATAT
103188505 GTTTGAGCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 12 0.57
18 1 0.05
19 8 0.38
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (19 bp):
TAATATAAAAAAATAACTT
Found at i:103189690 original size:31 final size:33
Alignment explanation
Indices: 103189624--103189690 Score: 86
Period size: 31 Copynumber: 2.1 Consensus size: 33
103189614 AAACAACAAC
* *
103189624 AATTCAACTCTTTTTTTAAAAGGTTGATGGTCA
1 AATTCAACTCTTTTTGTAAAAGGTTGATGATCA
103189657 AATTCAA-TC-TTTTGTAAAAGGTTGA-GATCCA
1 AATTCAACTCTTTTTGTAAAAGGTTGATGAT-CA
103189688 AAT
1 AAT
103189691 GTAACTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 2 0.06
31 20 0.65
32 2 0.06
33 7 0.23
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (33 bp):
AATTCAACTCTTTTTGTAAAAGGTTGATGATCA
Found at i:103203074 original size:15 final size:16
Alignment explanation
Indices: 103203037--103203074 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
103203027 TGATGATCCG
103203037 ATGATTATATATATAT
1 ATGATTATATATATAT
*
103203053 ATG-TTATATTTATAT
1 ATGATTATATATATAT
103203068 A-GATTAT
1 ATGATTAT
103203075 GCATGTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 16 0.80
16 3 0.15
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (16 bp):
ATGATTATATATATAT
Found at i:103207363 original size:52 final size:49
Alignment explanation
Indices: 103207278--103207644 Score: 440
Period size: 46 Copynumber: 7.6 Consensus size: 49
103207268 TTTGAGTACT
* **
103207278 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
103207324 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
103207376 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
103207422 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
103207468 TCTGATCAAGTGACAAGTGTAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA---TAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
103207520 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
103207572 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
103207618 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
103207645 GCTACACTTA
Statistics
Matches: 291, Mismatches: 14, Indels: 32
0.86 0.04 0.09
Matches are distributed among these distances:
46 155 0.53
48 1 0.00
49 2 0.01
50 3 0.01
52 130 0.45
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:103207398 original size:98 final size:97
Alignment explanation
Indices: 103207278--103207644 Score: 501
Period size: 98 Copynumber: 3.7 Consensus size: 97
103207268 TTTGAGTACT
* *
103207278 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
103207343 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
103207376 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
103207436 AAAGTGATAAGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
103207468 TCTGATCAAGTGACAAGTGTAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A---TAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
103207533 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * * *
103207572 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
103207637 GATAAGTG
65 GA-AAGTG
103207645 GCTACACTTA
Statistics
Matches: 240, Mismatches: 15, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
92 41 0.17
95 1 0.00
98 146 0.61
99 10 0.04
101 1 0.00
104 41 0.17
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:103207652 original size:37 final size:37
Alignment explanation
Indices: 103207608--103207753 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
103207598 GATAGCTTTA
*
103207608 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
103207645 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
103207682 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
103207719 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
103207754 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:103216029 original size:21 final size:21
Alignment explanation
Indices: 103216000--103216051 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
103215990 CCTTAATTTG
* *
103216000 TTTTTTTTATGTT-TATACTA
1 TTTTATTTATGTTGTAGACTA
*
103216020 TTTTCATTTAT-TTGTAGAGTA
1 TTTT-ATTTATGTTGTAGACTA
103216041 TTTTATTTATG
1 TTTTATTTATG
103216052 AATATTGTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.21, C:0.04, G:0.10, T:0.65
Consensus pattern (21 bp):
TTTTATTTATGTTGTAGACTA
Found at i:103219075 original size:127 final size:128
Alignment explanation
Indices: 103218884--103219202 Score: 469
Period size: 127 Copynumber: 2.5 Consensus size: 128
103218874 TATTTAGCCC
* * * *
103218884 AACGAAAAACCGAAACCCAGCACGGTAGGGCACGATTCCTCGAATTTCTAAACATTGAACATTGC
1 AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGC
* * *
103218949 CTTGCTTTAGAATTTAGAAAACACGAGTGAAATTCTAAAGGAATATTCTATTATTTTGAACAA
66 CTTGCTTTAGAATTTAGAAAACACGAGTGAAATTCTAAAGGAATATTCGATCATTTTGAAAAA
* * * *
103219012 ACCG-GAAATCGAAACCCAACACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAATATTGC
1 AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGC
* * *
103219076 CTTGTTTTAGAATTTGGAAAACACGAGTGAAATTCTAAAGGAATGTTCGATCATTTTGAAAAA
66 CTTGCTTTAGAATTTAGAAAACACGAGTGAAATTCTAAAGGAATATTCGATCATTTTGAAAAA
* * **
103219139 AACGAGAAATCGAAACCCAGCACGATAGGGCACGGTTTCTCGAATTTCCAAACATCAAACATTG
1 AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTG
103219203 GCTTCGTTTT
Statistics
Matches: 168, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
127 113 0.67
128 55 0.33
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.25
Consensus pattern (128 bp):
AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGC
CTTGCTTTAGAATTTAGAAAACACGAGTGAAATTCTAAAGGAATATTCGATCATTTTGAAAAA
Found at i:103221226 original size:7 final size:6
Alignment explanation
Indices: 103221197--103221268 Score: 51
Period size: 7 Copynumber: 11.5 Consensus size: 6
103221187 CATAATTTAC
* *
103221197 AAATAA AAATAT ATA-AT -AATAT AAATTAT ATAATAT AAAAATAT ATAATAT
1 AAATAT AAATAT AAATAT AAATAT AAA-TAT A-AATAT --AAATAT A-AATAT
103221248 AAAGTAT AAATAT -AATAT AAA
1 AAA-TAT AAATAT AAATAT AAA
103221269 AAATATTATA
Statistics
Matches: 54, Mismatches: 3, Indels: 18
0.72 0.04 0.24
Matches are distributed among these distances:
4 1 0.02
5 9 0.17
6 17 0.31
7 19 0.35
8 7 0.13
9 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (6 bp):
AAATAT
Found at i:103221229 original size:9 final size:9
Alignment explanation
Indices: 103221199--103221283 Score: 52
Period size: 9 Copynumber: 9.3 Consensus size: 9
103221189 TAATTTACAA
103221199 ATAAA-AAT
1 ATAAATAAT
103221207 ATATAATAAT
1 ATA-AATAAT
*
103221217 ATAAATTAT
1 ATAAATAAT
*
103221226 ATAATATAAAA
1 ATAA-AT-AAT
*
103221237 ATATATAAT
1 ATAAATAAT
103221246 ATAAAGT-AT
1 ATAAA-TAAT
103221255 A-AATATAAT
1 ATAA-ATAAT
*
103221264 ATAAAAAAT
1 ATAAATAAT
*
103221273 AT-TATAAT
1 ATAAATAAT
103221281 ATA
1 ATA
103221284 TAGTAAAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
8 12 0.20
9 30 0.51
10 13 0.22
11 4 0.07
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (9 bp):
ATAAATAAT
Found at i:103221232 original size:5 final size:5
Alignment explanation
Indices: 103221212--103221340 Score: 67
Period size: 5 Copynumber: 25.4 Consensus size: 5
103221202 AAAATATATA
* *
103221212 ATAAT ATAA- ATTAT ATAAT ATAA- AAATAT ATAAT ATAAAGT ATAAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT AT-AA-T AT-AAT
* *
103221259 ATAAT ATAA- A-AA- ATATT ATAAT ATATAGT AAAAT ATAAT ATGTAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATA-A-T ATAAT ATAAT A--TAAT
*
103221305 A-AAT AT-AT ATGAAT AGAAT ATAAT GA-AAT ATAAT AT
1 ATAAT ATAAT AT-AAT ATAAT ATAAT -ATAAT ATAAT AT
103221341 GATAAGGGAT
Statistics
Matches: 98, Mismatches: 10, Indels: 32
0.70 0.07 0.23
Matches are distributed among these distances:
3 3 0.03
4 16 0.16
5 52 0.53
6 13 0.13
7 14 0.14
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (5 bp):
ATAAT
Found at i:103221238 original size:32 final size:34
Alignment explanation
Indices: 103221199--103221313 Score: 116
Period size: 32 Copynumber: 3.4 Consensus size: 34
103221189 TAATTTACAA
*
103221199 ATAAAAATATATAATAATATAA-AT-TATATAAT
1 ATAAAAATATATAATAATATAAGATAAATATAAT
103221231 ATAAAAATATATAAT-ATA-AAGTATAAATATAAT
1 ATAAAAATATATAATAATATAAG-ATAAATATAAT
*
103221264 ATAAAAA-ATATTATAATATATAG-TAAAATATAAT
1 ATAAAAATATATAATAATATA-AGAT-AAATATAAT
103221298 ATGTAATAAATATATA
1 A--TAA-AAATATATA
103221314 TGAATAGAAT
Statistics
Matches: 69, Mismatches: 3, Indels: 16
0.78 0.03 0.18
Matches are distributed among these distances:
30 2 0.03
31 3 0.04
32 23 0.33
33 18 0.26
34 11 0.16
35 2 0.03
36 3 0.04
37 3 0.04
38 4 0.06
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (34 bp):
ATAAAAATATATAATAATATAAGATAAATATAAT
Found at i:103221239 original size:38 final size:33
Alignment explanation
Indices: 103221188--103221270 Score: 76
Period size: 33 Copynumber: 2.4 Consensus size: 33
103221178 AGTGTATAAC
* *
103221188 ATAATTTACAAATAAAAATATATAATAATATAAATTAT
1 ATAATATAAAAATAAAAA-ATATAA-AATAT-AA--AT
* * *
103221226 ATAATATAAAAATATATAATATAAAGTATAAAT
1 ATAATATAAAAATAAAAAATATAAAATATAAAT
103221259 ATAATATAAAAA
1 ATAATATAAAAA
103221271 ATATTATAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
33 14 0.35
35 2 0.05
36 4 0.10
37 6 0.15
38 14 0.35
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (33 bp):
ATAATATAAAAATAAAAAATATAAAATATAAAT
Found at i:103221248 original size:22 final size:22
Alignment explanation
Indices: 103221199--103221336 Score: 70
Period size: 22 Copynumber: 6.0 Consensus size: 22
103221189 TAATTTACAA
*
103221199 ATAAAA-AT-ATATAATAATAT
1 ATAAAATATAATATAAAAATAT
*
103221219 A-AATTATATAATATAAAAATAT
1 ATAA-AATATAATATAAAAATAT
* *
103221241 ATAATATA-AAGTATAAATATAAT
1 ATAAAATATAA-TATAAAAAT-AT
* * *
103221264 ATAAAAAATATTAT-AATATAT
1 ATAAAATATAATATAAAAATAT
103221285 AGTAAAATATAATATGTAATAAATAT
1 A-TAAAATATAATA--TAA-AAATAT
* *
103221311 ATATGAATAGAATATAATGAAATAT
1 ATA-AAATATAATATAA--AAATAT
103221336 A
1 A
103221337 ATATGATAAG
Statistics
Matches: 92, Mismatches: 12, Indels: 23
0.72 0.09 0.18
Matches are distributed among these distances:
19 2 0.02
20 2 0.02
21 7 0.08
22 39 0.42
23 13 0.14
24 5 0.05
25 10 0.11
26 14 0.15
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (22 bp):
ATAAAATATAATATAAAAATAT
Found at i:103221249 original size:20 final size:20
Alignment explanation
Indices: 103221199--103221296 Score: 70
Period size: 20 Copynumber: 5.2 Consensus size: 20
103221189 TAATTTACAA
103221199 ATAAAAATATATAAT--AAT
1 ATAAAAATATATAATAAAAT
103221217 AT--AAAT-TAT-AT--AAT
1 ATAAAAATATATAATAAAAT
103221231 ATAAAAATATATAATATAAAGT
1 ATAAAAATATATAATA-AAA-T
*
103221253 ATAAATATAATATAA-AAAAT
1 ATAAAAAT-ATATAATAAAAT
* * *
103221273 ATTATAATATATAGTAAAAT
1 ATAAAAATATATAATAAAAT
103221293 ATAA
1 ATAA
103221297 TATGTAATAA
Statistics
Matches: 64, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
14 7 0.11
15 3 0.05
16 8 0.12
17 3 0.05
18 4 0.06
19 5 0.08
20 14 0.22
21 5 0.08
22 9 0.14
23 6 0.09
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (20 bp):
ATAAAAATATATAATAAAAT
Found at i:103221313 original size:52 final size:50
Alignment explanation
Indices: 103221203--103221313 Score: 113
Period size: 50 Copynumber: 2.2 Consensus size: 50
103221193 TTACAAATAA
* *
103221203 AAATATATAATAATATAAATTATATAATATAAAAATATATAATATAAAGT
1 AAATATATAATAATAAAAAATATATAATATAAAAATATATAATATAAAGT
*
103221253 ATAA-ATATAAT-ATAAAAAATATTATAATATATAGTAAA-ATATAATATGTAA-T
1 A-AATATATAATAATAAAAAATA-TATAATATA-A--AAATATATAATAT-AAAGT
103221305 AAATATATA
1 AAATATATA
103221314 TGAATAGAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
49 8 0.16
50 17 0.33
51 5 0.10
52 16 0.31
53 5 0.10
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (50 bp):
AAATATATAATAATAAAAAATATATAATATAAAAATATATAATATAAAGT
Found at i:103221416 original size:34 final size:33
Alignment explanation
Indices: 103221368--103221433 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
103221358 ATAATAGTAA
*
103221368 TAACATAATAAGTATTCTACATATAAAA-ATATAG
1 TAACATAATAAGTA-TATA-ATATAAAACATATAG
103221402 TAACATAA-ATAGTATATAATATAAAACATATA
1 TAACATAATA-AGTATATAATATAAAACATATA
103221434 AAAAAACAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
32 8 0.28
33 9 0.31
34 12 0.41
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.32
Consensus pattern (33 bp):
TAACATAATAAGTATATAATATAAAACATATAG
Found at i:103221467 original size:12 final size:12
Alignment explanation
Indices: 103221444--103221487 Score: 79
Period size: 12 Copynumber: 3.6 Consensus size: 12
103221434 AAAAAACAGG
103221444 ATAAATATATATA
1 ATAAA-ATATATA
103221457 ATAAAATATATA
1 ATAAAATATATA
103221469 ATAAAATATATA
1 ATAAAATATATA
103221481 ATAAAAT
1 ATAAAAT
103221488 TTTTTTTACA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 26 0.84
13 5 0.16
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
ATAAAATATATA
Found at i:103226144 original size:9 final size:8
Alignment explanation
Indices: 103226109--103226144 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
103226099 TTATTTAATT
103226109 TTAAAATA
1 TTAAAATA
103226117 TTAAAATA
1 TTAAAATA
*
103226125 ATAAAATA
1 TTAAAATA
103226133 TTAAGAATA
1 TTAA-AATA
103226142 TTA
1 TTA
103226145 TTTAAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 18 0.72
9 7 0.28
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (8 bp):
TTAAAATA
Found at i:103226161 original size:68 final size:70
Alignment explanation
Indices: 103226060--103226192 Score: 170
Period size: 68 Copynumber: 1.9 Consensus size: 70
103226050 ATATTTATGT
103226060 TATTAAAATATTTATTATAAAATATTTAAAATTA-TATTATTAT-TTAATTTTAAAATATTAAAA
1 TATTAAAATATTTATTATAAAATATTTAAAATTACTATTA--ATGTTAATTTT-AAATATTAAAA
103226123 TAATAAAA
63 TAATAAAA
* *
103226131 TATTAAGAATA-TTATT-T-AAA-ATTTAAAATTACTATTAATGTTAATTTTTATTATTAAAATA
1 TATTAA-AATATTTATTATAAAATATTTAAAATTACTATTAATGTTAATTTTAAATATTAAAATA
103226192 A
65 A
103226193 AATTATAATG
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
67 14 0.25
68 19 0.33
69 8 0.14
70 1 0.02
71 11 0.19
72 4 0.07
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (70 bp):
TATTAAAATATTTATTATAAAATATTTAAAATTACTATTAATGTTAATTTTAAATATTAAAATAA
TAAAA
Found at i:103230185 original size:13 final size:13
Alignment explanation
Indices: 103230169--103230212 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
103230159 CTTCAATATA
103230169 TTTTCATAATAATT
1 TTTTCATAATAA-T
*
103230183 TTTTTATAAT-AT
1 TTTTCATAATAAT
103230195 ATTTTCATAATAAT
1 -TTTTCATAATAAT
103230209 TTTT
1 TTTT
103230213 TTAATCTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 1 0.04
13 14 0.54
14 11 0.42
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTTCATAATAAT
Found at i:103230191 original size:14 final size:14
Alignment explanation
Indices: 103230169--103230213 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
103230159 CTTCAATATA
103230169 TTTTCATAATAATT
1 TTTTCATAATAATT
* *
103230183 TTTTTATAAT-ATA
1 TTTTCATAATAATT
103230196 TTTTCATAATAATT
1 TTTTCATAATAATT
103230210 TTTT
1 TTTT
103230214 TAATCTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (14 bp):
TTTTCATAATAATT
Found at i:103230201 original size:27 final size:27
Alignment explanation
Indices: 103230163--103230215 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
103230153 ACCGATCTTC
103230163 AATATATTTTCATAATAATTTTTTTAT
1 AATATATTTTCATAATAATTTTTTTAT
103230190 AATATATTTTCATAATAATTTTTTTA
1 AATATATTTTCATAATAATTTTTTTA
103230216 ATCTTTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (27 bp):
AATATATTTTCATAATAATTTTTTTAT
Found at i:103230775 original size:19 final size:19
Alignment explanation
Indices: 103230751--103230788 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
103230741 TATCGTCTAA
*
103230751 ATGTCTTCATGGCTTGCTT
1 ATGTCTTCATAGCTTGCTT
103230770 ATGTCTTCATAGCTTGCTT
1 ATGTCTTCATAGCTTGCTT
103230789 CAAGTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.13, C:0.21, G:0.18, T:0.47
Consensus pattern (19 bp):
ATGTCTTCATAGCTTGCTT
Found at i:103233621 original size:21 final size:21
Alignment explanation
Indices: 103233595--103233635 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
103233585 ATCTGCTCAA
* *
103233595 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
103233616 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
103233636 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:103237411 original size:15 final size:16
Alignment explanation
Indices: 103237391--103237420 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
103237381 CTATTAAAAA
103237391 AAATTA-AATAAAGTC
1 AAATTAGAATAAAGTC
103237406 AAATTAGAATAAAGT
1 AAATTAGAATAAAGT
103237421 TAACATTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (16 bp):
AAATTAGAATAAAGTC
Found at i:103239143 original size:94 final size:96
Alignment explanation
Indices: 103239040--103239228 Score: 283
Period size: 96 Copynumber: 2.0 Consensus size: 96
103239030 ATTTTCAGTG
* *
103239040 ACTGAATTTGGACTATTTTAACGGCTAACAAAGAAA-G-AGAAAAAAAAGGTGTTGGAGAGGACG
1 ACTGAATTTGGACTAATTTAAAGGCTAACAAAGAAAGGCAGAAAAAAAAGGTGTTGGAGAGGACG
* *
103239103 GCTAGTCGAGAAAACAGAGTAGGGAGCAATA
66 GATAGTCGAGAAAACAGAGTAGGGAACAATA
* * * *
103239134 ACTGAATTTGGACTAATTTAAAGGGTAACAAAGAAAGGCGGAAAATAATGGTGTTGGAGAGGACG
1 ACTGAATTTGGACTAATTTAAAGGCTAACAAAGAAAGGCAGAAAAAAAAGGTGTTGGAGAGGACG
*
103239199 GATGGTCGAGAAAACAGAGTAGGGAACAAT
66 GATAGTCGAGAAAACAGAGTAGGGAACAAT
103239229 CTGAGTTGAG
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
94 33 0.39
95 1 0.01
96 50 0.60
ACGTcount: A:0.42, C:0.10, G:0.30, T:0.19
Consensus pattern (96 bp):
ACTGAATTTGGACTAATTTAAAGGCTAACAAAGAAAGGCAGAAAAAAAAGGTGTTGGAGAGGACG
GATAGTCGAGAAAACAGAGTAGGGAACAATA
Found at i:103255565 original size:61 final size:61
Alignment explanation
Indices: 103255418--103255537 Score: 233
Period size: 61 Copynumber: 2.0 Consensus size: 61
103255408 CATACCAATA
103255418 ACACAAAGATATACACTT-AAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGAC
1 ACACAAAGATATACACTTAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGAC
103255478 ACACAAAGATATACACTTAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGA
1 ACACAAAGATATACACTTAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGA
103255538 TAGAAACATA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
60 18 0.31
61 41 0.69
ACGTcount: A:0.54, C:0.19, G:0.07, T:0.20
Consensus pattern (61 bp):
ACACAAAGATATACACTTAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGAC
Found at i:103257976 original size:12 final size:12
Alignment explanation
Indices: 103257959--103257989 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
103257949 CCTCGCACGC
103257959 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
103257971 CCGTGTGCTAGG
1 CCGTGTGCCAGG
103257983 CCGTGTG
1 CCGTGTG
103257990 AAAACTGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.29, G:0.42, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:103261265 original size:16 final size:18
Alignment explanation
Indices: 103261230--103261267 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
103261220 ATCCTTATTT
*
103261230 AAATAAAATACAGTAGTA
1 AAATAAAATACAGAAGTA
103261248 AAATAAAATA-A-AAGTA
1 AAATAAAATACAGAAGTA
103261264 AAAT
1 AAAT
103261268 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAGAAGTA
Found at i:103262509 original size:20 final size:20
Alignment explanation
Indices: 103262466--103262516 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
103262456 ATACATATTA
* *
103262466 TCACTGTTCATGATTTCACT
1 TCACTGTTCATGACTTCACC
* *
103262486 TCACTGTTCATGGCTTGACC
1 TCACTGTTCATGACTTCACC
*
103262506 TCACTATTCAT
1 TCACTGTTCAT
103262517 AGGAATGGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.20, C:0.27, G:0.12, T:0.41
Consensus pattern (20 bp):
TCACTGTTCATGACTTCACC
Found at i:103265870 original size:25 final size:25
Alignment explanation
Indices: 103265837--103265897 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
103265827 TTGCTCTGTT
*
103265837 TGTTTTGTTCTATTATGTTCTACTC
1 TGTTCTGTTCTATTATGTTCTACTC
* * * *
103265862 TGTTCTGTTTTGTTATGTTCTGCTT
1 TGTTCTGTTCTATTATGTTCTACTC
*
103265887 TGTTCTATTCT
1 TGTTCTGTTCT
103265898 GGTTGGGTTG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.08, C:0.15, G:0.15, T:0.62
Consensus pattern (25 bp):
TGTTCTGTTCTATTATGTTCTACTC
Found at i:103267092 original size:23 final size:23
Alignment explanation
Indices: 103267066--103267117 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
103267056 TGATTTTTAA
*
103267066 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATCTAGTGATAAT
103267089 ATTTAGAATTATCTAGTGATAAT
1 ATTTAGAATTATCTAGTGATAAT
103267112 ATTTAG
1 ATTTAG
103267118 GAAAAATCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.46
Consensus pattern (23 bp):
ATTTAGAATTATCTAGTGATAAT
Found at i:103267979 original size:18 final size:18
Alignment explanation
Indices: 103267956--103268019 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
103267946 GCTTAAAAAA
*
103267956 TATTTTATTTATTCCATT
1 TATTTTATTTATTACATT
* *
103267974 TATTTTATTTTCTTAAATT
1 TATTTTA-TTTATTACATT
* *
103267993 TA-TTTATTTTTTGCATT
1 TATTTTATTTATTACATT
*
103268010 TGTTTTATTT
1 TATTTTATTT
103268020 TATTTTCCGT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
17 9 0.24
18 18 0.49
19 10 0.27
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.70
Consensus pattern (18 bp):
TATTTTATTTATTACATT
Found at i:103273154 original size:19 final size:19
Alignment explanation
Indices: 103273119--103273197 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
103273109 AGATTACAAG
*
103273119 ATCATATCTTCAAGATTGCTT
1 ATCATATC-T-AAGATTGCAT
103273140 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
103273159 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
103273176 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
103273195 ATC
1 ATC
103273198 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
20 1 0.02
21 8 0.15
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:103273161 original size:14 final size:15
Alignment explanation
Indices: 103273141--103273197 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
103273131 AGATTGCTTA
103273141 TCATATCTAAGATTG
1 TCATATCTAAGATTG
103273156 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
103273175 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
103273192 -CATATC
1 TCATATC
103273198 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:103273183 original size:36 final size:39
Alignment explanation
Indices: 103273119--103273197 Score: 128
Period size: 36 Copynumber: 2.1 Consensus size: 39
103273109 AGATTACAAG
103273119 ATCATATCTTCAAGATTGCTTATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGC-TATCATATCTAAGATTGCAT
103273159 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGCTATCATATCTAAGATTGCAT
103273195 ATC
1 ATC
103273198 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.39
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGCTATCATATCTAAGATTGCAT
Found at i:103273754 original size:87 final size:85
Alignment explanation
Indices: 103273610--103274089 Score: 245
Period size: 87 Copynumber: 5.5 Consensus size: 85
103273600 GCAATGCAGA
* *
103273610 GATGCCAAATCATCTTAGATCTGCTTCAGCGT-AAACA-CGTGAAAGCCAAATCTGCTATGTCTT
1 GATGCCAAATCATCTTGGATCTGCTTCA--GTAAAACATC-TGAAAGTCAAATCTGCTATGTCTT
103273673 CGATTTGCTCCTTGTGAACACAAG
63 CGATTTGCTCCTTGTGAA-ACAAG
* * * *
103273697 GATGCCAAATCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCAGCTATG---T--
1 GATGCCAAATCATCTTGGATCTGCTTCAGTAAAA-CATCTGAAAGTCAAATCTGCTATGTCTTCG
* **
103273757 ATCTGCT-CTCTGTCGAAA-TGG
65 ATTTGCTCCT-TGT-GAAACAAG
** ** *
103273778 AGATGCCAGGTCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCTAAAAGTCAAATCTGCTAT
1 -GATGCCAAATC----ATCTTGGATCTGC-TT-CAGTAA-AACATCTGAAAGTCAAATCTGCTAT
* * *
103273843 GTCTTCGATTTGTTCCTTGTAAATACAAA
58 GTCTTCGATTTGCTCCTTGTGAA-ACAAG
* * * * * * *
103273872 AATGCCAAATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCT-
1 GATGCCAAATCATCTTGGATCTGCTTCAGTA-AAACATCTGAAAGTCAAATCTGCTATGT-CTTC
* *
103273936 G--CT-CTCC--GTCAAA-ATAG
64 GATTTGCTCCTTGTGAAACA-AG
* ** * * **
103273953 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTATTAT
1 -GATGCCAAATC----ATCTTGGATCTGC-TT-CAGT-AAAACATCTGAAAGTCAAATCTGCTAT
* *
103274018 GTCTTCGATTTGTTCCTTGTAAACACAAG
58 GTCTTCGATTTGCTCCTTGTGAA-ACAAG
* * *
103274047 AATGCCAAATCATCTTGGATCTGATTCAATATAAACATCTGAA
1 GATGCCAAATCATCTTGGATCTGCTTCAGTA-AAACATCTGAA
103274090 GGTTAGACCT
Statistics
Matches: 287, Mismatches: 65, Indels: 82
0.66 0.15 0.19
Matches are distributed among these distances:
80 1 0.00
81 5 0.02
82 32 0.11
83 3 0.01
84 4 0.01
85 3 0.01
86 29 0.10
87 86 0.30
88 54 0.19
89 27 0.09
90 1 0.00
91 4 0.01
92 2 0.01
93 30 0.10
94 5 0.02
95 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (85 bp):
GATGCCAAATCATCTTGGATCTGCTTCAGTAAAACATCTGAAAGTCAAATCTGCTATGTCTTCGA
TTTGCTCCTTGTGAAACAAG
Done.