Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 319 of 352
Found at i:103752686 original size:12 final size:13
Alignment explanation
Indices: 103752669--103752700 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
103752659 AAATTTAGGG
103752669 TTAGGGG-AAATT
1 TTAGGGGAAAATT
103752681 TTAGGGGAAAATT
1 TTAGGGGAAAATT
103752694 TTAGGGG
1 TTAGGGG
103752701 GAAAGCTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (13 bp):
TTAGGGGAAAATT
Found at i:103754085 original size:7 final size:7
Alignment explanation
Indices: 103754054--103754121 Score: 55
Period size: 7 Copynumber: 9.6 Consensus size: 7
103754044 AACACATACT
103754054 CTAACCC
1 CTAACCC
*
103754061 CTAAACC
1 CTAACCC
* *
103754068 ATAAACTC
1 CT-AACCC
*
103754076 TTAACCC
1 CTAACCC
*
103754083 TTAACCC
1 CTAACCC
103754090 CTAACCC
1 CTAACCC
*
103754097 CTAATCC
1 CTAACCC
* *
103754104 TTATCCC
1 CTAACCC
103754111 CTAACCC
1 CTAACCC
103754118 CTAA
1 CTAA
103754122 TTCTTAACCA
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
7 43 0.91
8 4 0.09
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (7 bp):
CTAACCC
Found at i:103754105 original size:21 final size:21
Alignment explanation
Indices: 103754081--103754135 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
103754071 AACTCTTAAC
103754081 CCTTAACCCCTAACCCCTAAT
1 CCTTAACCCCTAACCCCTAAT
*
103754102 CCTTATCCCCTAACCCCTAAT
1 CCTTAACCCCTAACCCCTAAT
* *
103754123 TCTTAACCACTAA
1 CCTTAACCCCTAA
103754136 ATCTTAAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.44, G:0.00, T:0.27
Consensus pattern (21 bp):
CCTTAACCCCTAACCCCTAAT
Found at i:103754907 original size:40 final size:41
Alignment explanation
Indices: 103754806--103754909 Score: 129
Period size: 41 Copynumber: 2.5 Consensus size: 41
103754796 TTTTGCGACG
* *
103754806 TTTTCTATAAAGCGCCGCTGATGGTCAACCTATAGAGGCGTT
1 TTTTCTA-AAAGCGCCGCTAATGGTCAACCTATAGAGGCATT
* * * *
103754848 TTTTCTAAAAGCGCCGCTAATTGTCAACTTATAGCGGTATT
1 TTTTCTAAAAGCGCCGCTAATGGTCAACCTATAGAGGCATT
*
103754889 TTTT-TAAAAGCGCTGCTAATG
1 TTTTCTAAAAGCGCCGCTAATG
103754910 CTCGTTTTTA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
40 15 0.28
41 32 0.59
42 7 0.13
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (41 bp):
TTTTCTAAAAGCGCCGCTAATGGTCAACCTATAGAGGCATT
Found at i:103754982 original size:39 final size:38
Alignment explanation
Indices: 103754887--103754985 Score: 135
Period size: 39 Copynumber: 2.5 Consensus size: 38
103754877 TATAGCGGTA
*
103754887 TTTTTTTAAAAGCGCTGCTAATGCTCGTTTTTAGTGGCG
1 TTTTTTTAAAA-CGCCGCTAATGCTCGTTTTTAGTGGCG
* **
103754926 TTTTTGTAGAAGTGCCGCTAATGCTCGTTTTTAGTGGCG
1 TTTTTTTA-AAACGCCGCTAATGCTCGTTTTTAGTGGCG
103754965 TTTTTATTAAAACGCCGCTAA
1 TTTTT-TTAAAACGCCGCTAA
103754986 AAACCTGTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
39 47 0.92
40 4 0.08
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.41
Consensus pattern (38 bp):
TTTTTTTAAAACGCCGCTAATGCTCGTTTTTAGTGGCG
Found at i:103765190 original size:9 final size:9
Alignment explanation
Indices: 103765178--103765202 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
103765168 TTTTTCTTCT
103765178 TTTTTTTGA
1 TTTTTTTGA
103765187 TTTTTTTGA
1 TTTTTTTGA
103765196 TTTTTTT
1 TTTTTTT
103765203 AAATTTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (9 bp):
TTTTTTTGA
Found at i:103765485 original size:118 final size:118
Alignment explanation
Indices: 103765325--103765555 Score: 381
Period size: 118 Copynumber: 2.0 Consensus size: 118
103765315 TATTTCCGGT
103765325 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* * *
103765390 TCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
****
103765443 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
**
103765508 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
103765556 ATGGAAAACA
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
118 104 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:103766498 original size:20 final size:19
Alignment explanation
Indices: 103766473--103766521 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
103766463 TATTTAACTA
103766473 AAATAAAAAA-AATAAATAAT
1 AAATAAAAAAGAA-AAA-AAT
103766493 AAATAATAAAAGAAAAAAAT
1 AAATAA-AAAAGAAAAAAAT
103766513 AAATAAAAA
1 AAATAAAAA
103766522 TAAAAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 3 0.11
20 15 0.56
21 7 0.26
22 2 0.07
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (19 bp):
AAATAAAAAAGAAAAAAAT
Found at i:103766502 original size:23 final size:22
Alignment explanation
Indices: 103766472--103766527 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 22
103766462 ATATTTAACT
103766472 AAAATAAAAAAAATAAAT-AATA
1 AAAATAAAAAAAA-AAATAAATA
103766494 AATAATAAAAGAAAAAAATAAATA
1 AA-AATAAAA-AAAAAAATAAATA
103766518 AAAATAAAAA
1 AAAATAAAAA
103766528 GAAAGATTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
22 3 0.10
23 18 0.58
24 10 0.32
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (22 bp):
AAAATAAAAAAAAAAATAAATA
Found at i:103780253 original size:49 final size:49
Alignment explanation
Indices: 103780181--103780278 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
103780171 AGCAATGGAA
* * *
103780181 GATAAATATCGAGTGTGCCCAAGAATTTACGGAACTGGGAGCCAAGGAT
1 GATAAAAATCGAGTATGCCCAAGAACTTACGGAACTGGGAGCCAAGGAT
*
103780230 GATAAAAATCGAGTATGCCCAAGAACTTACGGAACTGGGAGTCAAGGAT
1 GATAAAAATCGAGTATGCCCAAGAACTTACGGAACTGGGAGCCAAGGAT
103780279 TGCGTGAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.37, C:0.16, G:0.28, T:0.19
Consensus pattern (49 bp):
GATAAAAATCGAGTATGCCCAAGAACTTACGGAACTGGGAGCCAAGGAT
Found at i:103781343 original size:42 final size:42
Alignment explanation
Indices: 103781288--103781426 Score: 201
Period size: 41 Copynumber: 3.4 Consensus size: 42
103781278 CATTTTACCA
* *
103781288 AAAATGCCGCTAAAAACTAGAGCATTAGCTGGCACTTTCGGT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCTGGCGCTTTCGGT
* *
103781330 AAAACGCCACTAAAAACCAGAGCATTAGC-GGCGCTTTCGGT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCTGGCGCTTTCGGT
* **
103781371 AAAACGCCGCTAAAAACTAGATCATTAG-TGGCGCTTTTAGT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCTGGCGCTTTCGGT
103781412 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
103781427 TTTATATAAC
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
41 61 0.70
42 26 0.30
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (42 bp):
AAAACGCCGCTAAAAACTAGAGCATTAGCTGGCGCTTTCGGT
Found at i:103781488 original size:38 final size:38
Alignment explanation
Indices: 103781446--103781528 Score: 112
Period size: 38 Copynumber: 2.2 Consensus size: 38
103781436 CTCTCTAAAA
* *
103781446 CCCTAAACCCCAAAAAATCATAAACACTAATCTATAAC
1 CCCTAAACCCCAAAAAACCATAAACACTAAACTATAAC
* * *
103781484 CCCTAAATCCTAAAAAACCCTAAACACTAAACTATAAC
1 CCCTAAACCCCAAAAAACCATAAACACTAAACTATAAC
*
103781522 CCTTAAA
1 CCCTAAA
103781529 ACCCTGAACC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.19
Consensus pattern (38 bp):
CCCTAAACCCCAAAAAACCATAAACACTAAACTATAAC
Found at i:103782458 original size:7 final size:7
Alignment explanation
Indices: 103782433--103782498 Score: 51
Period size: 7 Copynumber: 9.0 Consensus size: 7
103782423 AAATATTCAA
103782433 AAAAATT
1 AAAAATT
*
103782440 TAAAATT
1 AAAAATT
*
103782447 TAAAATT
1 AAAAATT
*
103782454 AAAAAAATA
1 --AAAAATT
*
103782463 AAAAATA
1 AAAAATT
*
103782470 AAAAATA
1 AAAAATT
*
103782477 AAAAATA
1 AAAAATT
103782484 AAAAACTT
1 AAAAA-TT
103782492 AAAAATT
1 AAAAATT
103782499 TAATATTTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
7 41 0.79
8 6 0.12
9 5 0.10
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAAATT
Found at i:103782459 original size:8 final size:7
Alignment explanation
Indices: 103782455--103782488 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
103782445 TTTAAAATTA
103782455 AAAAAAT
1 AAAAAAT
103782462 AAAAAAT
1 AAAAAAT
103782469 AAAAAAT
1 AAAAAAT
103782476 AAAAAAT
1 AAAAAAT
103782483 AAAAAA
1 AAAAAA
103782489 CTTAAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:103782460 original size:16 final size:15
Alignment explanation
Indices: 103782448--103782488 Score: 66
Period size: 14 Copynumber: 2.8 Consensus size: 15
103782438 TTTAAAATTT
*
103782448 AAAATTAAAAAAATA
1 AAAAATAAAAAAATA
103782463 AAAAAT-AAAAAATA
1 AAAAATAAAAAAATA
103782477 AAAAATAAAAAA
1 AAAAATAAAAAA
103782489 CTTAAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 14 0.58
15 10 0.42
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (15 bp):
AAAAATAAAAAAATA
Found at i:103782471 original size:21 final size:21
Alignment explanation
Indices: 103782455--103782497 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
103782445 TTTAAAATTA
103782455 AAAAAATAAAAAATAAAAAAT
1 AAAAAATAAAAAATAAAAAAT
*
103782476 AAAAAATAAAAAACTTAAAAAT
1 AAAAAATAAAAAA-TAAAAAAT
103782498 TTAATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (21 bp):
AAAAAATAAAAAATAAAAAAT
Found at i:103785779 original size:7 final size:7
Alignment explanation
Indices: 103785767--103785797 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
103785757 ATTTGTGCCT
103785767 TAACTCA
1 TAACTCA
103785774 TAACTCA
1 TAACTCA
*
103785781 TAACTTA
1 TAACTCA
103785788 TAACTCA
1 TAACTCA
103785795 TAA
1 TAA
103785798 TAGAATTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (7 bp):
TAACTCA
Found at i:103786354 original size:23 final size:23
Alignment explanation
Indices: 103786327--103786411 Score: 98
Period size: 23 Copynumber: 3.7 Consensus size: 23
103786317 AAAGTGTTGC
*
103786327 AAATTGAAGTTTTTAAATGCTAT
1 AAATTGAAGTGTTTAAATGCTAT
* * *
103786350 AAATTGAAGTGCTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGCTAT
* * *
103786373 AAATTGAAGTGTTTTAAGTACTAC
1 AAATTGAAGTG-TTTAAATGCTAT
103786397 AAATTGAAGTGTTTA
1 AAATTGAAGTGTTTA
103786412 GTTGCTGGAA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
23 34 0.67
24 17 0.33
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.40
Consensus pattern (23 bp):
AAATTGAAGTGTTTAAATGCTAT
Found at i:103786401 original size:47 final size:47
Alignment explanation
Indices: 103786315--103786407 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 47
103786305 CCCTACTAAA
* *
103786315 TTAAAGTGTTGCAAATTGAAGTTTTTAAATGCTATAAATTGAAGTGC
1 TTAAAGTGTTGCAAATTGAAGTTTTTAAATACTACAAATTGAAGTGC
* *
103786362 TTAAA-TGTTGTAAATTGAAGTGTTTTAAGTACTACAAATTGAAGTG
1 TTAAAGTGTTGCAAATTGAAGT-TTTTAAATACTACAAATTGAAGTG
103786408 TTTAGTTGCT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 15 0.37
47 26 0.63
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.39
Consensus pattern (47 bp):
TTAAAGTGTTGCAAATTGAAGTTTTTAAATACTACAAATTGAAGTGC
Found at i:103795433 original size:9 final size:9
Alignment explanation
Indices: 103795419--103795447 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
103795409 AACTTAGAGT
103795419 AACAAAATG
1 AACAAAATG
103795428 AACAAAATG
1 AACAAAATG
103795437 AACAAAATG
1 AACAAAATG
103795446 AA
1 AA
103795448 ACAGTTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.69, C:0.10, G:0.10, T:0.10
Consensus pattern (9 bp):
AACAAAATG
Found at i:103795734 original size:32 final size:32
Alignment explanation
Indices: 103795693--103795774 Score: 155
Period size: 32 Copynumber: 2.6 Consensus size: 32
103795683 TTTAAAGCCA
103795693 AATCATATTCGACTAAGCTGACTTATTAGCTC
1 AATCATATTCGACTAAGCTGACTTATTAGCTC
*
103795725 AATCATATTCGACTAAGTTGACTTATTAGCTC
1 AATCATATTCGACTAAGCTGACTTATTAGCTC
103795757 AATCATATTCGACTAAGC
1 AATCATATTCGACTAAGC
103795775 AAATTATATT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (32 bp):
AATCATATTCGACTAAGCTGACTTATTAGCTC
Found at i:103799409 original size:18 final size:18
Alignment explanation
Indices: 103799386--103799423 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
103799376 CTCAACTTAG
103799386 AAGGCAATCTAGTTATGT
1 AAGGCAATCTAGTTATGT
103799404 AAGGCAATCTAGTTATGT
1 AAGGCAATCTAGTTATGT
103799422 AA
1 AA
103799424 TGTTGGGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (18 bp):
AAGGCAATCTAGTTATGT
Found at i:103805028 original size:18 final size:18
Alignment explanation
Indices: 103805005--103805068 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
103804995 GAACAATTAT
*
103805005 TTATTCAGTAATAGTCAG
1 TTATTCAGTAATAATCAG
* * *
103805023 TTATTCGGTAACAATCAA
1 TTATTCAGTAATAATCAG
*
103805041 TTATTCAATAATAATCAG
1 TTATTCAGTAATAATCAG
*
103805059 TTGTTCAGTA
1 TTATTCAGTA
103805069 TCAATCAACT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (18 bp):
TTATTCAGTAATAATCAG
Found at i:103805045 original size:36 final size:36
Alignment explanation
Indices: 103804992--103805076 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 36
103804982 TCATTAACAA
* * * *
103804992 TCAG-AACAATTATTTATTCAGTAATAGTCAGTTAT
1 TCAGTAACAATCAATTATTCAATAATAATCAGTTAT
* *
103805027 TCGGTAACAATCAATTATTCAATAATAATCAGTTGT
1 TCAGTAACAATCAATTATTCAATAATAATCAGTTAT
*
103805063 TCAGTATCAATCAA
1 TCAGTAACAATCAA
103805077 CTGATCGGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 3 0.07
36 38 0.93
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (36 bp):
TCAGTAACAATCAATTATTCAATAATAATCAGTTAT
Found at i:103805111 original size:18 final size:18
Alignment explanation
Indices: 103805085--103805155 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
103805075 AACTGATCGG
*
103805085 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
103805103 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAGTCA-A
* * *
103805122 TT-TACAGTAACAATTAAA
1 TTATTCAGTAAC-AGTCAA
*
103805140 TTATTTAGTAACAGTC
1 TTATTCAGTAACAGTC
103805156 GATCTTTCCA
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
18 26 0.67
19 13 0.33
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:103805348 original size:53 final size:53
Alignment explanation
Indices: 103805274--103805408 Score: 209
Period size: 53 Copynumber: 2.5 Consensus size: 53
103805264 CCAGAACAAT
* * *
103805274 AACAGTAACAGTAGCAGTACGGTACATAGAGTACCTCATCGGAACAAATCCGA
1 AACAGTAACAGTAACATTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
*
103805327 AACAGTAACAGTAACATTACGGTACACAGAGTACCTCATCGGAACAAATTCGA
1 AACAGTAACAGTAACATTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
*
103805380 AACAGTAACAGTAACAGTAACGGTA-ACAG
1 AACAGTAACAGTAACA-TTACGGTACACAG
103805409 TAACAATATC
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 69 0.91
54 7 0.09
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.17
Consensus pattern (53 bp):
AACAGTAACAGTAACATTACGGTACACAGAGTACCTCATCGGAACAAATCCGA
Found at i:103805391 original size:6 final size:6
Alignment explanation
Indices: 103805380--103805413 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
103805370 ACAAATTCGA
*
103805380 AACAGT AACAGT AACAGT AACGGT AACAGT AACA
1 AACAGT AACAGT AACAGT AACAGT AACAGT AACA
103805414 ATATCCGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.50, C:0.18, G:0.18, T:0.15
Consensus pattern (6 bp):
AACAGT
Found at i:103807032 original size:15 final size:15
Alignment explanation
Indices: 103807012--103807046 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
103807002 AATTTTTCCC
*
103807012 TTTTTCCTTCTTTCT
1 TTTTTCCTTCCTTCT
*
103807027 TTTTTCTTTCCTTCT
1 TTTTTCCTTCCTTCT
103807042 TTTTT
1 TTTTT
103807047 TCCCCTGCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTCCTTCCTTCT
Found at i:103807106 original size:15 final size:16
Alignment explanation
Indices: 103807078--103807121 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
103807068 TCATCCTTTC
103807078 TTTCTTTTTCTATT-CTT
1 TTTC-TTTT-TATTCCTT
103807095 TTTCTTTTTATTCCTT
1 TTTCTTTTTATTCCTT
*
103807111 TTACTTTTTAT
1 TTTCTTTTTAT
103807122 ATATATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 4 0.16
16 17 0.68
17 4 0.16
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTCTTTTTATTCCTT
Found at i:103808626 original size:17 final size:19
Alignment explanation
Indices: 103808529--103808619 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
103808519 AGAATCTTCA
103808529 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103808548 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103808565 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103808583 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103808602 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
103808620 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:103808642 original size:42 final size:37
Alignment explanation
Indices: 103808529--103808626 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
103808519 AGAATCTTCA
103808529 ATGATATGCAATCTTAGATATGATA--CAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGAT
103808565 ATGATTGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGAT
103808602 ATGATATGCAATCTTAGA-A-GATATG
1 ATGAT-TGCAATCTTAGATATGATATG
103808627 ATTTTGTAAT
Statistics
Matches: 59, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
35 19 0.32
36 11 0.19
37 17 0.29
38 12 0.20
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATTGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:103808645 original size:22 final size:22
Alignment explanation
Indices: 103808529--103808642 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
103808519 AGAATCTTCA
103808529 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
103808548 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
103808565 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
103808583 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
103808602 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
103808624 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
103808643 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:103808931 original size:17 final size:18
Alignment explanation
Indices: 103808909--103808943 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
103808899 TGTTTCCCTG
*
103808909 ATTTTTTTTAT-ATTTTA
1 ATTTTTTTAATAATTTTA
103808926 ATTTTTTTAATAATTTTA
1 ATTTTTTTAATAATTTTA
103808944 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTTTTTAATAATTTTA
Found at i:103817298 original size:78 final size:78
Alignment explanation
Indices: 103817208--103817478 Score: 436
Period size: 78 Copynumber: 3.5 Consensus size: 78
103817198 TTCATATTCC
* * *
103817208 ACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCATTGAAGTAGATCCAAGATGATTTGGC
1 ACGGGGAGCAGATCGAAGACACAGCAGATCTAACCTTCATTGAAGCAGATCCAAGATGATTTGGC
103817273 ATCTCTGTATTAG
66 ATCTCTGTATTAG
* *
103817286 ACGGGGAGCAGATCGAAGACACAGTAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGC
1 ACGGGGAGCAGATCGAAGACACAGCAGATCTAACCTTCATTGAAGCAGATCCAAGATGATTTGGC
103817351 ATCTCTGTATTAG
66 ATCTCTGTATTAG
* * *
103817364 ACGGGGAGCAGATCGAAGACACAGCAGATTTGACCCTCATTGAAGCAGATCCAAGATGATTTGGC
1 ACGGGGAGCAGATCGAAGACACAGCAGATCTAACCTTCATTGAAGCAGATCCAAGATGATTTGGC
*
103817429 ATCTCAGTATTAG
66 ATCTCTGTATTAG
* *
103817442 AC-GGAAGCAGATCGAAGACATAGCAGATCTAACCTTC
1 ACGGGGAGCAGATCGAAGACACAGCAGATCTAACCTTC
103817479 GGATGTTTTC
Statistics
Matches: 179, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
77 30 0.17
78 149 0.83
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (78 bp):
ACGGGGAGCAGATCGAAGACACAGCAGATCTAACCTTCATTGAAGCAGATCCAAGATGATTTGGC
ATCTCTGTATTAG
Found at i:103817575 original size:89 final size:87
Alignment explanation
Indices: 103817401--103817601 Score: 212
Period size: 89 Copynumber: 2.3 Consensus size: 87
103817391 ATTTGACCCT
* * *
103817401 CATTGAAGCAGATCCAAGATGATTTGGCATCTCAGTATTAGACGGAAGCAGATCGAAGACATAGC
1 CATTGAAGCAGATCCAAGATGATTTGGCATCTCAGTATGACAAGGAAGCAGATCGAAGACATAGC
*
103817466 AGATCTAACCTTCGGATGTTTTCA
66 AGATCTAACCTTCCGATG-TTT-A
*
103817490 CATTGAAGTAGATCCAAGATGATTTGGCATCCTTGC-GT-TGACAAGG-AGCAGATCGAAGACAT
1 CATTGAAGCAGATCCAAGATGATTTGGCAT-C-T-CAGTATGACAAGGAAGCAGATCGAAGACAT
* ** *
103817552 AGCAGATTTTGCTTTCACG-TGTTTA
63 AGCAGATCTAACCTTC-CGATGTTTA
** *
103817577 CGCTGAAGCAGATCTAAGATGATTT
1 CATTGAAGCAGATCCAAGATGATTT
103817602 AACATCTCTG
Statistics
Matches: 95, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
87 22 0.23
88 3 0.03
89 59 0.62
90 7 0.07
91 3 0.03
92 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (87 bp):
CATTGAAGCAGATCCAAGATGATTTGGCATCTCAGTATGACAAGGAAGCAGATCGAAGACATAGC
AGATCTAACCTTCCGATGTTTA
Found at i:103817858 original size:221 final size:220
Alignment explanation
Indices: 103816666--103817245 Score: 902
Period size: 220 Copynumber: 2.7 Consensus size: 220
103816656 AAAGCACAGT
* * * *
103816666 AGATTTGACCTTCAGGTGTTTACGCTGAAGC-GAATCCAAGATGATTTAACATCTCTGTATTGTC
1 AGATTTGGCTTTCACGTGTTTACGCTGAAGCAG-ATCTAAGATGATTTAACATCTCTGTATTGTC
* *
103816730 AGAGAACAAATCGAAGAAACATATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATA
65 AGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATA
* **
103816795 GCAGATCTAGCCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTT
130 GCAGATCTAACCTTCGGATGCCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTT
* *
103816860 GACAAGGAGTAGATCGAAGACATAGC
195 GACAAGGAGCAAATCGAAGACATAGC
*
103816886 AGATTTGGCTTTCACGTGTTTACGCTGAAACAGATCTAAGATGATTTAACATCTCTGTATTGTCA
1 AGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGTCA
*
103816951 GAGAACAAATCGAAGAAACAGATTTGGCATCTCCACATTCGACGGAGAGCAGATCGAAGACATAG
66 GAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAG
*
103817016 CAGATCTAACCTTCGGATGACCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTT
131 CAGATCTAACCTTCGGATG-CCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTT
103817081 GACAAGGAGCAAATCGAAGACATAGC
195 GACAAGGAGCAAATCGAAGACATAGC
* * *
103817107 AGATTTGGCTTTCACGTATTTACGCTGAAGCAGATCTAAGATG-----GCATCTCTGTACTGTCA
1 AGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGTCA
* * * * *
103817167 GAGAAAAAATCAAAGAAATAGATTTGGCATCTTCATATTCCACGGAGAGCAGATCGAAGACATAG
66 GAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAG
103817232 CAGATCTAACCTTC
131 CAGATCTAACCTTC
103817246 ATTGAAGTAG
Statistics
Matches: 334, Mismatches: 24, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
216 88 0.26
220 138 0.41
221 108 0.32
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (220 bp):
AGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTATTGTCA
GAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAG
CAGATCTAACCTTCGGATGCCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTG
ACAAGGAGCAAATCGAAGACATAGC
Found at i:103817891 original size:221 final size:220
Alignment explanation
Indices: 103817421--103817919 Score: 779
Period size: 221 Copynumber: 2.3 Consensus size: 220
103817411 GATCCAAGAT
*
103817421 GATTTGGCATCT-CAGTATTAGACGGA-AGCAGATCGAAGACATAGCAGATCTAACCTTCGGATG
1 GATTTGGCATCTCCA-TATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGAGG
** * *
103817484 TTTTCACATTGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGA
65 CCTTCACATCGAAGTAAATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGA
* * *
103817549 CATAGCAGATTTTGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTA
130 CATAGCAAATTTGGCTTTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTA
*
103817614 TTGTCAGAGAACAAATCGAAGAAACA
195 CTGTCAGAGAACAAATCGAAGAAACA
* *
103817640 GATTTGGCATCTCCATATTCA-ACAGAGAGCAGATCGAAGACATAACAGATCTAACCTTCGGAGG
1 GATTTGGCATCTCCATATT-AGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGAGG
* *
103817704 ACCTTCACATCGAAGTAAATCCAAGATGATTTGGCATCTTTGCGTTGACAAGGAGTAGATCGAAG
65 -CCTTCACATCGAAGTAAATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAG
**
103817769 ACATAGCAAATTTGGCTTTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGT
129 ACATAGCAAATTTGGCTTTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGT
*
103817834 ACTGTCAGAGAATAAATCGAAGAAACA
194 ACTGTCAGAGAACAAATCGAAGAAACA
* * *
103817861 GATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTC
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC
103817920 ATTGAAGCAG
Statistics
Matches: 254, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
219 20 0.08
220 38 0.15
221 196 0.77
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (220 bp):
GATTTGGCATCTCCATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGAGGC
CTTCACATCGAAGTAAATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGAC
ATAGCAAATTTGGCTTTCACATGTTTACGCTGAAGCAGATCTAAGATGATTTAACATCTCTGTAC
TGTCAGAGAACAAATCGAAGAAACA
Found at i:103817973 original size:78 final size:78
Alignment explanation
Indices: 103817861--103818077 Score: 337
Period size: 78 Copynumber: 2.8 Consensus size: 78
103817851 CGAAGAAACA
** * * *
103817861 GATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
103817926 GCAGATCCAAGAT
66 GCAGATCCAAAAT
* *
103817939 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
103818003 AGCAGATCCAAAAT
65 AGCAGATCCAAAAT
*
103818017 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
103818078 GTGTTTACAT
Statistics
Matches: 126, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
77 1 0.01
78 124 0.98
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAAAT
Found at i:103818239 original size:45 final size:45
Alignment explanation
Indices: 103818017--103818245 Score: 223
Period size: 45 Copynumber: 5.1 Consensus size: 45
103818007 GATCCAAAAT
* * *
103818017 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
103818064 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCGTCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * **
103818109 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGTA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
103818153 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
103818198 GATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
103818243 GAT
1 GAT
103818246 ATCGCCTTCC
Statistics
Matches: 147, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
43 1 0.01
44 43 0.29
45 73 0.50
46 4 0.03
47 21 0.14
48 4 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (45 bp):
GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:103818273 original size:89 final size:88
Alignment explanation
Indices: 103818017--103818280 Score: 241
Period size: 89 Copynumber: 2.9 Consensus size: 88
103818007 GATCCAAAAT
* * * *
103818017 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATC-AA-AGATAGCAGAT-TG-CCTTCCTGAGT
* * *
103818082 T-TACATCGAAGCAGATCCAAGATGACA
62 TGTACGT-GAAGCAGATCGAAGATAACA
** * * *
103818109 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGTAGATTTGGCGTCTCTGTA-TT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGA-TTGCCTTC-CTG-AGTT
* *
103818172 AG-ACGGGGAGCAGATCGAAGATAACA
63 -GTACGTGAAGCAGATCGAAGATAACA
* *
103818198 GATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCAAAGATAGCAGATATCGCCTTCCTGAGTTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGAT-T-GCCTTCCTGAGTTG
*
103818263 TA-GTGAAGCAGATTGAAG
64 TACGTGAAGCAGATCGAAG
103818281 CCGTCAATAG
Statistics
Matches: 138, Mismatches: 24, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
88 3 0.02
89 80 0.58
90 17 0.12
91 5 0.04
92 33 0.24
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (88 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATTGCCTTCCTGAGTTGTA
CGTGAAGCAGATCGAAGATAACA
Found at i:103818668 original size:35 final size:37
Alignment explanation
Indices: 103818597--103818694 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
103818587 ATAATCTTCA
103818597 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
103818635 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
103818670 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
103818695 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:103818694 original size:17 final size:19
Alignment explanation
Indices: 103818597--103818687 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
103818587 ATAATCTTCA
103818597 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103818616 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103818635 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103818652 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
103818670 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
103818688 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:103818713 original size:22 final size:22
Alignment explanation
Indices: 103818597--103818710 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
103818587 ATAATCTTCA
103818597 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
103818616 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
103818635 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
103818652 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
103818670 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
103818692 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
103818711 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:103820981 original size:21 final size:18
Alignment explanation
Indices: 103820937--103820974 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
103820927 ACGCAAAAAG
103820937 TAAAAATATTAGGTCATT
1 TAAAAATATTAGGTCATT
103820955 TAAAAATATTAGGTCATT
1 TAAAAATATTAGGTCATT
103820973 TA
1 TA
103820975 TTAAAAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (18 bp):
TAAAAATATTAGGTCATT
Found at i:103821149 original size:38 final size:37
Alignment explanation
Indices: 103821104--103821178 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 37
103821094 ATAACGGAAA
* *
103821104 ATGTTAATGAGTGACTGATTTGTAACTTTTTGATAACG
1 ATGTTAATGAGTAACTGATTTGTAAC-TTTCGATAACG
* *
103821142 ATGTTAATGGGTAACTGATTTGTCACTTTCGATAACG
1 ATGTTAATGAGTAACTGATTTGTAACTTTCGATAACG
103821179 TTAATGACTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
37 10 0.30
38 23 0.70
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (37 bp):
ATGTTAATGAGTAACTGATTTGTAACTTTCGATAACG
Found at i:103822972 original size:29 final size:29
Alignment explanation
Indices: 103822930--103822990 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
103822920 TCTTACACAG
103822930 AATGGCTAAGTTGAGCGCTTTTGAGTTTA
1 AATGGCTAAGTTGAGCGCTTTTGAGTTTA
* *
103822959 AATGGCTCAGTTGAGTGCTTTTGAGTTTA
1 AATGGCTAAGTTGAGCGCTTTTGAGTTTA
103822988 AAT
1 AAT
103822991 TTGACAGTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.25, C:0.10, G:0.26, T:0.39
Consensus pattern (29 bp):
AATGGCTAAGTTGAGCGCTTTTGAGTTTA
Found at i:103824120 original size:34 final size:34
Alignment explanation
Indices: 103824077--103824145 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
103824067 AATAAAACCC
103824077 ATTCTGGTCATGTTTTCAACATTTCTAATTTCAA
1 ATTCTGGTCATGTTTTCAACATTTCTAATTTCAA
103824111 ATTCTGGTCATGTTTTCAACATTTCTAATTTCAA
1 ATTCTGGTCATGTTTTCAACATTTCTAATTTCAA
103824145 A
1 A
103824146 AACTAGTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.46
Consensus pattern (34 bp):
ATTCTGGTCATGTTTTCAACATTTCTAATTTCAA
Found at i:103838795 original size:25 final size:26
Alignment explanation
Indices: 103838753--103838801 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
103838743 ATTTTTTATT
*
103838753 AATTTAATT-TTTATTTTTTAAATTA
1 AATTTAATTATTAATTTTTTAAATTA
*
103838778 AATTTGATTATTAATTTTTTAAAT
1 AATTTAATTATTAATTTTTTAAAT
103838802 AGAGTCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (26 bp):
AATTTAATTATTAATTTTTTAAATTA
Found at i:103845573 original size:17 final size:17
Alignment explanation
Indices: 103845530--103845577 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
103845520 ACATTGTTTT
*
103845530 TTTATATA-ACATTTAA
1 TTTATATATTCATTTAA
**
103845546 AATAT-TATTCATTTAA
1 TTTATATATTCATTTAA
103845562 TTTATATATTCATTTA
1 TTTATATATTCATTTA
103845578 TATATAAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 2 0.08
16 13 0.52
17 10 0.40
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTATATATTCATTTAA
Found at i:103849081 original size:21 final size:21
Alignment explanation
Indices: 103849057--103849100 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
103849047 AAAATAGAGC
103849057 AACTAAAAACAAAAAAAATAA
1 AACTAAAAACAAAAAAAATAA
* *
103849078 AACTAAAAAGAAAAGAAATAA
1 AACTAAAAACAAAAAAAATAA
103849099 AA
1 AA
103849101 TCAATGATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.80, C:0.07, G:0.05, T:0.09
Consensus pattern (21 bp):
AACTAAAAACAAAAAAAATAA
Found at i:103850168 original size:6 final size:6
Alignment explanation
Indices: 103850147--103850179 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
103850137 GGTGGATGGT
103850147 GGAAAG GGAGAAG GGAAAG GGAAAG GGAAAG GG
1 GGAAAG GGA-AAG GGAAAG GGAAAG GGAAAG GG
103850180 GAGGGAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (6 bp):
GGAAAG
Found at i:103850174 original size:12 final size:13
Alignment explanation
Indices: 103850147--103850187 Score: 61
Period size: 12 Copynumber: 3.4 Consensus size: 13
103850137 GGTGGATGGT
103850147 GGAAAGGGAGAAG
1 GGAAAGGGAGAAG
103850160 GGAAAGGGA-AAG
1 GGAAAGGGAGAAG
103850172 GGAAAGGG-G-AG
1 GGAAAGGGAGAAG
103850183 GGAAA
1 GGAAA
103850188 AGTGTGTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 7 0.26
12 11 0.41
13 9 0.33
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (13 bp):
GGAAAGGGAGAAG
Found at i:103850790 original size:18 final size:18
Alignment explanation
Indices: 103850763--103850807 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
103850753 CAATGTTAAG
103850763 TTTTTGTAT-ATTTTTATGA
1 TTTTT-TATAATTTTTAT-A
103850782 TTTTTTATAATTTTTATA
1 TTTTTTATAATTTTTATA
*
103850800 TTTCTTAT
1 TTTTTTAT
103850808 GAGAAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.71
Consensus pattern (18 bp):
TTTTTTATAATTTTTATA
Found at i:103852313 original size:28 final size:27
Alignment explanation
Indices: 103852254--103852341 Score: 71
Period size: 28 Copynumber: 3.3 Consensus size: 27
103852244 CTATAAATGT
103852254 TATT-AAATTT-TAATAAAA-A-TAAAA
1 TATTAAAATTTATAA-AAAATATTAAAA
103852278 TATTAAAAATTTATAAAAAATATTAAAA
1 TATT-AAAATTTATAAAAAATATTAAAA
*
103852306 T-TGTAAAATATTATAAAATATA-TAGAAA
1 TAT-TAAAAT-TTATAAAAAATATTA-AAA
*
103852334 TATAAAAA
1 TATTAAAA
103852342 AATGTATAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
24 4 0.08
26 10 0.19
27 12 0.23
28 26 0.49
29 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (27 bp):
TATTAAAATTTATAAAAAATATTAAAA
Found at i:103852336 original size:20 final size:18
Alignment explanation
Indices: 103852272--103852361 Score: 76
Period size: 18 Copynumber: 4.8 Consensus size: 18
103852262 TTTAATAAAA
103852272 ATAAAATATTA-AAAATTT
1 ATAAAATATTATAAAA-TT
*
103852290 ATAAAA-AATATTAAAATT
1 ATAAAATATTA-TAAAATT
*
103852308 GTAAAATATTATAAAATAT
1 ATAAAATATTATAAAAT-T
* *
103852327 ATAGAAATATAAAAAAATGT
1 ATA-AAATATTATAAAAT-T
*
103852347 ATAAAATTTTATAAA
1 ATAAAATATTATAAA
103852362 GTCGTAAAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
17 3 0.05
18 19 0.33
19 19 0.33
20 16 0.28
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
ATAAAATATTATAAAATT
Found at i:103852884 original size:86 final size:83
Alignment explanation
Indices: 103852731--103852885 Score: 204
Period size: 85 Copynumber: 1.8 Consensus size: 83
103852721 GGCTTAATTT
* * * * **
103852731 ATTTTTTTTAAAATTTTGAGGGTCTTTTTGATGCATTTTAAAGTTCAAGTACTCAATTGAGTGAA
1 ATTTTTTTTAAAAGTTTGAGAGCCTTTTTGATGCATTTTAAAGTTCAAATACTCAATTGAGCAAA
103852796 AAAAGAAGTAGGGACTTA
66 AAAAGAAGTAGGGACTTA
*
103852814 ATTTTTTTTAAAGAAGTTTGAGAGCCTTTTTTATGCATTTTAAAAGTTCAAA-ATCTCAATTGAG
1 ATTTTTTTT-AA-AAGTTTGAGAGCCTTTTTGATGCATTTT-AAAGTTCAAATA-CTCAATTGAG
103852878 CAAAAAAA
62 CAAAAAAA
103852886 AAGGTGTTTA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
83 9 0.15
84 2 0.03
85 25 0.41
86 25 0.41
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.39
Consensus pattern (83 bp):
ATTTTTTTTAAAAGTTTGAGAGCCTTTTTGATGCATTTTAAAGTTCAAATACTCAATTGAGCAAA
AAAAGAAGTAGGGACTTA
Found at i:103853088 original size:19 final size:19
Alignment explanation
Indices: 103853064--103853103 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
103853054 TAATTTTATA
103853064 TAATTTTTAATTTAATAGT
1 TAATTTTTAATTTAATAGT
103853083 TAATTTTTAATTTAATAGT
1 TAATTTTTAATTTAATAGT
103853102 TA
1 TA
103853104 TTTCAACTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TAATTTTTAATTTAATAGT
Found at i:103856001 original size:19 final size:19
Alignment explanation
Indices: 103855977--103856017 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
103855967 ATTCTTTAAT
103855977 ATTCTTAATAATTTATTTA
1 ATTCTTAATAATTTATTTA
103855996 ATTCTTAATAATTTATTTA
1 ATTCTTAATAATTTATTTA
103856015 ATT
1 ATT
103856018 TAATCAGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTCTTAATAATTTATTTA
Found at i:103860752 original size:22 final size:23
Alignment explanation
Indices: 103860726--103860771 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
103860716 CAACCAAACC
103860726 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
103860748 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
103860771 A
1 A
103860772 CGTCATCGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:103860777 original size:23 final size:23
Alignment explanation
Indices: 103860733--103860777 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
103860723 ACCAATTCAA
*
103860733 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
103860756 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
103860778 CGTATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:103861936 original size:19 final size:19
Alignment explanation
Indices: 103861912--103861951 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
103861902 TTTCATGTTC
103861912 ATATGCAACAATTTCTATA
1 ATATGCAACAATTTCTATA
103861931 ATATGCAACAATTTCTATA
1 ATATGCAACAATTTCTATA
103861950 AT
1 AT
103861952 TTCATTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (19 bp):
ATATGCAACAATTTCTATA
Found at i:103863867 original size:8 final size:8
Alignment explanation
Indices: 103863854--103863911 Score: 64
Period size: 8 Copynumber: 7.0 Consensus size: 8
103863844 AAGTAATTTT
*
103863854 ATTTTTCA
1 ATTTTTAA
103863862 ATTTTTGAAA
1 ATTTTT--AA
103863872 ATTTTTAA
1 ATTTTTAA
103863880 ATTTTTAA
1 ATTTTTAA
*
103863888 AATTTTAA
1 ATTTTTAA
103863896 ATTATTT-A
1 ATT-TTTAA
103863904 ATTTTTAA
1 ATTTTTAA
103863912 TTTATTAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
7 3 0.07
8 30 0.70
9 3 0.07
10 7 0.16
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (8 bp):
ATTTTTAA
Found at i:103863877 original size:18 final size:17
Alignment explanation
Indices: 103863854--103863904 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 17
103863844 AAGTAATTTT
*
103863854 ATTTTTCAATTTTTGAAA
1 ATTTTTAAATTTTT-AAA
103863872 ATTTTTAAATTTTTAAA
1 ATTTTTAAATTTTTAAA
103863889 A-TTTTAAATTATTTAA
1 ATTTTTAAATT-TTTAA
103863905 TTTTTAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
16 9 0.29
17 9 0.29
18 13 0.42
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTTTAAATTTTTAAA
Found at i:103863909 original size:16 final size:16
Alignment explanation
Indices: 103863871--103863921 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
103863861 AATTTTTGAA
103863871 AATTTTTAAATT-TTT
1 AATTTTTAAATTATTT
*
103863886 AAAATTTTAAATTATTT
1 -AATTTTTAAATTATTT
*
103863903 AATTTTTAATTTA-TT
1 AATTTTTAAATTATTT
103863918 AATT
1 AATT
103863922 GTGCTTGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 6 0.19
16 22 0.71
17 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
AATTTTTAAATTATTT
Found at i:103864696 original size:19 final size:19
Alignment explanation
Indices: 103864664--103864709 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
103864654 CGTATTTTTA
103864664 TTAAATTT-TGATATAAATC
1 TTAAATTTATGATATAAA-C
*
103864683 TTAAATTTAT-ATATGAAC
1 TTAAATTTATGATATAAAC
*
103864701 TTTAATTTA
1 TTAAATTTA
103864710 ATGTACAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.38
19 14 0.58
20 1 0.04
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (19 bp):
TTAAATTTATGATATAAAC
Found at i:103865785 original size:11 final size:11
Alignment explanation
Indices: 103865763--103865817 Score: 76
Period size: 11 Copynumber: 5.1 Consensus size: 11
103865753 TATTAGAATC
*
103865763 TACCCATTCCT
1 TACCCATACCT
*
103865774 TGCCCATACCT
1 TACCCATACCT
103865785 TACCCATACCT
1 TACCCATACCT
*
103865796 TTCCCATACC-
1 TACCCATACCT
103865806 TACCCATACCT
1 TACCCATACCT
103865817 T
1 T
103865818 GGAAAGGTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.22, C:0.45, G:0.02, T:0.31
Consensus pattern (11 bp):
TACCCATACCT
Found at i:103865811 original size:21 final size:21
Alignment explanation
Indices: 103865762--103865818 Score: 87
Period size: 22 Copynumber: 2.7 Consensus size: 21
103865752 GTATTAGAAT
*
103865762 CTACCCATTCCTTGCCCATAC
1 CTACCCATACCTTGCCCATAC
*
103865783 CTTACCCATACCTTTCCCATAC
1 C-TACCCATACCTTGCCCATAC
103865805 CTACCCATACCTTG
1 CTACCCATACCTTG
103865819 GAAAGGTCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
21 13 0.41
22 19 0.59
ACGTcount: A:0.21, C:0.46, G:0.04, T:0.30
Consensus pattern (21 bp):
CTACCCATACCTTGCCCATAC
Found at i:103871429 original size:210 final size:210
Alignment explanation
Indices: 103871065--103871468 Score: 585
Period size: 210 Copynumber: 1.9 Consensus size: 210
103871055 AGGCTTAAGC
* * * *
103871065 TTTTGAATTTAAGAGGCTGCAAAAGTCTGAGGAGTTTTCCAACCAAAATTGGTATGGAATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTGAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
* * * *
103871130 GAAAAGTTAATTCTTTCAAGTTGCTCAAAACTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
66 GAAAAGTTAATTCTCTCAAGTTGCACAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
* * * * *
103871195 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGATCTACCT-TCTTCAATCGGAAAT
131 ATGCTTGCTAGAGCTTTATTTTGATGGGACAAACATTAAAGAGCTACCTAT-TTCAATCGGAAAT
103871259 CTCAGAAGACTTAAAG
195 CTCAGAAGACTTAAAG
* *
103871275 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAATCAAAATTGGAATGGAATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTGAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
* * *
103871340 GAAAAGTTAATTCTCTCAGGTTGCACCAATCTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
66 GAAAAGTTAATTCTCTCAAGTTGCACAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
* *** *
103871405 ATGCTTGCTAGAGCTTTATTTTGATGGGTCGGGCATTAAAGAGCTACCTATTTCAATTGGAAAT
131 ATGCTTGCTAGAGCTTTATTTTGATGGGACAAACATTAAAGAGCTACCTATTTCAATCGGAAAT
103871469 TTGAGCAGTC
Statistics
Matches: 170, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
210 169 0.99
211 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (210 bp):
TTTTGAATTTAAAAGACTGCAAAAGTCTGAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
GAAAAGTTAATTCTCTCAAGTTGCACAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
ATGCTTGCTAGAGCTTTATTTTGATGGGACAAACATTAAAGAGCTACCTATTTCAATCGGAAATC
TCAGAAGACTTAAAG
Found at i:103872674 original size:83 final size:84
Alignment explanation
Indices: 103872520--103872675 Score: 260
Period size: 83 Copynumber: 1.9 Consensus size: 84
103872510 AATCTCACTC
* * *
103872520 GCACACTTGACTAACCCAGTCTTTTGTGCCTAAATATTCGTTGATCAAATGGAGTCTTCTCCTCC
1 GCACACTTGACTAACCCAGTCTTTTGTGCCTAAACATTCGCTCATCAAATGGAGTCTTCTCCTCC
103872585 TTCATAGCAAATTTGACTT
66 TTCATAGCAAATTTGACTT
* *
103872604 GCACACTTGACTATCCCAGTCTTTTGTGCC-AAACATTTGCTCATCAAATGGAGTCTTCTCCTCC
1 GCACACTTGACTAACCCAGTCTTTTGTGCCTAAACATTCGCTCATCAAATGGAGTCTTCTCCTCC
103872668 TTCATAGC
66 TTCATAGC
103872676 CTCGGTTGAC
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
83 38 0.57
84 29 0.43
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.35
Consensus pattern (84 bp):
GCACACTTGACTAACCCAGTCTTTTGTGCCTAAACATTCGCTCATCAAATGGAGTCTTCTCCTCC
TTCATAGCAAATTTGACTT
Found at i:103872890 original size:26 final size:26
Alignment explanation
Indices: 103872855--103872905 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
103872845 CTTTGACATC
103872855 TTGCTGAGCTTGGAACTTGCACATTT
1 TTGCTGAGCTTGGAACTTGCACATTT
* *
103872881 TTGCTGAGCTTGTAGCTTGCACATT
1 TTGCTGAGCTTGGAACTTGCACATT
103872906 GGAAAGCTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.39
Consensus pattern (26 bp):
TTGCTGAGCTTGGAACTTGCACATTT
Found at i:103876715 original size:210 final size:207
Alignment explanation
Indices: 103876343--103876950 Score: 732
Period size: 210 Copynumber: 2.9 Consensus size: 207
103876333 AGGCTTAAGC
* * *
103876343 TTTTGAATTTAAGAGGCTGCAAAAGTCTGAGGAGTTTTCCAA-CAAAAATTGGTATGGAATCTTT
1 TTTTGAATTTAA-AGACTGCAAAAGTCTTAGGAGTTTTCCAATC-AAAATTGG-ATGGAATCTCT
* * *
103876407 TGAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTCAAAGCTTTCCAGAGATTGATAGGAAAATGG
63 TGAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTAAAAGCTTTCCAGAGATTGATAGCAAAATGG
* * * * * *
103876472 AATGTTTGTTGGAGCTTTGTTTTGATGGGACAAATATTAAAGATCTACCTTCTTCAATCGTAAAT
128 AATGCTTGCTAGAGCTTTATTTAGATGGGACAAACATTAAAGATCTACCTTCTTCAATCG-AAAT
*
103876537 CTCAGAAGACATAAAG
192 CTCAAAAGACATAAAG
*
103876553 TTTTGAATTTAGAAGACTGCAAAAGTCTTAGGAGTCTTCCAATCAAAATTGGAAT-GAGATCTCT
1 TTTTGAATTTA-AAGACTGCAAAAGTCTTAGGAGTTTTCCAATCAAAATTGG-ATGGA-ATCTCT
* * * * * *
103876617 TGAAAATTTGATTCTTTCAGGTTGCTCCAATCTTAAAATCTTTCTAGAGATTGATAGCAAAATAG
63 TGAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTAAAAGCTTTCCAGAGATTGATAGCAAAATGG
* * * * * * *
103876682 AATGCCTGCTAGATCTTTATTTAGATAGGACAAACATTAGAG-T-GATCTTCTTTAATCGAAAGT
128 AATGCTTGCTAGAGCTTTATTTAGATGGGACAAACATTAAAGATCTACCTTCTTCAATCGAAA-T
*
103876745 CTCAAAAGACTTAAAG
192 CTCAAAAGACATAAAG
*
103876761 TTTTG-A---AAAGACTGCAAAAGTCTTA-GACGTTTTCCAATCAAAATTGGATGGAATCCCTTG
1 TTTTGAATTTAAAGACTGCAAAAGTCTTAGGA-GTTTTCCAATCAAAATTGGATGGAATCTCTTG
*
103876821 AAAAGTTAATTCTTTCAGGTTGCTCAAATCTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGAA
65 AAAAGTTAATTCTTTCAGGTTGCTCAAATCTTAAAAGCTTTCCAGAGATTGATAGCAAAATGGAA
* ** * *
103876886 TGCTTGCAAGAGCTTTATTTAGATGGGACAGGCATTAAAGAGCTACCTAT-TTCAATTGGAAATC
130 TGCTTGCTAGAGCTTTATTTAGATGGGACAAACATTAAAGATCTACCT-TCTTCAA-TCGAAATC
103876950 T
193 T
103876951 GAGCAGTCTT
Statistics
Matches: 338, Mismatches: 50, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
202 102 0.30
203 38 0.11
204 11 0.03
205 6 0.02
207 4 0.01
208 32 0.09
209 3 0.01
210 140 0.41
211 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (207 bp):
TTTTGAATTTAAAGACTGCAAAAGTCTTAGGAGTTTTCCAATCAAAATTGGATGGAATCTCTTGA
AAAGTTAATTCTTTCAGGTTGCTCAAATCTTAAAAGCTTTCCAGAGATTGATAGCAAAATGGAAT
GCTTGCTAGAGCTTTATTTAGATGGGACAAACATTAAAGATCTACCTTCTTCAATCGAAATCTCA
AAAGACATAAAG
Found at i:103885453 original size:6 final size:6
Alignment explanation
Indices: 103885442--103885474 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
103885432 TCTTATATTT
*
103885442 TTTTAA TTTTAA TTTTAA TTTTAA TTTTGA TTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTT
103885475 CTCATTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (6 bp):
TTTTAA
Found at i:103887380 original size:40 final size:40
Alignment explanation
Indices: 103887325--103887407 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
103887315 ACATCTTCAG
*
103887325 TTGCACGTACTTTACCCGGGA-AACTTATATGCATGGATTC
1 TTGCACGTACTTTACCC-GGACAACTTATATGCATGAATTC
*
103887365 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
1 TTGCACGTACTTTACCCGGACAACTTATATGCATGAATTC
103887405 TTG
1 TTG
103887408 TGTGCATGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (40 bp):
TTGCACGTACTTTACCCGGACAACTTATATGCATGAATTC
Found at i:103890194 original size:40 final size:40
Alignment explanation
Indices: 103890139--103890221 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
103890129 ACATCTTCAG
* *
103890139 TTGCACGTACTTTACCCGGGA-AACTTATGTGCATGGATTC
1 TTGCACGTACTTTACCC-GGACAACCTATGTGCATGAATTC
103890179 TTGCACGTACTTTACCCGGACAACCTATGTGCATGAATTC
1 TTGCACGTACTTTACCCGGACAACCTATGTGCATGAATTC
103890219 TTG
1 TTG
103890222 TGTGCATGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (40 bp):
TTGCACGTACTTTACCCGGACAACCTATGTGCATGAATTC
Found at i:103899255 original size:210 final size:210
Alignment explanation
Indices: 103898876--103899281 Score: 591
Period size: 210 Copynumber: 1.9 Consensus size: 210
103898866 AGGCTTAAGC
* * * *
103898876 TTTTGAATTTAAGAGGCTGCAAAAGTCTGAGGAGTTTTCCAACCAAAATTGGAATGCTATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTGAGGAGTCTTCCAACCAAAATTGGAATGCAATCTCTT
* *
103898941 GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
66 GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
** * * * *
103899006 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCT-TCTTCAATGGGAAAT
131 ATGCCTGCTAGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTAT-TTCAATGGGAAAT
103899070 CTTGGAAGACTTAAAG
195 CTTGGAAGACTTAAAG
* *
103899086 TTTTGAATTTAAAAGACTGCAAAAGTCTTG-GGAGTCTTCCAATCAAAATTGGAATGGAATCTCT
1 TTTTGAATTTAAAAGACTGCAAAAGTC-TGAGGAGTCTTCCAACCAAAATTGGAATGCAATCTCT
* *
103899150 TGAAAAGTTAATTCTTTCAGGTTGCTCCAATCTTAAAAGCTTTCCAGAGATTGATGGCAAAATGG
65 TGAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGG
* *** *
103899215 AATGCCTGCTAGAGCTTTATTTAGATGGGTCGGGCATTAAAGAGCTACCTATTTCAATTGGAAAT
130 AATGCCTGCTAGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTATTTCAATGGGAAAT
103899280 CT
195 CT
103899282 GAGTAGTCTT
Statistics
Matches: 173, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
210 170 0.98
211 3 0.02
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (210 bp):
TTTTGAATTTAAAAGACTGCAAAAGTCTGAGGAGTCTTCCAACCAAAATTGGAATGCAATCTCTT
GAAAAGTTAATTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAGATTGATGGCAAAATGGA
ATGCCTGCTAGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTATTTCAATGGGAAATC
TTGGAAGACTTAAAG
Found at i:103903981 original size:24 final size:24
Alignment explanation
Indices: 103903951--103904003 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
103903941 CTATGTTATA
103903951 ATATTTGTAACTAAAATTAATATT
1 ATATTTGTAACTAAAATTAATATT
*
103903975 ATATTTGTATCTAAAATTAATATT
1 ATATTTGTAACTAAAATTAATATT
103903999 ATATT
1 ATATT
103904004 ATAAAACGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (24 bp):
ATATTTGTAACTAAAATTAATATT
Found at i:103904717 original size:14 final size:15
Alignment explanation
Indices: 103904677--103904718 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
103904667 TAATTTGGAT
103904677 TAATTTATTTAAATA
1 TAATTTATTTAAATA
* *
103904692 TGATTTAATTAAA-A
1 TAATTTATTTAAATA
*
103904706 TAATTTTTTTAAA
1 TAATTTATTTAAA
103904719 GGGAAATAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
TAATTTATTTAAATA
Found at i:103907058 original size:21 final size:21
Alignment explanation
Indices: 103907033--103907078 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
103907023 TAGAGCGGAT
*
103907033 GCAGCAGCGAAGGAGGCAGCG
1 GCAGCAGCGAAGGAGGCAGCA
103907054 GCAGCAGCGAAGGAGGCAGCA
1 GCAGCAGCGAAGGAGGCAGCA
103907075 GCAG
1 GCAG
103907079 AGCAGAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.30, C:0.24, G:0.46, T:0.00
Consensus pattern (21 bp):
GCAGCAGCGAAGGAGGCAGCA
Found at i:103909085 original size:32 final size:31
Alignment explanation
Indices: 103909024--103909085 Score: 72
Period size: 32 Copynumber: 1.9 Consensus size: 31
103909014 AATTTGATTC
* *
103909024 TCAATTTAAAAAAAAAAACTCAAATTTGACCA
1 TCAATTTAAAAAAAAAAAC-AAAAGTTGACCA
103909056 TCAACTTTAAAAAAAAATAA-AAAAGTTGAC
1 TCAA-TTTAAAAAAAAA-AACAAAAGTTGAC
103909086 ATGATATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
32 12 0.46
33 12 0.46
34 2 0.08
ACGTcount: A:0.58, C:0.13, G:0.05, T:0.24
Consensus pattern (31 bp):
TCAATTTAAAAAAAAAAACAAAAGTTGACCA
Found at i:103913740 original size:17 final size:18
Alignment explanation
Indices: 103913720--103913753 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
103913710 AAGTGAATTG
103913720 AAATTG-AAAAATTAAAT
1 AAATTGCAAAAATTAAAT
*
103913737 AAATTGCAGAAATTAAA
1 AAATTGCAAAAATTAAA
103913754 ATGAGGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.62, C:0.03, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTGCAAAAATTAAAT
Found at i:103914477 original size:10 final size:11
Alignment explanation
Indices: 103914450--103914499 Score: 54
Period size: 10 Copynumber: 4.9 Consensus size: 11
103914440 TGAAATTCTA
103914450 AAAGATAAATG
1 AAAGATAAATG
*
103914461 CAA-ATAAAT-
1 AAAGATAAATG
*
103914470 AAAGAT-AATT
1 AAAGATAAATG
103914480 AAAGATAAATG
1 AAAGATAAATG
103914491 AAA-ATAAAT
1 AAAGATAAAT
103914500 CCTAAAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
9 5 0.15
10 20 0.61
11 8 0.24
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (11 bp):
AAAGATAAATG
Found at i:103917932 original size:132 final size:132
Alignment explanation
Indices: 103917710--103917949 Score: 356
Period size: 132 Copynumber: 1.8 Consensus size: 132
103917700 AGAGGCGATA
* * * * *
103917710 TTCGATGTTTGGCAATTCGGGGAATCGTGCCCTACCGTGCTGGGTTGCAATTTCTCGTTTGCTCA
1 TTCGATGTTTAGCAATTCGGGGAATAGTGCCCTACCGTGCCGGGTTGCAATTCCTCATTTGCTCA
* * *
103917775 AAATAATCGAATGTCTCTTTAGAATTTCATTCATGTTTTCTAAAAACTTTTTAAAACGAAGGAAA
66 AAATAATCGAATATCCCTTCAGAATTTCATTCATGTTTTCTAAAAACTTTTTAAAACGAAGGAAA
103917840 TG
131 TG
* *
103917842 TTCGATGTTTAGCAATTCGGGGAATAGTGCCCTATCGTGCCGGGTTGCAATCTCCT-ATTTGTTC
1 TTCGATGTTTAGCAATTCGGGGAATAGTGCCCTACCGTGCCGGGTTGCAAT-TCCTCATTTGCTC
* *
103917906 AAAATAATCGAATATCCCTTCGGAATTTCATTCGTGTTTTCTAA
65 AAAATAATCGAATATCCCTTCAGAATTTCATTCATGTTTTCTAA
103917950 GGCGAGGCAA
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
132 92 0.97
133 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.37
Consensus pattern (132 bp):
TTCGATGTTTAGCAATTCGGGGAATAGTGCCCTACCGTGCCGGGTTGCAATTCCTCATTTGCTCA
AAATAATCGAATATCCCTTCAGAATTTCATTCATGTTTTCTAAAAACTTTTTAAAACGAAGGAAA
TG
Found at i:103932414 original size:210 final size:209
Alignment explanation
Indices: 103932035--103932657 Score: 899
Period size: 210 Copynumber: 3.0 Consensus size: 209
103932025 AGTTCTTACG
* * * *
103932035 AGGCTTAAGCTTTTGAATTTAAGAGGCTGCAAAAGTCTCAGGAGTTTTCCAACCAAAATTGGAAT
1 AGGCTTAAG-TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAAT
*
103932100 GGAATCTCTTGAAATGTTAATTCTTTCAGGTTGCTCAAAAT-TTCAAAGCTTTCCAGAGATTGAT
65 GGAATCTCTTGAAAAGTTAATTCTTTCAGGTTGCTC-AAATCTTCAAAGCTTTCCAGAGATTGAT
* ** *
103932164 GGGAAAATGGAATGTTTGTTGGAGCTTTGTTTTTATGGGACAAAAATTAAAGAGCTACCTTCTTC
129 GGGAAAATGGAATGTTTGTTGGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTTCTTC
103932229 AATCGGAAATCTCAGA
194 AATCGGAAATCTCAGA
* *
103932245 AGGCTTGAAGTTTTGAATTTAAAAGACTGTAAAAGTTTTAGGAGTCTTCCAACCAAAATTGGAAT
1 AGGCTT-AAGTTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAAT
* *
103932310 GGAATCTCTTGAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCCTGCCAGAGATTGATG
65 GGAATCTCTTGAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATG
* *
103932375 GGAAAATGGAATGTTTATTGGAGCTTTATTTAGATGGGACAAACATTAAAGATCTACCTTCTTCA
130 GGAAAATGGAATGTTTGTTGGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTTCTTCA
*
103932440 ATCGAAAATCTCAGA
195 ATCGGAAATCTCAGA
* * *
103932455 AGACTTAAAGTTTTGAATCTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAATCAAAATTGGAAT
1 AGGCTT-AAGTTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAAT
* * * *
103932520 GGAATCTCTTAAAAAGTTAATTCTTTCAGGTTGCTCCAATCTTAAAAGGTTTCCAGAGATTGATG
65 GGAATCTCTTGAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATG
* ** * * ***
103932585 GCAAAATGGAATGCCTGCTAGAGCTTTATTTAGATGGGACGGCCATTAAAGAGCTACCTAT-TTC
130 GGAAAATGGAATGTTTGTTGGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCT-TCTTC
*
103932649 AATTGGAAA
194 AATCGGAAA
103932658 CCTGAGCAGT
Statistics
Matches: 370, Mismatches: 40, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
209 4 0.01
210 362 0.98
211 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32
Consensus pattern (209 bp):
AGGCTTAAGTTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATG
GAATCTCTTGAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGG
GAAAATGGAATGTTTGTTGGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTTCTTCAA
TCGGAAATCTCAGA
Found at i:103935047 original size:16 final size:16
Alignment explanation
Indices: 103935038--103935071 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
103935028 TTTTATATTC
103935038 TTTTAATTTTAATTTA
1 TTTTAATTTTAATTTA
103935054 TTTTAATTTT--TTTA
1 TTTTAATTTTAATTTA
103935068 TTTT
1 TTTT
103935072 TATAGTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
16 10 0.56
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTAATTTTAATTTA
Found at i:103935800 original size:148 final size:148
Alignment explanation
Indices: 103935641--103935912 Score: 352
Period size: 148 Copynumber: 1.8 Consensus size: 148
103935631 TTTAGTCACA
* * * * * *
103935641 TTTTTTTTAATACAAATGTTTAGAATTA-CTTATAGTCTC-TCTTCAACCTTTAAATAGGAGGGT
1 TTTTTTTTAATACAAATGTCTAGAATTATC-TACAGTCTCTTC-CCAACCGTTAAATAAGAGGAT
**
103935704 AAATAGGTTTCAACGCACTAGAAAC-CACAACCTCCTACATAAGCAACAATGTTGATACCAATCA
64 AAATAGGTTTCAACGCACTAG-AACTCACAACCTCCTACATAAGCAACAATGTCAATACCAATCA
103935768 AGTTAGAACTCAATCATAATT
128 AGTTAGAACTCAATCATAATT
*
103935789 TTTTTTTTAATACAAATGTCTAGAATTATCTGCAGTCTCTTCCCAACCGTTAAATAAGAGGATAA
1 TTTTTTTTAATACAAATGTCTAGAATTATCTACAGTCTCTTCCCAACCGTTAAATAAGAGGATAA
** * * ** *
103935854 ATTTGTTTCAACGCACTCGAACTCACATCCTCCTGTATAGGCAACAATGTCAATACCAA
66 ATAGGTTTCAACGCACTAGAACTCACAACCTCCTACATAAGCAACAATGTCAATACCAA
103935913 CCAAACTAAG
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
147 3 0.03
148 99 0.94
149 3 0.03
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (148 bp):
TTTTTTTTAATACAAATGTCTAGAATTATCTACAGTCTCTTCCCAACCGTTAAATAAGAGGATAA
ATAGGTTTCAACGCACTAGAACTCACAACCTCCTACATAAGCAACAATGTCAATACCAATCAAGT
TAGAACTCAATCATAATT
Found at i:103937295 original size:19 final size:19
Alignment explanation
Indices: 103937271--103937316 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
103937261 GGGAAAGTCT
103937271 AATGCAAAT-AATGCAATG
1 AATGCAAATGAATGCAATG
* *
103937289 CAATGCAAATGCATGGAATG
1 -AATGCAAATGAATGCAATG
103937309 AATGCAAA
1 AATGCAAA
103937317 AGAAAGAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20
Consensus pattern (19 bp):
AATGCAAATGAATGCAATG
Found at i:103939630 original size:6 final size:6
Alignment explanation
Indices: 103939614--103939732 Score: 61
Period size: 6 Copynumber: 20.5 Consensus size: 6
103939604 ATAATATAAT
* * *
103939614 ATAGTA ATAGTA GTAGTA ACAGTA ATA--A A-AATA ATAGTA ATA--A
1 ATAGTA ATAGTA ATAGTA ATAGTA ATAGTA ATAGTA ATAGTA ATAGTA
* * * * * *
103939657 A-AGTA GTACTA ATAGTA ATAATA ATAATAA TATAATA ATAGTA ATAATA
1 ATAGTA ATAGTA ATAGTA ATAGTA ATAGT-A -ATAGTA ATAGTA ATAGTA
* * * *
103939706 ATAATA ATAATA ATAATA ATAATA ATA
1 ATAGTA ATAGTA ATAGTA ATAGTA ATA
103939733 ATGACGCAAG
Statistics
Matches: 93, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
3 2 0.02
4 4 0.04
5 3 0.03
6 77 0.83
7 2 0.02
8 5 0.05
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (6 bp):
ATAGTA
Found at i:103939649 original size:3 final size:3
Alignment explanation
Indices: 103939636--103939734 Score: 121
Period size: 3 Copynumber: 33.3 Consensus size: 3
103939626 GTAGTAACAG
* * * * *
103939636 TAA TAA AAA TAA TAG TAA TAA -AA GTAG TAC TAA TAG TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
*
103939681 TAA TAA T-A TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
103939728 TAA TAA T
1 TAA TAA T
103939735 GACGCAAGAA
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
2 4 0.05
3 77 0.94
4 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:103939655 original size:9 final size:9
Alignment explanation
Indices: 103939599--103939732 Score: 127
Period size: 9 Copynumber: 15.2 Consensus size: 9
103939589 GATAATATGT
103939599 TAGTAATAA
1 TAGTAATAA
103939608 TA-TAAT-A
1 TAGTAATAA
*
103939615 TAGTAATAG
1 TAGTAATAA
*
103939624 TAGTAGTAA
1 TAGTAATAA
*
103939633 CAGTAATAA
1 TAGTAATAA
103939642 -A--AATAA
1 TAGTAATAA
103939648 TAGTAATAAAA
1 TAGTAAT--AA
*
103939659 GTAGTACTAA
1 -TAGTAATAA
103939669 TAGTAATAA
1 TAGTAATAA
*
103939678 TAATAATAA
1 TAGTAATAA
103939687 TA-TAATAA
1 TAGTAATAA
103939695 TAGTAATAA
1 TAGTAATAA
*
103939704 TAATAATAA
1 TAGTAATAA
*
103939713 TAATAATAA
1 TAGTAATAA
*
103939722 TAATAATAA
1 TAGTAATAA
103939731 TA
1 TA
103939733 ATGACGCAAG
Statistics
Matches: 107, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
6 5 0.05
7 4 0.04
8 17 0.16
9 71 0.66
10 2 0.02
11 2 0.02
12 6 0.06
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.32
Consensus pattern (9 bp):
TAGTAATAA
Found at i:103939836 original size:17 final size:18
Alignment explanation
Indices: 103939814--103939862 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
103939804 GTTAATAAGG
103939814 ATAATAAATAATAAA-TA
1 ATAATAAATAATAAATTA
*
103939831 ATAAT-AATACTAAATTA
1 ATAATAAATAATAAATTA
103939848 ATAATAAAGTAATAA
1 ATAATAAA-TAATAA
103939863 GCAAATAGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 8 0.30
17 12 0.44
18 2 0.07
19 5 0.19
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (18 bp):
ATAATAAATAATAAATTA
Found at i:103940278 original size:12 final size:11
Alignment explanation
Indices: 103940252--103940303 Score: 59
Period size: 12 Copynumber: 4.4 Consensus size: 11
103940242 GAAATAACAG
*
103940252 TAATAAAAACAA
1 TAATAATAA-AA
103940264 TAATAATAAATA
1 TAATAATAAA-A
103940276 TAATAATAGAAA
1 TAATAATA-AAA
103940288 TAATAATGAAAA
1 TAATAAT-AAAA
103940300 TAAT
1 TAAT
103940304 TAATTTGAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
11 1 0.03
12 32 0.89
13 3 0.08
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:103940293 original size:15 final size:15
Alignment explanation
Indices: 103940236--103940294 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
103940226 GTCGATAAGG
*
103940236 ATAATAGAAATAACA
1 ATAATAGAAATAATA
* * *
103940251 GTAATAAAAACAATA
1 ATAATAGAAATAATA
103940266 ATAAT--AAAT-ATA
1 ATAATAGAAATAATA
103940278 ATAATAGAAATAATA
1 ATAATAGAAATAATA
103940293 AT
1 AT
103940295 GAAAATAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
12 8 0.23
13 3 0.09
14 4 0.11
15 20 0.57
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.25
Consensus pattern (15 bp):
ATAATAGAAATAATA
Found at i:103942577 original size:15 final size:15
Alignment explanation
Indices: 103942557--103942585 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
103942547 AATTCAATTT
103942557 ATAATTTGTTGCTAC
1 ATAATTTGTTGCTAC
103942572 ATAATTTGTTGCTA
1 ATAATTTGTTGCTA
103942586 ATATTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (15 bp):
ATAATTTGTTGCTAC
Found at i:103943341 original size:6 final size:6
Alignment explanation
Indices: 103943323--103943360 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
103943313 ACTTGTTGTA
*
103943323 TTTTAT TTATAT TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
103943361 AATAATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:103943492 original size:17 final size:17
Alignment explanation
Indices: 103943470--103943503 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
103943460 CTTTATAATA
* *
103943470 TTTTTATAATATTTTAT
1 TTTTTAAAAAATTTTAT
103943487 TTTTTAAAAAATTTTAT
1 TTTTTAAAAAATTTTAT
103943504 GACCTTTAGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTAAAAAATTTTAT
Found at i:103943576 original size:43 final size:43
Alignment explanation
Indices: 103943515--103943731 Score: 240
Period size: 43 Copynumber: 5.0 Consensus size: 43
103943505 ACCTTTAGCG
* * * **
103943515 GCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGCCATGGTCTTTA
1 GCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGACCTTTA
* *
103943558 GCGGCGTTTGTGGAAAAAGCGCCGCTAAAAGTCATGGCCTTTA
1 GCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGACCTTTA
* ** * * *
103943601 GCGGCGCTTTTTCCATAAA-CGCCGCTAAAAGTCTTGACCTTTA
1 GCGGCG-TTTGTGGAAAAAGCGCCGCTAAAGGTCATGACCTTTA
*
103943644 GCGGCGTTTGT-GAATAAAGCGCCGCTAAAGATCATGACCTTTA
1 GCGGCGTTTGTGGAA-AAAGCGCCGCTAAAGGTCATGACCTTTA
** * *
103943687 GCGGCGTTTGTGGGGAAAGCGCCGCTAAAGATCATGACATTTA
1 GCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGACCTTTA
103943730 GC
1 GC
103943732 TTCGTTTTTT
Statistics
Matches: 150, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
41 1 0.01
42 7 0.05
43 133 0.89
44 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (43 bp):
GCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGACCTTTA
Found at i:103945108 original size:42 final size:43
Alignment explanation
Indices: 103945039--103945126 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 43
103945029 GGTTTTGGGG
* *
103945039 ATTCTAGGGCTGGAATAAGACTGTTTGGCTGCAGAGATATAGC
1 ATTCTAGGGCTGGAATAAGACTATTTGGCAGCAGAGATATAGC
* *
103945082 ATTCT-GGGCTGGAAT-AGAACTATTTGGCAGCAGGGATATGGC
1 ATTCTAGGGCTGGAATAAG-ACTATTTGGCAGCAGAGATATAGC
103945124 ATT
1 ATT
103945127 TTGGTGCACA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
41 2 0.05
42 33 0.82
43 5 0.12
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (43 bp):
ATTCTAGGGCTGGAATAAGACTATTTGGCAGCAGAGATATAGC
Found at i:103945229 original size:11 final size:11
Alignment explanation
Indices: 103945213--103945257 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
103945203 ATATTTAACT
103945213 AAAATAAAATA
1 AAAATAAAATA
103945224 AAAATAAAAT-
1 AAAATAAAATA
103945234 AAAAT--AATA
1 AAAATAAAATA
*
103945243 AATAATAAAAGA
1 AA-AATAAAATA
103945255 AAA
1 AAA
103945258 GAAAGGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
8 3 0.10
9 2 0.07
10 8 0.28
11 11 0.38
12 5 0.17
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:103945233 original size:16 final size:17
Alignment explanation
Indices: 103945212--103945284 Score: 66
Period size: 16 Copynumber: 4.5 Consensus size: 17
103945202 AATATTTAAC
103945212 TAAAATAAAATAA-AAA
1 TAAAATAAAATAATAAA
103945228 TAAAATAAAATAATAAA
1 TAAAATAAAATAATAAA
*
103945245 T--AATAAAA-GA-AAA
1 TAAAATAAAATAATAAA
* **
103945258 GAAAGGAAAATAATAAA
1 TAAAATAAAATAATAAA
103945275 TAAAAATAAA
1 T-AAAATAAA
103945285 GATTGGGTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
13 3 0.07
14 1 0.02
15 12 0.28
16 14 0.33
17 7 0.16
18 6 0.14
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (17 bp):
TAAAATAAAATAATAAA
Found at i:103945251 original size:20 final size:19
Alignment explanation
Indices: 103945220--103945257 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
103945210 ACTAAAATAA
*
103945220 AATAAAAATAAAATAAAAT
1 AATAAAAATAAAAGAAAAT
103945239 AATAAATAATAAAAGAAAA
1 AATAAA-AATAAAAGAAAA
103945258 GAAAGGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (19 bp):
AATAAAAATAAAAGAAAAT
Found at i:103956116 original size:130 final size:128
Alignment explanation
Indices: 103955769--103956184 Score: 478
Period size: 130 Copynumber: 3.2 Consensus size: 128
103955759 TCAAATTTCT
* *
103955769 AAACATCGAGCATTGCC-TCATTTTTAGAA-TTTTAAAAACATGAGTGAAA-TTCTAAAGGGATA
1 AAACATCGAGCATTGCCTTCATTTTAAGAATTTTTAAAAACATGAGTGAAATTTC-AAAGGAATA
* * * * ** * *
103955831 TTTGATTATTTTGAATAAACGGGAAATTGCAACCCAGCACGGTAGGGCACTATTCCCCGAGTTGC
65 TTCGATTGTTTT-AACAAACGAGAAATCACAACCCAGCACGGTAGGGCACGATT-CCCGAATTGC
103955896 C
128 C
* * * * * **
103955897 AAACATCGAACATTACCTTCGTTTTGAGGAGTTTTTAGAAAACATGACCGAAATTTCAAAGGAAT
1 AAACATCGAGCATTGCCTTCATTTT-AAGAATTTTTA-AAAACATGAGTGAAATTTCAAAGGAAT
* * *
103955962 ATTCGATTGTTTTGACAAATGAGAAATCACAACCCAGCACGATAGGGCACGATTCCCGAATTGCC
64 ATTCGATTGTTTTAACAAACGAGAAATCACAACCCAGCACGGTAGGGCACGATTCCCGAATTGCC
* *
103956027 AAACATCGAGTATTGCCTTCATTTTAAAGAATTTTTAAAGACATGAGTGAAATTTCAAAGGAATA
1 AAACATCGAGCATTGCCTTCATTTT-AAGAATTTTTAAAAACATGAGTGAAATTTCAAAGGAATA
* *
103956092 TTCGATTGTTTTAAACGAACGAGAAATCACAACCCAGCACGGTAGGGCACGATTCCTCGAATTGT
65 TTCGATTGTTTT-AACAAACGAGAAATCACAACCCAGCACGGTAGGGCACGATTCC-CGAATTGC
*
103956157 T
128 C
* * * *
103956158 AAACATTGAACATTGCTTTCGTTTTAA
1 AAACATCGAGCATTGCCTTCATTTTAA
103956185 AAAAAATTAA
Statistics
Matches: 240, Mismatches: 41, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
128 15 0.06
129 43 0.18
130 83 0.35
131 65 0.27
132 31 0.13
133 3 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (128 bp):
AAACATCGAGCATTGCCTTCATTTTAAGAATTTTTAAAAACATGAGTGAAATTTCAAAGGAATAT
TCGATTGTTTTAACAAACGAGAAATCACAACCCAGCACGGTAGGGCACGATTCCCGAATTGCC
Found at i:103964014 original size:32 final size:32
Alignment explanation
Indices: 103963952--103964030 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 32
103963942 TATTATTTTA
*
103963952 TTATATATTATACTTTACTCCTTATGATATTT
1 TTATATATTATACTTTACTCCTTATCATATTT
*
103963984 TTATATATTATA-TTATACAT-TTTATCATATTT
1 TTATATATTATACTT-TAC-TCCTTATCATATTT
* *
103964016 TTTTACATTAT-CTTT
1 TTATATATTATACTTT
103964031 GTTTTATTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
31 3 0.08
32 36 0.90
33 1 0.03
ACGTcount: A:0.29, C:0.10, G:0.01, T:0.59
Consensus pattern (32 bp):
TTATATATTATACTTTACTCCTTATCATATTT
Found at i:103966484 original size:25 final size:25
Alignment explanation
Indices: 103966437--103966506 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
103966427 TATTATATCT
*
103966437 ATAAAGTGTTTATTTTTTAAAAAATA
1 ATAAAGTGTTTA-TTTTAAAAAAATA
103966463 ATAAAGTGTTTATTTTAAAAAAATA
1 ATAAAGTGTTTATTTTAAAAAAATA
* *
103966488 ATAAAATGTTTAATTTAAA
1 ATAAAGTGTTTATTTTAAA
103966507 TATTGATAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 29 0.71
26 12 0.29
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (25 bp):
ATAAAGTGTTTATTTTAAAAAAATA
Found at i:103966744 original size:18 final size:18
Alignment explanation
Indices: 103966717--103966751 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
103966707 ACGTGGCAGT
103966717 CCAACCAGATTTTAAGTG
1 CCAACCAGATTTTAAGTG
*
103966735 CCAACTAGATTTTAAGT
1 CCAACCAGATTTTAAGT
103966752 ATATCTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACCAGATTTTAAGTG
Found at i:103967837 original size:18 final size:18
Alignment explanation
Indices: 103967814--103967848 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
103967804 TAACAGATAT
103967814 ACTTAAAATCTAGTTGGC
1 ACTTAAAATCTAGTTGGC
103967832 ACTTAAAATCTAGTTGG
1 ACTTAAAATCTAGTTGG
103967849 ACTGCCACGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (18 bp):
ACTTAAAATCTAGTTGGC
Found at i:103983010 original size:210 final size:210
Alignment explanation
Indices: 103982648--103983200 Score: 865
Period size: 210 Copynumber: 2.6 Consensus size: 210
103982638 AGGCTTAAGC
* * * * *
103982648 TTTTGAATTTAAGAGGCTGCAAAAGTCTGAGGAGTTTTCCAACCAAAATTAGAATGGAATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
* * *
103982713 GAAATGTTAAGTCTTTCAGGTTGCTCAAAACTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
66 GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
* *
103982778 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTATCTTCTTCAATCAGAAATC
131 ATGTTTATTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCAGAAATC
*
103982843 TCAGAAGACTTGAAG
196 TCAGAAGACTTAAAG
* *
103982858 TTTTGAATTTAAAAGACTGTAAAAGTCTTAGGAGTCTTCCAACCAAATTTGGAATGGAATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
* *
103982923 GAAAAGTTAATTCTTTCAAGTTGCTCAAATCTTCAAAGCTTGCCAGAGATTGATGGGAAAATGGA
66 GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
*
103982988 ATGTTTATTGTAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCAGAAATC
131 ATGTTTATTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCAGAAATC
*
103983053 TTAGAAGACTTAAAG
196 TCAGAAGACTTAAAG
* * *
103983068 TTTTGAATCTAAAAGACTGCAAAAGTCTTAAGAGTCTTCCAATCAAAATTGGAATGGAATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
* * * * *
103983133 AAAAAGTTAATTCTTTCAGGTTGCTCCAATCTT-AGAAGGTTTCCAAAGATTGATGGCAAAATGG
66 GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCA-AAGCTTTCCAGAGATTGATGGGAAAATGG
103983197 AATG
130 AATG
103983201 CCTGCTAGAG
Statistics
Matches: 313, Mismatches: 29, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
209 1 0.00
210 312 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (210 bp):
TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
ATGTTTATTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCAGAAATC
TCAGAAGACTTAAAG
Found at i:103983237 original size:210 final size:209
Alignment explanation
Indices: 103982648--103983263 Score: 831
Period size: 210 Copynumber: 2.9 Consensus size: 209
103982638 AGGCTTAAGC
* * * * *
103982648 TTTTGAATTTAAGAGGCTGCAAAAGTCTGAGGAGTTTTCCAACCAAAATTAGAATGGAATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
* * *
103982713 GAAATGTTAAGTCTTTCAGGTTGCTCAAAACTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
66 GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
* * *
103982778 ATGTTTGTTGGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTATCTTCTTCAATCAGAAATC
131 ATG-TTGATAGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCAGAAATC
*
103982843 TCAGAAGACTTGAAG
195 TCAGAAGACTTAAAG
* *
103982858 TTTTGAATTTAAAAGACTGTAAAAGTCTTAGGAGTCTTCCAACCAAATTTGGAATGGAATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
* *
103982923 GAAAAGTTAATTCTTTCAAGTTGCTCAAATCTTCAAAGCTTGCCAGAGATTGATGGGAAAATGGA
66 GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
* *
103982988 ATGTTTATTGTAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCAGAAATC
131 ATGTTGATAG-AGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCAGAAATC
*
103983053 TTAGAAGACTTAAAG
195 TCAGAAGACTTAAAG
* * *
103983068 TTTTGAATCTAAAAGACTGCAAAAGTCTTAAGAGTCTTCCAATCAAAATTGGAATGGAATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
* * * * *
103983133 AAAAAGTTAATTCTTTCAGGTTGCTCCAATCTT-AGAAGGTTTCCAAAGATTGATGGCAAAATGG
66 GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCA-AAGCTTTCCAGAGATTGATGGGAAAATGG
* * * * * * *** **
103983197 AATGCCTGCTAGAGCTCTATTTAGATGGGTCGGGCATTAAAGAGCTACCTAT-TTCAATTGGAAA
130 AATG-TTGATAGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCT-TCTTCAATCAGAAA
103983261 TCT
193 TCT
103983264 GAGCAGTCTT
Statistics
Matches: 359, Mismatches: 43, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
209 5 0.01
210 350 0.97
211 4 0.01
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.32
Consensus pattern (209 bp):
TTTTGAATTTAAAAGACTGCAAAAGTCTTAGGAGTCTTCCAACCAAAATTGGAATGGAATCTCTT
GAAAAGTTAATTCTTTCAGGTTGCTCAAATCTTCAAAGCTTTCCAGAGATTGATGGGAAAATGGA
ATGTTGATAGAGCTTTGTTTTGATGGGACAAACATTAAAGAGCTACCTTCTTCAATCAGAAATCT
CAGAAGACTTAAAG
Found at i:103987583 original size:35 final size:35
Alignment explanation
Indices: 103987543--103987609 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
103987533 AATTTTAAAA
103987543 AATGTTGTAAAA-TTATTTTTTTGTATTTACAATAT
1 AATGTTGTAAAAGTTA-TTTTTTGTATTTACAATAT
*
103987578 AATGTTTTAAAAGTTATTTTTTGTATTTACAA
1 AATGTTGTAAAAGTTATTTTTTGTATTTACAA
103987610 AATTTTTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 27 0.90
36 3 0.10
ACGTcount: A:0.34, C:0.03, G:0.09, T:0.54
Consensus pattern (35 bp):
AATGTTGTAAAAGTTATTTTTTGTATTTACAATAT
Found at i:103988870 original size:10 final size:10
Alignment explanation
Indices: 103988851--103988887 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
103988841 TTAAATTTTA
103988851 AAAGATAAAT
1 AAAGATAAAT
103988861 ACAA-ATAAAT
1 A-AAGATAAAT
103988871 AAAGATAAAT
1 AAAGATAAAT
103988881 AAAGATA
1 AAAGATA
103988888 TATGCTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.70, C:0.03, G:0.08, T:0.19
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:104000173 original size:210 final size:210
Alignment explanation
Indices: 103999805--104000210 Score: 517
Period size: 210 Copynumber: 1.9 Consensus size: 210
103999795 AGGCTTAAGC
** * * *
103999805 TTTTGAATTTAGGAGGCTGCAAAAGTCTGAGGAGTTTTCCAACCAGAATTAGAATGGAATCCCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTAAGGAGTTTTCCAACCAAAATTAGAATGGAATCCCTT
* * * *
103999870 GAAATGTTAACTCTTTTAGGTTGCTCAAAACTTCAAAGCTTTCCAGAAATTGATGGGAAAATGGA
66 GAAAAGTTAACTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAAATTGATGGCAAAATGGA
** *** * * *
103999935 ATGTTTGTTGGAGGTTTGTTTTGATGGGACAAACATTAAAGAGCTACCT-TCTTCAATCGAAAAT
131 ATGCCTGCAAGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTAT-TTCAATCGAAAAT
103999999 CTCAGAAGACTTGAAG
195 CTCAGAAGACTTGAAG
* * *
104000015 TTTTGAATTTAAAAGACTGTAAAAGTCTAAGGAGTTTTCCAACCAAAATTGGAATGGAATCTCTT
1 TTTTGAATTTAAAAGACTGCAAAAGTCTAAGGAGTTTTCCAACCAAAATTAGAATGGAATCCCTT
* * * * * *
104000080 GAAAAGTTAATTCTTTCAGGTTGTTCCAATCTTAAAAGGTTTCCAGAGATTGATGGCAAAATGGA
66 GAAAAGTTAACTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAAATTGATGGCAAAATGGA
*** * *
104000145 ATGCCTGCAAGAGCTTTATTTAGATGGGACGGGCATTAAAGAGCTACCTATTTCAATTGGAAATC
131 ATGCCTGCAAGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTATTTCAATCGAAAATC
104000210 T
196 T
104000211 GAGCAGTCTT
Statistics
Matches: 164, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
210 163 0.99
211 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (210 bp):
TTTTGAATTTAAAAGACTGCAAAAGTCTAAGGAGTTTTCCAACCAAAATTAGAATGGAATCCCTT
GAAAAGTTAACTCTTTCAGGTTGCTCAAAACTTAAAAGCTTTCCAGAAATTGATGGCAAAATGGA
ATGCCTGCAAGAGCTTTATTTAGATGGGACAAACATTAAAGAGCTACCTATTTCAATCGAAAATC
TCAGAAGACTTGAAG
Found at i:104000485 original size:25 final size:25
Alignment explanation
Indices: 104000451--104000501 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
104000441 TTCCTTATAA
**
104000451 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAAATTAGG
104000476 ACTTTAAATTAGGAATTAAATTAGG
1 ACTTTAAATTAGGAATTAAATTAGG
104000501 A
1 A
104000502 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAAATTAGG
Found at i:104000494 original size:12 final size:12
Alignment explanation
Indices: 104000454--104000501 Score: 60
Period size: 12 Copynumber: 3.9 Consensus size: 12
104000444 CTTATAAACT
104000454 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
104000466 TTCTATTAGGACT
1 TTAAATTAGGA-A
104000479 TTAAATTAGGAA
1 TTAAATTAGGAA
104000491 TTAAATTAGGA
1 TTAAATTAGGA
104000502 TTTTCCTTTG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
12 20 0.69
13 9 0.31
ACGTcount: A:0.42, C:0.04, G:0.17, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:104005138 original size:13 final size:13
Alignment explanation
Indices: 104005122--104005172 Score: 54
Period size: 12 Copynumber: 4.1 Consensus size: 13
104005112 TTCCTTATAA
104005122 AATTTAAATTAGG
1 AATTTAAATTAGG
104005135 AATTCT--ATTAGG
1 AATT-TAAATTAGG
*
104005147 ACTTTAAATTAGG
1 AATTTAAATTAGG
*
104005160 AA-TTAGATTAGG
1 AATTTAAATTAGG
104005172 A
1 A
104005173 TTTTCCTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
11 1 0.03
12 19 0.59
13 11 0.34
14 1 0.03
ACGTcount: A:0.41, C:0.04, G:0.18, T:0.37
Consensus pattern (13 bp):
AATTTAAATTAGG
Found at i:104005158 original size:25 final size:25
Alignment explanation
Indices: 104005124--104005172 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
104005114 CCTTATAAAA
**
104005124 TTTAAATTAGGAATTCTATTAGGAC
1 TTTAAATTAGGAATTAGATTAGGAC
104005149 TTTAAATTAGGAATTAGATTAGGA
1 TTTAAATTAGGAATTAGATTAGGA
104005173 TTTTCCTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.39, C:0.04, G:0.18, T:0.39
Consensus pattern (25 bp):
TTTAAATTAGGAATTAGATTAGGAC
Found at i:104009478 original size:84 final size:84
Alignment explanation
Indices: 104009337--104009502 Score: 289
Period size: 84 Copynumber: 2.0 Consensus size: 84
104009327 AAATCCAAAG
*
104009337 GAATTGCGTCACCTTCAAAGCATTTTGGAATCAAGCAACAAATTTGATCATTAAACAAAACTCCA
1 GAATTGCGTCACCTTCAAACCATTTTGGAATCAAGCAACAAATTTGATCATTAAACAAAACTCCA
104009402 TTGAGATTGACAAAAGCAA
66 TTGAGATTGACAAAAGCAA
* *
104009421 GAATTGGGTCACCTTCAAACCACTTTT-GAATCAAGCAACAAATTTGATCCTTAAACAAAACTCC
1 GAATTGCGTCACCTTCAAACCA-TTTTGGAATCAAGCAACAAATTTGATCATTAAACAAAACTCC
104009485 ATTGAGATTGACAAAAGC
65 ATTGAGATTGACAAAAGC
104009503 GAGCATGGAA
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
84 74 0.95
85 4 0.05
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.25
Consensus pattern (84 bp):
GAATTGCGTCACCTTCAAACCATTTTGGAATCAAGCAACAAATTTGATCATTAAACAAAACTCCA
TTGAGATTGACAAAAGCAA
Found at i:104010461 original size:18 final size:18
Alignment explanation
Indices: 104010438--104010479 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
104010428 AATGTACATC
*
104010438 TAATTATTTTTATTTCAT
1 TAATTATATTTATTTCAT
*
104010456 TAATTATATTTATTTTAT
1 TAATTATATTTATTTCAT
104010474 TAATTA
1 TAATTA
104010480 CTGTAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TAATTATATTTATTTCAT
Found at i:104013152 original size:49 final size:49
Alignment explanation
Indices: 104013080--104013261 Score: 274
Period size: 49 Copynumber: 3.7 Consensus size: 49
104013070 GCTATTGTGA
*
104013080 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
104013129 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
* * *
104013180 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
104013229 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
104013262 TGCATACAGA
Statistics
Matches: 119, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
49 75 0.63
51 44 0.37
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:104013255 original size:100 final size:99
Alignment explanation
Indices: 104013082--104013277 Score: 347
Period size: 100 Copynumber: 2.0 Consensus size: 99
104013072 TATTGTGAGG
104013082 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
104013147 AAGTGCAGGCTACTATGCGTACCTGATAACTTTGA
66 AAGTGCAGGCTACTATGCATA-CAGATAACTTTGA
* *
104013182 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
104013247 AAGTGCAGGCTACTATGCATACAGATAACTT
66 AAGTGCAGGCTACTATGCATACAGATAACTT
104013278 CGGCTACAAG
Statistics
Matches: 92, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
99 9 0.10
100 83 0.90
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCATACAGATAACTTTGA
Found at i:104015597 original size:203 final size:203
Alignment explanation
Indices: 104015248--104015660 Score: 754
Period size: 203 Copynumber: 2.0 Consensus size: 203
104015238 AATCAAGAGG
* *
104015248 ATTCCAATCGAAGTGAGTCAGAATGTGGGCAAGTGAGAGCTGTGACTTCTTGCCAGTGAGATGTA
1 ATTCCAATCGAAATGAGTCAGAATGTAGGCAAGTGAGAGCTGTGACTTCTTGCCAGTGAGATGTA
* *
104015313 CCAACGAGCGGGATGGTTCGAGTTAAGAGGCAAAAAAAATTGAGGCAAAAGTTCCAAAGGAAGGG
66 CCAACGAGCGGGATGGTTCGAGCTAAGAGGCAAAAAAAATCGAGGCAAAAGTTCCAAAGGAAGGG
104015378 ACAACCTGATATGAGACTAGTCTGGAAAAAACCAAAGCAATAAGAAAGATTCAAGGCAAATCAAG
131 ACAACCTGATATGAGACTAGTCTGGAAAAAACCAAAGCAATAAGAAAGATTCAAGGCAAATCAAG
104015443 TAAGTGTC
196 TAAGTGTC
* *
104015451 ATTCCAATCTAAATGAGTCAGAATGTAGGCAAGTGAGAGCTGTGACTTTTTGCCAGTGAGATGTA
1 ATTCCAATCGAAATGAGTCAGAATGTAGGCAAGTGAGAGCTGTGACTTCTTGCCAGTGAGATGTA
*
104015516 CCAACGAGTGGGATGGTTCGAGCTAAGAGGCAAAAAAAATCGAGGCAAAAGTTCCAAAGGAAGGG
66 CCAACGAGCGGGATGGTTCGAGCTAAGAGGCAAAAAAAATCGAGGCAAAAGTTCCAAAGGAAGGG
*
104015581 ACAACCTGATATGAGACTAGTCTGGAAAAAGCCAAAGCAATAAGAAAGATTCAAGGCAAATCAAG
131 ACAACCTGATATGAGACTAGTCTGGAAAAAACCAAAGCAATAAGAAAGATTCAAGGCAAATCAAG
104015646 TAAGTGTC
196 TAAGTGTC
104015654 ATTCCAA
1 ATTCCAA
104015661 ATGCGCAATA
Statistics
Matches: 202, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
203 202 1.00
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.20
Consensus pattern (203 bp):
ATTCCAATCGAAATGAGTCAGAATGTAGGCAAGTGAGAGCTGTGACTTCTTGCCAGTGAGATGTA
CCAACGAGCGGGATGGTTCGAGCTAAGAGGCAAAAAAAATCGAGGCAAAAGTTCCAAAGGAAGGG
ACAACCTGATATGAGACTAGTCTGGAAAAAACCAAAGCAATAAGAAAGATTCAAGGCAAATCAAG
TAAGTGTC
Found at i:104022517 original size:83 final size:83
Alignment explanation
Indices: 104022378--104022543 Score: 332
Period size: 83 Copynumber: 2.0 Consensus size: 83
104022368 CATCATGAAA
104022378 GACAACAACATGCATTAAAAGATGAAGAGAAGAGCAACCCTGTTACTAATGGCAATTTGCTTCTT
1 GACAACAACATGCATTAAAAGATGAAGAGAAGAGCAACCCTGTTACTAATGGCAATTTGCTTCTT
104022443 TTGCTGTGTGTAGTGTAG
66 TTGCTGTGTGTAGTGTAG
104022461 GACAACAACATGCATTAAAAGATGAAGAGAAGAGCAACCCTGTTACTAATGGCAATTTGCTTCTT
1 GACAACAACATGCATTAAAAGATGAAGAGAAGAGCAACCCTGTTACTAATGGCAATTTGCTTCTT
104022526 TTGCTGTGTGTAGTGTAG
66 TTGCTGTGTGTAGTGTAG
104022544 AGAAGAATAA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (83 bp):
GACAACAACATGCATTAAAAGATGAAGAGAAGAGCAACCCTGTTACTAATGGCAATTTGCTTCTT
TTGCTGTGTGTAGTGTAG
Done.