Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 317 of 352
Found at i:103273852 original size:175 final size:175
Alignment explanation
Indices: 103273651--103274232 Score: 896
Period size: 175 Copynumber: 3.3 Consensus size: 175
103273641 TAAACACGTG
* * * *
103273651 AAAGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
103273716 TCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCAGCTATGTATCTGCTCTCTGTCGAAATGGAG
66 TCTGCTTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
* * *
103273780 ATGCCAGGTCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCTA
130 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
* *
103273826 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAATACAAAAATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
103273891 TCTACTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCAAAATAGAGA
66 TCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGA
*
103273956 TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCG
131 TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
**
103274001 AAAGTCAAATCTATTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
103274066 TCTGATTCAATATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGA
66 TCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGA
* *
103274131 TTCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACACCCA
131 TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
* * * * *
103274176 AAAATCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAAATC
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATC
103274233 TGCTATCTTC
Statistics
Matches: 370, Mismatches: 36, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
175 367 0.99
176 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (175 bp):
AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
TCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGA
TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
Found at i:103274254 original size:44 final size:44
Alignment explanation
Indices: 103274184--103274498 Score: 239
Period size: 44 Copynumber: 7.1 Consensus size: 44
103274174 CAAAAATCAG
* *
103274184 ATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAA
1 ATCTGCTA--TCTTCGACTTGTTCCCTATAAACACAGGGATGCCAA
* * *
103274230 ATCTGCTATCTTCAACTTGTTCCCTATAAACATAGGGATGCCAT
1 ATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGATGCCAA
* *** * * * * * * *
103274274 GT-TAAAATCTTTGA-TCTGTTTCGCTGTAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCGACT-TG-TTCCCTATAAACACAGGGATGCCAA
*
103274318 ATCTGCTATCTTCGA-TCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGACT-TGTTCCCTATAAACACAGGGATGCCAA
*
103274362 ATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGATGCCAA
*** * * * * * *
103274404 ATGCTAAAATCTTCGATTTGCTTCACTGTAAGCACA-GGAGTGTCAG
1 AT-CTGCTATCTTCGACTTG-TTCCCTATAAACACAGGGA-TGCCAA
*
103274450 ATCTGCTATCTTCGATCTAT-TTCCCTATAAACACAGAGATGCCAA
1 ATCTGCTATCTTCGA-CT-TGTTCCCTATAAACACAGGGATGCCAA
103274495 ATCT
1 ATCT
103274499 TGTTTCTTTG
Statistics
Matches: 206, Mismatches: 51, Indels: 25
0.73 0.18 0.09
Matches are distributed among these distances:
42 3 0.01
43 24 0.12
44 122 0.59
45 43 0.21
46 13 0.06
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (44 bp):
ATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGATGCCAA
Found at i:103274355 original size:132 final size:132
Alignment explanation
Indices: 103274180--103274498 Score: 503
Period size: 132 Copynumber: 2.4 Consensus size: 132
103274170 CACCCAAAAA
* *
103274180 TCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAAATCTGCTATCTTCAA
1 TCAGATCTGCTA--TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAA
* * * * *
103274245 CTTGTTCCCTATAAACATAGGGATGCCATGTTAAAATCTTTGATCTGTTTCGCTGTAAGCACAGG
64 CTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCACTGTAAGCACAGG
103274310 AATG
129 AATG
*
103274314 TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAAATCTGCTATCTTCAACT
1 TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
* *
103274379 TGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATTTGCTTCACTGTAAGCACAGGAG
66 TGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
103274444 TG
131 TG
* *
103274446 TCAGATCTGCTATCTTCGATCTATTTCCCTATAAACACAGAGATGCCAAATCT
1 TCAGATCTGCTATCTTCGATCT-GTTCCCTATAAACACAGGGATGCCAAATCT
103274499 TGTTTCTTTG
Statistics
Matches: 171, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
132 132 0.77
133 27 0.16
134 12 0.07
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
TGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
TG
Found at i:103280535 original size:22 final size:21
Alignment explanation
Indices: 103280505--103280552 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
103280495 TACAAATTAA
103280505 ATCTACAAGATTACAAGATCAT
1 ATCTACAAGATTAC-AGATCAT
* * *
103280527 ATCTTCAAGATTGCATATCAT
1 ATCTACAAGATTACAGATCAT
103280548 ATCTA
1 ATCTA
103280553 AGATTGTATC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (21 bp):
ATCTACAAGATTACAGATCAT
Found at i:103280557 original size:19 final size:19
Alignment explanation
Indices: 103280522--103280581 Score: 88
Period size: 17 Copynumber: 3.2 Consensus size: 19
103280512 AGATTACAAG
103280522 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
103280543 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
103280560 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
103280579 ATC
1 ATC
103280582 CTTAAAGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
17 17 0.46
19 11 0.30
20 1 0.03
21 8 0.22
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:103282672 original size:23 final size:23
Alignment explanation
Indices: 103282646--103282697 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
103282636 TGATTTTTAA
*
103282646 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATCTAGTGATAAT
103282669 ATTTAGAATTATCTAGTGATAAT
1 ATTTAGAATTATCTAGTGATAAT
103282692 ATTTAG
1 ATTTAG
103282698 GAAAAATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.46
Consensus pattern (23 bp):
ATTTAGAATTATCTAGTGATAAT
Found at i:103282979 original size:6 final size:6
Alignment explanation
Indices: 103282968--103282996 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
103282958 AAACACCCCA
103282968 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
103282997 GCATTTCTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:103288399 original size:55 final size:53
Alignment explanation
Indices: 103288311--103288566 Score: 231
Period size: 55 Copynumber: 4.8 Consensus size: 53
103288301 CATTAGGGTT
*
103288311 CAAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGG
* * * * * *
103288366 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGG
* * * *
103288421 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGG
* * *
103288474 CAAGGATACCCTGTAAGACCATGTCAGGACATGGCAATT-GTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGG
* * *
103288524 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAG
103288567 GTACCCGTGT
Statistics
Matches: 166, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
48 1 0.01
49 36 0.22
52 7 0.04
53 36 0.22
54 14 0.08
55 68 0.41
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGG
Found at i:103288518 original size:108 final size:110
Alignment explanation
Indices: 103288319--103288519 Score: 302
Period size: 108 Copynumber: 1.8 Consensus size: 110
103288309 TTCAAGGATA
*
103288319 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
103288384 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
* * * *
103288429 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCCTGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
103288491 ACCATGTCAGGACATGGCAATTG-TAAGTT
65 ACCATGTCAAGACATGGC-ATTGATAAGTT
103288520 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
107 3 0.04
108 43 0.52
109 11 0.13
110 26 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
Found at i:103295200 original size:14 final size:14
Alignment explanation
Indices: 103295181--103295228 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 14
103295171 TGTTAATTTT
103295181 TATTATTAAAATAA
1 TATTATTAAAATAA
*
103295195 TATTATAATGTTAAATAA
1 TA-T-T-AT-TAAAATAA
103295213 TATTATTAAAATAA
1 TATTATTAAAATAA
103295227 TA
1 TA
103295229 AATTATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 11 0.39
15 3 0.11
16 2 0.07
17 3 0.11
18 9 0.32
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
TATTATTAAAATAA
Found at i:103295217 original size:32 final size:33
Alignment explanation
Indices: 103295155--103295228 Score: 100
Period size: 32 Copynumber: 2.3 Consensus size: 33
103295145 TATTTAAAAT
* **
103295155 TTAAAAT-A-ATTATTAATGTTAATTTTTATTA
1 TTAAAATAATATTATTAATGTTAAATAATATTA
103295186 TTAAAATAATATTA-TAATGTTAAATAATATTA
1 TTAAAATAATATTATTAATGTTAAATAATATTA
103295218 TTAAAATAATA
1 TTAAAATAATA
103295229 AATTATATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 7 0.18
32 27 0.71
33 4 0.11
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (33 bp):
TTAAAATAATATTATTAATGTTAAATAATATTA
Found at i:103295219 original size:21 final size:21
Alignment explanation
Indices: 103295190--103295244 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
103295180 TTATTATTAA
* **
103295190 AATAATATTATAATGTTAAAT
1 AATATTATTATAATAATAAAT
*
103295211 AATATTATTAAAATAATAAAT
1 AATATTATTATAATAATAAAT
*
103295232 TATATTAATTATA
1 AATATT-ATTATA
103295245 GGAATAATAG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 22 0.81
22 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
AATATTATTATAATAATAAAT
Found at i:103296744 original size:22 final size:21
Alignment explanation
Indices: 103296719--103296759 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
103296709 ATCTCAACCC
*
103296719 AATACATATGCATAATCAAACT
1 AATACATATCCAT-ATCAAACT
*
103296741 AATATATATCCATATCAAA
1 AATACATATCCATATCAAA
103296760 TGAGATGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.51, C:0.17, G:0.02, T:0.29
Consensus pattern (21 bp):
AATACATATCCATATCAAACT
Found at i:103310657 original size:24 final size:23
Alignment explanation
Indices: 103310622--103310666 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
103310612 AACATAGACC
*
103310622 ACAAAAACCAAACACAGAAAAAAT
1 ACAAAAACCAAAC-CACAAAAAAT
103310646 ACAACAAA-CAAACCACAAAAA
1 ACAA-AAACCAAACCACAAAAA
103310667 CCCCCACTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 9 0.47
25 3 0.16
ACGTcount: A:0.71, C:0.24, G:0.02, T:0.02
Consensus pattern (23 bp):
ACAAAAACCAAACCACAAAAAAT
Found at i:103315337 original size:28 final size:27
Alignment explanation
Indices: 103315306--103315365 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
103315296 TGTATAAAAT
*
103315306 ATATAATAA-AAATATATAAGTAAGATAA
1 ATATAATAAGAAATAT-TAAATAAGAT-A
* *
103315334 ATATTATAAGAAATATTAAATAATATA
1 ATATAATAAGAAATATTAAATAAGATA
103315361 ATATA
1 ATATA
103315366 GTATGTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
27 5 0.19
28 16 0.59
29 6 0.22
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (27 bp):
ATATAATAAGAAATATTAAATAAGATA
Found at i:103315561 original size:64 final size:61
Alignment explanation
Indices: 103315453--103315572 Score: 147
Period size: 64 Copynumber: 1.9 Consensus size: 61
103315443 AAATATGATT
*
103315453 AAATAATTAATAAAATAATAAATATACAACATATATTGAAATTTATGAATATATATATTTAC
1 AAATAATTAATAAAATAATAAATATACAACATATATTGAAATTTAT-AAAATATATATTTAC
*
103315515 AAATAATATAAATAAAATAATAAAT-TACTAA-ATATAATT-AGTATTTATAAAATATATA
1 AAATAAT-T-AATAAAATAATAAATATAC-AACATAT-ATTGA-AATTTATAAAATATATA
103315573 CATATAAGGT
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
62 7 0.14
63 18 0.35
64 26 0.51
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (61 bp):
AAATAATTAATAAAATAATAAATATACAACATATATTGAAATTTATAAAATATATATTTAC
Found at i:103318425 original size:27 final size:27
Alignment explanation
Indices: 103318387--103318447 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
103318377 AGTCTATTTA
*
103318387 ATGCACATGCCAAATGTGAATAGTATG
1 ATGCAAATGCCAAATGTGAATAGTATG
103318414 ATGCAAATGCCAAATGTGAATAGTATG
1 ATGCAAATGCCAAATGTGAATAGTATG
103318441 ATGCAAA
1 ATGCAAA
103318448 GCTCCTTTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.25
Consensus pattern (27 bp):
ATGCAAATGCCAAATGTGAATAGTATG
Found at i:103326257 original size:17 final size:19
Alignment explanation
Indices: 103326221--103326258 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
103326211 ATGCATACGT
103326221 AAAGAGTTGTGACCAATGTC
1 AAAGAGTTGTGA-CAATGTC
103326241 AAAGAGTTG-GA-AATGTC
1 AAAGAGTTGTGACAATGTC
103326258 A
1 A
103326259 CCAATAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
19 2 0.11
20 9 0.50
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (19 bp):
AAAGAGTTGTGACAATGTC
Found at i:103331222 original size:18 final size:19
Alignment explanation
Indices: 103331201--103331241 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
103331191 TCTTGCCAAA
*
103331201 AAAATAATTAAA-TATTTT
1 AAAATAATTAAATTATGTT
103331219 AAAATAATTAAATTATGTT
1 AAAATAATTAAATTATGTT
103331238 AAAA
1 AAAA
103331242 ATATGAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AAAATAATTAAATTATGTT
Found at i:103331269 original size:10 final size:10
Alignment explanation
Indices: 103331251--103331293 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
103331241 AATATGAACA
*
103331251 TTATGAATTT
1 TTATTAATTT
103331261 TTATTAATTT
1 TTATTAATTT
103331271 TATAGTTAATTT
1 T-TA-TTAATTT
*
103331283 TAATTAATTT
1 TTATTAATTT
103331293 T
1 T
103331294 GGTTATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 18 0.62
11 3 0.10
12 8 0.28
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (10 bp):
TTATTAATTT
Found at i:103333596 original size:14 final size:14
Alignment explanation
Indices: 103333579--103333605 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
103333569 ATTTAGCGAT
103333579 GTATATTTATAAAA
1 GTATATTTATAAAA
103333593 GTATATTTATAAA
1 GTATATTTATAAA
103333606 GGGAAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (14 bp):
GTATATTTATAAAA
Found at i:103334442 original size:16 final size:15
Alignment explanation
Indices: 103334404--103334446 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
103334394 AATGAAACAT
103334404 ACAAATTGAAATAAA
1 ACAAATTGAAATAAA
* *
103334419 ACTTAATTGAGATAAA
1 AC-AAATTGAAATAAA
103334435 ATCAAATTGAAA
1 A-CAAATTGAAA
103334447 GAGGGCAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
15 2 0.09
16 19 0.86
17 1 0.05
ACGTcount: A:0.58, C:0.07, G:0.09, T:0.26
Consensus pattern (15 bp):
ACAAATTGAAATAAA
Found at i:103335563 original size:14 final size:14
Alignment explanation
Indices: 103335544--103335571 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
103335534 ATTGGACTTA
103335544 ATTATTTTAGTTTT
1 ATTATTTTAGTTTT
103335558 ATTATTTTAGTTTT
1 ATTATTTTAGTTTT
103335572 TTTGTTTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.71
Consensus pattern (14 bp):
ATTATTTTAGTTTT
Found at i:103336278 original size:180 final size:179
Alignment explanation
Indices: 103335986--103336463 Score: 650
Period size: 180 Copynumber: 2.6 Consensus size: 179
103335976 ATCTTCAGTT
103335986 TGCTTCCTTGCTACCTCAGGAAGATAAGACATCAATCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 TGCTTCCTTGCTACCTCAGGAAGATAAGA-ATCAATCTTCAACCTGCTCTCTTGCTACCTCAGAG
* * * * *
103336051 AGATAAGGTTTGAGGCTCAAATCTACTCCATTGTTGATACTTAGAGATAAGATTAGCCATCTGCG
65 AGATAAGG-CTGAGGCTTAAATCTACCCCATTGTCGATACATAGAGATAAGATTAGCCATCTGCG
* * *
103336116 AAGATCTACTCCGCTGCAACTTTAGGGAGATAAAATCTTCAATTCATAATC
129 AAGATCTACTCCGCTGCAACTTCAGGAAGATAAAATCTTCAATTCACAATC
* * * * **
103336167 TGCTTCCTTGCTACCTTAGGAAGATAAGATTTACTCTTCAACCTGCTCTCTTATTACCTCAGAGA
1 TGCTTCCTTGCTACCTCAGGAAGATAAGAATCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGA
* * *
103336232 GATAAGGCTAGTGGCTTAAATCTTCCCCATTGCCGATACATAGAGATAAGATTAGCCATCTGCGA
66 GATAAGGCT-GAGGCTTAAATCTACCCCATTGTCGATACATAGAGATAAGATTAGCCATCTGCGA
* * * * *
103336297 AGATCTGCTCCGTTGCAACTTCAGGAAGATAAAATCTTCAATTCCCAGTT
130 AGATCTACTCCGCTGCAACTTCAGGAAGATAAAATCTTCAATTCACAATC
* * * * *
103336347 TGCTTCCTTACTACCTCAGGGAGATAAGACTCATTCTTCAACCTGCTTTCTTGCTACCTCAGAGA
1 TGCTTCCTTGCTACCTCAGGAAGATAAGAATCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGA
* * *
103336412 GATAAGGCCTGAGGCTTAAATCTGCCCTATTGTCGATACATGGAGATAAGAT
66 GATAAGG-CTGAGGCTTAAATCTACCCCATTGTCGATACATAGAGATAAGAT
103336464 CTGCCTCCAA
Statistics
Matches: 259, Mismatches: 36, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
179 1 0.00
180 228 0.88
181 30 0.12
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (179 bp):
TGCTTCCTTGCTACCTCAGGAAGATAAGAATCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGA
GATAAGGCTGAGGCTTAAATCTACCCCATTGTCGATACATAGAGATAAGATTAGCCATCTGCGAA
GATCTACTCCGCTGCAACTTCAGGAAGATAAAATCTTCAATTCACAATC
Found at i:103336901 original size:64 final size:64
Alignment explanation
Indices: 103336800--103337055 Score: 336
Period size: 64 Copynumber: 4.0 Consensus size: 64
103336790 TTCATGTATC
* *
103336800 ATGCTTATGTCAACTAATTAGGATGTTATGATCAAAATGAATCAAATACTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTG
* * * * *
103336864 ATGCTTATGACACATAATTAGGATGCTATGATCAAAATTAACCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTG
** * * *
103336928 ATG-TTGATGTCAAATAATTAGGCCGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTA
1 ATGCTT-ATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTG
* * * *
103336992 ATGCTAATGTCAAATAATTAGGATGCTATTG-TCGAAATGAATCAAATACACCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTA-TGATCAAAATGAATCAAATACTCCTAACTAGATGTG
103337056 TTATGAATGA
Statistics
Matches: 167, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
63 2 0.01
64 162 0.97
65 3 0.02
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTG
Found at i:103338191 original size:7 final size:7
Alignment explanation
Indices: 103338179--103338205 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
103338169 CTTTCTTATT
103338179 TTTTTTA
1 TTTTTTA
103338186 TTTTTTA
1 TTTTTTA
103338193 TTTTTTA
1 TTTTTTA
103338200 TTTTTT
1 TTTTTT
103338206 TATTAATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTA
Found at i:103338191 original size:8 final size:8
Alignment explanation
Indices: 103338178--103338229 Score: 54
Period size: 8 Copynumber: 6.5 Consensus size: 8
103338168 TCTTTCTTAT
103338178 TTTTTTTA
1 TTTTTTTA
103338186 -TTTTTTA
1 TTTTTTTA
103338193 -TTTTTTA
1 TTTTTTTA
103338200 TTTTTTTA
1 TTTTTTTA
* *
103338208 TTAATTTCTC
1 TT--TTTTTA
103338218 TTTTTTTA
1 TTTTTTTA
103338226 TTTT
1 TTTT
103338230 GATTTTTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
7 14 0.38
8 17 0.46
10 6 0.16
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTTTA
Found at i:103338214 original size:26 final size:24
Alignment explanation
Indices: 103338177--103338229 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 24
103338167 TTCTTTCTTA
*
103338177 TTTTTTTTATTT-TTTATTTTTTAT
1 TTTTTTTTATTTCTCT-TTTTTTAT
103338201 TTTTTTATTAATTTCTCTTTTTTTAT
1 TTTTTT-TT-ATTTCTCTTTTTTTAT
103338227 TTT
1 TTT
103338230 GATTTTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 6 0.24
25 2 0.08
26 15 0.60
27 2 0.08
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (24 bp):
TTTTTTTTATTTCTCTTTTTTTAT
Found at i:103338221 original size:23 final size:21
Alignment explanation
Indices: 103338165--103338229 Score: 51
Period size: 23 Copynumber: 2.9 Consensus size: 21
103338155 TGACCTCTCC
103338165 ATTTCTTTCTTATTTTTTTTATT
1 ATTTCTTT-TTA-TTTTTTTATT
* *
103338188 TTTTATTTTTTATTTTTTTATT
1 ATTT-CTTTTTATTTTTTTATT
103338210 AATTTCTCTTTT-TTTATTTT
1 -ATTTCT-TTTTATTT-TTTT
103338230 GATTTTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
22 14 0.41
23 17 0.50
24 3 0.09
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (21 bp):
ATTTCTTTTTATTTTTTTATT
Found at i:103343356 original size:14 final size:14
Alignment explanation
Indices: 103343339--103343365 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
103343329 ATTTAGCGAT
103343339 GTATATTTATAAAA
1 GTATATTTATAAAA
103343353 GTATATTTATAAA
1 GTATATTTATAAA
103343366 GGGAAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (14 bp):
GTATATTTATAAAA
Found at i:103344201 original size:16 final size:15
Alignment explanation
Indices: 103344163--103344205 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
103344153 AATGAAACAT
103344163 ACAAATTGAAATAAA
1 ACAAATTGAAATAAA
* *
103344178 ACTTAATTGAGATAAA
1 AC-AAATTGAAATAAA
103344194 ATCAAATTGAAA
1 A-CAAATTGAAA
103344206 GGGGGCAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
15 2 0.09
16 19 0.86
17 1 0.05
ACGTcount: A:0.58, C:0.07, G:0.09, T:0.26
Consensus pattern (15 bp):
ACAAATTGAAATAAA
Found at i:103345328 original size:14 final size:14
Alignment explanation
Indices: 103345309--103345336 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
103345299 ATTGGACTTA
103345309 ATTATTTTAGTTTT
1 ATTATTTTAGTTTT
103345323 ATTATTTTAGTTTT
1 ATTATTTTAGTTTT
103345337 TTTTTAGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.71
Consensus pattern (14 bp):
ATTATTTTAGTTTT
Found at i:103351365 original size:44 final size:44
Alignment explanation
Indices: 103351302--103351775 Score: 590
Period size: 44 Copynumber: 10.8 Consensus size: 44
103351292 GGGACAATGT
103351302 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
1 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
* * *
103351346 AGATCAAAGGTAGCAGATTTGGCGTCTCTGTATTGACGGAGGCC
1 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
* * *
103351390 AGATCGAAGATACCAGATTTGGCGTTTCTGTATTGACAGAGGGC
1 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
* * * * *
103351434 AGATCGAAGATTGCAGATTTGGCGTCTTTGTATTGGCAAAGGGC
1 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
*
103351478 ATATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
1 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
* * * *
103351522 AGATCGAAGATAGAAAATTTGGCGTCTCTGTATTGACGGAGGGC
1 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
* * * ***
103351566 AGATCGAAGATAGCAAATTTGGCATCTCTGTATTGACAGAAAAC
1 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
* * * * *
103351610 AGATCGAGGA-GGACAGATTTTGCGTCTCTGTATTGACAGAGAGC
1 AGATCAAAGATAG-CAGATTTGGCGTCTCTGTATTGACAGAGGGC
* *
103351654 AAATAAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
1 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
* * * * * **
103351698 AGATCGAAGATAGCAGATTTGGAGTCTCCGTATTGATAAAGATC
1 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
* *
103351742 AGATCAAAAATAGCAGATTTGGCATCTCTGTATT
1 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATT
103351776 AGACGGGGAG
Statistics
Matches: 368, Mismatches: 60, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
43 1 0.00
44 366 0.99
45 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (44 bp):
AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGACAGAGGGC
Found at i:103353109 original size:44 final size:41
Alignment explanation
Indices: 103353050--103353148 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 41
103353040 ATGTAAATAG
*
103353050 TATATATATTATTTATATATTATCTATCATATTGTT-TATATTAT
1 TATATATATTATTTATAAATT-T-TATCATA-TGTTATATATT-T
* * *
103353094 TATATATTTTGTTTATAAATTTTATTATATGTTATATATTT
1 TATATATATTATTTATAAATTTTATCATATGTTATATATTT
103353135 TACTATATATTATT
1 TA-TATATATTATT
103353149 CCTTACATTA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
41 7 0.15
42 21 0.45
43 1 0.02
44 18 0.38
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (41 bp):
TATATATATTATTTATAAATTTTATCATATGTTATATATTT
Found at i:103353134 original size:19 final size:19
Alignment explanation
Indices: 103353106--103353147 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
103353096 TATATTTTGT
* *
103353106 TTATAAATTTTATTATATG
1 TTATAAATTTTACTATATA
*
103353125 TTATATATTTTACTATATA
1 TTATAAATTTTACTATATA
103353144 TTAT
1 TTAT
103353148 TCCTTACATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (19 bp):
TTATAAATTTTACTATATA
Found at i:103353143 original size:21 final size:20
Alignment explanation
Indices: 103353052--103353144 Score: 68
Period size: 21 Copynumber: 4.5 Consensus size: 20
103353042 GTAAATAGTA
103353052 TATATATTAT-TTATATATTAT
1 TATATA-TATGTTATATATT-T
103353073 CTATCATAT-TGTT-TATATTAT
1 -TAT-ATATATGTTATATATT-T
* *
103353094 TATATATTTTGTTTATAAATTT
1 TATATA-TATG-TTATATATTT
103353116 TAT-TATATGTTATATATTT
1 TATATATATGTTATATATTT
103353135 TACTATATAT
1 TA-TATATAT
103353145 TATTCCTTAC
Statistics
Matches: 60, Mismatches: 3, Indels: 17
0.75 0.04 0.21
Matches are distributed among these distances:
19 14 0.23
20 8 0.13
21 18 0.30
22 12 0.20
23 8 0.13
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (20 bp):
TATATATATGTTATATATTT
Found at i:103353368 original size:20 final size:18
Alignment explanation
Indices: 103353337--103353399 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 18
103353327 ACATTATTAT
* *
103353337 TTTTATAAATATATTAAG
1 TTTTATATATATAATAAG
*
103353355 TTATTATATCATATAATATG
1 TT-TTATAT-ATATAATAAG
*
103353375 TTTTATATATATTAATCA-
1 TTTTATATATA-TAATAAG
103353393 TTTTATA
1 TTTTATA
103353400 AAAAGGTTCT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
18 12 0.32
19 15 0.41
20 10 0.27
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTTATATATATAATAAG
Found at i:103353519 original size:19 final size:19
Alignment explanation
Indices: 103353470--103353527 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 19
103353460 ATTTTTTGAC
*
103353470 TTATATTTTTTA--TATGT
1 TTATATTTTTTATTTATTT
*
103353487 TCATAATTTGTTTATTTATTT
1 TTAT-ATTT-TTTATTTATTT
103353508 TTATATTTTTTATTTTATTT
1 TTATATTTTTTA-TTTATTT
103353528 AGTATTGTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 3 0.09
18 4 0.12
19 8 0.24
20 11 0.33
21 7 0.21
ACGTcount: A:0.22, C:0.02, G:0.03, T:0.72
Consensus pattern (19 bp):
TTATATTTTTTATTTATTT
Found at i:103353533 original size:19 final size:20
Alignment explanation
Indices: 103353478--103353533 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 20
103353468 ACTTATATTT
103353478 TTTATATGTTCATAATTTGTTTA
1 TTTATAT-TT-AT-ATTTGTTTA
*
103353501 TTTATTTTTATATTT-TTTA
1 TTTATATTTATATTTGTTTA
103353520 TTT-TATTTAGTATT
1 TTTATATTTA-TATT
103353534 GTTATAGTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 5 0.17
19 11 0.37
20 4 0.13
21 2 0.07
22 2 0.07
23 6 0.20
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTATATTTATATTTGTTTA
Found at i:103354417 original size:3 final size:3
Alignment explanation
Indices: 103354409--103354433 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
103354399 GGGTTTCGAC
103354409 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
103354434 GAAATAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:103355748 original size:44 final size:44
Alignment explanation
Indices: 103355700--103355815 Score: 151
Period size: 44 Copynumber: 2.6 Consensus size: 44
103355690 CGTATTTGAT
** * *
103355700 CTGCTCCACTACTAATTAGGGAAATAAGATATGTAATCATCAGC
1 CTGCTCCACTACTGCTTAGGGAGATAAGATATGCAATCATCAGC
* * *
103355744 CTGCTTCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGC
1 CTGCTCCACTACTGCTTAGGGAGATAAGATATGCAATCATCAGC
**
103355788 CTATTCCACTACTGCTTAGGGAGATAAG
1 CTGCTCCACTACTGCTTAGGGAGATAAG
103355816 GCTAGTGGCT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (44 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATATGCAATCATCAGC
Found at i:103355769 original size:176 final size:176
Alignment explanation
Indices: 103355568--103355947 Score: 566
Period size: 176 Copynumber: 2.2 Consensus size: 176
103355558 CATCTTGGAT
* * * *
103355568 CTGCTCCACTACTGCTTAAGGAGATAAGATCTTCAATCATCAGCCCGCTCCACTACTGCCTAGGG
1 CTGCTTCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAGCCCACTCCACTACTGCCTAGGG
* * * *
103355633 AGATAAGGCTAGTGGTTTAAATCTGCTCTATTG-CTGCTACATGGAGATAAGATTCGCCGTATTT
66 AGATAAGGCTAGTGGCTTAAATCTACTCTATTGTC-ACTACATGGAGATAAGATTCGCCATATTT
*
103355697 GATCTGCTCCACTACTAATTAGGGAAATAAGATATGTAATCATCAGC
130 GATCTGCTCCACTACTAATTAGGGAAATAAGATATGCAATCATCAGC
* * * *
103355744 CTGCTTCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTATTCCACTACTGCTTAGGG
1 CTGCTTCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAGCCCACTCCACTACTGCCTAGGG
*
103355809 AGATAAGGCTAGTGGCTTAAATCTACTCTATTGTCACTACATGGAGATAAGATTCGCCATCTTTG
66 AGATAAGGCTAGTGGCTTAAATCTACTCTATTGTCACTACATGGAGATAAGATTCGCCATATTTG
* * * *
103355874 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTCAGC
131 ATCTGCTCCACTACTAATTAGGGAAATAAGATATGCAATCATCAGC
103355920 CTG-TTCCACTACTGCTTAGGGAGATAAG
1 CTGCTT-CACTACTGCTTAGGGAGATAAG
103355948 GCTGGTGGCT
Statistics
Matches: 184, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
175 2 0.01
176 181 0.98
177 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (176 bp):
CTGCTTCACTACTGCTTAGGGAGATAAGATCTGCAATCATCAGCCCACTCCACTACTGCCTAGGG
AGATAAGGCTAGTGGCTTAAATCTACTCTATTGTCACTACATGGAGATAAGATTCGCCATATTTG
ATCTGCTCCACTACTAATTAGGGAAATAAGATATGCAATCATCAGC
Found at i:103355811 original size:132 final size:131
Alignment explanation
Indices: 103355744--103356436 Score: 1001
Period size: 132 Copynumber: 5.3 Consensus size: 131
103355734 AATCATCAGC
* *
103355744 CTGCTTCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTATTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * * * * *
103355809 AGATAAGGCTAGTGGCTTAAATCTACTCTATTG-TCACTACATGGAGATAAGATTCGCCATCTTT
66 AGATAAGGCTGGTGGATTAAATCTGCTCCATTGCT-ACTACATGGAGATAAGATT-GTCATCTTC
103355873 GAT
129 GAT
*
103355876 CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * ** *
103355941 AGATAAGGCTGGTGGCTTAAATCTGCTCCATTGCCACTACATGGAGATAAGATTCACCGTCTTCG
66 AGATAAGGCTGGTGGATTAAATCTGCTCCATTGCTACTACATGGAGATAAGATT-GTCATCTTCG
103356006 AT
130 AT
* *
103356008 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTATTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* *
103356073 AAATAAGGCTGGTGGATTAAATCTGCTCCATTGCTACTACATGGAGATAAGATTTGTCGTCTTCG
66 AGATAAGGCTGGTGGATTAAATCTGCTCCATTGCTACTACATGGAGATAAGA-TTGTCATCTTCG
103356138 AT
130 AT
* * *
103356140 CCGCTCCACTACTGCTTAGGGAGATAAGATATGCAATTTTCAGCCTGTTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
**
103356205 AGATAAGGCTGGTGGATTAAATCTGCTCCATTGCCCCTACATGGAGATAAGATTCGTCATCTTCG
66 AGATAAGGCTGGTGGATTAAATCTGCTCCATTGCTACTACATGGAGATAAGATT-GTCATCTTCG
103356270 AT
130 AT
* *
103356272 CTGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTCAACCTGTTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
* * * * * * * *
103356337 AGATAAGGCTAGTGGCTTAAATCTGCTTCATTGCTGCTACATGGAGATAATATTCATCGTCTTTG
66 AGATAAGGCTGGTGGATTAAATCTGCTCCATTGCTACTACATGGAGATAAGATT-GTCATCTTCG
103356402 AT
130 AT
* * *
103356404 CTGCTCCACTATTGCTTAGCGAGATAATATCTG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTG
103356437 TGACTTCACC
Statistics
Matches: 514, Mismatches: 44, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
131 2 0.00
132 510 0.99
133 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (131 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGG
AGATAAGGCTGGTGGATTAAATCTGCTCCATTGCTACTACATGGAGATAAGATTGTCATCTTCGA
T
Found at i:103355899 original size:44 final size:44
Alignment explanation
Indices: 103355851--103356343 Score: 241
Period size: 44 Copynumber: 11.2 Consensus size: 44
103355841 GTCACTACAT
* ** *
103355851 GGAGATAAGATTCGCCATCTTTGATCTGCTCCACTACTACTTAG
1 GGAGATAAGATTCGCAATCTTCAATCTGCTCCACTACTGCTTAG
** *
103355895 GGAGATAAGA-TCTGCAATCTTCAGCCTGTTCCACTACTGCTTAG
1 GGAGATAAGATTC-GCAATCTTCAATCTGCTCCACTACTGCTTAG
** **** * * * ** * *
103355939 GGAGATAAGGCT-GGTGGCTTAAATCTGCTCCATTGCCACTACAT
1 GGAGATAAGATTCGCAATCTTCAATCTGCTCCACTACTGCT-TAG
* ** *
103355983 GGAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAG
1 GGAGATAAGATTCGCAATCTTCAATCTGCTCCACTACTGCTTAG
* ** **
103356027 GGAGATAAGA-TCTGTAATCTTCAGCCTATTCCACTACTGCTTAG
1 GGAGATAAGATTC-GCAATCTTCAATCTGCTCCACTACTGCTTAG
* ** * ** * * * * * *
103356071 GGAAATAAGGCTGGTGGA--TTAAATCTGCTCCATTGCTACTACAT
1 GGAGATAAGATTCG-CAATCTTCAATCTGCTCCACTACTGCT-TAG
* * * *
103356115 GGAGATAAGATTTGTC-GTCTTCGATCCGCTCCACTACTGCTTAG
1 GGAGATAAGATTCG-CAATCTTCAATCTGCTCCACTACTGCTTAG
* ** *
103356159 GGAGATAAGATAT-GCAATTTTCAGCCTGTTCCACTACTGCTTAG
1 GGAGATAAGAT-TCGCAATCTTCAATCTGCTCCACTACTGCTTAG
** * ** * * * ** * *
103356203 GGAGATAAGGCTGGTGGA--TTAAATCTGCTCCATTGCCCCTACAT
1 GGAGATAAGATTCG-CAATCTTCAATCTGCTCCACTACTGCT-TAG
*
103356247 GGAGATAAGATTCGTC-ATCTTCGATCTGCTCCACTACTGCTTAG
1 GGAGATAAGATTCG-CAATCTTCAATCTGCTCCACTACTGCTTAG
* * *
103356291 GGAGATAAGATTTGCAATCTTCAACCTGTTCCACTACTGCTTAG
1 GGAGATAAGATTCGCAATCTTCAATCTGCTCCACTACTGCTTAG
103356335 GGAGATAAG
1 GGAGATAAG
103356344 GCTAGTGGCT
Statistics
Matches: 320, Mismatches: 111, Indels: 36
0.69 0.24 0.08
Matches are distributed among these distances:
43 52 0.16
44 213 0.67
45 55 0.17
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (44 bp):
GGAGATAAGATTCGCAATCTTCAATCTGCTCCACTACTGCTTAG
Found at i:103356207 original size:88 final size:87
Alignment explanation
Indices: 103355460--103356343 Score: 232
Period size: 88 Copynumber: 10.1 Consensus size: 87
103355450 CTTTAGAAAA
* * * *
103355460 ATAAGATTCGCTATCTTCAGCCTGCTCCACTACTGCTCAGGGAGATAAGACTTGT-ATCTT-GAG
1 ATAAGATT-GCAATCTTCAGCCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTCATCTTCGAT
* * *
103355523 CCTGCTCCACTGCAACTCAGGGAG
65 CC-GCTCCACTACTACTTAGGGAG
* ** * * * * *
103355547 ATAGGGCT-CACCATCTT-GGATCTGCTCCACTACTGCTTAAGGAGATAAGATCT-TCAATCATC
1 ATAAGATTGCA--ATCTTCAG-CCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTC-ATCTTC
* * *
103355609 -AGCCCGCTCCACTACTGCCTAGGGAG
62 GA-TCCGCTCCACTACTACTTAGGGAG
* * *** * ** * * * * * * * * * *
103355635 ATAAGGCTAGTGGT-TTAAATCTGCTCTATTGCTGCTACATGGAGATAAGATTCGCCGTATTTGA
1 ATAA-GATTGCAATCTTCAGCCTGCTCCACTACTGCT-TAGGGAGATAAGATTTGTCATCTTCGA
* * *
103355699 TCTGCTCCACTACTAATTAGGGAA
64 TCCGCTCCACTACTACTTAGGGAG
* * * *
103355723 ATAAGATATGTAATCATCAGCCTGCTTCACTACTGCTTAGGGAGATAAGATCTG-CAATCTTC-A
1 ATAAGAT-TGCAATCTTCAGCCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTC-ATCTTCGA
* ** *
103355786 GCCTATTCCACTACTGCTTAGGGAG
64 TCC-GCTCCACTACTACTTAGGGAG
* * ** * * * * * * *
103355811 ATAAG---GCTAGTGGCTTAAATCTACTCTATTGTCACTAC--ATGGAGATAAGATTCGCCATCT
1 ATAAGATTGC-AAT--CTTCAGCCTGCTCCA--CT-ACTGCTTAGGGAGATAAGATTTGTCATCT
* *
103355871 TTGATCTGCTCCACTACTACTTAGGGAG
60 TCGATCCGCTCCACTACTACTTAGGGAG
* ** * ** **
103355899 ATAAGATCTGCAATCTTCAGCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGGT-GGCTTAAAT
1 ATAAGAT-TGCAATCTTCAGCCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTCATCTTCGAT
* * * * * *
103355963 CTGCTCCATTGCCACTACATGGAG
65 CCGCTCCACTACTACT-TAGGGAG
* * * *
103355987 ATAAGATT-CACCGTCTTC-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC-
1 ATAAGATTGCA--ATCTTCAG-CCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTCATCTTCG
* ** * *
103356049 AGCCTATTCCACTACTGCTTAGGGAA
63 ATCC-GCTCCACTACTACTTAGGGAG
** ***** * ** * * * * * *
103356075 ATAAGGCTGGTGGATTAAATCTGCTCCATTGCTACTACATGGAGATAAGATTTGTCGTCTTCGAT
1 ATAAGATTGCAATCTTCAGCCTGCTCCACTACTGCT-TAGGGAGATAAGATTTGTCATCTTCGAT
*
103356140 CCGCTCCACTACTGCTTAGGGAG
65 CCGCTCCACTACTACTTAGGGAG
* * ** * * **
103356163 ATAAGATATGCAATTTTCAGCCTGTTCCACTACTGCTTAGGGAGATAAGGCTGGTGGA--TTAAA
1 ATAAGAT-TGCAATCTTCAGCCTGCTCCACTACTGCTTAGGGAGATAAGATTTGT-CATCTTCGA
* * * ** * *
103356226 TCTGCTCCATTGCCCCTACATGGAG
64 TCCGCTCCACTACTACT-TAGGGAG
*
103356251 ATAAGATTCGTC-ATCTTC-GATCTGCTCCACTACTGCTTAGGGAGATAAGATTTG-CAATCTTC
1 ATAAGATT-G-CAATCTTCAG-CCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTC-ATCTTC
* * *
103356313 -AACCTGTTCCACTACTGCTTAGGGAG
62 GATCC-GCTCCACTACTACTTAGGGAG
103356339 ATAAG
1 ATAAG
103356344 GCTAGTGGCT
Statistics
Matches: 545, Mismatches: 201, Indels: 101
0.64 0.24 0.12
Matches are distributed among these distances:
84 1 0.00
85 3 0.01
86 8 0.01
87 123 0.23
88 327 0.60
89 75 0.14
90 4 0.01
91 2 0.00
92 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (87 bp):
ATAAGATTGCAATCTTCAGCCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTCATCTTCGATC
CGCTCCACTACTACTTAGGGAG
Found at i:103356430 original size:176 final size:176
Alignment explanation
Indices: 103355566--103356430 Score: 498
Period size: 176 Copynumber: 4.9 Consensus size: 176
103355556 ACCATCTTGG
* * * * *
103355566 ATCTGCTCCACTACTGCTTAAGGAGATAAGATCTT-CAATCATCAGCCCGCTCCACTACTGCCTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGAT-TTGCAATCTTCAACCTGCTCCACTACTGCTTA
* *
103355630 GGGAGATAAGGCTAGTGGTTTAAATCTGC-TCTATTGCTGCTACATGGAGATAAGATTCGCCGTA
65 GGGAGATAAGGCTAGTGGCTTAAATCTGCTTC-ATTGCTGCTACATGGAGATAAGATTCGTCGTA
* * * *
103355694 TTTGATCTGCTCCACTACTAATTAGGGAAATAAGATAT-GT-AATCATC
129 TTTGATCTGCTCCACTACTACTTAGGGAGATAAGAT-TCGTGCATCTTC
* * * * **
103355741 AGCCTGCTTCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTATTCCACTACTGCTTA
1 A-TCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTCAACCTGCTCCACTACTGCTTA
* * * *
103355806 GGGAGATAAGGCTAGTGGCTTAAATCTAC-TCTATTG-TCACTACATGGAGATAAGATTCGCCAT
65 GGGAGATAAGGCTAGTGGCTTAAATCTGCTTC-ATTGCT-GCTACATGGAGATAAGATTCGTCGT
*
103355869 CTTTGATCTGCTCCACTACTACTTAGGGAGATAAGA-TC-TGCAATCTTC
128 ATTTGATCTGCTCCACTACTACTTAGGGAGATAAGATTCGTGC-ATCTTC
* * ** **** * * * * ** *
103355917 AGCCTGTTCCACTACTGCTTAGGGAGATAAG-GCTGGTGGCTTAAATCTGCTCCATTGCCACTAC
1 A-TCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTCAACCTGCTCCACTACTGCT-T
* ** ** * ** * * * * *
103355981 ATGGAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCT-TAGGGAGATAAGA-TC-T-GT
64 AGGGAGATAAGGCT-AGTGGCTTAAATCTGCTTCATTGCTGCTACATGGAGATAAGATTCGTCGT
* * ** * * ** * * **
103356042 AATCTTCAGCCTATTCCACTACTGCTTAGGGAAATAAGGCTGGTGGAT-TAA
128 -AT-TTGA-TCTGCTCCACTACTACTTAGGGAGATAAGATTCGTGCATCTTC
* * * * * * *
103356093 ATCTGCTCCATTGCTACTACATGGAGATAAGATTTGTC-GTCTTCGATCC-GCTCCACTACTGCT
1 ATCTGCTCCACTACTGCT-TAGGGAGATAAGATTTG-CAATCTTC-AACCTGCTCCACTACTGCT
* * ** * * * * ** *
103356156 TAGGGAGATAA-GATA-T-GCAATTTTCAGCCTG-TTCCACTACTGCT-TAGGGAGATAAGGCTG
63 TAGGGAGATAAGGCTAGTGGC----TTAAATCTGCTT-CATTGCTGCTACATGGAGATAAGATTC
* ** * * ** * *
103356216 GT-GGATTAAATCTGCTCCATTGCCCCTACATGGAGATAAGATTCGT-CATCTTC
123 GTCGTATTTGATCTGCTCCACTACTACT-TAGGGAGATAAGATTCGTGCATCTTC
*
103356269 GATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTCAACCTGTTCCACTACTGCTTA
1 -ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTCAACCTGCTCCACTACTGCTTA
* * *
103356334 GGGAGATAAGGCTAGTGGCTTAAATCTGCTTCATTGCTGCTACATGGAGATAATATTCATCGTCT
65 GGGAGATAAGGCTAGTGGCTTAAATCTGCTTCATTGCTGCTACATGGAGATAAGATTCGTCGTAT
* * *
103356399 TTGATCTGCTCCACTATTGCTTAGCGAGATAA
130 TTGATCTGCTCCACTACTACTTAGGGAGATAA
103356431 TATCTGTGAC
Statistics
Matches: 507, Mismatches: 146, Indels: 73
0.70 0.20 0.10
Matches are distributed among these distances:
172 1 0.00
173 1 0.00
174 4 0.01
175 69 0.14
176 351 0.69
177 70 0.14
178 9 0.02
179 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (176 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATCTTCAACCTGCTCCACTACTGCTTAG
GGAGATAAGGCTAGTGGCTTAAATCTGCTTCATTGCTGCTACATGGAGATAAGATTCGTCGTATT
TGATCTGCTCCACTACTACTTAGGGAGATAAGATTCGTGCATCTTC
Found at i:103358124 original size:19 final size:18
Alignment explanation
Indices: 103358087--103358128 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
103358077 TTTTTGTTTG
*
103358087 TCTTTGTTTTTTCCTTTC
1 TCTTTTTTTTTTCCTTTC
*
103358105 TCTTTTTTTTGTTTCTTTC
1 TCTTTTTTTT-TTCCTTTC
103358124 T-TTTT
1 TCTTTT
103358129 GGCTACCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.00, C:0.17, G:0.05, T:0.79
Consensus pattern (18 bp):
TCTTTTTTTTTTCCTTTC
Found at i:103363060 original size:21 final size:23
Alignment explanation
Indices: 103363013--103363066 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
103363003 CATTCAAGAT
** *
103363013 AAAATAATATATAAAACTCTTTG
1 AAAATAATATATAAAACTAATTC
103363036 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTC
103363057 AAAAT-ATATA
1 AAAATAATATA
103363067 ATGTGTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTC
Found at i:103363324 original size:15 final size:15
Alignment explanation
Indices: 103363302--103363339 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
103363292 ATAATAGTAG
103363302 AAAT-ATAAATAAAT
1 AAATAATAAATAAAT
* *
103363316 AAATAATAATTAGAT
1 AAATAATAAATAAAT
103363331 AAATAATAA
1 AAATAATAA
103363340 TAGTATTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (15 bp):
AAATAATAAATAAAT
Found at i:103363334 original size:29 final size:29
Alignment explanation
Indices: 103363255--103363335 Score: 76
Period size: 29 Copynumber: 2.7 Consensus size: 29
103363245 AATAATAATG
*
103363255 AAAATAATATTAGTATATAAATAGAAATTAA
1 AAAATAATAATAG--TATAAATAGAAATTAA
* * *
103363286 AATATAATAATAGTAGAAATATAAA-TAA
1 AAAATAATAATAGTATAAATAGAAATTAA
103363314 ATAAATAATAATTAG-ATAAATA
1 A-AAATAATAA-TAGTATAAATA
103363336 ATAATAGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
28 4 0.10
29 24 0.57
30 3 0.07
31 11 0.26
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (29 bp):
AAAATAATAATAGTATAAATAGAAATTAA
Found at i:103363911 original size:5 final size:5
Alignment explanation
Indices: 103363901--103363970 Score: 51
Period size: 5 Copynumber: 14.0 Consensus size: 5
103363891 TAACTAATTT
*
103363901 AATAA ATTAA AATAA AATAA AA-ATA AATAA AA-ATA AATAA AA-ACA
1 AATAA AATAA AATAA AATAA AATA-A AATAA AATA-A AATAA AATA-A
103363946 AA-AA ACA-AA AATAAA AATAA AATAA
1 AATAA A-ATAA AAT-AA AATAA AATAA
103363971 TATCTTCCTA
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
4 6 0.11
5 42 0.76
6 7 0.13
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:103363916 original size:10 final size:10
Alignment explanation
Indices: 103363901--103363966 Score: 82
Period size: 10 Copynumber: 6.6 Consensus size: 10
103363891 TAACTAATTT
*
103363901 AATAAATTAA
1 AATAAATAAA
103363911 AATAAAATAAA
1 AAT-AAATAAA
103363922 AATAAATAAA
1 AATAAATAAA
103363932 AATAAATAAA
1 AATAAATAAA
*
103363942 AACAAA-AAA
1 AATAAATAAA
103363951 CAA-AAATAAA
1 -AATAAATAAA
103363961 AATAAA
1 AATAAA
103363967 ATAATATCTT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
9 8 0.16
10 33 0.66
11 9 0.18
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (10 bp):
AATAAATAAA
Found at i:103363923 original size:6 final size:6
Alignment explanation
Indices: 103363904--103363967 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
103363894 CTAATTTAAT
* * * *
103363904 AAATTA AAAT-A AAATAA AAATAA ATAAAAA TAAATAA AAACAAA AAACAA
1 AAATAA AAATAA AAATAA AAATAA A-AATAA -AAATAA AAA-TAA AAATAA
103363954 AAATAA AAATAA AA
1 AAATAA AAATAA AA
103363968 TAATATCTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
5 5 0.10
6 30 0.61
7 13 0.27
8 1 0.02
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:103364712 original size:41 final size:40
Alignment explanation
Indices: 103364667--103364757 Score: 128
Period size: 40 Copynumber: 2.2 Consensus size: 40
103364657 AGCGGCGCTT
* * *
103364667 TTAGCGGCGTTTTAACAAAAAACACCACTAAAAAAAGAGCA
1 TTAGCGGCGCTTCAAC-AAAAACAACACTAAAAAAAGAGCA
* *
103364708 TTAGCGGCGCTTCCACAAAAACAACACTAAAAAATGAGCA
1 TTAGCGGCGCTTCAACAAAAACAACACTAAAAAAAGAGCA
103364748 TTAGCGGCGC
1 TTAGCGGCGC
103364758 CTATAAAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 32 0.71
41 13 0.29
ACGTcount: A:0.43, C:0.23, G:0.18, T:0.16
Consensus pattern (40 bp):
TTAGCGGCGCTTCAACAAAAACAACACTAAAAAAAGAGCA
Found at i:103368004 original size:101 final size:101
Alignment explanation
Indices: 103367880--103368081 Score: 368
Period size: 101 Copynumber: 2.0 Consensus size: 101
103367870 GAACTTGGAC
*
103367880 TCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACAAACTCGGACTCAACTCAACGAGTTCGT
1 TCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACAAACTCGGACTCAACTCAACGAGTTCGG
103367945 ACATTTGCATCCATAAGTGAACTCGAACTCAACTCA
66 ACATTTGCATCCATAAGTGAACTCGAACTCAACTCA
*
103367981 TCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCGGACTCAACTCAACGAGTTCGG
1 TCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACAAACTCGGACTCAACTCAACGAGTTCGG
* *
103368046 ACATTTGCATCCATAAGTGAAGTCGGACTCAACTCA
66 ACATTTGCATCCATAAGTGAACTCGAACTCAACTCA
103368082 ACGAGTTCGG
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 97 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (101 bp):
TCAACTCAACGAGTTCGGATGCCTAGTTACATCTCACAAACTCGGACTCAACTCAACGAGTTCGG
ACATTTGCATCCATAAGTGAACTCGAACTCAACTCA
Found at i:103368039 original size:47 final size:49
Alignment explanation
Indices: 103367816--103368096 Score: 180
Period size: 46 Copynumber: 5.8 Consensus size: 49
103367806 TGTAACCCAC
** * *
103367816 CCATAAGTAAACTCGGACTCAACTCAACGAGCTCGG--G-CA-TTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACAT
* * *
103367862 CCATGAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * * * *
103367912 -C-TCA-CAAACTCGGACTCAACTCAACGAGTTC-G-T-ACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
* *
103367955 CCATAAGTGAACTCGAACTCAACTCATCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCG-----GA--C-TCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * *
103368013 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
* *
103368056 CCATAAGTGAAGTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC
103368097 CAAATATCCC
Statistics
Matches: 182, Mismatches: 27, Indels: 49
0.71 0.10 0.19
Matches are distributed among these distances:
43 12 0.07
44 4 0.02
45 5 0.03
46 67 0.37
47 43 0.24
48 4 0.02
49 3 0.02
50 5 0.03
51 3 0.02
53 1 0.01
54 16 0.09
55 8 0.04
56 3 0.02
57 2 0.01
58 6 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:103372374 original size:8 final size:8
Alignment explanation
Indices: 103372363--103372420 Score: 57
Period size: 8 Copynumber: 7.4 Consensus size: 8
103372353 TGATTATGAT
103372363 AATAGTGG
1 AATAGTGG
103372371 AATAGTGG
1 AATAGTGG
*
103372379 AATAGTGT
1 AATAGTGG
103372387 AAT--TGCG
1 AATAGTG-G
* *
103372394 TATAGTGT
1 AATAGTGG
*
103372402 AATAGTGT
1 AATAGTGG
103372410 AATAGTGG
1 AATAGTGG
103372418 AAT
1 AAT
103372421 TTTTTGATTG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
6 2 0.05
7 2 0.05
8 35 0.85
9 2 0.05
ACGTcount: A:0.36, C:0.02, G:0.29, T:0.33
Consensus pattern (8 bp):
AATAGTGG
Found at i:103373270 original size:99 final size:98
Alignment explanation
Indices: 103373078--103373272 Score: 252
Period size: 99 Copynumber: 2.0 Consensus size: 98
103373068 ATGTTTACTT
* *
103373078 AAATTAATAAATGCAAATTAAAAGAAAGATTTAACAAGTTTAATGTCATTAATTTAAATATTTTA
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTTAATG-CAATAATTTAAATATTTTA
* *
103373143 TTTTATTTTTATATTACCTAATTTTTAAATTAAC
65 TTTTATTTTTAAATTACCTAATTATTAAATTAAC
* ***
103373177 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAATGTTT-A-G-AATATTTTGTCTACTTTT
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAA-GTTTAATGCAATAATTTAAATA-TTTT
103373239 ATTTTATTTTTAAATTACCTAATTAAATTAAATT
64 ATTTTATTTTTAAATTACCTAATT--ATTAAATT
103373273 GTATTTAAAG
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
96 8 0.10
97 27 0.32
98 1 0.01
99 44 0.52
100 4 0.05
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.44
Consensus pattern (98 bp):
AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTTAATGCAATAATTTAAATATTTTAT
TTTATTTTTAAATTACCTAATTATTAAATTAAC
Found at i:103373381 original size:5 final size:5
Alignment explanation
Indices: 103373373--103373402 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
103373363 GTATTTAAAG
103373373 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
103373403 ATCAGGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:103373381 original size:90 final size:91
Alignment explanation
Indices: 103373225--103373504 Score: 404
Period size: 89 Copynumber: 3.0 Consensus size: 91
103373215 GTTTAGAATA
103373225 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
103373290 TTATTTTATTTTAATCAAGAAAAAAC
66 TTATTTTATTTTAATCAAGAAAAAAC
* *
103373316 TTTTGTCAAATTTTATTTTATTTTTAAATTACCT-ATTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG-------
*
103373380 TTATTTTATTTTATTTTATTTTAATCAGGAAAAAAC
59 ---TTTTATTTTATTTTATTTTAATCAAGAAAAAAC
*
103373416 --TTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAATTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
*
103373479 TTATTTTATTTTAATCACGAAAAAAC
66 TTATTTTATTTTAATCAAGAAAAAAC
103373505 CTAATTAAAT
Statistics
Matches: 171, Mismatches: 7, Indels: 24
0.85 0.03 0.12
Matches are distributed among these distances:
89 32 0.19
90 23 0.13
91 32 0.19
98 30 0.18
99 22 0.13
100 32 0.19
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.54
Consensus pattern (91 bp):
TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
TTATTTTATTTTAATCAAGAAAAAAC
Found at i:103373478 original size:99 final size:99
Alignment explanation
Indices: 103373283--103373491 Score: 357
Period size: 99 Copynumber: 2.1 Consensus size: 99
103373273 GTATTTAAAG
103373283 TTTTATTTTATTTTATTTTAATCAAGAAAAAACTTTTGTCAAATTTTATTTTATTTTTAAATTAC
1 TTTTATTTTATTTTATTTTAATCAAGAAAAAAC-TTTGTCAAATTTTATTTTATTTTTAAATTAC
*
103373348 CTATTAAATTAAATTGTATTTAAAGTTTTATTTTA
65 CTATTAAATTAAATTGTATTTAAAATTTTATTTTA
* * *
103373383 TTTTATTTTATTTTATTTTAATCAGGAAAAAAC-TTGTCTACTTTTATTTTATTTTTAAATTACC
1 TTTTATTTTATTTTATTTTAATCAAGAAAAAACTTTGTCAAATTTTATTTTATTTTTAAATTACC
103373447 TAATTAAATTAAATTGTATTTAAAATTTTATTTTA
66 T-ATTAAATTAAATTGTATTTAAAATTTTATTTTA
103373482 TTTTATTTTA
1 TTTTATTTTA
103373492 ATCACGAAAA
Statistics
Matches: 104, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
98 30 0.29
99 42 0.40
100 32 0.31
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (99 bp):
TTTTATTTTATTTTATTTTAATCAAGAAAAAACTTTGTCAAATTTTATTTTATTTTTAAATTACC
TATTAAATTAAATTGTATTTAAAATTTTATTTTA
Found at i:103373695 original size:9 final size:9
Alignment explanation
Indices: 103373683--103373789 Score: 67
Period size: 9 Copynumber: 11.7 Consensus size: 9
103373673 AAATATATAT
*
103373683 CATATTTTA
1 CATAATTTA
103373692 CATAATTTA
1 CATAATTTA
*
103373701 CATAACTTA
1 CATAATTTA
* *
103373710 CATGA--GA
1 CATAATTTA
103373717 CATAAATATATA
1 CAT-AAT-T-TA
103373729 TCAT-ATCTTA
1 -CATAAT-TTA
103373739 CATAATTTA
1 CATAATTTA
**
103373748 CATAATTCG
1 CATAATTTA
* *
103373757 GATAACTTA
1 CATAATTTA
103373766 CATAATTTA
1 CATAATTTA
*
103373775 CATAACTTA
1 CATAATTTA
103373784 CATAAT
1 CATAAT
103373790 ACATAAATAT
Statistics
Matches: 74, Mismatches: 17, Indels: 14
0.70 0.16 0.13
Matches are distributed among these distances:
7 4 0.05
8 1 0.01
9 58 0.78
10 4 0.05
11 3 0.04
12 1 0.01
13 3 0.04
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.38
Consensus pattern (9 bp):
CATAATTTA
Found at i:103373710 original size:18 final size:18
Alignment explanation
Indices: 103373689--103373789 Score: 80
Period size: 18 Copynumber: 5.5 Consensus size: 18
103373679 ATATCATATT
103373689 TTACATAATTTACATAAC
1 TTACATAATTTACATAAC
* * *
103373707 TTACATGA--GACATAAA
1 TTACATAATTTACATAAC
* *
103373723 TATATATCATATCTTACATAAT
1 T-TACAT-A-AT-TTACATAAC
***
103373745 TTACATAATTCGGATAAC
1 TTACATAATTTACATAAC
103373763 TTACATAATTTACATAAC
1 TTACATAATTTACATAAC
103373781 TTACATAAT
1 TTACATAAT
103373790 ACATAAATAT
Statistics
Matches: 62, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
16 7 0.11
17 4 0.06
18 36 0.58
19 3 0.05
20 1 0.02
21 4 0.06
22 7 0.11
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.38
Consensus pattern (18 bp):
TTACATAATTTACATAAC
Found at i:103373788 original size:27 final size:25
Alignment explanation
Indices: 103373683--103373822 Score: 77
Period size: 27 Copynumber: 5.2 Consensus size: 25
103373673 AAATATATAT
*
103373683 CATATTTTACATAATTTACATAACTTA
1 CATAATTTACATAA-TT-CATAACTTA
** * *
103373710 CATGAGACATAAATATATATCATATCTTA
1 CAT-A-ATTTACATA-AT-TCATAACTTA
103373739 CATAATTTACATAATTCGGATAACTTA
1 CATAATTTACATAATTC--ATAACTTA
103373766 CATAATTTACATAACTTACATAA--TA
1 CATAATTTACATAA-TT-CATAACTTA
* * * *
103373791 CATAAATATATATCATATCAAAACTTA
1 CAT-AATTTACATAAT-TCATAACTTA
103373818 CATAA
1 CATAA
103373823 CTTAATTAGA
Statistics
Matches: 88, Mismatches: 13, Indels: 25
0.70 0.10 0.20
Matches are distributed among these distances:
25 12 0.14
26 13 0.15
27 39 0.44
28 4 0.05
29 18 0.20
30 2 0.02
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (25 bp):
CATAATTTACATAATTCATAACTTA
Found at i:103376763 original size:39 final size:39
Alignment explanation
Indices: 103376709--103376787 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
103376699 TAACCAATTA
103376709 AACTTGTGTTTAACATAGTGAGTACAAACAAATTTTGAG
1 AACTTGTGTTTAACATAGTGAGTACAAACAAATTTTGAG
103376748 AACTTGTGTTTAACATAGTGAGTACAAACAAATTTTGAG
1 AACTTGTGTTTAACATAGTGAGTACAAACAAATTTTGAG
103376787 A
1 A
103376788 TCTCGTGCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (39 bp):
AACTTGTGTTTAACATAGTGAGTACAAACAAATTTTGAG
Found at i:103377814 original size:27 final size:26
Alignment explanation
Indices: 103377777--103377891 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
103377767 AGCATGGCTG
* *
103377777 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
103377803 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
103377831 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
103377858 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
103377885 CCAGAAC
1 CCAGAAC
103377892 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.06
27 57 0.73
28 16 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:103377836 original size:54 final size:54
Alignment explanation
Indices: 103377777--103377891 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
103377767 AGCATGGCTG
* *
103377777 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
103377831 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
103377885 CCAGAAC
1 CCAGAAC
103377892 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:103379544 original size:26 final size:26
Alignment explanation
Indices: 103379508--103379617 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
103379498 CATGAAATTC
103379508 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
103379534 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
103379560 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
103379586 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
103379612 TTATCA
1 TTATCA
103379618 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
26 79 0.98
27 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:103380626 original size:26 final size:26
Alignment explanation
Indices: 103380597--103380704 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
103380587 TGGTACAAAT
103380597 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
103380623 TGATAATGGATTAAGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103380649 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
103380675 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103380701 TGAT
1 TGAT
103380705 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:103387723 original size:26 final size:26
Alignment explanation
Indices: 103387694--103387801 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
103387684 TGGTACAAAT
103387694 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
103387720 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103387746 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
103387772 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103387798 TGAT
1 TGAT
103387802 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:103392295 original size:26 final size:26
Alignment explanation
Indices: 103392259--103392311 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
103392249 AAGAAGGCAG
103392259 AATATGAAGCGATTGCTTCGACTGAT
1 AATATGAAGCGATTGCTTCGACTGAT
103392285 AATATGAAGCGATTGCTTCGACTGAT
1 AATATGAAGCGATTGCTTCGACTGAT
103392311 A
1 A
103392312 GTTCTGTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (26 bp):
AATATGAAGCGATTGCTTCGACTGAT
Found at i:103392623 original size:21 final size:21
Alignment explanation
Indices: 103392581--103392688 Score: 67
Period size: 21 Copynumber: 5.1 Consensus size: 21
103392571 ACTTAGATTG
* *
103392581 GAGGCAGCAGA-GAAGGAGGCA
1 GAGGCAGCA-ACGAGGGAAGCA
* *
103392602 GTGGCAGCAACGAGGGACGCA
1 GAGGCAGCAACGAGGGAAGCA
* * *
103392623 GCGACAGCAGCGAGGGAAGCA
1 GAGGCAGCAACGAGGGAAGCA
* *
103392644 GAGGCA-CGAGCGAGGGAGGCA
1 GAGGCAGC-AACGAGGGAAGCA
* * * *
103392665 GAGGCAACAGCGATGGCAGCA
1 GAGGCAGCAACGAGGGAAGCA
103392686 GAG
1 GAG
103392689 CAGAGCAAAA
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
20 2 0.03
21 68 0.96
22 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.45, T:0.02
Consensus pattern (21 bp):
GAGGCAGCAACGAGGGAAGCA
Found at i:103394705 original size:31 final size:31
Alignment explanation
Indices: 103394664--103394734 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
103394654 AGTGATTAAC
* * * *
103394664 AGTTCCATAACTTAAAT-AAAATTTTTTGAAT
1 AGTTCAATAACATAAATGAAAA-CTTTAGAAT
103394695 AGTTCAATAACATAAATGAAAACTTTAGAAT
1 AGTTCAATAACATAAATGAAAACTTTAGAAT
*
103394726 AATTCAATA
1 AGTTCAATA
103394735 GTTATATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 30 0.88
32 4 0.12
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.35
Consensus pattern (31 bp):
AGTTCAATAACATAAATGAAAACTTTAGAAT
Found at i:103400494 original size:14 final size:11
Alignment explanation
Indices: 103400454--103400487 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
103400444 ATTATTTATC
103400454 TAAATCAATA-A
1 TAAAT-AATATA
103400465 TAAATAATATA
1 TAAATAATATA
103400476 TAAATAATATA
1 TAAATAATATA
103400487 T
1 T
103400488 TTAAAATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 4 0.18
11 18 0.82
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (11 bp):
TAAATAATATA
Found at i:103400915 original size:18 final size:19
Alignment explanation
Indices: 103400876--103400917 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
103400866 AAATTAAATT
* *
103400876 AAATT-ATTATTATTTTTG
1 AAATTCATTATTATATTTA
103400894 AAATTCATTATTA-ATTTA
1 AAATTCATTATTATATTTA
103400912 AAATTC
1 AAATTC
103400918 TATAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.52
Consensus pattern (19 bp):
AAATTCATTATTATATTTA
Found at i:103407140 original size:39 final size:39
Alignment explanation
Indices: 103407093--103407255 Score: 213
Period size: 39 Copynumber: 4.2 Consensus size: 39
103407083 ATTTGGAACT
*
103407093 ATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAGC
1 ATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAC
* * *
103407132 ATATCCGGACTTGACGTCCGCAGGCTACGTGCCGAAAAC
1 ATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAC
*
103407171 ATATCCGGACTTGAGGTCTGCAAGG-TACGTGCTGG-AAC
1 ATATCCGGACTTGAGGTCCGC-AGGCTACGTGCTGGAAAC
* * * * *
103407209 ATATTCGGACTTGAGGTCCGCAGGTTATGTGCTAGAAAT
1 ATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAC
103407248 ATATCCGG
1 ATATCCGG
103407256 GCCTAAAGTC
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
37 3 0.03
38 30 0.28
39 71 0.66
40 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.23
Consensus pattern (39 bp):
ATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAC
Found at i:103415187 original size:39 final size:39
Alignment explanation
Indices: 103415128--103415247 Score: 154
Period size: 39 Copynumber: 3.1 Consensus size: 39
103415118 ATTTGGAACT
* *
103415128 ATATCCGGACTTGAGGTCCGCAGGCTACGTACTAGAAAC
1 ATATTCGGACTTGAGGTCCGCAGGCTACGTGCTAGAAAC
* *
103415167 ATATTCGGACTTGAGGTCCGCAAGCTACGTGCT-GGAAC
1 ATATTCGGACTTGAGGTCCGCAGGCTACGTGCTAGAAAC
* * *
103415205 ATA-TCTGGACTTGAGGTCCGCAGGTTATGTGCTAGAAAT
1 ATATTC-GGACTTGAGGTCCGCAGGCTACGTGCTAGAAAC
103415244 ATAT
1 ATAT
103415248 CCGGGCCTAA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
37 2 0.03
38 31 0.45
39 36 0.52
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
ATATTCGGACTTGAGGTCCGCAGGCTACGTGCTAGAAAC
Found at i:103415237 original size:38 final size:38
Alignment explanation
Indices: 103415121--103415245 Score: 146
Period size: 38 Copynumber: 3.3 Consensus size: 38
103415111 GCTTGATATT
* *
103415121 TGGAACTATATCCGGACTTGAGGTCCGCAGGCTACGTAC
1 TGGAAC-ATATCTGGACTTGAGGTCCGCAGGCTACGTGC
* *
103415160 TAGAAACATAT-TCGGACTTGAGGTCCGCAAGCTACGTGC
1 T-GGAACATATCT-GGACTTGAGGTCCGCAGGCTACGTGC
* *
103415199 TGGAACATATCTGGACTTGAGGTCCGCAGGTTATGTGC
1 TGGAACATATCTGGACTTGAGGTCCGCAGGCTACGTGC
*
103415237 TAGAA-ATAT
1 TGGAACATAT
103415246 ATCCGGGCCT
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
37 4 0.05
38 35 0.47
39 31 0.42
40 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (38 bp):
TGGAACATATCTGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:103415276 original size:77 final size:78
Alignment explanation
Indices: 103415121--103415265 Score: 193
Period size: 77 Copynumber: 1.9 Consensus size: 78
103415111 GCTTGATATT
* * * *
103415121 TGGAACTATATCCGGACTTGAGGTCCGCAGGCTACGTACTAGAAACATATTCGGACTTGAGGTCC
1 TGGAACTATATCCGGACTTGAGGTCCGCAGGCTACGTACTAGAAACATATCCGGACCTAAAGTCC
103415186 GCAAGCTACGTGC
66 GCAAGCTACGTGC
* * * * * *
103415199 TGGAAC-ATATCTGGACTTGAGGTCCGCAGGTTATGTGCTAGAAATATATCCGGGCCTAAAGTCC
1 TGGAACTATATCCGGACTTGAGGTCCGCAGGCTACGTACTAGAAACATATCCGGACCTAAAGTCC
103415263 GCA
66 GCA
103415266 GGCTTTGTGC
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
77 51 0.89
78 6 0.11
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (78 bp):
TGGAACTATATCCGGACTTGAGGTCCGCAGGCTACGTACTAGAAACATATCCGGACCTAAAGTCC
GCAAGCTACGTGC
Found at i:103426280 original size:46 final size:46
Alignment explanation
Indices: 103426112--103426284 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
103426102 TAACCGCCCC
* * * *
103426112 TAAGTGAACTCGAACTCAACTCAACGAGCTT-GGGCGTTCGCATCTA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
* *
103426158 TAAGTGAACTCGGACTCCACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
103426206 TCA-CGAACCCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
103426251 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
103426285 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 55 0.54
47 27 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:103426303 original size:46 final size:44
Alignment explanation
Indices: 103426160--103426303 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 44
103426150 CGCATCTATA
*
103426160 AGTGAACTCGGACTCCACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
103426207 CA-CGAACCCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
*
103426253 AGTGAACTCGGACTCAACTCAATGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
103426299 AGTGA
1 AGTGA
103426304 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 31 0.41
47 29 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:103426739 original size:30 final size:30
Alignment explanation
Indices: 103426705--103426765 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
103426695 AATTAATACG
* *
103426705 AACTTTGGCAAAATTACATTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
103426735 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
103426765 A
1 A
103426766 TCTCGGGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:103428372 original size:30 final size:30
Alignment explanation
Indices: 103428338--103428398 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
103428328 AATTAATACG
* *
103428338 AACTTTGGCAAAATTACATTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
103428368 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
103428398 A
1 A
103428399 TCTCGGGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:103429782 original size:49 final size:49
Alignment explanation
Indices: 103429696--103429815 Score: 172
Period size: 49 Copynumber: 2.4 Consensus size: 49
103429686 GAGGAAGTGC
* * **
103429696 AAAAGGGC-TATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTA-TT
1 AAAAGGGCTTTTGCCCCAG-TTACCAAAAAGGGCTTTGCCCCAGTTACCA
103429744 AAAAGGGCTTTTGCCCCAGTTACCAAAAAGGGCTTTTGCCCCAGTTACCA
1 AAAAGGGCTTTTGCCCCAGTTACCAAAAAGGGC-TTTGCCCCAGTTACCA
103429794 AAAAGGGCTTTTGCCCCAGTTA
1 AAAAGGGCTTTTGCCCCAGTTA
103429816 TTAAAAGAGG
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
48 21 0.32
49 22 0.34
50 22 0.34
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (49 bp):
AAAAGGGCTTTTGCCCCAGTTACCAAAAAGGGCTTTGCCCCAGTTACCA
Found at i:103429821 original size:25 final size:25
Alignment explanation
Indices: 103429696--103429815 Score: 174
Period size: 25 Copynumber: 4.9 Consensus size: 25
103429686 GAGGAAGTGC
* *
103429696 AAAAGGGC-TATGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAG-TTACCA
**
103429721 AAAAGGGC-TTTGCCCCAGTTA-TT
1 AAAAGGGCTTTTGCCCCAGTTACCA
103429744 AAAAGGGCTTTTGCCCCAGTTACCA
1 AAAAGGGCTTTTGCCCCAGTTACCA
103429769 AAAAGGGCTTTTGCCCCAGTTACCA
1 AAAAGGGCTTTTGCCCCAGTTACCA
103429794 AAAAGGGCTTTTGCCCCAGTTA
1 AAAAGGGCTTTTGCCCCAGTTA
103429816 TTAAAAGAGG
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
23 8 0.09
24 16 0.18
25 64 0.73
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTACCA
Found at i:103429838 original size:50 final size:50
Alignment explanation
Indices: 103429696--103429840 Score: 147
Period size: 50 Copynumber: 2.9 Consensus size: 50
103429686 GAGGAAGTGC
* * * **
103429696 AAAAGGGC-TATGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTTA-TT
1 AAAAGGGCTTTTGCCCCAG-TTACCAAAAAGGGCTTAGGCCCCAGTTACCA
**
103429744 AAAAGGGCTTTTGCCCCAGTTACCAAAAAGGGCTTTTGCCCCAGTTACCA
1 AAAAGGGCTTTTGCCCCAGTTACCAAAAAGGGCTTAGGCCCCAGTTACCA
**
103429794 AAAAGGGCTTTTGCCCCAGTTA-TTAAAAGAGGC-TAGGCCTCCAGTTA
1 AAAAGGGCTTTTGCCCCAGTTACCAAAAAG-GGCTTAGGCC-CCAGTTA
103429841 TATGATAAAG
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
48 23 0.27
49 29 0.35
50 32 0.38
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTTTTGCCCCAGTTACCAAAAAGGGCTTAGGCCCCAGTTACCA
Found at i:103430078 original size:31 final size:31
Alignment explanation
Indices: 103430040--103430103 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
103430030 CGTTTACAGT
103430040 AAAGGCTTCGGTCC-AGTGTTATGAAATATGA
1 AAAGGCTTCGG-CCTAGTGTTATGAAATATGA
103430071 AAAGGCTTCGGCCTAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCTAGTGTTATGAAATATGA
103430102 AA
1 AA
103430104 GATGAAAAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 2 0.06
31 30 0.94
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCTAGTGTTATGAAATATGA
Found at i:103439170 original size:28 final size:28
Alignment explanation
Indices: 103439122--103439175 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
103439112 ATATTTTAAT
* *
103439122 ATTAATAACGCTTTTTGAGTAGATACAA
1 ATTAATAACGCTTTTTAAGTAAATACAA
103439150 ATTAATAACG-TTTTTAAAGTAAATAC
1 ATTAATAACGCTTTTT-AAGTAAATAC
103439176 TTTTTGGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37
Consensus pattern (28 bp):
ATTAATAACGCTTTTTAAGTAAATACAA
Found at i:103441712 original size:33 final size:34
Alignment explanation
Indices: 103441669--103441739 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
103441659 ACAATGCATG
* * * *
103441669 CAGTAATAGTCTGGGCCTGAGCCTTATTCAGTAT
1 CAGTAATAGTCTGAGCCTGAGCCCTATACAGTAA
*
103441703 CAGT-ATAGTCTGAGCCTTAGCCCTATACAGTAA
1 CAGTAATAGTCTGAGCCTGAGCCCTATACAGTAA
103441736 CAGT
1 CAGT
103441740 GTAGGACTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (34 bp):
CAGTAATAGTCTGAGCCTGAGCCCTATACAGTAA
Found at i:103441955 original size:27 final size:27
Alignment explanation
Indices: 103441918--103441983 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
103441908 AGCATAGCTG
*
103441918 CCAGAAACAGTAAATGTGGCAAAGCCA
1 CCAGTAACAGTAAATGTGGCAAAGCCA
* * * *
103441945 CTAGTATCAGTAATTGTGGCATAGCCA
1 CCAGTAACAGTAAATGTGGCAAAGCCA
103441972 CCAGTAACAGTA
1 CCAGTAACAGTA
103441984 CTTCCTCCAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTAAATGTGGCAAAGCCA
Found at i:103447024 original size:25 final size:25
Alignment explanation
Indices: 103446996--103447052 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
103446986 TAATTAACCT
103446996 TTTTTTAAAT-TAAATTAAATTTCAA
1 TTTTTTAAATATAAATTAAATTT-AA
* * *
103447021 TTTTTT-TATATAAATTCAATTTAT
1 TTTTTTAAATATAAATTAAATTTAA
103447045 TTTTTTAA
1 TTTTTTAA
103447053 GTACTATAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (25 bp):
TTTTTTAAATATAAATTAAATTTAA
Found at i:103447144 original size:25 final size:24
Alignment explanation
Indices: 103447116--103447192 Score: 70
Period size: 25 Copynumber: 3.1 Consensus size: 24
103447106 TATTTTTGTA
103447116 TATTATTAATTATATTATTATACAT
1 TATTA-TAATTATATTATTATACAT
*
103447141 TATTATATATTATATTA-CATACAT
1 TATTATA-ATTATATTATTATACAT
*
103447165 T-TTACT-ATATATATTATTTATATAT
1 TATTA-TAAT-TATATTA-TTATACAT
103447190 TAT
1 TAT
103447193 CTATCATATT
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
22 2 0.05
23 10 0.23
24 10 0.23
25 20 0.47
26 1 0.02
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (24 bp):
TATTATAATTATATTATTATACAT
Found at i:103447156 original size:12 final size:12
Alignment explanation
Indices: 103447114--103447245 Score: 55
Period size: 12 Copynumber: 10.8 Consensus size: 12
103447104 TTTATTTTTG
103447114 TATATTAT-TAAT
1 TATATTATAT-AT
103447126 TATATTAT-TAT
1 TATATTATATAT
*
103447137 ACATTATTATATAT
1 -TA-TATTATATAT
*
103447151 TATATTACATACAT
1 TATATT--ATATAT
*
103447165 TTTACTATATATAT
1 TATA-T-TATATAT
103447179 TAT-TTATATAT
1 TATATTATATAT
*
103447190 TAT-CTATCATAT
1 TATATTAT-ATAT
*
103447202 TGT-TTATATTAT
1 TATATTATA-TAT
*
103447214 TATA-TATATTT
1 TATATTATATAT
103447225 TAT-TTATGA-AT
1 TATATTAT-ATAT
*
103447236 TTTATTATAT
1 TATATTATAT
103447246 GTACATATTT
Statistics
Matches: 93, Mismatches: 13, Indels: 28
0.69 0.10 0.21
Matches are distributed among these distances:
11 28 0.30
12 38 0.41
13 7 0.08
14 18 0.19
15 1 0.01
16 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.58
Consensus pattern (12 bp):
TATATTATATAT
Found at i:103447191 original size:46 final size:44
Alignment explanation
Indices: 103447126--103447265 Score: 108
Period size: 46 Copynumber: 3.1 Consensus size: 44
103447116 TATTATTAAT
*
103447126 TATATTATTATACATTATTATATATTATATTACATACATTTTACTATA
1 TATATTATT-TATA-TATTAT-TATTATATTACATA-ATTTTACTATA
* ***
103447174 TATATTATTTATATATTATCTATCATATTGTTTATATTATTA-TATA
1 TATATTATTTATATATTAT-TATTATATTACATA-ATT-TTACTATA
* *
103447220 TATTTTATTTATGA-ATT-TTATTATATGTACAT-ATTTTACCATA
1 TATATTATTTAT-ATATTATTATTATAT-TACATAATTTTACTATA
103447263 TAT
1 TAT
103447266 TATTCCTTAC
Statistics
Matches: 75, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
42 3 0.04
43 9 0.12
44 7 0.09
45 3 0.04
46 37 0.49
47 7 0.09
48 9 0.12
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.56
Consensus pattern (44 bp):
TATATTATTTATATATTATTATTATATTACATAATTTTACTATA
Found at i:103447201 original size:23 final size:23
Alignment explanation
Indices: 103447114--103447231 Score: 109
Period size: 23 Copynumber: 5.1 Consensus size: 23
103447104 TTTATTTTTG
103447114 TATATTATTA-AT-TATATTATT
1 TATATTATTATATATATATTATT
* **
103447135 ATACATTATTATATATTATATTACA
1 -TATATTATTATATA-TATATTATT
*
103447160 TACATT-TTACTATATATATTATT
1 TATATTATTA-TATATATATTATT
* *
103447183 TATA-TATTATCTATCATATTGTT
1 TATATTATTATATAT-ATATTATT
*
103447206 TATATTATTATATATATTTTATT
1 TATATTATTATATATATATTATT
103447229 TAT
1 TAT
103447232 GAATTTTATT
Statistics
Matches: 78, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
22 14 0.18
23 38 0.49
24 19 0.24
25 7 0.09
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.58
Consensus pattern (23 bp):
TATATTATTATATATATATTATT
Found at i:103447239 original size:13 final size:14
Alignment explanation
Indices: 103447210--103447246 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
103447200 ATTGTTTATA
103447210 TTATTATAT-ATATT
1 TTATTATATGA-ATT
103447224 TTATT-TATGAATT
1 TTATTATATGAATT
103447237 TTATTATATG
1 TTATTATATG
103447247 TACATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (14 bp):
TTATTATATGAATT
Found at i:103447244 original size:35 final size:37
Alignment explanation
Indices: 103447130--103447245 Score: 100
Period size: 35 Copynumber: 3.2 Consensus size: 37
103447120 ATTAATTATA
* *
103447130 TTATTATACATTATTATATATTATATTA-C-AT-ACATT
1 TTATTATATA-TATTATATA-TATATTATCTATCATATT
* *
103447166 TTACTATATATATTATTTATATATTATCTATCATATT
1 TTATTATATATATTATATATATATTATCTATCATATT
* * * *
103447203 GT-TTATAT-TATTATATATATTTTATTTATGA-ATT
1 TTATTATATATATTATATATATATTATCTATCATATT
103447237 TTATTATAT
1 TTATTATAT
103447246 GTACATATTT
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
34 11 0.17
35 34 0.52
36 15 0.23
37 5 0.08
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (37 bp):
TTATTATATATATTATATATATATTATCTATCATATT
Found at i:103451340 original size:48 final size:48
Alignment explanation
Indices: 103451284--103451383 Score: 166
Period size: 48 Copynumber: 2.1 Consensus size: 48
103451274 AAAGAGAGAG
* **
103451284 TAAG-AGAAAGAAAATCTGGAAGCAACACATCCTTACGGTACACGTGC
1 TAAGTAGAAAGAAAATCTGAAAGCAACACATCCTTACGGTACACACGC
103451331 TAAGTAGAAAGAAAATCTGAAAGCAACACATCCTTACGGTACACACGC
1 TAAGTAGAAAGAAAATCTGAAAGCAACACATCCTTACGGTACACACGC
103451379 TAAGT
1 TAAGT
103451384 CAAAGAGTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
47 4 0.08
48 45 0.92
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.18
Consensus pattern (48 bp):
TAAGTAGAAAGAAAATCTGAAAGCAACACATCCTTACGGTACACACGC
Found at i:103454332 original size:11 final size:11
Alignment explanation
Indices: 103454318--103454362 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
103454308 AGATAAATAT
103454318 TATTTTATTAA
1 TATTTTATTAA
*
103454329 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
103454342 TATTTTATTAT
1 TATTTTATTAA
103454353 TATTTTATTA
1 TATTTTATTA
103454363 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:103456511 original size:46 final size:46
Alignment explanation
Indices: 103456444--103456763 Score: 516
Period size: 46 Copynumber: 7.0 Consensus size: 46
103456434 AGTGTGCCCT
103456444 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
103456490 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
103456536 CTGATAAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
103456582 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
103456628 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
103456674 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
103456720 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
103456764 TCATGTCAAA
Statistics
Matches: 259, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 1 0.00
46 258 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:103463006 original size:44 final size:44
Alignment explanation
Indices: 103462957--103463667 Score: 883
Period size: 44 Copynumber: 16.2 Consensus size: 44
103462947 TAAAAAATGA
** *
103462957 CAGATTTGGCGTCTCTGTATTGTCAGAGAATAGATCGAAGAT-G
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
* * * *
103463000 ACAGATTTGGCGTCTCTGTATGGACAAAGAGAAGATCAAAGATAG
1 -CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
*
103463045 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAAATCAAAGAT-G
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
* * * *
103463088 ACAGATTTGGCGTCTCTATATGGACAGAGAGCATATCAAAGATAG
1 -CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
* * * *
103463133 CAGGTTTGGCGTCTCTGTATTGTCAGAGAGCAAATCAAATATTG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
* * *
103463177 CAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATAAAAAATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
* *
103463221 CAGATTTGACGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
* * * * *
103463265 AAGATTTGACGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAA
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
* *
103463309 TAGATTTGGCGTCTCTGTATGGAT-AGAGAGCAGATCAAAGATAG
1 CAGATTTGGCGTCTCTGTATTG-TCAGAGAGCAGATCAAAGATAG
*
103463353 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAAATCAAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
* * * *
103463397 CAGATTTGGCTTCTCTGTATTATCAAAAAGCAGATCAAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
* * * *
103463441 CAGATTTGGCATCTTTGTATTGTTAGAGAGCAGAT-ATAAAATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCA-AAGATAG
103463485 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
* * *
103463529 CAGATTTGGCGTCTCTGTATTCTCAGAGAGCAGATCGATGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
* * * ** *
103463573 TAGGTTTGGGGTCTCTGTATTGTTGGAGAGTAGATCGAAA-ATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATC-AAAGATAG
* * * * *
103463617 TAGATTTGGCATCTCCGTATTGTCAAAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
103463661 CAGATTT
1 CAGATTT
103463668 AACATTCCTG
Statistics
Matches: 575, Mismatches: 83, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
43 5 0.01
44 565 0.98
45 5 0.01
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAG
Found at i:103464363 original size:19 final size:19
Alignment explanation
Indices: 103464318--103464364 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
103464308 ATCAAATTAA
*
103464318 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
103464337 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
103464356 AATAAAAAT
1 AATAAAAAT
103464365 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:103468842 original size:21 final size:22
Alignment explanation
Indices: 103468816--103468877 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 22
103468806 ACTAAACTCT
103468816 AAACCCTTAACCCTT-AACCCC
1 AAACCCTTAACCCTTAAACCCC
*
103468837 AAACCCTT-ACACCTTAAACTCC
1 AAACCCTTAAC-CCTTAAACCCC
*
103468859 -AACCC-TAACCCCTAAACCC
1 AAACCCTTAACCCTTAAACCC
103468878 TAAATCATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
20 11 0.31
21 19 0.54
22 5 0.14
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.18
Consensus pattern (22 bp):
AAACCCTTAACCCTTAAACCCC
Found at i:103468968 original size:21 final size:21
Alignment explanation
Indices: 103468942--103469025 Score: 87
Period size: 21 Copynumber: 3.8 Consensus size: 21
103468932 CTCCTAAACT
*
103468942 TTAAACCCTAAACCATATATC
1 TTAAACCATAAACCATATATC
* * *
103468963 TTAAACTATAGTTAACTCATAAACC
1 TTAAACCATA---AAC-CATATATC
*
103468988 TTAAACCCTAAACCATATATC
1 TTAAACCATAAACCATATATC
103469009 TTAAACCATAAACCATA
1 TTAAACCATAAACCATA
103469026 AACTATAATG
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 30 0.60
22 3 0.06
24 3 0.06
25 14 0.28
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.29
Consensus pattern (21 bp):
TTAAACCATAAACCATATATC
Found at i:103468977 original size:46 final size:46
Alignment explanation
Indices: 103468925--103469014 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
103468915 CTTCAAATAC
* *
103468925 TAGTTAACTCCTAAACTTTAAACCCTAAACCATATATCTTAAACTA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
103468971 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
103469015 CATAAACCAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.42, C:0.24, G:0.02, T:0.31
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
Found at i:103468994 original size:7 final size:7
Alignment explanation
Indices: 103468980--103469033 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
103468970 ATAGTTAACT
103468980 CATAAAC
1 CATAAAC
*
103468987 CTTAAAC
1 CATAAAC
*
103468994 CCTAAAC
1 CATAAAC
* *
103469001 CATATAT
1 CATAAAC
*
103469008 CTTAAAC
1 CATAAAC
103469015 CATAAAC
1 CATAAAC
103469022 CATAAAC
1 CATAAAC
*
103469029 TATAA
1 CATAA
103469034 TGATAATTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (7 bp):
CATAAAC
Found at i:103469235 original size:41 final size:40
Alignment explanation
Indices: 103469190--103469367 Score: 214
Period size: 41 Copynumber: 4.4 Consensus size: 40
103469180 GTTATATGAC
*
103469190 TTTTAGCAGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCT-GT
* * *
103469231 TTTTAGCGGCGTTTTTACAAAAGCGTCGCTATTGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCT-GT
* * *
103469272 TTTTAGCGGCGTTTTGCAAAAAGCGCCACTAATGCTCTGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGT
* * *
103469312 TTTTTGCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCTGT
1 TTTTAGCGGCG-TTTTT-CCAAAAGCGCCGCTAATGCTCTGT
*
103469353 TTTTAGTGGCGTTTT
1 TTTTAGCGGCGTTTT
103469368 GGTAAAACGC
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
40 16 0.14
41 97 0.82
42 5 0.04
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.39
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGT
Found at i:103469357 original size:81 final size:82
Alignment explanation
Indices: 103469190--103469368 Score: 256
Period size: 82 Copynumber: 2.2 Consensus size: 82
103469180 GTTATATGAC
* * * *
103469190 TTTTAGCAGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTACAAAAGC
1 TTTTAGCGGCGTTTTGCAAAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTTACAAAAGC
*
103469255 GTCGCTATTGCTCTGGT
66 GCCGCTATTGCTCTGGT
*
103469272 TTTTAGCGGCGTTTTGCAAAAAGCGCCACTAATGCTCT-GTTTTTTGCGGCGTTTTTTACTAAAA
1 TTTTAGCGGCGTTTTGCAAAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCG-TTTTTAC-AAAA
103469336 -CGCCGCTATTGCTCT-GT
64 GCGCCGCTATTGCTCTGGT
*
103469353 TTTTAGTGGCGTTTTG
1 TTTTAGCGGCGTTTTG
103469369 GTAAAACGCC
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
81 29 0.33
82 55 0.62
83 4 0.05
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.39
Consensus pattern (82 bp):
TTTTAGCGGCGTTTTGCAAAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTTACAAAAGC
GCCGCTATTGCTCTGGT
Found at i:103469395 original size:41 final size:42
Alignment explanation
Indices: 103469190--103469396 Score: 207
Period size: 41 Copynumber: 5.1 Consensus size: 42
103469180 GTTATATGAC
* * * *
103469190 TTTTAGCAGCGTTTTTCCAAAAGCGCCGCTAATGCTCTG-GT
1 TTTTAGCGGCGTTTTGCTAAAAGCGCCGCTATTGCTCTGTGT
* *
103469231 TTTTAGCGGCGTTTTTAC-AAAAGCGTCGCTATTGCTCTG-GT
1 TTTTAGCGGCG-TTTTGCTAAAAGCGCCGCTATTGCTCTGTGT
* * *
103469272 TTTTAGCGGCGTTTTGCAAAAAGCGCCACTAATGCTCTGT-T
1 TTTTAGCGGCGTTTTGCTAAAAGCGCCGCTATTGCTCTGTGT
*
103469313 TTTT-GCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTC--TGT
1 TTTTAGCGGCG--TTTTGCTAAAAGCGCCGCTATTGCTCTGTGT
* * *
103469353 TTTTAGTGGCGTTTTGGTAAAA-CGCCGCTATTGCTATGTGT
1 TTTTAGCGGCGTTTTGCTAAAAGCGCCGCTATTGCTCTGTGT
103469394 TTT
1 TTT
103469397 ACAATTTTTG
Statistics
Matches: 141, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
39 23 0.16
40 16 0.11
41 88 0.62
42 14 0.10
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (42 bp):
TTTTAGCGGCGTTTTGCTAAAAGCGCCGCTATTGCTCTGTGT
Found at i:103469395 original size:82 final size:82
Alignment explanation
Indices: 103469190--103469396 Score: 246
Period size: 82 Copynumber: 2.5 Consensus size: 82
103469180 GTTATATGAC
* * *
103469190 TTTTAGCAGCGTTTTTCCAAAAGCGCCGCTAATGCTCTG-GTTTTTAGCGGCGTTTTTACAAAAG
1 TTTTAGCGGCGTTTTGCAAAAAGCGCCGCTAATGCT-TGTGTTTTTAGCGGCGTTTTTACAAAAG
*
103469254 CGTCGCTATTGCTCTGGT
65 CGCCGCTATTGCTCTGGT
*
103469272 TTTTAGCGGCGTTTTGCAAAAAGCGCCACTAATGCTCTGT-TTTTT-GCGGCGTTTTTTACTAAA
1 TTTTAGCGGCGTTTTGCAAAAAGCGCCGCTAATGCT-TGTGTTTTTAGCGGCG-TTTTTAC-AAA
103469335 A-CGCCGCTATTGCTCT-GT
63 AGCGCCGCTATTGCTCTGGT
* ** *
103469353 TTTTAGTGGCGTTTTGGTAAAA-CGCCGCTATTGCTATGTGTTTT
1 TTTTAGCGGCGTTTTGCAAAAAGCGCCGCTAATGCT-TGTGTTTT
103469397 ACAATTTTTG
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
80 14 0.13
81 31 0.28
82 61 0.55
83 4 0.04
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (82 bp):
TTTTAGCGGCGTTTTGCAAAAAGCGCCGCTAATGCTTGTGTTTTTAGCGGCGTTTTTACAAAAGC
GCCGCTATTGCTCTGGT
Found at i:103470587 original size:21 final size:21
Alignment explanation
Indices: 103470549--103470651 Score: 63
Period size: 21 Copynumber: 4.9 Consensus size: 21
103470539 TATATAAAAA
* *
103470549 GTATATATAATATT-TATTTTT
1 GTATAT-TATTATTATATTATT
103470570 GTATATTATTATTATATTATT
1 GTATATTATTATTATATTATT
* *
103470591 ATACATTATTA-TATATTATAT
1 GTATATTATTATTATATTAT-T
*
103470612 -TACATATATT-TTACTA-TATAT
1 GTATAT-TATTATTA-TATTAT-T
*
103470633 ATATATTATTATATATATT
1 GTATATTATTAT-TATATT
103470652 TTATTTATGA
Statistics
Matches: 68, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
20 19 0.28
21 37 0.54
22 9 0.13
23 3 0.04
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (21 bp):
GTATATTATTATTATATTATT
Found at i:103470590 original size:14 final size:15
Alignment explanation
Indices: 103470571--103470673 Score: 94
Period size: 14 Copynumber: 7.1 Consensus size: 15
103470561 TTTATTTTTG
103470571 TATATTATTATTATA
1 TATATTATTATTATA
*
103470586 T-TATTATACATTATTA
1 TATATTAT-TATTA-TA
*
103470602 TATATTA-TATTACA
1 TATATTATTATTATA
*
103470616 TATATT-TTACTATA
1 TATATTATTATTATA
103470630 TATATATATTATTATA
1 TATAT-TATTATTATA
103470646 TATATT-TTATT-TA
1 TATATTATTATTATA
103470659 TGA-ATT-TTATTATA
1 T-ATATTATTATTATA
103470673 T
1 T
103470674 GTACATATTT
Statistics
Matches: 74, Mismatches: 6, Indels: 17
0.76 0.06 0.18
Matches are distributed among these distances:
13 11 0.15
14 32 0.43
15 11 0.15
16 15 0.20
17 5 0.07
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (15 bp):
TATATTATTATTATA
Found at i:103470613 original size:30 final size:32
Alignment explanation
Indices: 103470571--103470655 Score: 97
Period size: 31 Copynumber: 2.7 Consensus size: 32
103470561 TTTATTTTTG
103470571 TATATTATTATTATATTATTATAC-AT-TATTA
1 TATATTATTATTATATTATTATACTATATA-TA
* *
103470602 TATATTA-TATTACATATATTTTACTATATATA
1 TATATTATTATTATAT-TATTATACTATATATA
103470634 TATATTATTATATATATT-TTAT
1 TATATTATTAT-TATATTATTAT
103470656 TTATGAATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
30 7 0.16
31 14 0.31
32 14 0.31
33 6 0.13
34 4 0.09
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.58
Consensus pattern (32 bp):
TATATTATTATTATATTATTATACTATATATA
Found at i:103470638 original size:18 final size:18
Alignment explanation
Indices: 103470550--103470650 Score: 75
Period size: 18 Copynumber: 5.5 Consensus size: 18
103470540 ATATAAAAAG
* *
103470550 TATATATAATATTTATTTT
1 TATATAT-ATATATATTAT
*
103470569 TGTATATTATTATTATATTAT
1 TATATA-TA-TA-TATATTAT
*
103470590 TATACAT-TAT-TATATAT
1 TATATATATATATAT-TAT
*
103470607 TATAT-TACATATATT-T
1 TATATATATATATATTAT
103470623 TACTATATATATATATTAT
1 TA-TATATATATATATTAT
103470642 TATATATAT
1 TATATATAT
103470651 TTTATTTATG
Statistics
Matches: 65, Mismatches: 8, Indels: 19
0.71 0.09 0.21
Matches are distributed among these distances:
16 7 0.11
17 14 0.22
18 21 0.32
19 9 0.14
20 4 0.06
21 10 0.15
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (18 bp):
TATATATATATATATTAT
Found at i:103470667 original size:13 final size:14
Alignment explanation
Indices: 103470638--103470674 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
103470628 TATATATATA
103470638 TTATTATAT-ATATT
1 TTATTATATGA-ATT
103470652 TTATT-TATGAATT
1 TTATTATATGAATT
103470665 TTATTATATG
1 TTATTATATG
103470675 TACATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (14 bp):
TTATTATATGAATT
Found at i:103479532 original size:27 final size:27
Alignment explanation
Indices: 103479497--103479608 Score: 140
Period size: 27 Copynumber: 4.1 Consensus size: 27
103479487 AGCATGGCTG
* *
103479497 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
103479523 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
103479551 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
103479578 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
103479605 CCAG
1 CCAG
103479609 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
26 5 0.07
27 55 0.72
28 16 0.21
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:103479588 original size:54 final size:54
Alignment explanation
Indices: 103479497--103479608 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
103479487 AGCATGGCTG
* *
103479497 CCAGAACAGATAATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
103479551 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
103479605 CCAG
1 CCAG
103479609 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:103485359 original size:20 final size:20
Alignment explanation
Indices: 103485336--103485373 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
103485326 TGATAAATGA
* *
103485336 ATACATATGTATTAATAAAT
1 ATACACATGTATAAATAAAT
103485356 ATACACATGTATAAATAA
1 ATACACATGTATAAATAA
103485374 TAAATATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
ATACACATGTATAAATAAAT
Found at i:103485473 original size:4 final size:4
Alignment explanation
Indices: 103485464--103485494 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
103485454 AGAACAGGGG
103485464 AGAA AGAA AGGAA AGAA AGAA AGAA AGAA AG
1 AGAA AGAA A-GAA AGAA AGAA AGAA AGAA AG
103485495 GGAGAAAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:103486612 original size:51 final size:51
Alignment explanation
Indices: 103486529--103486642 Score: 167
Period size: 51 Copynumber: 2.3 Consensus size: 51
103486519 AGTGTCGCCT
* * * *
103486529 TACTGTT-CTATTCCGGATTTGTTTCGAAGAGGTACTCCGTACCTTACTGT
1 TACTGTTACTGTTTCGGATTTGTTCCGAAGAGGTACTCCGTACCTTACTGC
* *
103486579 TACTGTTATTGTTTCGGATTTGTTCCGATGAGGTACTCCGTACCTTACTGC
1 TACTGTTACTGTTTCGGATTTGTTCCGAAGAGGTACTCCGTACCTTACTGC
103486630 TACTGTTACTGTT
1 TACTGTTACTGTT
103486643 ACCATTACGG
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
50 7 0.12
51 49 0.88
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.42
Consensus pattern (51 bp):
TACTGTTACTGTTTCGGATTTGTTCCGAAGAGGTACTCCGTACCTTACTGC
Done.