Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 320 of 352
Found at i:104024055 original size:26 final size:26
Alignment explanation
Indices: 104024026--104024090 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 26
104024016 ACCATTTCAC
*
104024026 TATTATGTTACTACTTATTTTATTGG
1 TATTATGTTACTACCTATTTTATTGG
* * * *
104024052 TATTGTATAACT-CCTATTTTATTGT
1 TATTATGTTACTACCTATTTTATTGG
*
104024077 TAATTTTGTTACTA
1 T-ATTATGTTACTA
104024091 TTTTAGAGGC
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
25 12 0.41
26 17 0.59
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.57
Consensus pattern (26 bp):
TATTATGTTACTACCTATTTTATTGG
Found at i:104029821 original size:17 final size:18
Alignment explanation
Indices: 104029801--104029834 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
104029791 ACTAAAGGGA
104029801 TAATC-TATAAATAAAAC
1 TAATCATATAAATAAAAC
*
104029818 TAATCATTTAAATAAAA
1 TAATCATATAAATAAAA
104029835 TTACGGGCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (18 bp):
TAATCATATAAATAAAAC
Found at i:104031888 original size:25 final size:26
Alignment explanation
Indices: 104031860--104031908 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
104031850 CTAAGGTAGG
*
104031860 TTGGGCTTAG-TTGGTTTAATTGGTA
1 TTGGGCTTAGTTTAGTTTAATTGGTA
*
104031885 TTGGGTTTAGTTTAGTTTAATTGG
1 TTGGGCTTAGTTTAGTTTAATTGG
104031909 GTTGAAGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.16, C:0.02, G:0.31, T:0.51
Consensus pattern (26 bp):
TTGGGCTTAGTTTAGTTTAATTGGTA
Found at i:104032371 original size:17 final size:17
Alignment explanation
Indices: 104032313--104032374 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
104032303 AATTCAATTT
*
104032313 ATATCAATATTTTAATA
1 ATATAAATATTTTAATA
*
104032330 ATA-AATATATATT-ATA
1 ATATAA-ATATTTTAATA
*
104032346 GTTTATAAATATTTTAATA
1 --ATATAAATATTTTAATA
104032365 ATATAAATAT
1 ATATAAATAT
104032375 AAGTATTTGT
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
16 4 0.11
17 18 0.51
18 8 0.23
19 5 0.14
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
ATATAAATATTTTAATA
Found at i:104032997 original size:2 final size:2
Alignment explanation
Indices: 104032985--104033027 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
104032975 AAAATTAAAT
*
104032985 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
104033027 T
1 T
104033028 GGAAAACTCG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:104034336 original size:18 final size:18
Alignment explanation
Indices: 104034313--104034347 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
104034303 ATTAAAATTT
104034313 AATTTT-ATTATTATATTA
1 AATTTTAATT-TTATATTA
104034331 AATTTTAATTTTATATT
1 AATTTTAATTTTATATT
104034348 TTTTTAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
AATTTTAATTTTATATTA
Found at i:104036440 original size:42 final size:41
Alignment explanation
Indices: 104036355--104036441 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 41
104036345 TAGTTCAATC
* *
104036355 ACTTGACACTATTAATTATATTGATTAAAATATTAACATAA
1 ACTTGACACTAATAATTATATTGATTAAAATATTAACAGAA
* * * *
104036396 ACTTTACACTAATAATTATTTTGGTTTTAAATATTAACAGAA
1 ACTTGACACTAATAATTATATT-GATTAAAATATTAACAGAA
104036438 ACTT
1 ACTT
104036442 CGAAAAAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 19 0.49
42 20 0.51
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.41
Consensus pattern (41 bp):
ACTTGACACTAATAATTATATTGATTAAAATATTAACAGAA
Found at i:104037160 original size:18 final size:18
Alignment explanation
Indices: 104037137--104037182 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
104037127 AATAATTTAT
104037137 TTTTAAAATCATA-AAAAA
1 TTTTAAAAT-ATATAAAAA
*
104037155 TTTTAAAATATATAATAA
1 TTTTAAAATATATAAAAA
*
104037173 TTATAAAATA
1 TTTTAAAATA
104037183 ATAGAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 3 0.12
18 22 0.88
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
TTTTAAAATATATAAAAA
Found at i:104041966 original size:43 final size:44
Alignment explanation
Indices: 104041905--104042002 Score: 146
Period size: 43 Copynumber: 2.3 Consensus size: 44
104041895 TCCTAATTGG
*
104041905 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCTCTTATTCTAATAAACTACTAAAACATAAAATA
* *
104041948 GAAAATAGTTCTCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCTCTTATTCTAATAAACTACTAAAACATAAAATA
*
104041992 -AAAATATTTCT
1 GAAAATAGTTCT
104042003 AGAATATGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 49 0.98
44 1 0.02
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (44 bp):
GAAAATAGTTCTCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:104042044 original size:19 final size:18
Alignment explanation
Indices: 104042022--104042058 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
104042012 ATAAAACTTT
104042022 TCTACCCAAATAAGATTTA
1 TCTACCCAAATAA-ATTTA
*
104042041 TCTACCTAAATAAATTTA
1 TCTACCCAAATAAATTTA
104042059 AAATATATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.35
Consensus pattern (18 bp):
TCTACCCAAATAAATTTA
Found at i:104046707 original size:43 final size:44
Alignment explanation
Indices: 104046646--104046743 Score: 130
Period size: 43 Copynumber: 2.3 Consensus size: 44
104046636 TCCTAATTGG
*
104046646 AAAAATAGTT-TCCTTATTCTAATAAACTACTCAAACATAAAA-
1 AAAAATAGTTCTCCTTATTCTAATAAACTACTAAAACATAAAAT
* *
104046688 AGAAAATAGTTCT-CTTATTCTAGTAAACTACTAAAAGATAAAAT
1 A-AAAATAGTTCTCCTTATTCTAATAAACTACTAAAACATAAAAT
*
104046732 AAAAATATTTCT
1 AAAAATAGTTCT
104046744 AGAATATGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.02
43 46 0.94
44 2 0.04
ACGTcount: A:0.49, C:0.13, G:0.05, T:0.33
Consensus pattern (44 bp):
AAAAATAGTTCTCCTTATTCTAATAAACTACTAAAACATAAAAT
Found at i:104046799 original size:18 final size:19
Alignment explanation
Indices: 104046752--104046792 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
104046742 CTAGAATATG
*
104046752 AATAAAACTTATCTACCCA
1 AATAAAATTTATCTACCCA
*
104046771 AATAAAATTTATCTACCTA
1 AATAAAATTTATCTACCCA
104046790 AAT
1 AAT
104046793 CAATTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.32
Consensus pattern (19 bp):
AATAAAATTTATCTACCCA
Found at i:104048488 original size:19 final size:19
Alignment explanation
Indices: 104048465--104048501 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
104048455 GTTTTTTATT
104048465 TTTTTTAAC-GAAAATGTG
1 TTTTTTAACTGAAAATGTG
*
104048483 TTTTTTAACTTAAAATGTG
1 TTTTTTAACTGAAAATGTG
104048502 AATATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.49
Consensus pattern (19 bp):
TTTTTTAACTGAAAATGTG
Found at i:104052391 original size:23 final size:23
Alignment explanation
Indices: 104052365--104052410 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
104052355 ATGTAACATA
104052365 GAAATTACTTTGTATATGTTTGT
1 GAAATTACTTTGTATATGTTTGT
104052388 GAAATTACTTTGTATATGTTTGT
1 GAAATTACTTTGTATATGTTTGT
104052411 AAGTATTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.04, G:0.17, T:0.52
Consensus pattern (23 bp):
GAAATTACTTTGTATATGTTTGT
Found at i:104055086 original size:26 final size:26
Alignment explanation
Indices: 104055046--104055112 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 26
104055036 CTTCCCTCCA
*
104055046 CCTAAATCC-TCAACAACAATGTCTTC
1 CCTAAATCCAT-AACAACAATATCTTC
104055072 CCTAAATCCAT---AACAATATCTTC
1 CCTAAATCCATAACAACAATATCTTC
*
104055095 CCTAAGTCCATAACAACA
1 CCTAAATCCATAACAACA
104055113 TCTCCTCTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
23 21 0.60
26 13 0.37
27 1 0.03
ACGTcount: A:0.39, C:0.33, G:0.03, T:0.25
Consensus pattern (26 bp):
CCTAAATCCATAACAACAATATCTTC
Found at i:104055093 original size:23 final size:23
Alignment explanation
Indices: 104055060--104055126 Score: 91
Period size: 23 Copynumber: 2.9 Consensus size: 23
104055050 AATCCTCAAC
*
104055060 AACAATGTCTTCCCTAAATCCAT
1 AACAATATCTTCCCTAAATCCAT
*
104055083 AACAATATCTTCCCTAAGTCCAT
1 AACAATATCTTCCCTAAATCCAT
*
104055106 AACAACATC-TCCTCTAAATCC
1 AACAATATCTTCC-CTAAATCC
104055127 TCAACAACCC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 3 0.08
23 36 0.92
ACGTcount: A:0.36, C:0.33, G:0.03, T:0.28
Consensus pattern (23 bp):
AACAATATCTTCCCTAAATCCAT
Found at i:104055132 original size:23 final size:23
Alignment explanation
Indices: 104055067--104055134 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
104055057 AACAACAATG
*
104055067 TCTTCCCTAAATCCATAACAATA
1 TCTTCCCTAAATCCATAACAACA
*
104055090 TCTTCCCTAAGTCCATAACAACA
1 TCTTCCCTAAATCCATAACAACA
104055113 TC-TCCTCTAAATCC-TCAACAAC
1 TCTTCC-CTAAATCCAT-AACAAC
104055135 CCTCTTACTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
22 4 0.10
23 36 0.90
ACGTcount: A:0.35, C:0.35, G:0.01, T:0.28
Consensus pattern (23 bp):
TCTTCCCTAAATCCATAACAACA
Found at i:104066744 original size:3 final size:3
Alignment explanation
Indices: 104066736--104066764 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
104066726 AGTGATCAAT
104066736 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
104066765 TGGGGAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:104071106 original size:24 final size:24
Alignment explanation
Indices: 104071073--104071120 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
104071063 ATATTTCAAA
*
104071073 GACTTTTGTGTCTGGAGGAATCAT
1 GACTTCTGTGTCTGGAGGAATCAT
104071097 GACTTCTGTGTCTGGAGGAATCAT
1 GACTTCTGTGTCTGGAGGAATCAT
104071121 TCACCCCGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.35
Consensus pattern (24 bp):
GACTTCTGTGTCTGGAGGAATCAT
Found at i:104075768 original size:51 final size:51
Alignment explanation
Indices: 104075704--104075801 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
104075694 TCATCCGTAA
* *
104075704 CACATCTAGTTAGGATCATTTGATTCATTTCGATCACAGCATCCTAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCACAGCATCCTAAGCAT
* *
104075755 CACATTTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAA
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCACAGCATCCTAA
104075802 TTATTTGGCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (51 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCAATCACAGCATCCTAAGCAT
Found at i:104075947 original size:44 final size:43
Alignment explanation
Indices: 104075898--104076227 Score: 226
Period size: 43 Copynumber: 7.6 Consensus size: 43
104075888 AGCCTTATCT
* *
104075898 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCC
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTGACAGACCTTAA-CC
* * * * ** *
104075942 CCCTAAGAAGTAGGG-AAAAAGATCGAA--GACGAAGGGTCTTAAAC
1 CCCTAAGCAGTAGGGTAACAGGCT-GAATTGAC--A-GACCTTAACC
* * *
104075986 CCCTAAGCAGTAGGGTAACAGACTGAATTG-CAAACCTTAACT
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTGACAGACCTTAACC
* * * * ** * *
104076028 CCCTAAGCAGTAGGGAAACA-GATCAAAGGTGATGGGCTTTAA-C
1 CCCTAAGCAGTAGGGTAACAGGCT-GAA-TTGACAGACCTTAACC
** * * *
104076071 CCCTAAGCAGTAGGGTAGTAAGCTGAATTTACAGACCTTAAAC
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTGACAGACCTTAACC
* * *
104076114 CCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTAACC
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTGACAGACCTTAACC
* * * *
104076157 CCCTAAGCAGTAGGGAAACA-GATCAAAGGTGACA-AGCCTTAACC
1 CCCTAAGCAGTAGGGTAACAGGCT-GAA-TTGACAGA-CCTTAACC
104076201 CCCTAAGCAGTAGGGTAACAGGCTGAA
1 CCCTAAGCAGTAGGGTAACAGGCTGAA
104076228 GATTTGTAGA
Statistics
Matches: 215, Mismatches: 55, Indels: 32
0.71 0.18 0.11
Matches are distributed among these distances:
41 1 0.00
42 38 0.18
43 86 0.40
44 75 0.35
45 14 0.07
46 1 0.00
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGCTGAATTGACAGACCTTAACC
Found at i:104076109 original size:86 final size:84
Alignment explanation
Indices: 104075898--104076134 Score: 271
Period size: 86 Copynumber: 2.7 Consensus size: 84
104075888 AGCCTTATCT
* * *
104075898 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCCTAAGAAGTAGGGAAAAAG
1 CCCTAAGCAGTAGGGTAA-A-GCTGAATTTACAGACCTTAA--CCCCTAAGCAGTAGGGAAACAG
*
104075963 ATCGAAGACGAAGGGTCTTAAAC
62 ATCAAAGACGAAGGGTCTTAAAC
* *
104075986 CCCTAAGCAGTAGGGTAACAGACTGAA-TTGCAAACCTTAACTCCCTAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAA-AG-CTGAATTTACAGACCTTAAC-CCCTAAGCAGTAGGGAAACAGA
** * *
104076050 TCAAAGGTGATGGG-CTTTAAC
63 TCAAAGACGAAGGGTCTTAAAC
*
104076071 CCCTAAGCAGTAGGGTAGTAAGCTGAATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGTA--AAGCTGAATTTACAGACCTT-AACCCCTAAGCAGTAGGGAAACAG
104076135 GTTGAATTCA
Statistics
Matches: 130, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
85 29 0.22
86 61 0.47
87 15 0.12
88 25 0.19
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (84 bp):
CCCTAAGCAGTAGGGTAAAGCTGAATTTACAGACCTTAACCCCTAAGCAGTAGGGAAACAGATCA
AAGACGAAGGGTCTTAAAC
Found at i:104076169 original size:129 final size:129
Alignment explanation
Indices: 104075979--104076217 Score: 374
Period size: 129 Copynumber: 1.9 Consensus size: 129
104075969 GACGAAGGGT
*
104075979 CTTAAACCCCTAAGCAGTAGGGTAACAGACTGAATTGCAAACCTTAACTCCCTAAGCAGTAGGGA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACTGAATTGCAAACCTTAACCCCCTAAGCAGTAGGGA
*** *
104076044 AACAGATCAAAGGTGATGGGCTTTAA-CCCCTAAGCAGTAGGGTAGTAAGCTGAATTTACAGAC
66 AACAGATCAAAGGTGACAAGCCTTAACCCCCTAAGCAGTAGGGTAGTAAGCTGAATTTACAGAC
** *
104076107 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATT-CACAGATCTTAACCCCCTAAGCAGTAGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACTGAATTGCA-A-ACCTTAACCCCCTAAGCAGTAGG
104076171 GAAACAGATCAAAGGTGACAAGCCTTAACCCCCTAAGCAGTAGGGTA
64 GAAACAGATCAAAGGTGACAAGCCTTAACCCCCTAAGCAGTAGGGTA
104076218 ACAGGCTGAA
Statistics
Matches: 100, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
127 2 0.02
128 35 0.35
129 45 0.45
130 18 0.18
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (129 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGACTGAATTGCAAACCTTAACCCCCTAAGCAGTAGGGA
AACAGATCAAAGGTGACAAGCCTTAACCCCCTAAGCAGTAGGGTAGTAAGCTGAATTTACAGAC
Found at i:104076220 original size:87 final size:89
Alignment explanation
Indices: 104076106--104076273 Score: 250
Period size: 89 Copynumber: 1.9 Consensus size: 89
104076096 AATTTACAGA
* * *
104076106 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTG-A-ATTCACAGATCTTAACCCCCTAAGCAGTA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTCACAGATCTCAACACCCTAAGCAGTA
104076169 GGGAAACAGATCAAAGGTGACAAG
66 GGGAAACAGATCAAAGGTGACAAG
* *** *
104076193 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTGTAGATCTCATCACCCTAAGCAGTA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTCACAGATCTCAACACCCTAAGCAGTA
104076258 GGGAAACAGATCAAAG
66 GGGAAACAGATCAAAG
104076274 CTATGAATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
87 31 0.44
88 1 0.01
89 39 0.55
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (89 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTCACAGATCTCAACACCCTAAGCAGTA
GGGAAACAGATCAAAGGTGACAAG
Found at i:104078459 original size:18 final size:18
Alignment explanation
Indices: 104078436--104078478 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
104078426 AAATATTGTA
* * *
104078436 TTTTTATTATGTATATAT
1 TTTTTATTACGGATACAT
*
104078454 TTTTTAATACGGATACAT
1 TTTTTATTACGGATACAT
104078472 TTTTTAT
1 TTTTTAT
104078479 ATATTACGTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (18 bp):
TTTTTATTACGGATACAT
Found at i:104078670 original size:19 final size:21
Alignment explanation
Indices: 104078646--104078688 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 21
104078636 TTATTAATAG
*
104078646 TTATTTTTTAATAT-TATG-A
1 TTATTTTCTAATATGTATGTA
104078665 TTA-TTTCTAATATGTATGTA
1 TTATTTTCTAATATGTATGTA
104078685 TTAT
1 TTAT
104078689 GTATTTACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
18 9 0.45
19 7 0.35
20 4 0.20
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.60
Consensus pattern (21 bp):
TTATTTTCTAATATGTATGTA
Found at i:104078758 original size:3 final size:3
Alignment explanation
Indices: 104078710--104078739 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
104078700 TAATACTATA
104078710 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
104078740 CAATATTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:104083450 original size:12 final size:12
Alignment explanation
Indices: 104083433--104083480 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
104083423 TGGGAGTAAA
104083433 GTTTTATATTTG
1 GTTTTATATTTG
*
104083445 GTTTTATATGTTAAA
1 GTTTTATAT-TT--G
*
104083460 GTTTTATGTTTG
1 GTTTTATATTTG
104083472 GTTTTATAT
1 GTTTTATAT
104083481 GTTAATGACA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
12 17 0.59
13 2 0.07
14 2 0.07
15 8 0.28
ACGTcount: A:0.21, C:0.00, G:0.17, T:0.62
Consensus pattern (12 bp):
GTTTTATATTTG
Found at i:104083463 original size:27 final size:27
Alignment explanation
Indices: 104083429--104083485 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
104083419 TTAGTGGGAG
104083429 TAAAGTTTTATATTTGGTTTTATATGT
1 TAAAGTTTTATATTTGGTTTTATATGT
*
104083456 TAAAGTTTTATGTTTGGTTTTATATGT
1 TAAAGTTTTATATTTGGTTTTATATGT
104083483 TAA
1 TAA
104083486 TGACATACTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (27 bp):
TAAAGTTTTATATTTGGTTTTATATGT
Found at i:104086301 original size:25 final size:26
Alignment explanation
Indices: 104086264--104086315 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
104086254 TCAAACATGC
104086264 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
104086290 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
104086315 A
1 A
104086316 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:104087779 original size:26 final size:26
Alignment explanation
Indices: 104087748--104087829 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
104087738 TGAAATTCCC
*
104087748 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
104087774 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
104087800 ATCATGGAACATTTACCTAACCCCTT
1 ATCATGGAACATTTACCTAACCCATT
104087826 ATCA
1 ATCA
104087830 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:104088324 original size:3 final size:3
Alignment explanation
Indices: 104088304--104088357 Score: 72
Period size: 3 Copynumber: 18.0 Consensus size: 3
104088294 ACATTACGTA
* * * *
104088304 TAT TAA TAT TAA TAT TAT TAT TAT TAT TCT TAT CAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
104088352 TAT TAT
1 TAT TAT
104088358 CATGTGTTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:104088500 original size:21 final size:21
Alignment explanation
Indices: 104088449--104088502 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
104088439 AATATGTATA
*
104088449 TATTATGTATATTTCTAATAC
1 TATTTTGTATATTTCTAATAC
* * *
104088470 TATATGGTATATTTCTAATAT
1 TATTTTGTATATTTCTAATAC
104088491 TATTTTGTATAT
1 TATTTTGTATAT
104088503 ATATATGTAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.06, G:0.07, T:0.56
Consensus pattern (21 bp):
TATTTTGTATATTTCTAATAC
Found at i:104090115 original size:3 final size:3
Alignment explanation
Indices: 104090107--104090144 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
104090097 TGTTATAATT
* *
104090107 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
104090145 GTTTATTAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:104090472 original size:13 final size:15
Alignment explanation
Indices: 104090440--104090486 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
104090430 ATTATCTCTA
104090440 ATATATGTATATATT
1 ATATATGTATATATT
*
104090455 ATATATGTTTATATT
1 ATATATGTATATATT
*
104090470 ATATATATATATATT
1 ATATATGTATATATT
104090485 AT
1 AT
104090487 TTCTTTACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.55
Consensus pattern (15 bp):
ATATATGTATATATT
Found at i:104090493 original size:28 final size:31
Alignment explanation
Indices: 104090440--104090498 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
104090430 ATTATCTCTA
* *
104090440 ATATATGTATATATTATATATGTTTA-TATT
1 ATATATATATATATTATATATCTTTACTATT
104090470 ATATATATATATATTAT-T-TCTTTACTATT
1 ATATATATATATATTATATATCTTTACTATT
104090499 CCATGTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 5 0.19
29 5 0.19
30 16 0.62
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (31 bp):
ATATATATATATATTATATATCTTTACTATT
Found at i:104092027 original size:28 final size:27
Alignment explanation
Indices: 104091970--104092042 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 27
104091960 TTACATTATG
* *
104091970 TATGTATTTCTCAT-ATTATTAGTTGTA
1 TATGTATTT-TTATGATTATTAGTTGCA
104091997 TATGTATTTTTATGATGTATTAGTTGCA
1 TATGTATTTTTATGAT-TATTAGTTGCA
*
104092025 TATATATTTTTATG-TTAT
1 TATGTATTTTTATGATTAT
104092043 CTTATGTACA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.15
27 12 0.29
28 23 0.56
ACGTcount: A:0.26, C:0.04, G:0.12, T:0.58
Consensus pattern (27 bp):
TATGTATTTTTATGATTATTAGTTGCA
Found at i:104095760 original size:4 final size:4
Alignment explanation
Indices: 104095753--104095788 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
104095743 GACATTTATG
*
104095753 CATT CATT CATA CATT CATT CATT CATT CATT CATT
1 CATT CATT CATT CATT CATT CATT CATT CATT CATT
104095789 GCATATCCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (4 bp):
CATT
Found at i:104099411 original size:32 final size:32
Alignment explanation
Indices: 104099375--104099436 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
104099365 CTGACGCAAG
*
104099375 TAAAGATGTCTCAAGGATACGCCCTTGTCCCC
1 TAAAGATGTCTCAAGGATACGCCATTGTCCCC
104099407 TAAAGATGTCTCAAGGATACGCCATTGTCC
1 TAAAGATGTCTCAAGGATACGCCATTGTCC
104099437 TCCGGGTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (32 bp):
TAAAGATGTCTCAAGGATACGCCATTGTCCCC
Found at i:104101950 original size:26 final size:26
Alignment explanation
Indices: 104101913--104101996 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
104101903 TGATACAAAT
* *
104101913 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
104101939 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
104101965 TGATGATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
104101991 TGATAA
1 TGATAA
104101997 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:104103650 original size:27 final size:27
Alignment explanation
Indices: 104103620--104103744 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
104103610 AGCGTCCTGA
104103620 TGGCTATGCCACA-ATTATCTGATCTGG
1 TGGCTATGCCACATA-TATCTGATCTGG
* *
104103647 TGGCTTTGCCACATATATCTGTTCTGG
1 TGGCTATGCCACATATATCTGATCTGG
104103674 TGGCTATGCCACGAT-TATCTGATCTGG
1 TGGCTATGCCAC-ATATATCTGATCTGG
* *
104103701 TGGCTCTGCCACATATATCTGTTCTGG
1 TGGCTATGCCACATATATCTGATCTGG
*
104103728 TGGCTCTGCCACA-ATAT
1 TGGCTATGCCACATATAT
104103745 TTGTATTTGG
Statistics
Matches: 89, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
26 6 0.07
27 80 0.90
28 3 0.03
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
TGGCTATGCCACATATATCTGATCTGG
Found at i:104103702 original size:54 final size:54
Alignment explanation
Indices: 104103620--104103742 Score: 219
Period size: 54 Copynumber: 2.3 Consensus size: 54
104103610 AGCGTCCTGA
*
104103620 TGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTTCTGG
1 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
*
104103674 TGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
1 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
*
104103728 TGGCTCTGCCACAAT
1 TGGCTATGCCACAAT
104103743 ATTTGTATTT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGG
Found at i:104103755 original size:27 final size:27
Alignment explanation
Indices: 104103620--104103774 Score: 158
Period size: 27 Copynumber: 5.7 Consensus size: 27
104103610 AGCGTCCTGA
104103620 TGGCTATGCCACAATTATCTG-ATCTGG
1 TGGCTATGCCACAA-TATCTGTATCTGG
*
104103647 TGGCTTTGCCACATATATCTGT-TCTGG
1 TGGCTATGCCACA-ATATCTGTATCTGG
*
104103674 TGGCTATGCCACGATTATCTG-ATCTGG
1 TGGCTATGCCAC-AATATCTGTATCTGG
*
104103701 TGGCTCTGCCACATATATCTGT-TCTGG
1 TGGCTATGCCACA-ATATCTGTATCTGG
* * *
104103728 TGGCTCTGCCACAATATTTGTATTTGG
1 TGGCTATGCCACAATATCTGTATCTGG
* *
104103755 TGACT-TCGTCACAATATCTG
1 TGGCTAT-GCCACAATATCTG
104103775 GCAGCCTCGC
Statistics
Matches: 110, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
26 9 0.08
27 99 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
TGGCTATGCCACAATATCTGTATCTGG
Found at i:104106390 original size:29 final size:30
Alignment explanation
Indices: 104106331--104106388 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
104106321 TCCGAGCCTT
*
104106331 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
104106361 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
104106389 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:104106618 original size:13 final size:13
Alignment explanation
Indices: 104106600--104106631 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
104106590 TTTCCAGCAA
104106600 TTATGAATTTATT
1 TTATGAATTTATT
104106613 TTATGAATTTATT
1 TTATGAATTTATT
*
104106626 TGATGA
1 TTATGA
104106632 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:104106839 original size:50 final size:50
Alignment explanation
Indices: 104106726--104106967 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
104106716 ATTTGGGTAA
* * *
104106726 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
104106782 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
104106832 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
104106882 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
104106932 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
104106968 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:104106915 original size:100 final size:103
Alignment explanation
Indices: 104106726--104106975 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
104106716 ATTTGGGTAA
104106726 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
104106791 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
104106832 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
104106894 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
104106932 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
104106976 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:104110570 original size:26 final size:26
Alignment explanation
Indices: 104110533--104110616 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
104110523 TGATACAAAT
* *
104110533 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
104110559 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
104110585 TGATGATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
104110611 TGATAA
1 TGATAA
104110617 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:104112322 original size:54 final size:53
Alignment explanation
Indices: 104112240--104112394 Score: 213
Period size: 54 Copynumber: 2.9 Consensus size: 53
104112230 AGCGTCCTGA
104112240 TGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTTCTGG
1 TGGCTATGCCAC-ATTATCTGATCTGGTGGCTTTGCCACATATATCTGTTCTGG
* *
104112294 TGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTTTGG
1 TGGCTATGCCAC-ATTATCTGATCTGGTGGCTTTGCCACATATATCTGTTCTGG
* * * * *
104112348 TGGCTCTGCCACAATATCTGTATCTGGTGACTTCGTCACA-ATATCTG
1 TGGCTATGCCACATTATCTG-ATCTGGTGGCTTTGCCACATATATCTG
104112395 GCAGCCTCGC
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 14 0.15
54 77 0.85
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (53 bp):
TGGCTATGCCACATTATCTGATCTGGTGGCTTTGCCACATATATCTGTTCTGG
Found at i:104112372 original size:32 final size:27
Alignment explanation
Indices: 104112240--104112376 Score: 172
Period size: 27 Copynumber: 5.1 Consensus size: 27
104112230 AGCGTCCTGA
*
104112240 TGGCTATGCCACA-ATTATCTGATCTGG
1 TGGCTCTGCCACATA-TATCTGATCTGG
* *
104112267 TGGCTTTGCCACATATATCTGTTCTGG
1 TGGCTCTGCCACATATATCTGATCTGG
*
104112294 TGGCTATGCCACGAT-TATCTGATCTGG
1 TGGCTCTGCCAC-ATATATCTGATCTGG
* *
104112321 TGGCTCTGCCACATATATCTGTTTTGG
1 TGGCTCTGCCACATATATCTGATCTGG
104112348 TGGCTCTGCCACA-ATATCTGTATCTGG
1 TGGCTCTGCCACATATATCTG-ATCTGG
104112375 TG
1 TG
104112377 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 9 0.09
27 85 0.88
28 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
TGGCTCTGCCACATATATCTGATCTGG
Found at i:104112387 original size:27 final size:27
Alignment explanation
Indices: 104112247--104112394 Score: 139
Period size: 27 Copynumber: 5.5 Consensus size: 27
104112237 TGATGGCTAT
*
104112247 GCCACAATTATCTG-ATCTGGTGGCTTT
1 GCCACAA-TATCTGTATCTGGTGGCTTC
104112274 GCCACATATATCTGT-TCTGGTGGCTAT-
1 GCCACA-ATATCTGTATCTGGTGGCT-TC
*
104112301 GCCACGATTATCTG-ATCTGGTGGC-TC
1 GCCAC-AATATCTGTATCTGGTGGCTTC
*
104112327 TGCCACATATATCTGT-TTTGGTGGC-TC
1 -GCCACA-ATATCTGTATCTGGTGGCTTC
*
104112354 TGCCACAATATCTGTATCTGGTGACTTC
1 -GCCACAATATCTGTATCTGGTGGCTTC
*
104112382 GTCACAATATCTG
1 GCCACAATATCTG
104112395 GCAGCCTCGC
Statistics
Matches: 104, Mismatches: 6, Indels: 22
0.79 0.05 0.17
Matches are distributed among these distances:
25 1 0.01
26 9 0.09
27 89 0.86
28 5 0.05
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GCCACAATATCTGTATCTGGTGGCTTC
Found at i:104115921 original size:70 final size:70
Alignment explanation
Indices: 104115835--104115974 Score: 246
Period size: 70 Copynumber: 2.0 Consensus size: 70
104115825 ACGCTGAGGT
104115835 ATTTTCAATTCTCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 ATTTTCAATTCTCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
104115900 GAGCC
66 GAGCC
* *
104115905 ATTTTCAATT-TCCGTTTTTCAATTTATGTTTCAAAAAAATTAACTCATATTGCGATAGGTGAGT
1 ATTTTCAATTCT-CGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
104115969 TGAGCC
65 TGAGCC
104115975 TCAGGACACG
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
69 1 0.01
70 66 0.99
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (70 bp):
ATTTTCAATTCTCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCC
Found at i:104116008 original size:87 final size:87
Alignment explanation
Indices: 104115905--104116450 Score: 880
Period size: 87 Copynumber: 6.3 Consensus size: 87
104115895 GAGTTGAGCC
* *
104115905 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATTAACTCATATTGCGATAGGTGAGTT
1 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
104115970 GAGCCTCAGGACACGCTGAGGT
66 GAGCCTCAGGACACGCTGAGGT
104115992 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
104116057 GAGCCTCAGGTCATGCTGAGGT
66 GAGCCTCAGGACACGCTGAGGT
* * * * * * *
104116079 ATTTTCAATTTCTGTTTTTCAATTTCTATCTAAAAAAAATGAACTCATATTGCAAGAGGTGAGTT
1 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
104116144 GAGCCTCAGGTCATGCTGAGGT
66 GAGCCTCAGGACACGCTGAGGT
* *
104116166 ATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAG
1 ATTTTCAATTTCCGTTTTTCAATTTATG--TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
104116230 TTGAGCCTCAGGACACGCTGAGGT
64 TTGAGCCTCAGGACACGCTGAGGT
104116254 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
104116319 GAGTCTCAGGACACGCTGAGGT
66 GAGCCTCAGGACACGCTGAGGT
104116341 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
1 ATTTTCAATTTCCGTTTTTCAATTTATGTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGT
*
104116406 TGAGCCTCA-GATCATGCTGAGGT
65 TGAGCCTCAGGA-CACGCTGAGGT
*
104116429 ATTTTCAATTTCCGTCTTTCAA
1 ATTTTCAATTTCCGTTTTTCAA
104116451 AAAATTAACT
Statistics
Matches: 430, Mismatches: 24, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
86 4 0.01
87 277 0.64
88 147 0.34
89 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (87 bp):
ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCAGGACACGCTGAGGT
Found at i:104116186 original size:14 final size:14
Alignment explanation
Indices: 104116167--104116201 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
104116157 TGCTGAGGTA
104116167 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
104116181 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
*
104116195 CTTTCAA
1 TTTTCAA
104116202 AAAATCAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:104116277 original size:175 final size:174
Alignment explanation
Indices: 104115905--104116450 Score: 889
Period size: 175 Copynumber: 3.1 Consensus size: 174
104115895 GAGTTGAGCC
* *
104115905 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATTAACTCATATTGCGATAGGTGAGTT
1 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
104115970 GAGCCTCAGGACACGCTGAGGTATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAA
66 GAGCCTCAGGACACGCTGAGGTATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAA
*
104116035 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGT
131 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGT
* * * * * * *
104116079 ATTTTCAATTTCTGTTTTTCAATTTCTATCTAAAAAAAATGAACTCATATTGCAAGAGGTGAGTT
1 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * *
104116144 GAGCCTCAGGTCATGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTTC-AAAAAATC
66 GAGCCTCAGGACACGCTGAGGTATTTTCAATTTCCGTTTTTCAATTTATG--TTTCAAAAAAATC
*
104116208 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
129 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGT
104116254 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
104116319 GAGTCTCAGGACACGCTGAGGTATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAAATCA
66 GAGCCTCAGGACACGCTGAGGTATTTTCAATTTCCGTTTTTCAATTTATGTTTC-AAAAAAATCA
104116384 ACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GATCATGCTGAGGT
130 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CATGCTGAGGT
*
104116429 ATTTTCAATTTCCGTCTTTCAA
1 ATTTTCAATTTCCGTTTTTCAA
104116451 AAAATTAACT
Statistics
Matches: 339, Mismatches: 28, Indels: 9
0.90 0.07 0.02
Matches are distributed among these distances:
173 4 0.01
174 105 0.31
175 226 0.67
176 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (174 bp):
ATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCAGGACACGCTGAGGTATTTTCAATTTCCGTTTTTCAATTTATGTTTCAAAAAAATCAA
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGT
Found at i:104116649 original size:54 final size:55
Alignment explanation
Indices: 104116430--104116650 Score: 347
Period size: 54 Copynumber: 4.0 Consensus size: 55
104116420 TGCTGAGGTA
* * * *
104116430 TTTTCAATTTCCGTCTTTCAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCT
1 TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
104116486 TTTTAATTTCTGTTTTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGAC
1 TTTTAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
104116542 TTTTAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
104116596 TTTTAATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
104116650 T
1 T
104116651 CGGGTCACAT
Statistics
Matches: 155, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
54 88 0.57
55 12 0.08
56 55 0.35
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (55 bp):
TTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
Found at i:104118542 original size:3 final size:3
Alignment explanation
Indices: 104118528--104118572 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
104118518 TCATTACGTA
* * *
104118528 TAT TAA TAT TAT TAT TAT TAT TCT TAT CAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
104118573 CATGTGTTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:104118712 original size:21 final size:21
Alignment explanation
Indices: 104118661--104118714 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
104118651 AATATGTATA
*
104118661 TATTATGTATATTTCTAATAC
1 TATTTTGTATATTTCTAATAC
* * *
104118682 TATATGGTATATTTCTAATAT
1 TATTTTGTATATTTCTAATAC
104118703 TATTTTGTATAT
1 TATTTTGTATAT
104118715 ATATATGTAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.06, G:0.07, T:0.56
Consensus pattern (21 bp):
TATTTTGTATATTTCTAATAC
Found at i:104119046 original size:23 final size:22
Alignment explanation
Indices: 104119006--104119048 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
104118996 TATGTATCTT
104119006 TTTTTTATTATCATTACGTACA
1 TTTTTTATTATCATTACGTACA
104119028 TTTTTTATATAT-ATATACGTA
1 TTTTTTAT-TATCAT-TACGTA
104119049 TATGTGTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.56
Consensus pattern (22 bp):
TTTTTTATTATCATTACGTACA
Found at i:104119388 original size:28 final size:27
Alignment explanation
Indices: 104119331--104119434 Score: 70
Period size: 28 Copynumber: 3.8 Consensus size: 27
104119321 TTACATTATG
* *
104119331 TATGTATTTCTCAT-ATTATTAATTGTA
1 TATGTATTT-TTATGATTATTAATTGCA
*
104119358 TATGTATTTTTATGATGTATTAGTTGCA
1 TATGTATTTTTATGAT-TATTAATTGCA
* * * *
104119386 TATATTTTTTTATG-TTATCTTATGTACA
1 TATGTATTTTTATGATTAT-TAAT-TGCA
*
104119414 TAT-TATTTTATATTATTATTA
1 TATGTATTTT-TATGATTATTA
104119435 CTAAGTATAT
Statistics
Matches: 60, Mismatches: 11, Indels: 11
0.73 0.13 0.13
Matches are distributed among these distances:
26 6 0.10
27 19 0.32
28 31 0.52
29 4 0.07
ACGTcount: A:0.28, C:0.05, G:0.09, T:0.59
Consensus pattern (27 bp):
TATGTATTTTTATGATTATTAATTGCA
Found at i:104120227 original size:32 final size:32
Alignment explanation
Indices: 104120191--104120255 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
104120181 TGTATGCATT
104120191 TTAGCATTTTAATAGTTAATGAATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
*
104120223 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGAATGATGGGCA
104120255 T
1 T
104120256 GATAAGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGAATGATGGGCA
Found at i:104123409 original size:12 final size:12
Alignment explanation
Indices: 104123392--104123422 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
104123382 ACTCGGGGAA
104123392 GAGGCCGTGGTC
1 GAGGCCGTGGTC
104123404 GAGGCCGTGGTC
1 GAGGCCGTGGTC
104123416 GAGGCCG
1 GAGGCCG
104123423 AGGTAGTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:104130984 original size:31 final size:32
Alignment explanation
Indices: 104130948--104131011 Score: 121
Period size: 31 Copynumber: 2.0 Consensus size: 32
104130938 TGTATGCATT
104130948 TTAGCATTTTAATAGTTAAT-GATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
104130979 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
104131011 T
1 T
104131012 GATAAGCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 20 0.62
32 12 0.38
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.39
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:104132518 original size:26 final size:26
Alignment explanation
Indices: 104132489--104132541 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
104132479 TTTACAGTTT
104132489 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
104132515 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
104132541 T
1 T
104132542 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:104135580 original size:29 final size:30
Alignment explanation
Indices: 104135548--104135608 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
104135538 ATAATTCAAA
*
104135548 TAATTTGATTCG-ATTAACTCGAATTTT-TT
1 TAATTT-ATTCGAATTAAATCGAATTTTGTT
* *
104135577 TAATTTTTTTGAATTAAATCGAATTTTGTT
1 TAATTTATTCGAATTAAATCGAATTTTGTT
104135607 TA
1 TA
104135609 CCCCTAACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 3 0.11
29 20 0.74
30 4 0.15
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.54
Consensus pattern (30 bp):
TAATTTATTCGAATTAAATCGAATTTTGTT
Found at i:104136033 original size:19 final size:18
Alignment explanation
Indices: 104136009--104136046 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
104135999 AATTATCAAG
* *
104136009 TTTTTAAAAATTAGGTTT
1 TTTTTTAAAATTAAGTTT
104136027 TTTTTTAAAATTAAGTTT
1 TTTTTTAAAATTAAGTTT
104136045 TT
1 TT
104136047 AAAATTATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (18 bp):
TTTTTTAAAATTAAGTTT
Found at i:104140184 original size:26 final size:26
Alignment explanation
Indices: 104140153--104140234 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
104140143 TGAAATACCC
*
104140153 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
104140179 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
104140205 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
104140231 ATCA
1 ATCA
104140235 ATTTGTACCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.37, C:0.26, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:104142484 original size:23 final size:20
Alignment explanation
Indices: 104142458--104142498 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
104142448 TTTTTAATAA
104142458 ATTTCTATTTTGTATAATTTTTT
1 ATTTC-ATTTT-TAT-ATTTTTT
104142481 ATTTCATTTTTATATTTT
1 ATTTCATTTTTATATTTT
104142499 AACTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 3 0.17
22 5 0.28
23 5 0.28
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (20 bp):
ATTTCATTTTTATATTTTTT
Found at i:104144457 original size:26 final size:26
Alignment explanation
Indices: 104144420--104144503 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
104144410 TGATACAAAT
*
104144420 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
104144446 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
104144472 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
104144498 TGATAA
1 TGATAA
104144504 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:104149990 original size:10 final size:10
Alignment explanation
Indices: 104149975--104150000 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
104149965 AGAACCCGAC
104149975 AATTTTAGTT
1 AATTTTAGTT
104149985 AATTTTAGTT
1 AATTTTAGTT
104149995 AATTTT
1 AATTTT
104150001 TGTTCCATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (10 bp):
AATTTTAGTT
Found at i:104150256 original size:26 final size:26
Alignment explanation
Indices: 104150219--104150276 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
104150209 TGATACAAAT
104150219 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
104150245 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
104150271 TGATAA
1 TGATAA
104150277 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:104155242 original size:16 final size:16
Alignment explanation
Indices: 104155221--104155251 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
104155211 CAAAAAGCCT
104155221 CCATTGCTCTAGCTTC
1 CCATTGCTCTAGCTTC
*
104155237 CCATTGCTTTAGCTT
1 CCATTGCTCTAGCTT
104155252 TCCAGCTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.32, G:0.13, T:0.42
Consensus pattern (16 bp):
CCATTGCTCTAGCTTC
Found at i:104155952 original size:3 final size:3
Alignment explanation
Indices: 104155944--104155976 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
104155934 TAACTTCCTT
104155944 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
104155977 ATTTTTTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:104156846 original size:13 final size:13
Alignment explanation
Indices: 104156828--104156858 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
104156818 ATATAATTTT
104156828 TAAAATTTTAAAA
1 TAAAATTTTAAAA
*
104156841 TAAAATTTTAACA
1 TAAAATTTTAAAA
104156854 TAAAA
1 TAAAA
104156859 CTTGAAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (13 bp):
TAAAATTTTAAAA
Found at i:104157298 original size:18 final size:16
Alignment explanation
Indices: 104157268--104157303 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
104157258 AAAAAAATTG
104157268 ATAAAAATAAAAATAA
1 ATAAAAATAAAAATAA
104157284 ATAAAAATTAGAAAATAA
1 ATAAAAA-TA-AAAATAA
104157302 AT
1 AT
104157304 TATAAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 2 0.11
18 9 0.50
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (16 bp):
ATAAAAATAAAAATAA
Found at i:104157357 original size:19 final size:20
Alignment explanation
Indices: 104157329--104157378 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
104157319 AGTCGTAAGG
104157329 AAAT-TATAAAAAAT-ATAA
1 AAATATATAAAAAATCATAA
*
104157347 AAATATAT-AAAATTCATAA
1 AAATATATAAAAAATCATAA
*
104157366 AAAAATATAAAAA
1 AAATATATAAAAA
104157379 TACCATACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 9 0.33
19 14 0.52
20 4 0.15
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATATATAAAAAATCATAA
Found at i:104157385 original size:21 final size:21
Alignment explanation
Indices: 104157345--104157385 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
104157335 TAAAAAATAT
*
104157345 AAAAATATATAAAATTCATAA
1 AAAAATATATAAAATCCATAA
104157366 AAAAATATA-AAAATACCATA
1 AAAAATATATAAAAT-CCATA
104157386 CTAAAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAAATATATAAAATCCATAA
Found at i:104158432 original size:20 final size:20
Alignment explanation
Indices: 104158407--104158456 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
104158397 TGGCTTAAAA
104158407 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
104158427 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
104158444 GTGGTAGTGGATT
1 TTGGTAGTGGATT
104158457 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:104163061 original size:20 final size:20
Alignment explanation
Indices: 104163036--104163085 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
104163026 TGGCTTAAAA
104163036 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
104163056 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
104163073 GTGGTAGTGGATT
1 TTGGTAGTGGATT
104163086 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:104163908 original size:21 final size:20
Alignment explanation
Indices: 104163880--104163918 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
104163870 TTTAACATGA
*
104163880 ATTTATCCACCTCTAATTCC
1 ATTTATCCACCACTAATTCC
104163900 ATTTCATCCACCACTAATT
1 ATTT-ATCCACCACTAATT
104163919 TCCGTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.33, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTTATCCACCACTAATTCC
Found at i:104164014 original size:36 final size:36
Alignment explanation
Indices: 104164008--104164193 Score: 235
Period size: 36 Copynumber: 5.2 Consensus size: 36
104163998 CAATTGATCC
104164008 TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAAT
1 TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAAT
*
104164044 TGCTCTAA-T---A-T-CAATTTATCCCGCTCTAAT
1 TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAAT
104164074 TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAAT
1 TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAAT
* *
104164110 TTCTCTAACTGCAATTGCAATTTATCCTGCTCTAAT
1 TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAAT
*
104164146 TGCTCTAATTGCTCTAATAT-CAATTTCTTCC-GCTCTAAT
1 TGCTCTAATTG--C-AAT-TGCAATTT-ATCCTGCTCTAAT
104164185 TGCTCTAAT
1 TGCTCTAAT
104164194 GTCAATTTAG
Statistics
Matches: 132, Mismatches: 7, Indels: 19
0.84 0.04 0.12
Matches are distributed among these distances:
30 26 0.20
31 2 0.02
32 1 0.01
34 1 0.01
35 2 0.02
36 69 0.52
38 1 0.01
39 26 0.20
40 4 0.03
ACGTcount: A:0.25, C:0.24, G:0.09, T:0.42
Consensus pattern (36 bp):
TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAAT
Found at i:104164016 original size:27 final size:29
Alignment explanation
Indices: 104163981--104164090 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 29
104163971 CCCCTCTAAT
*
104163981 TGCTTTAATTG-C-AATTGCAATTGATCC
1 TGCTCTAATTGCCTAATTGCAATTGATCC
*
104164008 TGCTCTAATTG-C-AATTGCAATTTATCC
1 TGCTCTAATTGCCTAATTGCAATTGATCC
*
104164035 TGCTCTAATTGCTCTAATAT-CAATTTATCC
1 TGCTCTAATTGC-CTAAT-TGCAATTGATCC
*
104164065 CGCTCTAATTGCTCTAATTGCAATTG
1 TGCTCTAATTGC-CTAATTGCAATTG
104164091 CAATTTATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
27 36 0.49
29 2 0.03
30 35 0.47
31 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.41
Consensus pattern (29 bp):
TGCTCTAATTGCCTAATTGCAATTGATCC
Found at i:104164062 original size:93 final size:95
Alignment explanation
Indices: 104163952--104164154 Score: 302
Period size: 93 Copynumber: 2.1 Consensus size: 95
104163942 CATAAATCCC
*
104163952 GCTCTAATATCAATTTATCCCCCTCTAATTGCTTTAATTGCAATTGCAATTGATCCTGCTCTAA-
1 GCTCTAATATCAATTTATCCCCCTCTAATTGCTCTAATTGCAATTGCAATTGATCCTGCTCTAAT
104164016 T-TGCAATTGCAATTTATCCTGCTCTAATT
66 TATGCAATTGCAATTTATCCTGCTCTAATT
* *
104164045 GCTCTAATATCAATTTATCCCGCTCTAATTGCTCTAATTGCAATTGCAATTTATCCTGCTCTAAT
1 GCTCTAATATCAATTTATCCCCCTCTAATTGCTCTAATTGCAATTGCAATTGATCCTGCTCTAA-
104164110 TTCTCTAACTGCAATTGCAATTTATCCTGCTCTAATT
65 ---T-T-A-TGCAATTGCAATTTATCCTGCTCTAATT
104164147 GCTCTAAT
1 GCTCTAAT
104164155 TGCTCTAATA
Statistics
Matches: 98, Mismatches: 3, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
93 61 0.62
99 1 0.01
102 36 0.37
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (95 bp):
GCTCTAATATCAATTTATCCCCCTCTAATTGCTCTAATTGCAATTGCAATTGATCCTGCTCTAAT
TATGCAATTGCAATTTATCCTGCTCTAATT
Found at i:104164097 original size:66 final size:66
Alignment explanation
Indices: 104164008--104164216 Score: 242
Period size: 66 Copynumber: 3.0 Consensus size: 66
104163998 CAATTGATCC
*
104164008 TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAATTGCTCTAATATCAATTTATCCCGCTCTAA
1 TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAATTGCTCTAATATCAATTTATCCAGCTCTAA
104164073 T
66 T
* *
104164074 TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAATTTCTCTAACTGCAATTGCAATTTATCCTG
1 TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAATTGCTCTAA-T---A-T-CAATTTATCCAG
104164139 CTCTAAT
60 CTCTAAT
* * *
104164146 TGCTCTAATTGCTCTAATAT-CAATTTCTTCC-GCTCTAATTGCTCTAATGTCAATTTAGCCAGC
1 TGCTCTAATTG--C-AAT-TGCAATTT-ATCCTGCTCTAATTGCTCTAATATCAATTTATCCAGC
*
104164209 TCTGAT
61 TCTAAT
104164215 TG
1 TG
104164217 TAATTTATCA
Statistics
Matches: 124, Mismatches: 8, Indels: 19
0.82 0.05 0.13
Matches are distributed among these distances:
66 43 0.35
67 1 0.01
69 18 0.15
70 2 0.02
71 1 0.01
72 29 0.23
74 2 0.02
75 24 0.19
76 4 0.03
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.41
Consensus pattern (66 bp):
TGCTCTAATTGCAATTGCAATTTATCCTGCTCTAATTGCTCTAATATCAATTTATCCAGCTCTAA
T
Found at i:104164110 original size:21 final size:21
Alignment explanation
Indices: 104164086--104164148 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 21
104164076 CTCTAATTGC
104164086 AATTGCAATTTATCCTGCTCT
1 AATTGCAATTTATCCTGCTCT
* * *
104164107 AATTTC--TCTA-ACTG--C-
1 AATTGCAATTTATCCTGCTCT
104164122 AATTGCAATTTATCCTGCTCT
1 AATTGCAATTTATCCTGCTCT
104164143 AATTGC
1 AATTGC
104164149 TCTAATTGCT
Statistics
Matches: 30, Mismatches: 6, Indels: 12
0.62 0.12 0.25
Matches are distributed among these distances:
15 5 0.17
16 1 0.03
17 3 0.10
18 6 0.20
19 3 0.10
20 1 0.03
21 11 0.37
ACGTcount: A:0.25, C:0.24, G:0.10, T:0.41
Consensus pattern (21 bp):
AATTGCAATTTATCCTGCTCT
Found at i:104164151 original size:9 final size:9
Alignment explanation
Indices: 104164137--104164163 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
104164127 CAATTTATCC
104164137 TGCTCTAAT
1 TGCTCTAAT
104164146 TGCTCTAAT
1 TGCTCTAAT
104164155 TGCTCTAAT
1 TGCTCTAAT
104164164 ATCAATTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (9 bp):
TGCTCTAAT
Found at i:104164211 original size:30 final size:30
Alignment explanation
Indices: 104164147--104164216 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
104164137 TGCTCTAATT
**
104164147 GCTCTAATTGCTCTAATATCAATTTCTTCC
1 GCTCTAATTGCTCTAATATCAATTTCAGCC
*
104164177 GCTCTAATTGCTCTAATGTCAATTT-AGCC
1 GCTCTAATTGCTCTAATATCAATTTCAGCC
*
104164206 AGCTCTGATTG
1 -GCTCTAATTG
104164217 TAATTTATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 2 0.06
30 33 0.94
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (30 bp):
GCTCTAATTGCTCTAATATCAATTTCAGCC
Found at i:104168313 original size:20 final size:21
Alignment explanation
Indices: 104168266--104168314 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
104168256 ATTGTATACT
*
104168266 TGAAATAAAAAATCATAAAATC
1 TGAAA-AAAAAATCATAAAATA
*
104168288 TTAAAAAAAAATC-TAAAATA
1 TGAAAAAAAAATCATAAAATA
104168308 TGAAAAA
1 TGAAAAA
104168315 TTTAAAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 12 0.50
21 8 0.33
22 4 0.17
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.22
Consensus pattern (21 bp):
TGAAAAAAAAATCATAAAATA
Found at i:104168314 original size:21 final size:22
Alignment explanation
Indices: 104168266--104168314 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
104168256 ATTGTATACT
* *
104168266 TGAAATAAAAAATCATAAAATC
1 TGAAAAAAAAAATCATAAAATA
*
104168288 T-TAAAAAAAAATC-TAAAATA
1 TGAAAAAAAAAATCATAAAATA
104168308 TGAAAAA
1 TGAAAAA
104168315 TTTAAAAATG
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
20 7 0.32
21 14 0.64
22 1 0.05
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.22
Consensus pattern (22 bp):
TGAAAAAAAAAATCATAAAATA
Found at i:104168996 original size:24 final size:25
Alignment explanation
Indices: 104168950--104169007 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
104168940 AACTTAGTCC
104168950 ATTTATTTATATTTTTAAGAATTTAA
1 ATTT-TTTATATTTTTAAGAATTTAA
* * *
104168976 GTTTTTTATTTTTTTCA-AATTTAA
1 ATTTTTTATATTTTTAAGAATTTAA
104169000 ATTTTTTA
1 ATTTTTTA
104169008 ATATAATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 14 0.50
25 11 0.39
26 3 0.11
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (25 bp):
ATTTTTTATATTTTTAAGAATTTAA
Found at i:104169155 original size:19 final size:20
Alignment explanation
Indices: 104169133--104169172 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
104169123 ATCTAAAATT
104169133 TTAAATT-TACAA-AAAAAAA
1 TTAAATTCTA-AATAAAAAAA
104169152 TTAAATTCTAAATAAAAAAA
1 TTAAATTCTAAATAAAAAAA
104169172 T
1 T
104169173 ACAAAAACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
TTAAATTCTAAATAAAAAAA
Found at i:104170094 original size:18 final size:18
Alignment explanation
Indices: 104170073--104170111 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
104170063 GTTGTATCTT
104170073 TAATTAAATTATTATCCA
1 TAATTAAATTATTATCCA
104170091 TAATTAAATTATTATCCA
1 TAATTAAATTATTATCCA
104170109 TAA
1 TAA
104170112 AGTTGGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (18 bp):
TAATTAAATTATTATCCA
Found at i:104171811 original size:19 final size:19
Alignment explanation
Indices: 104171787--104171826 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
104171777 AAACCAAATC
104171787 AAGGGAGAACGAAAGGGAG
1 AAGGGAGAACGAAAGGGAG
*
104171806 AAGGGAGAACGAACGGGAG
1 AAGGGAGAACGAAAGGGAG
104171825 AA
1 AA
104171827 CGAAACCAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.47, C:0.07, G:0.45, T:0.00
Consensus pattern (19 bp):
AAGGGAGAACGAAAGGGAG
Found at i:104175284 original size:20 final size:20
Alignment explanation
Indices: 104175254--104175300 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
104175244 TAAAAATGAT
*
104175254 TAAAAAT-TTTAAATTTTAA
1 TAAAAATATTTAAAATTTAA
104175273 TAAAAATATTTAAAATTTAA
1 TAAAAATATTTAAAATTTAA
104175293 TAAAAATA
1 TAAAAATA
104175301 GGAAAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
TAAAAATATTTAAAATTTAA
Found at i:104175307 original size:20 final size:20
Alignment explanation
Indices: 104175268--104175307 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
104175258 AATTTTAAAT
***
104175268 TTTAATAAAAATATTTAAAA
1 TTTAATAAAAATAGGAAAAA
104175288 TTTAATAAAAATAGGAAAAA
1 TTTAATAAAAATAGGAAAAA
104175308 ATTATAAGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
TTTAATAAAAATAGGAAAAA
Found at i:104175575 original size:29 final size:27
Alignment explanation
Indices: 104175543--104175615 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 27
104175533 TTTTGATGCA
104175543 TTTTATAATTTTTATAAAATTTTATA-TATT
1 TTTTAT-ATTTTTATAAAA-TTTA-ACTA-T
*
104175573 TTTTATGTTTTTATTAAAATTTAACTAT
1 TTTTATATTTTTA-TAAAATTTAACTAT
104175601 TTTTAT-TTTTTATAA
1 TTTTATATTTTTATAA
104175616 TTTTTTTTGT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
26 3 0.08
27 6 0.15
28 8 0.20
29 12 0.30
30 11 0.28
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (27 bp):
TTTTATATTTTTATAAAATTTAACTAT
Found at i:104180132 original size:14 final size:14
Alignment explanation
Indices: 104180093--104180132 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
104180083 GTAAAATAAT
*
104180093 TAAATTTTTAAAAA
1 TAAAATTTTAAAAA
* *
104180107 TAAAAATATAAAAA
1 TAAAATTTTAAAAA
104180121 TAAAATTTTAAA
1 TAAAATTTTAAA
104180133 TTTTAAATTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TAAAATTTTAAAAA
Found at i:104183727 original size:23 final size:23
Alignment explanation
Indices: 104183701--104183746 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
104183691 ATCATGGTTG
*
104183701 AATTTGGATGTTAATCATCTCTT
1 AATTTGGATGATAATCATCTCTT
104183724 AATTTGGATGATAATCATCTCTT
1 AATTTGGATGATAATCATCTCTT
104183747 CTAGATATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (23 bp):
AATTTGGATGATAATCATCTCTT
Found at i:104186211 original size:25 final size:23
Alignment explanation
Indices: 104186176--104186223 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
104186166 ATATTTATTT
**
104186176 TTTTATTAATTTTTTAACAATAA
1 TTTTATTAATTTAATAACAATAA
104186199 TTTTATTAAAATTTAATAACAATAA
1 TTTTATT--AATTTAATAACAATAA
104186224 CAATAGTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (23 bp):
TTTTATTAATTTAATAACAATAA
Found at i:104186396 original size:46 final size:44
Alignment explanation
Indices: 104186303--104186396 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 44
104186293 ATTACAACAT
104186303 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
*
104186347 CATTCCATTCAACCAAACA-ATTGAATTACTGATTACAGTTCTATTC
1 CATTCCATTCAACCAAACACA-AGAA-TACT-ATTACAGTTCTATTC
104186393 CATT
1 CATT
104186397 ACAGCTCTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.48
45 4 0.09
46 19 0.41
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (44 bp):
CATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTC
Found at i:104186399 original size:16 final size:16
Alignment explanation
Indices: 104186378--104186449 Score: 108
Period size: 16 Copynumber: 4.5 Consensus size: 16
104186368 TGAATTACTG
104186378 ATTACAGTTCTATTCC
1 ATTACAGTTCTATTCC
*
104186394 ATTACAGCTCTATTCC
1 ATTACAGTTCTATTCC
* *
104186410 ATTACAGCTCTATTCA
1 ATTACAGTTCTATTCC
*
104186426 ATTACAGTCCTATTCC
1 ATTACAGTTCTATTCC
104186442 ATTACAGT
1 ATTACAGT
104186450 GAACCAAACG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.39
Consensus pattern (16 bp):
ATTACAGTTCTATTCC
Found at i:104186471 original size:20 final size:20
Alignment explanation
Indices: 104186446--104186490 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
104186436 TATTCCATTA
104186446 CAGTGAACCAAACGTACCAT
1 CAGTGAACCAAACGTACCAT
104186466 CAGTGAACCAAACGTACCAT
1 CAGTGAACCAAACGTACCAT
104186486 CAGTG
1 CAGTG
104186491 TTGATGGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.29, G:0.18, T:0.16
Consensus pattern (20 bp):
CAGTGAACCAAACGTACCAT
Found at i:104189742 original size:37 final size:37
Alignment explanation
Indices: 104189691--104189765 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
104189681 ACAAAAAGTA
** *
104189691 AACTAAACGTACCGCACTACATTGTCGCCTCAAATCC
1 AACTAAACACACCGCACTACACTGTCGCCTCAAATCC
104189728 AACTAAACACACCGCACTACACTGTCGCCTCAAATCC
1 AACTAAACACACCGCACTACACTGTCGCCTCAAATCC
104189765 A
1 A
104189766 CCCGTATCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.35, C:0.37, G:0.09, T:0.19
Consensus pattern (37 bp):
AACTAAACACACCGCACTACACTGTCGCCTCAAATCC
Found at i:104192367 original size:20 final size:20
Alignment explanation
Indices: 104192330--104192369 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
104192320 GACAAGATCT
*
104192330 ATCCCATTGCAAATATTCTC
1 ATCCCATTGCAAACATTCTC
104192350 ATCCCATTG-AAGACATTCTC
1 ATCCCATTGCAA-ACATTCTC
104192370 CCCATATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (20 bp):
ATCCCATTGCAAACATTCTC
Found at i:104199719 original size:16 final size:16
Alignment explanation
Indices: 104199698--104199730 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
104199688 TTGACCAACC
104199698 TTGTCTAAAAATAATG
1 TTGTCTAAAAATAATG
104199714 TTGTCTAAAAATAATG
1 TTGTCTAAAAATAATG
104199730 T
1 T
104199731 CCATGCATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (16 bp):
TTGTCTAAAAATAATG
Found at i:104204796 original size:48 final size:48
Alignment explanation
Indices: 104204684--104204799 Score: 126
Period size: 48 Copynumber: 2.4 Consensus size: 48
104204674 ATGTCCCTTG
* * * *
104204684 TAAGATCATGCATCTTTACCCGTCTTTTATTGCATGCCATATACCTCG
1 TAAGACCATACATCTTTACCCCTCTTTTATTGCATGCCATATACCTCA
* * * *
104204732 TATGACCATGCATCTTTACCCCTCTTTTATTGTATGCCATAT-CGCTTA
1 TAAGACCATACATCTTTACCCCTCTTTTATTGCATGCCATATAC-CTCA
* *
104204780 TAAGACGATACTTCTTTACC
1 TAAGACCATACATCTTTACC
104204800 AATTCAGAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 1 0.02
48 56 0.98
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.39
Consensus pattern (48 bp):
TAAGACCATACATCTTTACCCCTCTTTTATTGCATGCCATATACCTCA
Found at i:104208475 original size:11 final size:11
Alignment explanation
Indices: 104208455--104208502 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
104208445 ATTAGATAAA
*
104208455 TAATAATTTAT
1 TAATATTTTAT
104208466 TAATATTTTAAT
1 TAATATTTT-AT
*
104208478 ATGATATTTTAT
1 -TAATATTTTAT
*
104208490 TATTATTTTAT
1 TAATATTTTAT
104208501 TA
1 TA
104208503 GTATATAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 19 0.61
12 4 0.13
13 8 0.26
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (11 bp):
TAATATTTTAT
Found at i:104210382 original size:46 final size:46
Alignment explanation
Indices: 104210319--104210776 Score: 607
Period size: 46 Copynumber: 10.0 Consensus size: 46
104210309 GCTTTCTGAA
* * *
104210319 ATGAAATGTTTAAGACCATGATTGAAAGATACCATGGCAACATGAA
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
104210365 ATGAAATGTGTATGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
104210411 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
104210457 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
104210503 ATGAAATGTGTAAGACTATGGTTGAAAGATACCATGACAACATGAT
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
104210549 ATGAAATG-AGTAAGACCATGGTTGAAAGATACCATTGCAACATGAC
1 ATGAAATGTA-TAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * * * *
104210595 GGGAAATGAATAAGACCATGGTTGAAAGGTACCATGGCAGCGTGAC
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* **
104210641 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGGC
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
104210687 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * *
104210733 A-GAAAATG-AGTAAGACCACAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTA-TAAGACCATGGTTGAAAGATACCATGGCAACATG
104210777 GTAAAGATAA
Statistics
Matches: 374, Mismatches: 34, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
45 2 0.01
46 371 0.99
47 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:104211077 original size:16 final size:17
Alignment explanation
Indices: 104211056--104211089 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
104211046 AATGAGGGAG
104211056 AATGAAAT-ATTGATAT
1 AATGAAATGATTGATAT
104211072 AATGAAATGATTGATAT
1 AATGAAATGATTGATAT
104211089 A
1 A
104211090 TACTTATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (17 bp):
AATGAAATGATTGATAT
Found at i:104213875 original size:11 final size:11
Alignment explanation
Indices: 104213861--104213905 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
104213851 AGATAAATAT
104213861 TATTTTATTAA
1 TATTTTATTAA
*
104213872 TATTTTCATAAGA
1 TATTTT-ATTA-A
*
104213885 TATTTTATTAT
1 TATTTTATTAA
104213896 TATTTTATTA
1 TATTTTATTA
104213906 GTATATAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:104215790 original size:46 final size:46
Alignment explanation
Indices: 104215740--104216013 Score: 352
Period size: 46 Copynumber: 6.0 Consensus size: 46
104215730 GCTTTCTAAA
* * * *
104215740 ATGAAATGTGTAAGACCATAGTTAAAAGATACCATGGCAACATGAA
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
104215786 ATGAAATTTGTAAGACCATGGTTGAAATATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
104215832 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
104215878 GGGAAATGAATAAGACAATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
104215924 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
104215970 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
104216014 TCAAAGATAA
Statistics
Matches: 202, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 1 0.00
46 201 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:104216115 original size:13 final size:13
Alignment explanation
Indices: 104216097--104216126 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
104216087 TCAAATGAAG
104216097 AATGGTTATGTGA
1 AATGGTTATGTGA
*
104216110 AATGGTTGTGTGA
1 AATGGTTATGTGA
104216123 AATG
1 AATG
104216127 TTTACAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37
Consensus pattern (13 bp):
AATGGTTATGTGA
Found at i:104216315 original size:16 final size:17
Alignment explanation
Indices: 104216294--104216326 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
104216284 ATGAGAGAGC
104216294 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
104216310 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
104216327 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:104222037 original size:30 final size:32
Alignment explanation
Indices: 104221993--104222055 Score: 96
Period size: 30 Copynumber: 2.0 Consensus size: 32
104221983 TAATAAAGGT
104221993 AAAATTATATTTTAATCTCTTT-AAAATTATAA
1 AAAATTATATTTTAATCT-TTTAAAAATTATAA
104222025 AAAATTA-A-TTTAATCTTTTAAAAATTATAA
1 AAAATTATATTTTAATCTTTTAAAAATTATAA
104222055 A
1 A
104222056 GATATAGAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 3 0.10
30 19 0.63
31 1 0.03
32 7 0.23
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (32 bp):
AAAATTATATTTTAATCTTTTAAAAATTATAA
Found at i:104222169 original size:5 final size:5
Alignment explanation
Indices: 104222155--104222185 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
104222145 CGTGAAAACA
*
104222155 CGAGG TGAGG CGAGG CGAGG CGAGG CGAGG C
1 CGAGG CGAGG CGAGG CGAGG CGAGG CGAGG C
104222186 TCACCCTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.19, C:0.19, G:0.58, T:0.03
Consensus pattern (5 bp):
CGAGG
Found at i:104233147 original size:30 final size:30
Alignment explanation
Indices: 104233106--104233163 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
104233096 ATATATTTCT
*
104233106 AACTTAACCACCCCGGAGTTGACAAAGTAA
1 AACTGAACCACCCCGGAGTTGACAAAGTAA
104233136 AACTGAACCACCCCGGAGTTGACAAAGT
1 AACTGAACCACCCCGGAGTTGACAAAGT
104233164 TAACATTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.16
Consensus pattern (30 bp):
AACTGAACCACCCCGGAGTTGACAAAGTAA
Found at i:104234438 original size:22 final size:22
Alignment explanation
Indices: 104234387--104234439 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
104234377 TTTAATAGAT
* *
104234387 ATAATTAAATAATATAACTTTTA
1 ATAA-TAAAAAATATAACTTATA
*
104234410 ATAATAAAAAATATAACTTATC
1 ATAATAAAAAATATAACTTATA
*
104234432 ATTATAAA
1 ATAATAAA
104234440 TAGTAAAAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (22 bp):
ATAATAAAAAATATAACTTATA
Found at i:104236614 original size:27 final size:28
Alignment explanation
Indices: 104236577--104236716 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
104236567 AGCATGGCTG
* *
104236577 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
104236603 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
104236631 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
104236658 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
104236685 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
104236712 CCAGA
1 CCAGA
104236717 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
26 5 0.05
27 84 0.79
28 17 0.16
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:104238372 original size:26 final size:26
Alignment explanation
Indices: 104238336--104238445 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
104238326 CATGAAATTC
104238336 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
104238362 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
104238388 TTATCAT-AGAACATTTGCCTAACCTA
1 TTATCATGA-AACATTTACCTAACCCA
* *
104238414 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
104238440 TTATCA
1 TTATCA
104238446 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
25 1 0.01
26 77 0.99
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:104239996 original size:10 final size:10
Alignment explanation
Indices: 104239983--104240010 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
104239973 ATAAATAATG
104239983 AAAGATAAGT
1 AAAGATAAGT
104239993 AAAGATAAGT
1 AAAGATAAGT
104240003 AAAGATAA
1 AAAGATAA
104240011 ATGAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (10 bp):
AAAGATAAGT
Done.