Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 318 of 352
Found at i:103486781 original size:18 final size:18
Alignment explanation
Indices: 103486758--103486801 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
103486748 TAAATAAAGG
*
103486758 TACTGAATAATTGATTGC
1 TACTGAATAATTGACTGC
* *
103486776 TACTGAATATTTGACTGT
1 TACTGAATAATTGACTGC
103486794 TACTGAAT
1 TACTGAAT
103486802 CACTGATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (18 bp):
TACTGAATAATTGACTGC
Found at i:103487501 original size:18 final size:17
Alignment explanation
Indices: 103487463--103487495 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
103487453 TAAAATGTGT
103487463 TTGG-ATTTGTTTAGTA
1 TTGGTATTTGTTTAGTA
103487479 TTGGTATTTGTATTAGT
1 TTGGTATTTGT-TTAGT
103487496 TGTGGTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 6 0.40
18 5 0.33
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.58
Consensus pattern (17 bp):
TTGGTATTTGTTTAGTA
Found at i:103496101 original size:131 final size:131
Alignment explanation
Indices: 103495866--103496183 Score: 405
Period size: 131 Copynumber: 2.5 Consensus size: 131
103495856 CTATTCATTC
* *
103495866 AAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATTGTG
1 AAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
* * *
103495931 CTAGGTTGCAATTTTCCGTTTGTTCAAAATAATCAAATAT-TCCTTTGGAATTTCACTCATGTCT
66 CTAGGTTACAATTTCCCGTTTGTTCAAAATAATCAAATATCT-CTTTAGAATTTCACTCATGTCT
103495995 TT
130 TT
* * * *
103495997 AAAAATTCTTCCAAACGAAGGTAGTGTTTGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
1 AAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
* *
103496062 CTGGGTTACAATTTCCCGTTTGTTCAAAATAATCGAATATCTCTTTAGAATTTCACTCATGTTCT
66 CTAGGTTACAATTTCCCGTTTGTTCAAAATAATCAAATATCTCTTTAGAATTTCACTCATG-TCT
*
103496127 CT
130 TT
* * * * * * *
103496129 --AAATTC-T-AAAA-TAAGGTAATGTTCGATGTCTAGAAATTTGAGGAATCGTGCCCTA
1 AAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTA
103496184 CTGTGCTGGG
Statistics
Matches: 164, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
127 36 0.22
128 3 0.02
129 1 0.01
130 6 0.04
131 113 0.69
132 5 0.03
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (131 bp):
AAAAATTCTTCAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
CTAGGTTACAATTTCCCGTTTGTTCAAAATAATCAAATATCTCTTTAGAATTTCACTCATGTCTT
T
Found at i:103500317 original size:9 final size:9
Alignment explanation
Indices: 103500286--103500329 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
103500276 AAAATGGGAG
103500286 AAAAAGAAA
1 AAAAAGAAA
* *
103500295 GAAGAAGAAT
1 -AAAAAGAAA
103500305 AAAAAGAAA
1 AAAAAGAAA
103500314 AAAAAGAAA
1 AAAAAGAAA
103500323 AGAAAAG
1 A-AAAAG
103500330 GAGAGGCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 17 0.59
10 12 0.41
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (9 bp):
AAAAAGAAA
Found at i:103500328 original size:19 final size:19
Alignment explanation
Indices: 103500286--103500329 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
103500276 AAAATGGGAG
* *
103500286 AAAAAGAAAGAAGAAGAAT
1 AAAAAGAAAGAAAAAGAAA
103500305 AAAAAGAAA-AAAAAGAAA
1 AAAAAGAAAGAAAAAGAAA
103500323 AGAAAAG
1 A-AAAAG
103500330 GAGAGGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (19 bp):
AAAAAGAAAGAAAAAGAAA
Found at i:103502643 original size:6 final size:6
Alignment explanation
Indices: 103502632--103502658 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
103502622 CCAGTGCATG
103502632 TTTTCT TTTTCT TTTTCT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTT
103502659 ATGATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:103512730 original size:26 final size:26
Alignment explanation
Indices: 103512701--103512782 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
103512691 TGATACAAAT
*
103512701 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
103512727 TGATAATGGATTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103512753 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103512779 TGAT
1 TGAT
103512783 TGGAATTTCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:103512884 original size:10 final size:10
Alignment explanation
Indices: 103512869--103512898 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
103512859 AGAACAAAGT
103512869 TTTGTCCATC
1 TTTGTCCATC
103512879 TTTGTCCATC
1 TTTGTCCATC
*
103512889 TTTGTTCATC
1 TTTGTCCATC
103512899 ATAGCCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.27, G:0.10, T:0.53
Consensus pattern (10 bp):
TTTGTCCATC
Found at i:103518533 original size:26 final size:26
Alignment explanation
Indices: 103518497--103518604 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
103518487 TGATACAAAT
*
103518497 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
103518523 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
103518549 TGATAATGGGTTTGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103518575 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
103518601 TGAT
1 TGAT
103518605 TGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:103520337 original size:13 final size:14
Alignment explanation
Indices: 103520321--103520356 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
103520311 CAATCTCATA
103520321 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
103520334 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
103520347 TCTC-ATTTCA
1 TCTCAATTTCA
103520357 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:103520346 original size:18 final size:19
Alignment explanation
Indices: 103520308--103520348 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
103520298 TGGTTCATGT
103520308 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
103520327 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
103520345 TTTC
1 TTTC
103520349 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:103520566 original size:15 final size:16
Alignment explanation
Indices: 103520534--103520590 Score: 73
Period size: 15 Copynumber: 3.7 Consensus size: 16
103520524 TCATATATAT
*
103520534 AATATATATTTCAATC
1 AATATAAATTTCAATC
103520550 AATATAAATTT-AATC
1 AATATAAATTTCAATC
* *
103520565 AAAAT-GATTTCAATC
1 AATATAAATTTCAATC
103520580 AATATAAATTT
1 AATATAAATTT
103520591 GATAAATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.12
15 16 0.47
16 14 0.41
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (16 bp):
AATATAAATTTCAATC
Found at i:103521952 original size:19 final size:19
Alignment explanation
Indices: 103521928--103521966 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
103521918 AATACTTATT
*
103521928 TATTATTTATACATGTGTA
1 TATTATTAATACATGTGTA
103521947 TATTATTAATACATGTGTA
1 TATTATTAATACATGTGTA
103521966 T
1 T
103521967 CTATTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (19 bp):
TATTATTAATACATGTGTA
Found at i:103521974 original size:19 final size:19
Alignment explanation
Indices: 103521931--103521974 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
103521921 ACTTATTTAT
103521931 TATTT-ATACATGTGTATA
1 TATTTAATACATGTGTATA
*
103521949 T-TATTAATACATGTGTATC
1 TAT-TTAATACATGTGTATA
103521968 TATTTAA
1 TATTTAA
103521975 AACCATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 1 0.05
18 3 0.14
19 17 0.77
20 1 0.05
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (19 bp):
TATTTAATACATGTGTATA
Found at i:103532546 original size:9 final size:9
Alignment explanation
Indices: 103532532--103532566 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
103532522 TGATGTTGAA
103532532 TTTCTTTTT
1 TTTCTTTTT
103532541 TTTC-TTTT
1 TTTCTTTTT
103532549 TTTCTTTTT
1 TTTCTTTTT
103532558 TTGTCTTTT
1 TT-TCTTTT
103532567 AGCAAATTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.33
9 10 0.42
10 6 0.25
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.86
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:103532554 original size:17 final size:18
Alignment explanation
Indices: 103532532--103532566 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
103532522 TGATGTTGAA
103532532 TTTCTTTTTTT-TCTTTT
1 TTTCTTTTTTTGTCTTTT
103532549 TTTCTTTTTTTGTCTTTT
1 TTTCTTTTTTTGTCTTTT
103532567 AGCAAATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.86
Consensus pattern (18 bp):
TTTCTTTTTTTGTCTTTT
Found at i:103536254 original size:21 final size:20
Alignment explanation
Indices: 103536220--103536259 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
103536210 GCACCAAAGT
*
103536220 AGTGACAAAACAACAAAAAC
1 AGTGAAAAAACAACAAAAAC
103536240 AGTGAAAACAACAACAAAAA
1 AGTGAAAA-AACAACAAAAA
103536260 GTAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.68, C:0.17, G:0.10, T:0.05
Consensus pattern (20 bp):
AGTGAAAAAACAACAAAAAC
Found at i:103537800 original size:23 final size:23
Alignment explanation
Indices: 103537770--103537816 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
103537760 TAATTAATTA
103537770 ATTTAAATAATAGTTATCGTAAT
1 ATTTAAATAATAGTTATCGTAAT
* * *
103537793 ATTTAAATCATATTTATCTTAAT
1 ATTTAAATAATAGTTATCGTAAT
103537816 A
1 A
103537817 ATAAATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (23 bp):
ATTTAAATAATAGTTATCGTAAT
Found at i:103541989 original size:47 final size:47
Alignment explanation
Indices: 103541856--103542026 Score: 175
Period size: 47 Copynumber: 3.6 Consensus size: 47
103541846 ATAGTAAAAC
* * * *
103541856 TATGGTCTTGCACA-TAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTACACAGTAG-CACATATCAC--ACCGATGCCATATCCCAGA
* * * *
103541905 CATGGTCTTACAC-GGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* * *
103541951 TATGGTCTTATACAGTAGCACATATCACACGGATGCCATATCCCGGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* * *
103541998 TATGGTCTTATACGGAAGCACATATCACA
1 TATGGTCTTACACAGTAGCACATATCACA
103542027 TTTCTCCGAA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
46 26 0.25
47 56 0.54
48 10 0.10
49 12 0.12
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (47 bp):
TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
Found at i:103556002 original size:10 final size:8
Alignment explanation
Indices: 103555978--103556004 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
103555968 ATCACCCATT
103555978 TCAATATA
1 TCAATATA
103555986 TCAATATA
1 TCAATATA
103555994 TCAATATA
1 TCAATATA
103556002 TCA
1 TCA
103556005 TGTGTCATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (8 bp):
TCAATATA
Found at i:103556687 original size:28 final size:28
Alignment explanation
Indices: 103556654--103556711 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
103556644 GTTTTGAAAG
* *
103556654 AAAGCAAATTTAGAAAATTGATTTGGGT
1 AAAGCAAATTTAAAAAATTAATTTGGGT
103556682 AAAGCAAATTTAAAAAATTAATTTGGGT
1 AAAGCAAATTTAAAAAATTAATTTGGGT
103556710 AA
1 AA
103556712 CTATGCCCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.48, C:0.03, G:0.17, T:0.31
Consensus pattern (28 bp):
AAAGCAAATTTAAAAAATTAATTTGGGT
Found at i:103558519 original size:44 final size:44
Alignment explanation
Indices: 103558445--103558577 Score: 135
Period size: 44 Copynumber: 3.0 Consensus size: 44
103558435 TACTATAGCG
* ** *
103558445 AATCTTATCTCCCTGTAGTTGTAGTGGAGCA-GATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTACAGTAGAGCAGGA-TGAAGCTACA
*
103558489 AATCTTATCTCCTTGAAGTTACAGTAGAGCAGGATGAAGCTACA
1 AATCTTATCTCCCTGAAGTTACAGTAGAGCAGGATGAAGCTACA
* * * * **
103558533 ATTCATATATCCCTAAAGTTACAGT-GAGTTGGAATGAAGCTACA
1 AATCTTATCTCCCTGAAGTTACAGTAGAGCAGG-ATGAAGCTACA
103558577 A
1 A
103558578 CTACAAATCC
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
43 5 0.07
44 68 0.91
45 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTACAGTAGAGCAGGATGAAGCTACA
Found at i:103558676 original size:94 final size:93
Alignment explanation
Indices: 103558578--103558959 Score: 382
Period size: 94 Copynumber: 4.1 Consensus size: 93
103558568 GAAGCTACAA
* * * ** *
103558578 CTACAAATCCTATACCCTTGAAGTTGCAGTGGGTTAGATTGAATTTGTTATAGAGAATTTTATCT
1 CTACAAATCC-ACACCCTTGAAGTTGCAGTGGGTTGGATTGAATCTACTATAGAGAATCTTATCT
* *
103558643 TCCTGGAGTTGCAGTGGAGTAGATTGAAG
65 CCCTGAAGTTGCAGTGGAGTAGATTGAAG
* ** *
103558672 CTACAAAT-CATGCACCCTTGAAATTGCAGTGAATTGGATTGAATCTACCATAGTA-AATCTTAT
1 CTACAAATCCA--CACCCTTGAAGTTGCAGTGGGTTGGATTGAATCTACTATAG-AGAATCTTAT
* *
103558735 CTCCCTGAAGTTGTAGTGGAGAAGATTGAAG
63 CTCCCTGAAGTTGCAGTGGAGTAGATTGAAG
* * * *
103558766 CTACAAATCCA-ACCCCTGAAGTTGCAGTGGGTTTGAATGGAA-CTACGATA-ACGAATCTTATC
1 CTACAAATCCACACCCTTGAAGTTGCAGTGGG-TTGGATTGAATCTACTATAGA-GAATCTTATC
* * * * *
103558828 TCCCTGAATTTGCAGTGGAGCAAAATAAAG
64 TCCCTGAAGTTGCAGTGGAGTAGATTGAAG
* * * *
103558858 CTATAGATCC-CACCCTCTGAAGTTGCAGTGGGATGGATTGAATCTACTATAGTGAATCTTATCT
1 CTACAAATCCACACCCT-TGAAGTTGCAGTGGGTTGGATTGAATCTACTATAGAGAATCTTATCT
*
103558922 CTCTGAAGTTGCAGTGGAGT-GTATTGAAG
65 CCCTGAAGTTGCAGTGGAGTAG-ATTGAAG
*
103558951 CTATAAATC
1 CTACAAATC
103558960 TTATCTCCCT
Statistics
Matches: 234, Mismatches: 42, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
90 1 0.00
92 76 0.32
93 72 0.31
94 82 0.35
95 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (93 bp):
CTACAAATCCACACCCTTGAAGTTGCAGTGGGTTGGATTGAATCTACTATAGAGAATCTTATCTC
CCTGAAGTTGCAGTGGAGTAGATTGAAG
Found at i:103558928 original size:93 final size:91
Alignment explanation
Indices: 103558591--103558959 Score: 346
Period size: 93 Copynumber: 4.0 Consensus size: 91
103558581 CAAATCCTAT
* * * ** * * * *
103558591 ACCCTTGAAGTTGCAGTGGGTTAGATTGAATTTGTTATAGAGAATTTTATCTTCCTGGAGTTGCA
1 ACCCTTGAAGTTGCAGTGGGATGGATTGAATCTACTATAGTGAATCTTATCTCCCTGAAGTTGCA
* *
103558656 GTGGAGTAGATTGAAGCTACAAATCATGC
66 GTGGAG-AAATTGAAGCTACAAATC--CC
* * * * *
103558685 ACCCTTGAAATTGCAGT-GAATTGGATTGAATCTACCATAGTAAATCTTATCTCCCTGAAGTTGT
1 ACCCTTGAAGTTGCAGTGGGA-TGGATTGAATCTACTATAGTGAATCTTATCTCCCTGAAGTTGC
*
103558749 AGTGGAGAAGATTGAAGCTACAAATCCA
65 AGTGGAGAA-ATTGAAGCTACAAATCCC
* * * * * ** *
103558777 ACCCCTGAAGTTGCAGTGGGTTTGAATGGAA-CTACGATAACGAATCTTATCTCCCTGAATTTGC
1 ACCCTTGAAGTTGCAGTGGG-ATGGATTGAATCTACTATAGTGAATCTTATCTCCCTGAAGTTGC
* * * *
103558841 AGTGGAGCAAAATAAAGCTATAGATCCC
65 AGTGGAG-AAATTGAAGCTACAAATCCC
*
103558869 ACCCTCTGAAGTTGCAGTGGGATGGATTGAATCTACTATAGTGAATCTTATCTCTCTGAAGTTGC
1 ACCCT-TGAAGTTGCAGTGGGATGGATTGAATCTACTATAGTGAATCTTATCTCCCTGAAGTTGC
** *
103558934 AGTGGAGTGTATTGAAGCTATAAATC
65 AGTGGAG-AAATTGAAGCTACAAATC
103558960 TTATCTCCCT
Statistics
Matches: 219, Mismatches: 49, Indels: 15
0.77 0.17 0.05
Matches are distributed among these distances:
92 73 0.33
93 75 0.34
94 71 0.32
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (91 bp):
ACCCTTGAAGTTGCAGTGGGATGGATTGAATCTACTATAGTGAATCTTATCTCCCTGAAGTTGCA
GTGGAGAAATTGAAGCTACAAATCCC
Found at i:103558972 original size:44 final size:44
Alignment explanation
Indices: 103558725--103559026 Score: 138
Period size: 44 Copynumber: 6.7 Consensus size: 44
103558715 TCTACCATAG
* *
103558725 TAAATCTTATCTCCCTGAAGTTGTAGTGGAGAAGATTGAAGCTA
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAGATGATTGAAGCTA
* * * * *
103558769 CAAATC-CAAC-CCCTGAAGTTGCAGTGG-GTTTGAATGGAA-CTACGA
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAG-ATG-ATTGAAGCT---A
* * * *
103558814 TAACGAATCTTATCTCCCTGAATTTGCAGTGGAGCA-AAATAAAGCTA
1 T-A--AATCTTATCTCCCTGAAGTTGCAGTGGAG-ATGATTGAAGCTA
* ** *
103558861 TAGATCCCA-C-CCTCTGAAGTTGCAGTGG-GATGGATTGAATCTACTA
1 TAAATCTTATCTCC-CTGAAGTTGCAGTGGAGAT-GATTGAA---GCTA
*
103558907 TAGTGAATCTTATCTCTCTGAAGTTGCAGTGGAG-TGTATTGAAGCTA
1 TA---AATCTTATCTCCCTGAAGTTGCAGTGGAGATG-ATTGAAGCTA
* * * *
103558954 TAAATCTTATCTCCCTGAAGCTGTAGTAGAGCA-GATTGAAGCTC
1 TAAATCTTATCTCCCTGAAGTTGCAGTGGAG-ATGATTGAAGCTA
* * * * *
103558998 CAATTCCTATATCCTTGAAGTTGCAGTGG
1 TAAATCTTATCTCCCTGAAGTTGCAGTGG
103559027 GTTAGAATGA
Statistics
Matches: 188, Mismatches: 43, Indels: 54
0.66 0.15 0.19
Matches are distributed among these distances:
41 2 0.01
42 22 0.12
43 26 0.14
44 64 0.34
45 2 0.01
46 7 0.04
47 7 0.04
48 4 0.02
49 10 0.05
50 41 0.22
51 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (44 bp):
TAAATCTTATCTCCCTGAAGTTGCAGTGGAGATGATTGAAGCTA
Found at i:103566193 original size:12 final size:12
Alignment explanation
Indices: 103566173--103566206 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
103566163 ACATAATTAA
103566173 AAAATAAATAAT
1 AAAATAAATAAT
* *
103566185 TATATAAATAAT
1 AAAATAAATAAT
103566197 AAAATAAATA
1 AAAATAAATA
103566207 TAATAGCATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAATAAATAAT
Found at i:103567683 original size:30 final size:31
Alignment explanation
Indices: 103567634--103567702 Score: 122
Period size: 30 Copynumber: 2.3 Consensus size: 31
103567624 TATTACGAAT
*
103567634 GTGGTTAATTATGGGACTTAGTGGGATGTGG
1 GTGGTTAATTATGGGACTTAATGGGATGTGG
103567665 GTGGTTAATTAT-GGACTTAATGGGATGTGG
1 GTGGTTAATTATGGGACTTAATGGGATGTGG
103567695 GTGGTTAA
1 GTGGTTAA
103567703 GAAATTATCC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 25 0.68
31 12 0.32
ACGTcount: A:0.22, C:0.03, G:0.39, T:0.36
Consensus pattern (31 bp):
GTGGTTAATTATGGGACTTAATGGGATGTGG
Found at i:103568735 original size:18 final size:19
Alignment explanation
Indices: 103568712--103568769 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 19
103568702 ATATTTTATA
103568712 ATTATTAATTAGATAA-AT
1 ATTATTAATTAGATAATAT
103568730 ATTATT--TTA-ATAATAT
1 ATTATTAATTAGATAATAT
* * *
103568746 ATT-TTAATAAGATATTTT
1 ATTATTAATTAGATAATAT
103568764 ATTATT
1 ATTATT
103568770 TTATTATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
15 6 0.19
16 8 0.25
17 2 0.06
18 14 0.44
19 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTATTAATTAGATAATAT
Found at i:103568742 original size:15 final size:15
Alignment explanation
Indices: 103568703--103568761 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
103568693 ATGTTGATGA
*
103568703 TATTTT-ATAATTAT
1 TATTTTAATAAATAT
*
103568717 TA-ATTAGATAAATAT
1 TATTTTA-ATAAATAT
103568732 TATTTTAAT-AATA-
1 TATTTTAATAAATAT
103568745 TATTTTAATAAGATAT
1 TATTTTAATAA-ATAT
103568761 T
1 T
103568762 TTATTATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
13 11 0.31
14 7 0.19
15 14 0.39
16 4 0.11
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
TATTTTAATAAATAT
Found at i:103568750 original size:13 final size:13
Alignment explanation
Indices: 103568727--103568764 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
103568717 TAATTAGATA
103568727 AATATTATTTTAAT
1 AATA-TATTTTAAT
103568741 AATATATTTTAAT
1 AATATATTTTAAT
*
103568754 AAGATATTTTA
1 AATATATTTTA
103568765 TTATTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 19 0.83
14 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (13 bp):
AATATATTTTAAT
Found at i:103568760 original size:29 final size:28
Alignment explanation
Indices: 103568703--103568778 Score: 70
Period size: 29 Copynumber: 2.7 Consensus size: 28
103568693 ATGTTGATGA
103568703 TATTTTATAATTATTAATTAGATAAATAT
1 TATTTTATAATTATT-ATTAGATAAATAT
103568732 TATTTTAATAATATATT-TTA-ATAAGATAT
1 TATTTT-ATAAT-TATTATTAGATAA-ATAT
*
103568761 T-TTATTAT-TTTATTATTA
1 TATT-TTATAATTATTATTA
103568779 TTTATTAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
26 4 0.10
27 4 0.10
28 8 0.20
29 16 0.39
30 5 0.12
31 4 0.10
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (28 bp):
TATTTTATAATTATTATTAGATAAATAT
Found at i:103570786 original size:44 final size:44
Alignment explanation
Indices: 103570731--103570832 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 44
103570721 AAATTGTAGT
* *
103570731 GGAGCAGATTGAAGTCACACATCTCATCTCCTTAAAGTTACAGA
1 GGAGTAGATTGAAGTCACACATCTCATCTCCCTAAAGTTACAGA
* * * * * *
103570775 GGAGTAGATTGAAGTTACAGATCTTATCTCCCTGAAGTTGCAGT
1 GGAGTAGATTGAAGTCACACATCTCATCTCCCTAAAGTTACAGA
* *
103570819 GGAATAGATCGAAG
1 GGAGTAGATTGAAG
103570833 AATAGCAAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (44 bp):
GGAGTAGATTGAAGTCACACATCTCATCTCCCTAAAGTTACAGA
Found at i:103570892 original size:90 final size:88
Alignment explanation
Indices: 103570798--103570975 Score: 232
Period size: 90 Copynumber: 2.0 Consensus size: 88
103570788 GTTACAGATC
* *
103570798 TTATCTCCCTGAAGTTGCAGTGGAATAGA-TCGAAGAATAGCAAACCTTATCCCCCTGAAGTTGC
1 TTATCTCCCTGAAATTGCAGTGGAACAGACT-GAA-AATAGCAAACCTTATCCCCCTGAAGTTG-
* *
103570862 AGTGGAGCAGGTTAAAGTTACAAGTT
63 AGTGGAACAGGTTAAAGCTACAAGTT
** * **
103570888 TTATCTCCCTGAAATTGCAGTGGGGCAGACTGAAAATAGCAAATCTTATTTCCCTGAAGTTGAGT
1 TTATCTCCCTGAAATTGCAGTGGAACAGACTGAAAATAGCAAACCTTATCCCCCTGAAGTTGAGT
*
103570953 GGAACAGGTTAAAGCTACGAGTT
66 GGAACAGGTTAAAGCTACAAGTT
103570976 ACAAGTCCTA
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
88 23 0.30
89 25 0.32
90 28 0.36
91 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (88 bp):
TTATCTCCCTGAAATTGCAGTGGAACAGACTGAAAATAGCAAACCTTATCCCCCTGAAGTTGAGT
GGAACAGGTTAAAGCTACAAGTT
Found at i:103574999 original size:12 final size:12
Alignment explanation
Indices: 103574982--103575007 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
103574972 TAATTTTCCC
103574982 TTTCTCCTTTCT
1 TTTCTCCTTTCT
103574994 TTTCTCCTTTCT
1 TTTCTCCTTTCT
103575006 TT
1 TT
103575008 CTTTCTTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTCTCCTTTCT
Found at i:103575013 original size:20 final size:18
Alignment explanation
Indices: 103574975--103575019 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
103574965 CAAACCTTAA
103574975 TTTTCCCTTTCTCCTTTC
1 TTTTCCCTTTCTCCTTTC
*
103574993 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TCCTTTC
103575013 -TTTCCCT
1 TTTTCCCT
103575020 GCTTTTCGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.33
19 10 0.42
20 6 0.25
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTCCCTTTCTCCTTTC
Found at i:103575257 original size:20 final size:20
Alignment explanation
Indices: 103575234--103575271 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
103575224 TAATTATTTC
103575234 ATTAATAAATATCTTTTATA
1 ATTAATAAATATCTTTTATA
103575254 ATTAATAAATATCTTTTA
1 ATTAATAAATATCTTTTA
103575272 ATACTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTAATAAATATCTTTTATA
Found at i:103578814 original size:22 final size:22
Alignment explanation
Indices: 103578784--103578865 Score: 76
Period size: 22 Copynumber: 3.5 Consensus size: 22
103578774 TTATTATTAA
*
103578784 AAATGATTTAATAATAAATAAT
1 AAATAATTTAATAATAAATAAT
* *
103578806 AAATAATTTAATCATAATTATTATT
1 AAATAATTTAATAATAA--A-TAAT
103578831 GAATATAATTTAATAA-AAATAAT
1 -AA-ATAATTTAATAATAAATAAT
*
103578854 ATATAATTTAAT
1 AAATAATTTAAT
103578866 TTTATATTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
21 10 0.20
22 16 0.33
23 3 0.06
24 2 0.04
25 3 0.06
26 4 0.08
27 11 0.22
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.41
Consensus pattern (22 bp):
AAATAATTTAATAATAAATAAT
Found at i:103578828 original size:49 final size:48
Alignment explanation
Indices: 103578773--103578865 Score: 141
Period size: 49 Copynumber: 1.9 Consensus size: 48
103578763 TTTTAATAGG
*
103578773 ATTATTATTAAAAATGATTTAATAATAAATAATAAATAATTTAATCATA
1 ATTATTATTAAAAATAATTTAATAA-AAATAATAAATAATTTAATCATA
* * *
103578822 ATTATTATTGAATATAATTTAATAAAAATAATATATAATTTAAT
1 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAAT
103578866 TTTATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
48 18 0.45
49 22 0.55
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.43
Consensus pattern (48 bp):
ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATCATA
Found at i:103585828 original size:24 final size:23
Alignment explanation
Indices: 103585766--103585832 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 23
103585756 TAAGTTATGT
103585766 ATAATAATATAATATGAATAAAATA
1 ATAATAATATAATA--AATAAAATA
**
103585791 AGGA-AATAT-A-AAATAATAATA
1 ATAATAATATAATAAATAA-AATA
103585812 ATAATAATATAATAAATAAAA
1 ATAATAATATAATAAATAAAA
103585833 GTATGGTAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
20 5 0.15
21 6 0.18
22 6 0.18
23 4 0.12
24 11 0.32
25 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (23 bp):
ATAATAATATAATAAATAAAATA
Found at i:103588263 original size:18 final size:18
Alignment explanation
Indices: 103588240--103588277 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
103588230 AAACAGCTAC
*
103588240 GTATTGGAGTGGAAACCA
1 GTATTGGAGTGCAAACCA
103588258 GTATTGGAGTGCAAACCA
1 GTATTGGAGTGCAAACCA
103588276 GT
1 GT
103588278 TAGATCAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.13, G:0.32, T:0.24
Consensus pattern (18 bp):
GTATTGGAGTGCAAACCA
Found at i:103588978 original size:87 final size:88
Alignment explanation
Indices: 103588832--103589053 Score: 290
Period size: 87 Copynumber: 2.5 Consensus size: 88
103588822 TAAAAGGTAT
* *
103588832 AAAAA-GCTCTCAAACTTTTTCAAAAAACCAATTAAGCCTCT-TTTTTTTTTTACACTCAATTGA
1 AAAAAGGCTCTCAAACTTTTTCAAAAAA-CAATTAAGCCCCTCTCTTTTTTTTACACTCAATTGA
*
103588895 GCACTTGAACTTTCAAAGTGCATC
65 GCACTTGAACTTTCAAAATGCATC
* * *
103588919 AAAAAGGCCCTCAAACTTCTTCAAAAAA-AATTAAGCCCCTGCTCTTTTTTTT-CACTCAATTGG
1 AAAAAGGCTCTCAAACTTTTTCAAAAAACAATTAAGCCCCT-CTCTTTTTTTTACACTCAATTGA
*
103588982 GTACTTGAACTTTCAAAATGCATC
65 GCACTTGAACTTTCAAAATGCATC
* * *
103589006 AAAAAGACTCTCAAAATTTTTGAAAAAAGCAATTAAGCCCCTACTCTT
1 AAAAAGGCTCTCAAACTTTTTCAAAAAA-CAATTAAGCCCCT-CTCTT
103589054 ATTAAAAATT
Statistics
Matches: 117, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
86 11 0.09
87 60 0.51
88 29 0.25
89 17 0.15
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (88 bp):
AAAAAGGCTCTCAAACTTTTTCAAAAAACAATTAAGCCCCTCTCTTTTTTTTACACTCAATTGAG
CACTTGAACTTTCAAAATGCATC
Found at i:103589167 original size:36 final size:36
Alignment explanation
Indices: 103589067--103589177 Score: 136
Period size: 36 Copynumber: 3.0 Consensus size: 36
103589057 AAAAATTAGG
* *
103589067 AAAAATTTATTAAATTTTAATAAAAAT-ATAAAAGAT
1 AAAAATTTATAAAATTTT-ATAAAAATAATAAAAAAT
103589103 -AAAATTTATTAAAAAATTTTTATAAAAATAATAAAAAAT
1 AAAAATTTA-T--AAAA-TTTTATAAAAATAATAAAAAAT
*
103589142 AAAAATTTGTAAAATTTTATAAAAATAATAAAAAAT
1 AAAAATTTATAAAATTTTATAAAAATAATAAAAAAT
103589178 TTAACGATCC
Statistics
Matches: 66, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
35 8 0.12
36 23 0.35
37 4 0.06
38 11 0.17
39 13 0.20
40 7 0.11
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (36 bp):
AAAAATTTATAAAATTTTATAAAAATAATAAAAAAT
Found at i:103589413 original size:19 final size:19
Alignment explanation
Indices: 103589389--103589449 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
103589379 CTTTATAAAG
*
103589389 TTTTATATTTTTTTATTAT
1 TTTTATATTTTTTTATAAT
*** *
103589408 TTTTATAAAATTTTACAAT
1 TTTTATATTTTTTTATAAT
* *
103589427 TTTTATCTTTTTTTATGAT
1 TTTTATATTTTTTTATAAT
103589446 TTTT
1 TTTT
103589450 GTGTTTTTCT
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTATATTTTTTTATAAT
Found at i:103589439 original size:29 final size:29
Alignment explanation
Indices: 103589380--103589442 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
103589370 TTGTTACGAC
* * *
103589380 TTTATAAAGTTTTATATTTTTTTATTATT
1 TTTATAAAATTTTACATATTTTTATTATT
*
103589409 TTTATAAAATTTTACA-ATTTTTATCTTTT
1 TTTATAAAATTTTACATATTTTTAT-TATT
103589438 TTTAT
1 TTTAT
103589443 GATTTTTGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.67
Consensus pattern (29 bp):
TTTATAAAATTTTACATATTTTTATTATT
Found at i:103590700 original size:17 final size:15
Alignment explanation
Indices: 103590664--103590693 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
103590654 ATCAATTTAC
*
103590664 AAATTATAAAAATAT
1 AAATTATAAAAAAAT
103590679 AAATTATAAAAAAAT
1 AAATTATAAAAAAAT
103590694 TAAAATTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATTATAAAAAAAT
Found at i:103592552 original size:20 final size:20
Alignment explanation
Indices: 103592529--103592577 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
103592519 TTAAATTCTA
* *
103592529 AAAGATAAATATAAATAATT
1 AAAGATAAATAAAAATAAAT
*
103592549 AAAGATAATTAAAAATAAAT
1 AAAGATAAATAAAAATAAAT
*
103592569 GAAGATAAA
1 AAAGATAAA
103592578 AGCTAAAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.24
Consensus pattern (20 bp):
AAAGATAAATAAAAATAAAT
Found at i:103595623 original size:26 final size:25
Alignment explanation
Indices: 103595594--103595652 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 25
103595584 AACAATAGTA
103595594 AAATAAT-GATATTAATACCTAAATAT
1 AAATAATAGATA-TAATACCTAAA-AT
103595620 AAAT-ATAGATATAATACCTAAAAT
1 AAATAATAGATATAATACCTAAAAT
103595644 ATAATAATA
1 A-AATAATA
103595653 ATGAATGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
24 3 0.10
25 16 0.53
26 11 0.37
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.32
Consensus pattern (25 bp):
AAATAATAGATATAATACCTAAAAT
Found at i:103596041 original size:19 final size:19
Alignment explanation
Indices: 103596013--103596074 Score: 97
Period size: 19 Copynumber: 3.2 Consensus size: 19
103596003 AATCTTTAAG
*
103596013 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
103596032 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
103596051 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
103596072 GAT
1 GAT
103596075 CTTGTAATCT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 31 0.77
21 9 0.22
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:103597490 original size:21 final size:22
Alignment explanation
Indices: 103597452--103597492 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
103597442 CTCCTGTTTT
* *
103597452 CATTTTTCTTAAAGTCGATTCC
1 CATTTTTCTAAAACTCGATTCC
103597474 CATTTTTC-AAAACTCGATT
1 CATTTTTCTAAAACTCGATT
103597493 TAAAAATAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (22 bp):
CATTTTTCTAAAACTCGATTCC
Found at i:103597522 original size:3 final size:3
Alignment explanation
Indices: 103597514--103597870 Score: 161
Period size: 3 Copynumber: 117.3 Consensus size: 3
103597504 TCGACGGTAG
* * * * *
103597514 TAA TAA TAA TGA TAA TAAA TAT TAG CAG TAA -AA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * * *
103597559 TGA TAG TCA TAA TAA TGA TAA TGA CAA CAAA TAA TAA TAG TAGGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TA--A TAA
* * *
103597607 TAA TGA TAA TATA TAA -AA TAA TAA TAA TAG TAA -AA AAGA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
* * * * ** ** * *
103597652 GAA TAG TAG CAA TAA TAA TGG TAA TAA CGA TAA TAAA TAA TAG TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
* * * *
103597698 TAAA TAA TAA AAA TAA TAA TAG TAA TAA TAA TAA TGA TAA TAG TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
103597744 TAGA AAA TAAA TAA TAA TAA T-A TAG TAA TAG TAA TAG CAA TAA AAA
1 TA-A TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * ** *
103597790 TAA AAA TAA TAG TAA TAA TAA TGG TAA TAA GAAA TAGA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TA-A TAA TAA TAA
* * *
103597836 CAA TAA T-A TAA -AA AAA GAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
103597871 GTTAGACAAA
Statistics
Matches: 258, Mismatches: 77, Indels: 38
0.69 0.21 0.10
Matches are distributed among these distances:
2 13 0.05
3 220 0.85
4 23 0.09
5 2 0.01
ACGTcount: A:0.61, C:0.02, G:0.10, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:103597842 original size:25 final size:24
Alignment explanation
Indices: 103597814--103597869 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
103597804 ATAATAATGG
* *
103597814 TAATAAGAAATAGAAATAATAACAA
1 TAATAAAAAAAAG-AATAATAACAA
*
103597839 TAATATAAAAAAAGAATAATAATAA
1 TAATA-AAAAAAAGAATAATAACAA
103597864 TAATAA
1 TAATAA
103597870 TGTTAGACAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.04
25 20 0.74
26 6 0.22
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (24 bp):
TAATAAAAAAAAGAATAATAACAA
Found at i:103606118 original size:20 final size:20
Alignment explanation
Indices: 103606093--103606132 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
103606083 TTAGCAAACT
103606093 TTTAATTATAATATAATATA
1 TTTAATTATAATATAATATA
* *
103606113 TTTAATTATCATATTATATA
1 TTTAATTATAATATAATATA
103606133 AGTCTTGAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTAATTATAATATAATATA
Found at i:103606241 original size:25 final size:25
Alignment explanation
Indices: 103606221--103606271 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
103606211 TGTATATATT
103606221 ATAA-ATTATATAATATATATAAAA
1 ATAATATTATATAATATATATAAAA
103606245 ATAATATTATATAATATAT-TAAAA
1 ATAATATTATATAATATATATAAAA
103606269 ATA
1 ATA
103606272 TAAAAACAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 12 0.46
25 14 0.54
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (25 bp):
ATAATATTATATAATATATATAAAA
Found at i:103606252 original size:32 final size:32
Alignment explanation
Indices: 103606216--103606277 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 32
103606206 ATTTGTGTAT
*
103606216 ATATTATA-AAT-TATATAATATATATAAAAATA
1 ATATTATATAATATAT-TAA-AAATATAAAAATA
103606248 ATATTATATAATATATTAAAAATATAAAAA
1 ATATTATATAATATATTAAAAATATAAAAA
103606278 CAGATCGGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
32 18 0.67
33 6 0.22
34 3 0.11
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (32 bp):
ATATTATATAATATATTAAAAATATAAAAATA
Found at i:103614301 original size:15 final size:15
Alignment explanation
Indices: 103614277--103614312 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
103614267 TTCATAAGTA
*
103614277 TACCTCGATTCAACT
1 TACCTAGATTCAACT
103614292 TACCTAGATTCAACT
1 TACCTAGATTCAACT
*
103614307 TGCCTA
1 TACCTA
103614313 ATAAATACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (15 bp):
TACCTAGATTCAACT
Found at i:103618550 original size:23 final size:24
Alignment explanation
Indices: 103618507--103618558 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
103618497 AACAAATACT
* *
103618507 TATTTTATAGTATTAAAATATTCA
1 TATTTTATACTATTAAAATATTAA
103618531 TATTTTATACTA-TAAAATATTAA
1 TATTTTATACTATTAAAATATTAA
103618554 TATTT
1 TATTT
103618559 GAATTTGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 15 0.58
24 11 0.42
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (24 bp):
TATTTTATACTATTAAAATATTAA
Found at i:103619268 original size:15 final size:15
Alignment explanation
Indices: 103619248--103619280 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
103619238 AATTTTTAAC
103619248 AATAAAAATAAATGA
1 AATAAAAATAAATGA
103619263 AATAAAAATAAATGA
1 AATAAAAATAAATGA
103619278 AAT
1 AAT
103619281 GTTTAGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (15 bp):
AATAAAAATAAATGA
Found at i:103627614 original size:19 final size:19
Alignment explanation
Indices: 103627592--103627629 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
103627582 ATTATTTTTG
*
103627592 GATTAAAAAATTTAAAAAT
1 GATTAAAAAATCTAAAAAT
*
103627611 GATTTAAAAATCTAAAAAT
1 GATTAAAAAATCTAAAAAT
103627630 AATAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.32
Consensus pattern (19 bp):
GATTAAAAAATCTAAAAAT
Found at i:103629106 original size:16 final size:15
Alignment explanation
Indices: 103629085--103629132 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
103629075 GATGTGAATA
103629085 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
103629101 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
103629116 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
103629132 A
1 A
103629133 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:103629108 original size:24 final size:24
Alignment explanation
Indices: 103629081--103629136 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
103629071 TAATGATGTG
*
103629081 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
103629105 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
103629129 AATAATAA
1 AATAATAA
103629137 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:103629115 original size:8 final size:8
Alignment explanation
Indices: 103629081--103629132 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
103629071 TAATGATGTG
*
103629081 AATAATAA
1 AATATTAA
103629089 AATATATAA
1 AATAT-TAA
103629098 AATA-TAA
1 AATATTAA
103629105 AATATTAA
1 AATATTAA
*
103629113 AATATCAA
1 AATATTAA
*
103629121 AATATTAG
1 AATATTAA
103629129 AATA
1 AATA
103629133 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:103629355 original size:22 final size:24
Alignment explanation
Indices: 103629292--103629356 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
103629282 CGTGATAATA
*
103629292 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
103629317 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
103629340 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
103629357 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:103629402 original size:25 final size:25
Alignment explanation
Indices: 103629286--103629503 Score: 120
Period size: 23 Copynumber: 9.0 Consensus size: 25
103629276 TAAATACGTG
* *
103629286 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
103629311 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
103629336 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * *
103629358 ATAACATGTAAAAAATATATATAAATAAT
1 ATAATAT-T---AAAGATATATACATAAT
*
103629387 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * *
103629412 ATAGTA-T-AATATATATACGTAAT
1 ATAATATTAAAGATATATACATAAT
* *
103629435 ATAGA-ATTTAA-A-ATATACCTAAT
1 ATA-ATATTAAAGATATATACATAAT
* *
103629458 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
*
103629480 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
103629503 A
1 A
103629504 ACAAAAAAAG
Statistics
Matches: 151, Mismatches: 27, Indels: 32
0.72 0.13 0.15
Matches are distributed among these distances:
21 4 0.03
22 27 0.18
23 45 0.30
24 10 0.07
25 45 0.30
28 1 0.01
29 19 0.13
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:103629404 original size:29 final size:29
Alignment explanation
Indices: 103629345--103629423 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
103629335 TATAGTTAAG
* * *
103629345 ATATATACATAAGATAACATGTAAAAAAT
1 ATATATAAATAATATAATATGTAAAAAAT
*
103629374 ATATATAAATAATATAATAT-TAAAGATAT
1 ATATATAAATAATATAATATGTAAA-AAAT
* *
103629403 ATACATAAAATAGTATAATAT
1 ATATAT-AAATAATATAATAT
103629424 ATATACGTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 4 0.10
29 25 0.60
30 13 0.31
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (29 bp):
ATATATAAATAATATAATATGTAAAAAAT
Found at i:103630071 original size:30 final size:30
Alignment explanation
Indices: 103630037--103630107 Score: 133
Period size: 30 Copynumber: 2.4 Consensus size: 30
103630027 AATGGAGCAA
*
103630037 GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
103630067 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
103630097 GTGTGGCTAGT
1 GTGTGGCTAGT
103630108 TGAGAAAAGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.18, C:0.04, G:0.48, T:0.30
Consensus pattern (30 bp):
GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:103630815 original size:14 final size:14
Alignment explanation
Indices: 103630796--103630846 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
103630786 GAGTTGATTT
*
103630796 TTGAAAAATATAAA
1 TTGAAAAATAGAAA
103630810 TTGAAAAAAATAGAAA
1 TTG--AAAAATAGAAA
**
103630826 TTGAAAAGCAGAAA
1 TTGAAAAATAGAAA
103630840 TT-AAAAA
1 TTGAAAAA
103630847 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 14 0.45
16 13 0.42
ACGTcount: A:0.65, C:0.02, G:0.12, T:0.22
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:103630820 original size:16 final size:16
Alignment explanation
Indices: 103630799--103630832 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
103630789 TTGATTTTTG
*
103630799 AAAAATATAAATTGAA
1 AAAAATAGAAATTGAA
103630815 AAAAATAGAAATTGAA
1 AAAAATAGAAATTGAA
103630831 AA
1 AA
103630833 GCAGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (16 bp):
AAAAATAGAAATTGAA
Found at i:103630916 original size:105 final size:105
Alignment explanation
Indices: 103630730--103630920 Score: 283
Period size: 105 Copynumber: 1.8 Consensus size: 105
103630720 CATTAAAAAT
* * * *
103630730 AGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACATCTCGCAATATGAGTTGATT
1 AGAAATTAAAAAGACCTCAGCACGTGAGCCAAGGCTCAACTCACATCTCGCAATATGAGTTAATT
* *
103630795 TTTGAAAAATATAAATTGAAAAAAATAGAAATTGAAAAGC
66 TTTGAAAAACAGAAATTGAAAAAAATAGAAATTGAAAAGC
* ** *
103630835 AGAAATTAAAAAGACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATT
1 AGAAATTAAAAAGACCTCAGCACGTGAGCCAAGGCTCAACTCACATCTCGCAATATGAGTTAATT
*
103630900 TTTGACAAACAGAAATTGAAA
66 TTTGAAAAACAGAAATTGAAA
103630921 TTACCTCAGC
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
105 75 1.00
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.24
Consensus pattern (105 bp):
AGAAATTAAAAAGACCTCAGCACGTGAGCCAAGGCTCAACTCACATCTCGCAATATGAGTTAATT
TTTGAAAAACAGAAATTGAAAAAAATAGAAATTGAAAAGC
Found at i:103631034 original size:74 final size:73
Alignment explanation
Indices: 103630826--103631049 Score: 322
Period size: 74 Copynumber: 3.0 Consensus size: 73
103630816 AAAATAGAAA
* * **
103630826 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTAAAAATACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
*
103630891 GAGTTAATTT
64 GAGTTGATTT
* * * * * *
103630901 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCTCCTTTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
103630966 GTTGATTT
66 GTTGATTT
103630974 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
103631039 AGTTGATTT
65 AGTTGATTT
103631048 TT
1 TT
103631050 TTTTTACGAA
Statistics
Matches: 131, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
73 50 0.38
74 56 0.43
75 25 0.19
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (73 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:103631132 original size:93 final size:92
Alignment explanation
Indices: 103630974--103631142 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 92
103630964 GAGTTGATTT
* * *
103630974 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGACGCTCAACTCACCTCTCGCAATATG
*
103631039 AGTTGATTTTTTTTTTACGAACAGAAA
66 AGTTAATTTTTTTTTTACGAACAGAAA
*
103631066 TTGAAGAACAGAAA-TTAAAAAGACCTCAGCATGTGAGCC-GACGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGACGCTCAACTCACCTCTCGCAAT
103631129 ATGAGTTAATTTTT
63 ATGAGTTAATTTTT
103631143 GACAAACAGA
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
91 15 0.22
92 13 0.19
93 39 0.57
94 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (92 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGACGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTTTTTTACGAACAGAAA
Found at i:103631394 original size:127 final size:127
Alignment explanation
Indices: 103631072--103631417 Score: 394
Period size: 128 Copynumber: 2.7 Consensus size: 127
103631062 GAAATTGAAG
* * * *
103631072 AACAGAAATTAAAAAGACCTCAGCATGTGAGCC-GACGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAAAAATTAAGAATACCTCAGC--GTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * *
103631136 AATTTTTGACAAACAGAAATTAAAAGGCTTAACTCACTTCTCGCAACATGAGTTGATTTTTGAAA
63 GA-TTTTGAAAAACAGAAATTAAAAGGCTTAACCCACCTCTCGCAACATGAGTTGATTCTTGAAA
103631201 C
127 C
*
103631202 AACAAAAATTAAGAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAAAAATTAAGAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
103631267 TTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACA-
66 TTTGAAAAA-CAGAAATTAAAAGGCTT-AACCCACCTCTCGCAACATGAGTTGATTCTTGAAAC
* * * ** *
103631329 AACAGAAATTGAA-ATTACCTCATCGTGTTCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA
1 AACAAAAATT-AAGAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
103631393 TTTTTTGAAAAACAAAAATTTAAAA
65 --TTTTGAAAAACAGAAA-TTAAAA
103631418 ATACCTCAGC
Statistics
Matches: 187, Mismatches: 22, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
127 67 0.36
128 83 0.44
129 16 0.09
130 21 0.11
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (127 bp):
AACAAAAATTAAGAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTGAAAAACAGAAATTAAAAGGCTTAACCCACCTCTCGCAACATGAGTTGATTCTTGAAAC
Found at i:103631442 original size:75 final size:74
Alignment explanation
Indices: 103631292--103631473 Score: 260
Period size: 75 Copynumber: 2.5 Consensus size: 74
103631282 ATTAAAAGGT
* * * * * * *
103631292 TCAACCCACCTCTCGCAATATGAGTTGA-TTCTTGACAAACAGAAATTGAAATTACCTCATCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTG
103631356 TTCTGAGGC
66 TTCTGAGGC
*
103631365 TCAACTCATCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTTAAAAATACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAA-TTAAAAATACCTCAGCGT
103631430 G-TCTTGAGGC
65 GTTC-TGAGGC
103631440 TCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTT
103631474 TTTTACGAAC
Statistics
Matches: 97, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
73 26 0.27
74 16 0.16
75 55 0.57
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (74 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTG
TTCTGAGGC
Found at i:103631485 original size:423 final size:426
Alignment explanation
Indices: 103630870--103631711 Score: 1302
Period size: 423 Copynumber: 1.9 Consensus size: 426
103630860 GAGCTGAGGC
* *
103630870 TCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACCCACCTCTCGCAATATGAGTTAATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* *
103630935 CCCGAGGCTCAACTCTCCTTTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACC
66 CCCGAGGCTCAACTCTCCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAATACC
103631000 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACGAACAGAA
131 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACGAACAGAA
*
103631065 ATTGAAGAACAGAAATTAAAAAGACCTCAGCATGTGAGCCGACGCTCAACTCACCTCTCGCAATA
196 ATTGAAGAACAAAAATTAAAAAGACCTCAGCATGTGAGCCGACGCTCAACTCACCTCTCGCAATA
*
103631130 TGAGTTAATTTTTGACAAACAGAAATT-A-A-A-AGGCTTAACTCA-CTTCTCGCAACATGAGTT
261 TGAGTTAATTTTTGACAAACAGAAATTAATACACAGGCTCAACTCACCTT-TCGCAACATGAGTT
*
103631190 GATTTTTGAAACAACA-AAAATTAAGAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGC
325 GATTTTTGAAA-AACAGAAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGC
103631254 AATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
389 AATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
* *
103631292 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACCCACCTCTCGCAATATGAGTTAATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* *
103631357 TCTGAGGCTCAACTCAT-CTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTTAAAAATA
66 CCCGAGGCTCAACTC-TCCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAAAAATTTAAAAATA
*
103631421 CCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACGAACAG
129 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACGAACAG
* *
103631486 AAATTGAAGAACAAAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAA
194 AAATTGAAGAACAAAAATTAAAAAGACCTCAGCATGTGAGCCGACGCTCAACTCACCTCTCGCAA
103631551 TATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACC
259 TATGAGTTAATTTTTGACAAACAGAAATT--AA-TA---CA--------C-AGGCTCAACTCACC
* * *
103631616 TTTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCT
309 TTTCGCAACATGAGTTGATTTTTGAAAAACAGAAAATTAAAAATACCTCAGCGTGACCTGAGGCT
*
103631681 CAACTCACCTCTCGCAATATGAGTTGATTTT
374 CAACTCACCTCTCGCAATATGAGCTGATTTT
103631712 TTTTACGAAC
Statistics
Matches: 379, Mismatches: 18, Indels: 26
0.90 0.04 0.06
Matches are distributed among these distances:
422 92 0.24
423 182 0.48
426 1 0.00
428 1 0.00
432 1 0.00
441 4 0.01
442 95 0.25
443 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (426 bp):
TCAACCCACCTCTCGCAATATGAGTTAATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
CCCGAGGCTCAACTCTCCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAATACC
TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACGAACAGAA
ATTGAAGAACAAAAATTAAAAAGACCTCAGCATGTGAGCCGACGCTCAACTCACCTCTCGCAATA
TGAGTTAATTTTTGACAAACAGAAATTAATACACAGGCTCAACTCACCTTTCGCAACATGAGTTG
ATTTTTGAAAAACAGAAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAA
TATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
Found at i:103631615 original size:73 final size:73
Alignment explanation
Indices: 103631495--103631731 Score: 312
Period size: 73 Copynumber: 3.2 Consensus size: 73
103631485 GAAATTGAAG
* * **
103631495 AACAAAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
103631560 ATTTTTGACA
64 ATTTTTGACA
* * *
103631570 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
*
103631635 TTTTGAAA
66 TTTTGACA
* *
103631643 AACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-A
* * *
103631708 TTTTTTTTACG
64 -ATTTTTGACA
103631719 AACAGAAATTGAA
1 AACAGAAATTGAA
103631732 GAACAGAAAT
Statistics
Matches: 141, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
73 52 0.37
74 50 0.35
75 25 0.18
76 14 0.10
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (73 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
TTTTGACA
Found at i:103631737 original size:14 final size:14
Alignment explanation
Indices: 103631718--103631745 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
103631708 TTTTTTTTAC
103631718 GAACAGAAATTGAA
1 GAACAGAAATTGAA
103631732 GAACAGAAATTGAA
1 GAACAGAAATTGAA
103631746 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:103631791 original size:91 final size:90
Alignment explanation
Indices: 103631637--103631803 Score: 257
Period size: 91 Copynumber: 1.8 Consensus size: 90
103631627 GAGTTGATTT
* *
103631637 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
103631702 AGTTGATTTTTTTTACGAACAGAAA
66 AGTTGATTTTTTTTACGAACAGAAA
* *
103631727 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
103631790 ATGAGTTGATTTTT
63 ATGAGTTGATTTTT
103631804 GAAAAACAGA
Statistics
Matches: 70, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
89 14 0.20
90 13 0.19
91 41 0.59
92 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (90 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTTACGAACAGAAA
Found at i:103631804 original size:238 final size:238
Alignment explanation
Indices: 103631292--103631948 Score: 1118
Period size: 238 Copynumber: 2.8 Consensus size: 238
103631282 ATTAAAAGGT
* * *
103631292 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* * *
103631357 TCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTTAAAAATAC
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAATAC
*
103631422 CTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACGAACAGA
130 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTTACGAACAGA
103631487 AATTGAAGAACAAAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
193 AATTGAAGAACAAAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
*
103631533 TCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* *
103631598 CCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACC
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACC
103631663 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAAT
131 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAAT
*
103631728 TGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
196 TGAAGAACAAAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
* *
103631771 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAGATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
* * * *
103631836 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAA-TTGAAATTACC
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACC
*
103631900 TCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
131 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
103631949 GAAAAACAAA
Statistics
Matches: 395, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
237 57 0.14
238 173 0.44
240 72 0.18
241 93 0.24
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (238 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACC
TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAAT
TGAAGAACAAAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
Found at i:103631990 original size:72 final size:73
Alignment explanation
Indices: 103631766--103632020 Score: 413
Period size: 73 Copynumber: 3.5 Consensus size: 73
103631756 CATGTGAGCC
*
103631766 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAGATTACCTCAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAG
103631831 CGTGTCTT
66 CGTGTCTT
*
103631839 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAG
*
103631904 CGTGTCCT
66 CGTGTCTT
* * * * * *
103631912 GAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGTATCTCAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAG
103631976 CGTGTCTT
66 CGTGTCTT
*
103631984 GAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
103632021 CCTTGAAAAG
Statistics
Matches: 168, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
72 63 0.38
73 105 0.62
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (73 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAG
CGTGTCTT
Found at i:103632002 original size:145 final size:147
Alignment explanation
Indices: 103631733--103632020 Score: 438
Period size: 145 Copynumber: 2.0 Consensus size: 147
103631723 GAAATTGAAG
*
103631733 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTAGCAATATGAGTTG
* * * * *
103631798 ATTTTTGAAAAACAGAAATTGAGATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
65 ATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
103631863 ATGAGTTGATTTTTGACA
130 ATGAGTTGATTTTTGACA
** *
103631881 AACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG
1 AACAGAAATTGAAAAGACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTAGCAATATGAGTTG
* *
103631944 A-TTTTGAAAAACAAAAATTAAAAGTATCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAAT
65 ATTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
103632008 ATGAGTTGATTTT
130 ATGAGTTGATTTT
103632021 CCTTGAAAAG
Statistics
Matches: 128, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
145 71 0.55
146 35 0.27
148 22 0.17
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (147 bp):
AACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA
TTTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGACA
Found at i:103633418 original size:699 final size:699
Alignment explanation
Indices: 103632080--103633478 Score: 2780
Period size: 699 Copynumber: 2.0 Consensus size: 699
103632070 TGGTAGAACT
103632080 CGGGTGTCTTTTCCTTTGATTCAGTGCGACTCTCATTCAAGATTTCTTGCTCTGCTGGAGTACCT
1 CGGGTGTCTTTTCCTTTGATTCAGTGCGACTCTCATTCAAGATTTCTTGCTCTGCTGGAGTACCT
103632145 GTATATGCTATGTATGATGTTATCATGATATGCACATGTTTGTCTTAAATGCTTTTATGCCTACA
66 GTATATGCTATGTATGATGTTATCATGATATGCACATGTTTGTCTTAAATGCTTTTATGCCTACA
103632210 TGATTATGCAGTGCTCCTTAAGCATGTTTGTCGTATGTCCATTTAGCCACGATTGTTGAGGATCT
131 TGATTATGCAGTGCTCCTTAAGCATGTTTGTCGTATGTCCATTTAGCCACGATTGTTGAGGATCT
*
103632275 GTGTTCATTGCTTTGATTCTCGACTTTCTCTTTAGGCCTTATACCTGCCTTCAAGCTTCACGAGT
196 GTGTTCATTGCTTTGATTCTCGACTTTCTCTTCAGGCCTTATACCTGCCTTCAAGCTTCACGAGT
103632340 AATCGACGTTCCTCAGATATCACTCTTCTGCCCCCGATTGAACTTTGTTCTTACTTTGAGACTCT
261 AATCGACGTTCCTCAGATATCACTCTTCTGCCCCCGATTGAACTTTGTTCTTACTTTGAGACTCT
103632405 TGTGCTTATCAAATTTTCATCCAGGTAATGCTTAACATTTCTTTTGTTTAGAGTATGTCATTTCT
326 TGTGCTTATCAAATTTTCATCCAGGTAATGCTTAACATTTCTTTTGTTTAGAGTATGTCATTTCT
103632470 CCATTTATCATGTAAATAAACACATAATGAGATGCATGAAAAAGGTCAGGTAGGGAAAAAATGAT
391 CCATTTATCATGTAAATAAACACATAATGAGATGCATGAAAAAGGTCAGGTAGGGAAAAAATGAT
103632535 ATTTCATATTCATCTATTTCAAATGTGGCAAATAAAGCAAGTTAACCAATGAGAGTAAAAAATGT
456 ATTTCATATTCATCTATTTCAAATGTGGCAAATAAAGCAAGTTAACCAATGAGAGTAAAAAATGT
103632600 CAAAAAGAAAGAAAGGATCGTATTCAACGGATACAAATACTTTAGATATTCGACACATGAACTCT
521 CAAAAAGAAAGAAAGGATCGTATTCAACGGATACAAATACTTTAGATATTCGACACATGAACTCT
*
103632665 TCCACGTTCCTCAATCAAGAATCTTTTCGAGTCTGGCTCTTTGCGTAGAAGATTTCGAGCTTTCA
586 TCCACATTCCTCAATCAAGAATCTTTTCGAGTCTGGCTCTTTGCGTAGAAGATTTCGAGCTTTCA
103632730 GAAATGCTTCAAATACTGTAGTCTCACTGTTTGACCCGCTGTTAAAACG
651 GAAATGCTTCAAATACTGTAGTCTCACTGTTTGACCCGCTGTTAAAACG
103632779 CGGGTGTCTTTTCCTTTGATTCAGTGCGACTCTCATTCAAGATTTCTTGCTCTGCTGGAGTACCT
1 CGGGTGTCTTTTCCTTTGATTCAGTGCGACTCTCATTCAAGATTTCTTGCTCTGCTGGAGTACCT
103632844 GTATATGCTATGTATGATGTTATCATGATATGCACATGTTTGTCTTAAATGCTTTTATGCCTACA
66 GTATATGCTATGTATGATGTTATCATGATATGCACATGTTTGTCTTAAATGCTTTTATGCCTACA
103632909 TGATTATGCAGTGCTCCTTAAGCATGTTTGTCGTATGTCCATTTAGCCACGATTGTTGAGGATCT
131 TGATTATGCAGTGCTCCTTAAGCATGTTTGTCGTATGTCCATTTAGCCACGATTGTTGAGGATCT
103632974 GTGTTCATTGCTTTGATTCTCGACTTTCTCTTCAGGCCTTATACCTGCCTTCAAGCTTCACGAGT
196 GTGTTCATTGCTTTGATTCTCGACTTTCTCTTCAGGCCTTATACCTGCCTTCAAGCTTCACGAGT
103633039 AATCGACGTTCCTCAGATATCACTCTTCTGCCCCCGATTGAACTTTGTTCTTACTTTGAGACTCT
261 AATCGACGTTCCTCAGATATCACTCTTCTGCCCCCGATTGAACTTTGTTCTTACTTTGAGACTCT
103633104 TGTGCTTATCAAATTTTCATCCAGGTAATGCTTAACATTTCTTTTGTTTAGAGTATGTCATTTCT
326 TGTGCTTATCAAATTTTCATCCAGGTAATGCTTAACATTTCTTTTGTTTAGAGTATGTCATTTCT
103633169 CCATTTATCATGTAAATAAACACATAATGAGATGCATGAAAAAGGTCAGGTAGGGAAAAAATGAT
391 CCATTTATCATGTAAATAAACACATAATGAGATGCATGAAAAAGGTCAGGTAGGGAAAAAATGAT
103633234 ATTTCATATTCATCTATTTCAAATGTGGCAAATAAAGCAAGTTAACCAATGAGAGTAAAAAATGT
456 ATTTCATATTCATCTATTTCAAATGTGGCAAATAAAGCAAGTTAACCAATGAGAGTAAAAAATGT
103633299 CAAAAAGAAAGAAAGGATCGTATTCAACGGATACAAATACTTTAGATATTCGACACATGAACTCT
521 CAAAAAGAAAGAAAGGATCGTATTCAACGGATACAAATACTTTAGATATTCGACACATGAACTCT
103633364 TCCACATTCCTCAATCAAGAATCTTTTCGAGTCTGGCTCTTTGCGTAGAAGATTTCGAGCTTTCA
586 TCCACATTCCTCAATCAAGAATCTTTTCGAGTCTGGCTCTTTGCGTAGAAGATTTCGAGCTTTCA
103633429 GAAATGCTTCAAATACTGTAGTCTCACTGTTTGACCCGCTGTTAAAACG
651 GAAATGCTTCAAATACTGTAGTCTCACTGTTTGACCCGCTGTTAAAACG
103633478 C
1 C
103633479 CACACTCTTT
Statistics
Matches: 698, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
699 698 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (699 bp):
CGGGTGTCTTTTCCTTTGATTCAGTGCGACTCTCATTCAAGATTTCTTGCTCTGCTGGAGTACCT
GTATATGCTATGTATGATGTTATCATGATATGCACATGTTTGTCTTAAATGCTTTTATGCCTACA
TGATTATGCAGTGCTCCTTAAGCATGTTTGTCGTATGTCCATTTAGCCACGATTGTTGAGGATCT
GTGTTCATTGCTTTGATTCTCGACTTTCTCTTCAGGCCTTATACCTGCCTTCAAGCTTCACGAGT
AATCGACGTTCCTCAGATATCACTCTTCTGCCCCCGATTGAACTTTGTTCTTACTTTGAGACTCT
TGTGCTTATCAAATTTTCATCCAGGTAATGCTTAACATTTCTTTTGTTTAGAGTATGTCATTTCT
CCATTTATCATGTAAATAAACACATAATGAGATGCATGAAAAAGGTCAGGTAGGGAAAAAATGAT
ATTTCATATTCATCTATTTCAAATGTGGCAAATAAAGCAAGTTAACCAATGAGAGTAAAAAATGT
CAAAAAGAAAGAAAGGATCGTATTCAACGGATACAAATACTTTAGATATTCGACACATGAACTCT
TCCACATTCCTCAATCAAGAATCTTTTCGAGTCTGGCTCTTTGCGTAGAAGATTTCGAGCTTTCA
GAAATGCTTCAAATACTGTAGTCTCACTGTTTGACCCGCTGTTAAAACG
Found at i:103641030 original size:12 final size:12
Alignment explanation
Indices: 103641010--103641045 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
103641000 TGGGATATGC
*
103641010 AATGTATGAATG
1 AATGCATGAATG
103641022 AATGCATGAATG
1 AATGCATGAATG
103641034 AATGCATGAATG
1 AATGCATGAATG
103641046 TCAAAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:103642640 original size:16 final size:15
Alignment explanation
Indices: 103642619--103642666 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
103642609 GATGTGAATA
103642619 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
103642635 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
103642650 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
103642666 A
1 A
103642667 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:103642642 original size:24 final size:24
Alignment explanation
Indices: 103642615--103642670 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
103642605 TAATGATGTG
*
103642615 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
103642639 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
103642663 AATAATAA
1 AATAATAA
103642671 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:103642649 original size:8 final size:8
Alignment explanation
Indices: 103642615--103642666 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
103642605 TAATGATGTG
*
103642615 AATAATAA
1 AATATTAA
103642623 AATATATAA
1 AATAT-TAA
103642632 AATA-TAA
1 AATATTAA
103642639 AATATTAA
1 AATATTAA
*
103642647 AATATCAA
1 AATATTAA
*
103642655 AATATTAG
1 AATATTAA
103642663 AATA
1 AATA
103642667 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:103642882 original size:22 final size:24
Alignment explanation
Indices: 103642819--103642883 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
103642809 CGTGATAATA
*
103642819 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
103642844 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
103642867 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
103642884 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:103642940 original size:25 final size:24
Alignment explanation
Indices: 103642904--103643033 Score: 94
Period size: 23 Copynumber: 5.6 Consensus size: 24
103642894 AAAAAAATAT
*
103642904 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATT-AAG
* * *
103642929 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAATATTAAG
*
103642952 ATATATACGTAATATAGA-ATTTAA-
1 ATATATACATAATATA-ATA-TTAAG
* * *
103642976 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAATATTAAG
*
103642998 A-ATATATATAATATAATATTAAG
1 ATATATACATAATATAATATTAAG
*
103643021 AAATATA-ATAATA
1 ATATATACATAATA
103643034 ACAAAAAAGG
Statistics
Matches: 84, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
21 2 0.02
22 15 0.18
23 41 0.49
24 7 0.08
25 19 0.23
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (24 bp):
ATATATACATAATATAATATTAAG
Found at i:103643597 original size:30 final size:30
Alignment explanation
Indices: 103643563--103643663 Score: 159
Period size: 30 Copynumber: 3.4 Consensus size: 30
103643553 AATGGAGCAA
103643563 GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
* *
103643593 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAA
1 GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
*
103643623 GAGTGGCTAGTGGAGTTT-GTGGTGGAAAAG
1 GTGTGGCTAGTGGA-TTTGGTGGTGGAAAAG
103643653 GTGTGGCTAGT
1 GTGTGGCTAGT
103643664 TGAGAAAAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
30 62 0.97
31 2 0.03
ACGTcount: A:0.21, C:0.04, G:0.47, T:0.29
Consensus pattern (30 bp):
GTGTGGCTAGTGGATTTGGTGGTGGAAAAG
Found at i:103643629 original size:60 final size:61
Alignment explanation
Indices: 103643519--103643663 Score: 188
Period size: 60 Copynumber: 2.4 Consensus size: 61
103643509 TAGGTACAAG
* * ** *
103643519 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGTAGGTAATGGAGCAAGTGTGGCTAGTGGA-TT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGTAGGTAATGGAAAAAGAGTGGCTAGTGGAGTT
* **
103643579 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTAGGTAATGGAAAAAGAGTGGCTAGTGGAGTT
103643640 T-GTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
103643664 TGAGAAAAGT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
59 2 0.03
60 70 0.93
61 3 0.04
ACGTcount: A:0.22, C:0.04, G:0.46, T:0.28
Consensus pattern (61 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTAGGTAATGGAAAAAGAGTGGCTAGTGGAGTT
Found at i:103647499 original size:32 final size:32
Alignment explanation
Indices: 103647459--103647611 Score: 225
Period size: 32 Copynumber: 4.8 Consensus size: 32
103647449 AAAAAATATG
* *
103647459 ATACATTAGGTTTACGTATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* *
103647491 ATACATTAGTTTTGCATATAAAAAAGTAGATA
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* *
103647523 ATACATTAGGTTCACATATAAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
* * *
103647555 ATACATTAGTTTTGCAAATGAAAAAGTAGATC
1 ATACATTAGTTTTACATATAAAAAAGTAGATC
103647587 ATACATTAGTTTTACATATAAAAAA
1 ATACATTAGTTTTACATATAAAAAA
103647612 CTAGTATAGT
Statistics
Matches: 105, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 105 1.00
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.32
Consensus pattern (32 bp):
ATACATTAGTTTTACATATAAAAAAGTAGATC
Found at i:103647544 original size:64 final size:64
Alignment explanation
Indices: 103647459--103647611 Score: 252
Period size: 64 Copynumber: 2.4 Consensus size: 64
103647449 AAAAAATATG
* *
103647459 ATACATTAGGTTTACGTATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGTAGATA
1 ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
* * *
103647523 ATACATTAGGTTCACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATGAAAAAGTAGATC
1 ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
*
103647587 ATACATTAGTTTTACATATAAAAAA
1 ATACATTAGGTTTACATATAAAAAA
103647612 CTAGTATAGT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 82 1.00
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.32
Consensus pattern (64 bp):
ATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCAAATAAAAAAGTAGATA
Found at i:103649901 original size:18 final size:19
Alignment explanation
Indices: 103649866--103649901 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
103649856 ATGATATTAA
103649866 TGATATACCTACAAGGTAG
1 TGATATACCTACAAGGTAG
103649885 TGATATACCTA-AAGGTA
1 TGATATACCTACAAGGTA
103649902 TGAAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (19 bp):
TGATATACCTACAAGGTAG
Found at i:103650196 original size:61 final size:61
Alignment explanation
Indices: 103650127--103650261 Score: 216
Period size: 61 Copynumber: 2.2 Consensus size: 61
103650117 TCTATCACAG
103650127 AACTCAGATCAAAAGAAATTATTAAGCTGAAACCTATAAAAAAACACTAAAGAGTTTTCCA
1 AACTCAGATCAAAAGAAATTATTAAGCTGAAACCTATAAAAAAACACTAAAGAGTTTTCCA
* * * * * *
103650188 AACTCAGATCAAAAGACATTATTGAGCTGAAACTTATAAAAAAGCAGTAAAGAGTTTTCCG
1 AACTCAGATCAAAAGAAATTATTAAGCTGAAACCTATAAAAAAACACTAAAGAGTTTTCCA
103650249 AACTCAGATCAAA
1 AACTCAGATCAAA
103650262 CTCAGATCAA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 68 1.00
ACGTcount: A:0.48, C:0.16, G:0.13, T:0.23
Consensus pattern (61 bp):
AACTCAGATCAAAAGAAATTATTAAGCTGAAACCTATAAAAAAACACTAAAGAGTTTTCCA
Found at i:103652406 original size:25 final size:22
Alignment explanation
Indices: 103652354--103652406 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 22
103652344 AAAAAAAACT
103652354 AAAATTAATAATAGAAAATGAA
1 AAAATTAATAATAGAAAATGAA
*
103652376 AGAAATTAACTAATATTAAAATGATA
1 A-AAATTAA-TAATA-GAAAATGA-A
103652402 AAAAT
1 AAAAT
103652407 AAATTTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 1 0.04
23 7 0.27
24 5 0.19
25 11 0.42
26 2 0.08
ACGTcount: A:0.64, C:0.02, G:0.08, T:0.26
Consensus pattern (22 bp):
AAAATTAATAATAGAAAATGAA
Found at i:103652784 original size:6 final size:6
Alignment explanation
Indices: 103652775--103652799 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
103652765 ACTAAAAATT
103652775 CATATG CATATG CATATG CATATG C
1 CATATG CATATG CATATG CATATG C
103652800 GTGTGGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (6 bp):
CATATG
Found at i:103661357 original size:23 final size:22
Alignment explanation
Indices: 103661313--103661357 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
103661303 GTATACTTAT
*
103661313 TTTTTTAATATTCAAATTTATA
1 TTTTTTAATATTCAAATATATA
* *
103661335 TTTTTTAATTTTTTAAATATATA
1 TTTTTTAA-TATTCAAATATATA
103661358 CGAAATAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTTTTAATATTCAAATATATA
Found at i:103663305 original size:13 final size:13
Alignment explanation
Indices: 103663289--103663313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
103663279 AGGAAATAAA
103663289 AAATAAAAAAAGG
1 AAATAAAAAAAGG
103663302 AAATAAAAAAAG
1 AAATAAAAAAAG
103663314 AGAGAGAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (13 bp):
AAATAAAAAAAGG
Found at i:103664038 original size:10 final size:10
Alignment explanation
Indices: 103664012--103664045 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
103664002 TTCTCAAAAT
103664012 ATTAATTAATTA
1 ATTAATTAA--A
103664024 ATTAATTAAA
1 ATTAATTAAA
103664034 ATTAATTAAA
1 ATTAATTAAA
103664044 AT
1 AT
103664046 AATAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.59
12 9 0.41
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
ATTAATTAAA
Found at i:103664051 original size:18 final size:18
Alignment explanation
Indices: 103664015--103664052 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
103664005 TCAAAATATT
*
103664015 AATTAATTAATTAATTAA
1 AATTAATTAAATAATTAA
103664033 AATTAATTAAAATAA-TAA
1 AATTAATT-AAATAATTAA
103664051 AA
1 AA
103664053 AAATTTCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTAATTAAATAATTAA
Found at i:103683174 original size:17 final size:17
Alignment explanation
Indices: 103683152--103683185 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
103683142 AAAACTCTAG
103683152 TTGTTAATTGTTTGGTA
1 TTGTTAATTGTTTGGTA
103683169 TTGTTAATTGTTTGGTA
1 TTGTTAATTGTTTGGTA
103683186 ACTAACACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.59
Consensus pattern (17 bp):
TTGTTAATTGTTTGGTA
Found at i:103688711 original size:19 final size:19
Alignment explanation
Indices: 103688687--103688724 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
103688677 CGGGTTGGGG
103688687 AAGTCAGAAACGAAAGGTT
1 AAGTCAGAAACGAAAGGTT
* *
103688706 AAGTCAGAACCGAAGGGTT
1 AAGTCAGAAACGAAAGGTT
103688725 CCTTTGGCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.29, T:0.16
Consensus pattern (19 bp):
AAGTCAGAAACGAAAGGTT
Found at i:103691556 original size:18 final size:18
Alignment explanation
Indices: 103691533--103691580 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
103691523 CCGAAAATGC
*
103691533 TATTTTAGTAAACTAAAA
1 TATTTTATTAAACTAAAA
103691551 TATTTTATTAAACTAAAA
1 TATTTTATTAAACTAAAA
103691569 TATTTTATTAAA
1 TATTTTATTAAA
103691581 ACAAGGGTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (18 bp):
TATTTTATTAAACTAAAA
Found at i:103693214 original size:29 final size:29
Alignment explanation
Indices: 103693183--103693239 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
103693173 CCTCTTAATA
103693183 TTTGCAAAA-TAACATTTTTATTTTTAAAAT
1 TTTGCAAAATTAA-ATTTTT-TTTTTAAAAT
* *
103693213 TTTGTAAAATTTAATTTTTTTTTTAAA
1 TTTGCAAAATTAAATTTTTTTTTTAAA
103693240 TTCTATAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 8 0.33
30 14 0.58
31 2 0.08
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (29 bp):
TTTGCAAAATTAAATTTTTTTTTTAAAAT
Found at i:103696342 original size:30 final size:30
Alignment explanation
Indices: 103696306--103696365 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
103696296 GTTTGAACTT
103696306 AGATGCGGCAATATGAACTTGGGCTTGGGA
1 AGATGCGGCAATATGAACTTGGGCTTGGGA
103696336 AGATGCGGCAATATGAACTTGGGCTTGGGA
1 AGATGCGGCAATATGAACTTGGGCTTGGGA
103696366 CTATAATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.13, G:0.37, T:0.23
Consensus pattern (30 bp):
AGATGCGGCAATATGAACTTGGGCTTGGGA
Found at i:103697726 original size:11 final size:11
Alignment explanation
Indices: 103697710--103697758 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
103697700 TACAAATTAT
103697710 TTTATATAAAA
1 TTTATATAAAA
*
103697721 TTTATAT-AAT
1 TTTATATAAAA
*
103697731 TTTATGATTAAA
1 TTTAT-ATAAAA
*
103697743 TTTAAATAAAA
1 TTTATATAAAA
103697754 TTTAT
1 TTTAT
103697759 TTTTATTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
10 7 0.23
11 18 0.58
12 6 0.19
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (11 bp):
TTTATATAAAA
Found at i:103697746 original size:22 final size:21
Alignment explanation
Indices: 103697703--103697751 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
103697693 AAAATATTAC
*
103697703 AAATTATTTTATATAAAATTT
1 AAATAATTTTATATAAAATTT
* *
103697724 ATATAATTTTATGATTAAATTT
1 AAATAATTTTAT-ATAAAATTT
103697746 AAATAA
1 AAATAA
103697752 AATTTATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
AAATAATTTTATATAAAATTT
Found at i:103706930 original size:19 final size:19
Alignment explanation
Indices: 103706906--103706945 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
103706896 GGTTGAAATT
*
103706906 AATAAACAAAAGTAAACTA
1 AATAAAAAAAAGTAAACTA
*
103706925 AATAAAAAAAATTAAACTA
1 AATAAAAAAAAGTAAACTA
103706944 AA
1 AA
103706946 ATAATTCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.72, C:0.07, G:0.03, T:0.17
Consensus pattern (19 bp):
AATAAAAAAAAGTAAACTA
Found at i:103721028 original size:2 final size:2
Alignment explanation
Indices: 103721023--103721053 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
103721013 AGATTTTTAA
*
103721023 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
103721054 AATTGGTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:103724934 original size:27 final size:27
Alignment explanation
Indices: 103724896--103724949 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
103724886 CTTGTATTTG
103724896 TTCCATCTCTTCCAAATCGCTCTCATA
1 TTCCATCTCTTCCAAATCGCTCTCATA
103724923 TTCCATCTCTTCCAAATCGCTCTCATA
1 TTCCATCTCTTCCAAATCGCTCTCATA
103724950 CACTATTCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.37, G:0.04, T:0.37
Consensus pattern (27 bp):
TTCCATCTCTTCCAAATCGCTCTCATA
Found at i:103727343 original size:30 final size:32
Alignment explanation
Indices: 103727301--103727361 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 32
103727291 TACACTTTGC
103727301 CCTTCTAAAATTATAAAAAT-TTGA-TATAAT
1 CCTTCTAAAATTATAAAAATATTGACTATAAT
*
103727331 CCTT-TAAGAATTATAAATATATTGACTATAA
1 CCTTCTAA-AATTATAAAAATATTGACTATAA
103727362 AAAATTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 3 0.11
30 15 0.56
31 4 0.15
32 5 0.19
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (32 bp):
CCTTCTAAAATTATAAAAATATTGACTATAAT
Found at i:103730622 original size:19 final size:21
Alignment explanation
Indices: 103730588--103730627 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
103730578 AAGAACGATG
103730588 AATTTGTGGAGAGAAAGTAAA
1 AATTTGTGGAGAGAAAGTAAA
*
103730609 AATTT-TGG-GAGAAATTAAA
1 AATTTGTGGAGAGAAAGTAAA
103730628 TTGGGGAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 3 0.17
21 5 0.28
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (21 bp):
AATTTGTGGAGAGAAAGTAAA
Found at i:103731595 original size:34 final size:34
Alignment explanation
Indices: 103731532--103731610 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
103731522 TATAAATTTA
103731532 AATCGATT-TTATATTAGAATATTACTTCTTTTG
1 AATCGATTGTTATATTAGAATATTACTTCTTTTG
* **
103731565 AATCGATTGTTATGTTTA-AATATTGTTTCTTTTG
1 AATCGATTGTTAT-ATTAGAATATTACTTCTTTTG
*
103731599 AATAGATTGTTA
1 AATCGATTGTTA
103731611 CGTAATACAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
33 8 0.20
34 29 0.73
35 3 0.08
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (34 bp):
AATCGATTGTTATATTAGAATATTACTTCTTTTG
Found at i:103734151 original size:36 final size:36
Alignment explanation
Indices: 103734104--103734175 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
103734094 ATATTAAGAG
103734104 TTAGAGGTATCTTAATTGACAAGTCACAACTCTGTT
1 TTAGAGGTATCTTAATTGACAAGTCACAACTCTGTT
103734140 TTAGAGGTATCTTAATTGACAAGTCACAACTCTGTT
1 TTAGAGGTATCTTAATTGACAAGTCACAACTCTGTT
103734176 GCTGGCTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (36 bp):
TTAGAGGTATCTTAATTGACAAGTCACAACTCTGTT
Found at i:103743646 original size:31 final size:31
Alignment explanation
Indices: 103743606--103743675 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
103743596 AACCCTTTCT
* *
103743606 GCATTAAATCCAATCAAAAACAGCAAATATA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
*
103743637 GCATGAAATCCAACCAAAAACAGCAAATGTA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
*
103743668 ACATGAAA
1 GCATGAAA
103743676 AATACAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.54, C:0.20, G:0.10, T:0.16
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAGCAAATATA
Found at i:103743948 original size:21 final size:21
Alignment explanation
Indices: 103743924--103743988 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
103743914 TCTCCTACCA
*
103743924 TCGCTGCTGCCTCTGCCTCTC
1 TCGCTGCTGCCGCTGCCTCTC
*
103743945 TCGCTGCTGCCGCTGCCTCCC
1 TCGCTGCTGCCGCTGCCTCTC
103743966 TCGCTGCTGCCGCTGCCTCTC
1 TCGCTGCTGCCGCTGCCTCTC
103743987 TC
1 TC
103743989 TGTTGCTTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.22, T:0.29
Consensus pattern (21 bp):
TCGCTGCTGCCGCTGCCTCTC
Found at i:103744432 original size:13 final size:14
Alignment explanation
Indices: 103744406--103744434 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
103744396 ACTAACGATG
103744406 AATTAAACCATTAT
1 AATTAAACCATTAT
103744420 AATTAAA-CATTAT
1 AATTAAACCATTAT
103744433 AA
1 AA
103744435 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:103749547 original size:9 final size:9
Alignment explanation
Indices: 103749533--103749624 Score: 107
Period size: 9 Copynumber: 10.2 Consensus size: 9
103749523 TACTTATGTA
103749533 TTATGTAAG
1 TTATGTAAG
*
103749542 TTATGTGAG
1 TTATGTAAG
103749551 TTATGTGAA-
1 TTATGT-AAG
*
103749560 TTATGTGAG
1 TTATGTAAG
*
103749569 TTATGTGAG
1 TTATGTAAG
103749578 TTATGTGAA-
1 TTATGT-AAG
*
103749587 TTATATAAG
1 TTATGTAAG
103749596 TTATGTAAG
1 TTATGTAAG
*
103749605 TTATGTGAG
1 TTATGTAAG
103749614 TTATGTAAG
1 TTATGTAAG
103749623 TT
1 TT
103749625 CAAGTATATA
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
8 3 0.04
9 66 0.93
10 2 0.03
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:103749564 original size:27 final size:27
Alignment explanation
Indices: 103749532--103749624 Score: 150
Period size: 27 Copynumber: 3.4 Consensus size: 27
103749522 CTACTTATGT
103749532 ATTATGTAAGTTATGTGAGTTATGTGA
1 ATTATGTAAGTTATGTGAGTTATGTGA
*
103749559 ATTATGTGAGTTATGTGAGTTATGTGA
1 ATTATGTAAGTTATGTGAGTTATGTGA
* *
103749586 ATTATATAAGTTATGTAAGTTATGTGA
1 ATTATGTAAGTTATGTGAGTTATGTGA
*
103749613 GTTATGTAAGTT
1 ATTATGTAAGTT
103749625 CAAGTATATA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (27 bp):
ATTATGTAAGTTATGTGAGTTATGTGA
Found at i:103749770 original size:39 final size:39
Alignment explanation
Indices: 103749726--103749995 Score: 495
Period size: 39 Copynumber: 6.9 Consensus size: 39
103749716 AATTCTTATT
*
103749726 TATTTAAATAAATTAATCCAATTTATATTAATTAAATAA
1 TATTTAAATAAATTAATCCAAATTATATTAATTAAATAA
*
103749765 TATTTAAATAAATTAATCCAAATTATACTAATTAAATAA
1 TATTTAAATAAATTAATCCAAATTATATTAATTAAATAA
*
103749804 TATTTAAATAAATTAATCCAAATTATACTAATTAAATAA
1 TATTTAAATAAATTAATCCAAATTATATTAATTAAATAA
103749843 TATTTAAATAAATTAATCCAAATTATATTAATTAAATAA
1 TATTTAAATAAATTAATCCAAATTATATTAATTAAATAA
*
103749882 TATTTAAACAAATTAATCCAAATTATATTAATTAAATAA
1 TATTTAAATAAATTAATCCAAATTATATTAATTAAATAA
103749921 TATTTAAATAAATTAATCCAAATTATATTAATTAAATAA
1 TATTTAAATAAATTAATCCAAATTATATTAATTAAATAA
*
103749960 TATTTACATAAATTAATCCAAATTATATTAATTAAA
1 TATTTAAATAAATTAATCCAAATTATATTAATTAAA
103749996 ATAACATGTC
Statistics
Matches: 225, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 225 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (39 bp):
TATTTAAATAAATTAATCCAAATTATATTAATTAAATAA
Found at i:103749872 original size:15 final size:14
Alignment explanation
Indices: 103749737--103749991 Score: 72
Period size: 14 Copynumber: 19.4 Consensus size: 14
103749727 ATTTAAATAA
*
103749737 ATTAATCCAATTTAT
1 ATTAAT-CAAATTAT
* *
103749752 ATTAATTAAATAAT
1 ATTAATCAAATTAT
*
103749766 ATT--T-AAA-TAA
1 ATTAATCAAATTAT
103749776 ATTAATCCAAATTAT
1 ATTAAT-CAAATTAT
* * *
103749791 ACTAATTAAATAAT
1 ATTAATCAAATTAT
*
103749805 ATT--T-AAA-TAA
1 ATTAATCAAATTAT
103749815 ATTAATCCAAATTAT
1 ATTAAT-CAAATTAT
* * *
103749830 ACTAATTAAATAAT
1 ATTAATCAAATTAT
*
103749844 ATT--T-AAA-TAA
1 ATTAATCAAATTAT
103749854 ATTAATCCAAATTAT
1 ATTAAT-CAAATTAT
* *
103749869 ATTAATTAAATAAT
1 ATTAATCAAATTAT
*
103749883 ATTTAAACAAATTA-
1 A-TTAATCAAATTAT
*
103749897 A-T--CCAAATTAT
1 ATTAATCAAATTAT
* *
103749908 ATTAATTAAATAAT
1 ATTAATCAAATTAT
*
103749922 ATT--T-AAA-TAA
1 ATTAATCAAATTAT
103749932 ATTAATCCAAATTAT
1 ATTAAT-CAAATTAT
* *
103749947 ATTAATTAAATAAT
1 ATTAATCAAATTAT
* *
103749961 ATT--T-ACA-TAA
1 ATTAATCAAATTAT
103749971 ATTAATCCAAATTAT
1 ATTAAT-CAAATTAT
103749986 ATTAAT
1 ATTAAT
103749992 TAAAATAACA
Statistics
Matches: 171, Mismatches: 39, Indels: 60
0.63 0.14 0.22
Matches are distributed among these distances:
10 27 0.16
11 15 0.09
12 12 0.07
14 64 0.37
15 53 0.31
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (14 bp):
ATTAATCAAATTAT
Found at i:103750016 original size:22 final size:23
Alignment explanation
Indices: 103749991--103750037 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
103749981 ATTATATTAA
103749991 TTAAAATA-ACATGTCTTTTGCT
1 TTAAAATAGACATGTCTTTTGCT
*
103750013 TTAATATAGACATGTCTTTTGCT
1 TTAAAATAGACATGTCTTTTGCT
103750036 TT
1 TT
103750038 TATTAATCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.28, C:0.13, G:0.11, T:0.49
Consensus pattern (23 bp):
TTAAAATAGACATGTCTTTTGCT
Done.