Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 325 of 352
Found at i:105179511 original size:40 final size:40
Alignment explanation
Indices: 105179200--105179492 Score: 500
Period size: 40 Copynumber: 7.3 Consensus size: 40
105179190 GCATGACAAT
105179200 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
* *
105179240 TGGTTGTTATATTCGGGTTAAGTCCCAAAGGCATTCGTGC
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
* *
105179280 TGGTTGTTATATTCGGGTTAAGTCCTGAAGGCATTCGTGC
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
*
105179320 TGGTTGTTATATTCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
*
105179360 TAGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGT-C
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
*
105179399 TGGTTATTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
105179439 TGGTTGTTATA-CTCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TGGTTGTTATATC-CGGGTTAAGTCCCGAAGGCATTCGTGC
105179479 TGGTTGTTATATCC
1 TGGTTGTTATATCC
105179493 TGGCTAAATT
Statistics
Matches: 240, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
39 38 0.16
40 201 0.84
41 1 0.00
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.35
Consensus pattern (40 bp):
TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
Found at i:105187161 original size:40 final size:40
Alignment explanation
Indices: 105187117--105187389 Score: 483
Period size: 40 Copynumber: 6.8 Consensus size: 40
105187107 GCATGACAAT
105187117 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
105187157 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
105187197 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
105187237 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
*
105187277 TGGTTATTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
* *
105187317 TGGTTGTTATACCCGGGTTAAGTCCCAAAGGCATTCGTGC
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
* * * *
105187357 TGGTTGTTATATCCTGGCTAAATTCCGAAGGCA
1 TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCA
105187390 ATTGGGTTCA
Statistics
Matches: 223, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 223 1.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.32
Consensus pattern (40 bp):
TGGTTGTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGC
Found at i:105189591 original size:46 final size:46
Alignment explanation
Indices: 105189486--105189763 Score: 371
Period size: 46 Copynumber: 6.0 Consensus size: 46
105189476 TTTGACATGA
* * * *
105189486 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTA--CA--CA-TTTCATGTCAGGT
* ** * *
105189536 TGCCATGGTATCTTTCAACCATGGTCGTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGT
105189582 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAG-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT-GTCAGGT
* *
105189628 TGCCATGGTATCTTTCAACCATGGTCTTGCACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGT
*
105189674 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGT
*
105189720 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAG
105189764 AGAGCACACT
Statistics
Matches: 209, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
45 4 0.02
46 179 0.86
47 1 0.00
50 25 0.12
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCAGGT
Found at i:105196294 original size:560 final size:560
Alignment explanation
Indices: 105193681--105196482 Score: 4417
Period size: 560 Copynumber: 5.0 Consensus size: 560
105193671 CACGCCCGTG
* * * *
105193681 TCCCATCACATGGCCTACCACATGGGCGACCACACGCCCGTGCGACGTCGACAATGAGGTTTTTG
1 TCCCATCACACGGCCTACCACATGGGCGACCACACGCCCATGCGGCGTCGACAGTGAGGTTTTTG
* *
105193746 GCTTTCGTTGAAACCTCATTTTCTGTGCAATCAAATACACACCTGATATCGATTCGCTGATATTG
66 GCTTTCGTTGAAACCTCATTTTCTGTGCAATCGAATACACACCTGATATCTATTCGCTGATATTG
* ** * * **
105193811 CAACCCCGAGATCACCAAAACCTATAATTGACATTACCAAAGCTGGAATTTAGTAACAAAAATGA
131 CAACCCCGAGATCACCAAAACCTATAATCGACATTACCAAAGCCCGAATTCAGTAACACAAACAA
* * * *
105193876 AAACTAAACCAGAAATATTTCCCCAACAAAACCTTAGAATGTCAAAAAGTGAATTCGGTCACTTA
196 AAACTAAACAAGAAATATTTCCCCAACGAAACCTTAGAACGTCAAAAAGTGAACTCGGTCACTTA
* * ** *
105193941 CCACAGCGAAATGAATCCCTAACATTCAAATCTTTGTAGAAGCACTCGTCGTTGCTAGATCTTCA
261 CCACAACGAAATGAATCCCTAACGTTCAAATCTCCGTAGAAGCACTAGTCGTTGCTAGATCTTCA
*
105194006 CCTAATTCGAAAGAACCAACAATAGCCCTCTATCAGAAAACCAACTATGGAACAACAAAATAGAG
326 CCTAATTCGAAAGAACCAACAATAGCCCTCTATCAGAAAACCAACTATGGAACGACAAAATAGAG
* * * * *
105194071 ATAAAACATTCCTTACCGAAAGAGCGAATTCAATCATTGAACAAGAAGGAGGTAAAATGGAAACC
391 ATAAAACATTACTTACCGAACGAGCGAATCCAATCATTAAACAAGAAGGAGGTAAAATGAAAACC
* * * * * *
105194136 AAGAGAGTGGAGGAAGGAAACAAGGAAAATTCAGCAAGAGGGTGAAAAATAGACATCAAAAAAAT
456 GAGAGAGTAGAGGAAGGAAACAAGGAAAATTCGGCAAGAGGGTGAAAAATAGACGTCAGAAAGAT
105194201 AGAGAGACTTTTGAGAAAAAAGATATGGATTAAAACCAAA
521 AGAGAGACTTTTGAGAAAAAAGATATGGATTAAAACCAAA
* * * * * * *
105194241 TCCCCTCACACGGCCTACCACACGGGCGACTACATGCCCGTACGGTGTCGACAGTGAGGTTTTTG
1 TCCCATCACACGGCCTACCACATGGGCGACCACACGCCCATGCGGCGTCGACAGTGAGGTTTTTG
* * * *
105194306 GCTTTCGTTGAAACCTCATTTCCTGTGCAATCGAATACACAGCTAATATCGATTCGCTGATATTG
66 GCTTTCGTTGAAACCTCATTTTCTGTGCAATCGAATACACACCTGATATCTATTCGCTGATATTG
* *
105194371 CAACCCTGAGATCACCAAAACCTATAATCGACATTACCAAAGCCCGAATTTAGTAACACAAACAA
131 CAACCCCGAGATCACCAAAACCTATAATCGACATTACCAAAGCCCGAATTCAGTAACACAAACAA
* * * *
105194436 AAACTAAACCAGAAGTATTTCCCCAATGAAACCTTAGAACGTCAAAAAGTGAACTTGGTCACTTA
196 AAACTAAACAAGAAATATTTCCCCAACGAAACCTTAGAACGTCAAAAAGTGAACTCGGTCACTTA
* * * ** *
105194501 CAACAACGAAATGAATCCCTAATGATCAAATCTCCACAGAAGCACAAGTCGTTGCTAGATCTTCA
261 CCACAACGAAATGAATCCCTAACGTTCAAATCTCCGTAGAAGCACTAGTCGTTGCTAGATCTTCA
* * * *
105194566 CCTAATCCAAAAGAACCAACAATAGCCCTTTATTAGAAAACCAACTATGGAACGACAAAATAGAG
326 CCTAATTCGAAAGAACCAACAATAGCCCTCTATCAGAAAACCAACTATGGAACGACAAAATAGAG
* * * *
105194631 ATAAAACATTACTTACCGAACGAGCAAATCCAATCATTGAACAAGAAAGAGGTAAAACGAAAACC
391 ATAAAACATTACTTACCGAACGAGCGAATCCAATCATTAAACAAGAAGGAGGTAAAATGAAAACC
* *
105194696 GAGAGACT-GAGGAAGGAAACAAGGAAAATTCGGCAAGCA-GGTGAAAAATAAACGTCAGAAAGA
456 GAGAGAGTAGAGGAAGGAAACAAGGAAAATTCGGCAAG-AGGGTGAAAAATAGACGTCAGAAAGA
*
105194759 TAGAGAGACTTTTGAGAAAAAAGACATGGATTAAAACCAAA
520 TAGAGAGACTTTTGAGAAAAAAGATATGGATTAAAACCAAA
* ** * * *
105194800 TCCCATCATACGGCCTACCACACAGGCGACCACACG-CTAGTGCAGCATCGACAGTGAGGTTTTT
1 TCCCATCACACGGCCTACCACATGGGCGACCACACGCCCA-TGCGGCGTCGACAGTGAGGTTTTT
* * * * * *
105194864 GGTTTTCGTTGAAACCTCATTTTATGTGTAATCGGATACACACTTAATAT-TGATTCGCTGATAT
65 GGCTTTCGTTGAAACCTCATTTTCTGTGCAATCGAATACACACCTGATATCT-ATTCGCTGATAT
* * *
105194928 TGCAACCCCGAGATCACCAAAACCTATAATCAAGATTACCAAAGCCTGAATTCAGTAACACAAAC
129 TGCAACCCCGAGATCACCAAAACCTATAATCGACATTACCAAAGCCCGAATTCAGTAACACAAAC
* *
105194993 AAAAACTAAACAAGAAATAATTCCCCAACGAAACCTTAGAACGTCAAAAAGTGAACTTGGTCACT
194 AAAAACTAAACAAGAAATATTTCCCCAACGAAACCTTAGAACGTCAAAAAGTGAACTCGGTCACT
* *
105195058 TACCACAATGAAATGAATCCCTAACGTTCAAATCTCCGCAGAAGCACTAGTCGTTGCTAGATCTT
259 TACCACAACGAAATGAATCCCTAACGTTCAAATCTCCGTAGAAGCACTAGTCGTTGCTAGATCTT
* * *
105195123 CACCTGATTCGAAAGAACCAACAATAGCCCTCTATCAGAAAACCAACTATGGAAAGAAAAAATAG
324 CACCTAATTCGAAAGAACCAACAATAGCCCTCTATCAGAAAACCAACTATGGAACGACAAAATAG
* **
105195188 AGATAAAACATTACTTACCGAATGAGCGAATCCAATCATTAAACAAGAAGGAGGTAAAACAAAAA
389 AGATAAAACATTACTTACCGAACGAGCGAATCCAATCATTAAACAAGAAGGAGGTAAAATGAAAA
* * *
105195253 TCGAAAGAGTGGAGGAAGGAAACAAGGAAAATTCGGCAAGAGGGTGAAAAATAGACGTCAGAAAG
454 CCGAGAGAGTAGAGGAAGGAAACAAGGAAAATTCGGCAAGAGGGTGAAAAATAGACGTCAGAAAG
105195318 ATAGAGAGACTTTTGAGAAAAAAGATATGGATTAAAACCAAA
519 ATAGAGAGACTTTTGAGAAAAAAGATATGGATTAAAACCAAA
105195360 TCCCATCACACGGCCTACCACATGGGCGACCACACGCCCATGCGGCGTCGACAGTGAGGTTTTTG
1 TCCCATCACACGGCCTACCACATGGGCGACCACACGCCCATGCGGCGTCGACAGTGAGGTTTTTG
105195425 GCTTTCGTTGAAACCTCATTTT-TGTGCAATCGAATACACACCTGATATCTATTCGCTGATATTG
66 GCTTTCGTTGAAACCTCATTTTCTGTGCAATCGAATACACACCTGATATCTATTCGCTGATATTG
* * *
105195489 CAACCTCAAGATCACCAAAACCTATAATCGACATTACCAAAGCCCGAATTCAGTAAGACAAACAA
131 CAACCCCGAGATCACCAAAACCTATAATCGACATTACCAAAGCCCGAATTCAGTAACACAAACAA
* * * *
105195554 AAACTAAGCAAGAAATAATTCCCCAACGAAACCTTAGAACGTCAAAAAGTGAACTCAGTCATTTA
196 AAACTAAACAAGAAATATTTCCCCAACGAAACCTTAGAACGTCAAAAAGTGAACTCGGTCACTTA
*
105195619 CCACAACGAAATGAATCCCTAACGTTCAAATCTCCGTAGAAACACTAGTCGTTGCTAGATCTTCA
261 CCACAACGAAATGAATCCCTAACGTTCAAATCTCCGTAGAAGCACTAGTCGTTGCTAGATCTTCA
* * *
105195684 CCTAATCCGAAAGAATCAACAATAGCCCTTTATCAGAAAACCAACTATGGAACGACAAAATAGAG
326 CCTAATTCGAAAGAACCAACAATAGCCCTCTATCAGAAAACCAACTATGGAACGACAAAATAGAG
* * *
105195749 ATAAAACATTACTTAACGAATGAGCGAATCCAATCATTAAACAAGAAGGAGGTAAAATGTAAACC
391 ATAAAACATTACTTACCGAACGAGCGAATCCAATCATTAAACAAGAAGGAGGTAAAATGAAAACC
105195814 GAGAGAGTAGAGGAAGGAAACAAGGAAAATTCGGCAAGAGGGTGAAAAATAGACGTCAGAAAGAT
456 GAGAGAGTAGAGGAAGGAAACAAGGAAAATTCGGCAAGAGGGTGAAAAATAGACGTCAGAAAGAT
105195879 AGAGAGACTTTTGAGAAAAAAGATATGGATTAAAACCAAA
521 AGAGAGACTTTTGAGAAAAAAGATATGGATTAAAACCAAA
105195919 TCCCATCACACGGCCTACCACATGGGCGACCACACGCCCATGCGGCGTCGACAGTGAGGTTTTTG
1 TCCCATCACACGGCCTACCACATGGGCGACCACACGCCCATGCGGCGTCGACAGTGAGGTTTTTG
* *
105195984 GCTTTCGTTGAAACCTCATTTTTTGTGCAATCGAATACACACCTGATATCTATTCACTGATATTG
66 GCTTTCGTTGAAACCTCATTTTCTGTGCAATCGAATACACACCTGATATCTATTCGCTGATATTG
* * * * *
105196049 CAACCTCAAGATCACCAAAACCTATAATCGACAATACTAAAGCCCGAATTCAGTAAGACAAACAA
131 CAACCCCGAGATCACCAAAACCTATAATCGACATTACCAAAGCCCGAATTCAGTAACACAAACAA
*
105196114 AAACTAAACTAGAAATATTTCCCCAACGAAACCTTAGAACGTCAAAAAGTGAACTCGGTCACTTA
196 AAACTAAACAAGAAATATTTCCCCAACGAAACCTTAGAACGTCAAAAAGTGAACTCGGTCACTTA
*
105196179 CCACAACAAAATGAATCCCTAACGTTCAAATCTCCGTAGAAGCACTAGTCGTTGCTAGATCTTCA
261 CCACAACGAAATGAATCCCTAACGTTCAAATCTCCGTAGAAGCACTAGTCGTTGCTAGATCTTCA
* * *
105196244 GCTAATTTGAAAGAACCAACAATAGCCCTCTATCATAAAACCAACTATGGAACGACAAAATAGAG
326 CCTAATTCGAAAGAACCAACAATAGCCCTCTATCAGAAAACCAACTATGGAACGACAAAATAGAG
* *
105196309 ATAAAACATTACTTACCGAACGAGCGAATCCAATCATTAAATAAGAAGGAGGTAAAATGGAAACC
391 ATAAAACATTACTTACCGAACGAGCGAATCCAATCATTAAACAAGAAGGAGGTAAAATGAAAACC
105196374 GAGAGAGTAGAGGAAGGAAACAAGGAAAATTCGGCAAGAGGGTGAAAAATAGACGTCAGAAAGAT
456 GAGAGAGTAGAGGAAGGAAACAAGGAAAATTCGGCAAGAGGGTGAAAAATAGACGTCAGAAAGAT
*
105196439 AGAGAGACTTTTGAGAAAAGAGATATGGATTAAAACCAAA
521 AGAGAGACTTTTGAGAAAAAAGATATGGATTAAAACCAAA
105196479 TCCC
1 TCCC
105196483 CACTAAACAA
Statistics
Matches: 2068, Mismatches: 166, Indels: 16
0.92 0.07 0.01
Matches are distributed among these distances:
558 1 0.00
559 1027 0.50
560 1038 0.50
561 2 0.00
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.21
Consensus pattern (560 bp):
TCCCATCACACGGCCTACCACATGGGCGACCACACGCCCATGCGGCGTCGACAGTGAGGTTTTTG
GCTTTCGTTGAAACCTCATTTTCTGTGCAATCGAATACACACCTGATATCTATTCGCTGATATTG
CAACCCCGAGATCACCAAAACCTATAATCGACATTACCAAAGCCCGAATTCAGTAACACAAACAA
AAACTAAACAAGAAATATTTCCCCAACGAAACCTTAGAACGTCAAAAAGTGAACTCGGTCACTTA
CCACAACGAAATGAATCCCTAACGTTCAAATCTCCGTAGAAGCACTAGTCGTTGCTAGATCTTCA
CCTAATTCGAAAGAACCAACAATAGCCCTCTATCAGAAAACCAACTATGGAACGACAAAATAGAG
ATAAAACATTACTTACCGAACGAGCGAATCCAATCATTAAACAAGAAGGAGGTAAAATGAAAACC
GAGAGAGTAGAGGAAGGAAACAAGGAAAATTCGGCAAGAGGGTGAAAAATAGACGTCAGAAAGAT
AGAGAGACTTTTGAGAAAAAAGATATGGATTAAAACCAAA
Found at i:105202025 original size:40 final size:40
Alignment explanation
Indices: 105201970--105202116 Score: 181
Period size: 40 Copynumber: 3.7 Consensus size: 40
105201960 CACCGGCTTG
* * * **
105201970 AAGCCTGCTAGGCACTAAGCCTGTATATCACACTGGGTCA
1 AAGCCTGCTAGGCACTAAGCCTGAATAACACACCGGCACA
* *
105202010 AAGCCTTCTAGGCACTAAGCCTGAATAACACACCGGCACG
1 AAGCCTGCTAGGCACTAAGCCTGAATAACACACCGGCACA
* *
105202050 AAGCCTGCTAGGCACAAAGCCTGAAT-A-ACTCCGGCACA
1 AAGCCTGCTAGGCACTAAGCCTGAATAACACACCGGCACA
* *
105202088 AAGCCTGCTAGGCACCAAGCTTGAATAAC
1 AAGCCTGCTAGGCACTAAGCCTGAATAAC
105202117 TTATCGGCAC
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
38 33 0.36
39 2 0.02
40 57 0.62
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.17
Consensus pattern (40 bp):
AAGCCTGCTAGGCACTAAGCCTGAATAACACACCGGCACA
Found at i:105202126 original size:78 final size:80
Alignment explanation
Indices: 105201959--105202116 Score: 203
Period size: 78 Copynumber: 2.0 Consensus size: 80
105201949 AACATTTGAT
** * * * ** *
105201959 ACACCGGCTTGAAGCCTGCTAGGCACTAAGCCTGTATATCACACTGGGTCAAAGCCTTCTAGGCA
1 ACACCGGCACGAAGCCTGCTAGGCACAAAGCCTGTATATAACACCGGCACAAAGCCTGCTAGGCA
*
105202024 CTAAGCCTGAATAAC
66 CCAAGCCTGAATAAC
*
105202039 ACACCGGCACGAAGCCTGCTAGGCACAAAGCCTG-A-ATAACTCCGGCACAAAGCCTGCTAGGCA
1 ACACCGGCACGAAGCCTGCTAGGCACAAAGCCTGTATATAACACCGGCACAAAGCCTGCTAGGCA
*
105202102 CCAAGCTTGAATAAC
66 CCAAGCCTGAATAAC
105202117 TTATCGGCAC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
78 35 0.52
79 1 0.01
80 31 0.46
ACGTcount: A:0.31, C:0.30, G:0.22, T:0.17
Consensus pattern (80 bp):
ACACCGGCACGAAGCCTGCTAGGCACAAAGCCTGTATATAACACCGGCACAAAGCCTGCTAGGCA
CCAAGCCTGAATAAC
Found at i:105202131 original size:24 final size:23
Alignment explanation
Indices: 105202098--105202215 Score: 83
Period size: 24 Copynumber: 5.4 Consensus size: 23
105202088 AAGCCTGCTA
*
105202098 GGCACCAAGCTTGAATAACTTATC
1 GGCACTAAGCTTGAATAAC-TATC
105202122 GGCACTAAGCTTGAATAAC-ATC
1 GGCACTAAGCTTGAATAACTATC
* * *
105202144 AGCACGAAGCCTG-----CTA--
1 GGCACTAAGCTTGAATAACTATC
105202160 GGCACTAAGCTTGAATAACTCATC
1 GGCACTAAGCTTGAATAACT-ATC
* * *
105202184 GGCACTAAACCTGAATAAC-ACC
1 GGCACTAAGCTTGAATAACTATC
*
105202206 GGCACGAAGC
1 GGCACTAAGC
105202216 CTACTAGGCA
Statistics
Matches: 73, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
16 10 0.14
17 1 0.01
18 1 0.01
21 2 0.03
22 24 0.33
24 35 0.48
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (23 bp):
GGCACTAAGCTTGAATAACTATC
Found at i:105202137 original size:62 final size:62
Alignment explanation
Indices: 105202060--105202240 Score: 265
Period size: 62 Copynumber: 2.9 Consensus size: 62
105202050 AAGCCTGCTA
* * * *
105202060 GGCACAAAGCCTGAATAACTCCGGCACAAAGCCTGCTAGGCACCAAGCTTGAATAACTTATC
1 GGCACTAAGCCTGAATAACTCCGGCACGAAGCCTGCTAGGCACTAAGCTTGAATAACTCATC
* *
105202122 GGCACTAAGCTTGAATAACAT-CAGCACGAAGCCTGCTAGGCACTAAGCTTGAATAACTCATC
1 GGCACTAAGCCTGAATAAC-TCCGGCACGAAGCCTGCTAGGCACTAAGCTTGAATAACTCATC
* * *
105202184 GGCACTAAACCTGAATAACACCGGCACGAAGCCTACTAGGCACTAAGCTTGAATAAC
1 GGCACTAAGCCTGAATAACTCCGGCACGAAGCCTGCTAGGCACTAAGCTTGAATAAC
105202241 AACAGCATGA
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
62 105 0.99
63 1 0.01
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.18
Consensus pattern (62 bp):
GGCACTAAGCCTGAATAACTCCGGCACGAAGCCTGCTAGGCACTAAGCTTGAATAACTCATC
Found at i:105202226 original size:100 final size:102
Alignment explanation
Indices: 105202009--105202293 Score: 304
Period size: 100 Copynumber: 2.8 Consensus size: 102
105201999 ACACTGGGTC
* * *
105202009 AAAGCCTTCTAGGCACTAAGCCTGAATAACACACCGGCACGAAGCCTGCTAGGCACAAAGCCTGA
1 AAAGCCTACTAGGCACTAAGCTTGAATAACACA---GCACGAAGCCTGCTAGGCACTAAGCCTGA
* * **
105202074 ATAACTC--CGGCAC-AAAGCCTGCTAGGCACCAAGCTTG
63 ATAACTCATCGGCACTAAAGCCTGATAGACACCAAGCACG
* * * *
105202111 AATAACTTA-TCGGCACTAAGCTTGAATAACATCAGCACGAAGCCTGCTAGGCACTAAGCTTGAA
1 AA-AGCCTACTAGGCACTAAGCTTGAATAACA-CAGCACGAAGCCTGCTAGGCACTAAGCCTGAA
*
105202175 TAACTCATCGGCACTAAA-CCTGAATA-ACACC-GGCACG
64 TAACTCATCGGCACTAAAGCCTG-ATAGACACCAAGCACG
* *
105202212 -AAGCCTACTAGGCACTAAGCTTGAATAACAACAGCATGAAGCCTGCTAGGCACTAAGCCTAAAT
1 AAAGCCTACTAGGCACTAAGCTTGAATAAC-ACAGCACGAAGCCTGCTAGGCACTAAGCCTGAAT
105202276 AA--CATCGGCACT-AAGCCT
65 AACTCATCGGCACTAAAGCCT
105202294 ACTACTTATA
Statistics
Matches: 156, Mismatches: 18, Indels: 22
0.80 0.09 0.11
Matches are distributed among these distances:
97 2 0.01
98 13 0.08
99 4 0.03
100 87 0.56
101 4 0.03
102 36 0.23
103 10 0.06
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.18
Consensus pattern (102 bp):
AAAGCCTACTAGGCACTAAGCTTGAATAACACAGCACGAAGCCTGCTAGGCACTAAGCCTGAATA
ACTCATCGGCACTAAAGCCTGATAGACACCAAGCACG
Found at i:105202237 original size:38 final size:38
Alignment explanation
Indices: 105202184--105202297 Score: 147
Period size: 38 Copynumber: 3.0 Consensus size: 38
105202174 ATAACTCATC
* *
105202184 GGCACTAAACCTGAATAACACCGGCACGAAGCCTACTA
1 GGCACTAAGCCTGAATAACAACGGCACGAAGCCTACTA
* * * *
105202222 GGCACTAAGCTTGAATAACAACAGCATGAAGCCTGCTA
1 GGCACTAAGCCTGAATAACAACGGCACGAAGCCTACTA
* * *
105202260 GGCACTAAGCCTAAATAACATCGGCACTAAGCCTACTA
1 GGCACTAAGCCTGAATAACAACGGCACGAAGCCTACTA
105202298 CTTATAAGGC
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 63 1.00
ACGTcount: A:0.37, C:0.28, G:0.18, T:0.17
Consensus pattern (38 bp):
GGCACTAAGCCTGAATAACAACGGCACGAAGCCTACTA
Found at i:105203466 original size:24 final size:24
Alignment explanation
Indices: 105203416--105203467 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
105203406 AATCAATGTC
* **
105203416 AAATATATTATGCAAAGAAATGGT
1 AAATATATTATACAAAGAAATAAT
* *
105203440 AAATATATTATACTAATAAATAAT
1 AAATATATTATACAAAGAAATAAT
105203464 AAAT
1 AAAT
105203468 CTACTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.56, C:0.04, G:0.08, T:0.33
Consensus pattern (24 bp):
AAATATATTATACAAAGAAATAAT
Found at i:105209230 original size:20 final size:20
Alignment explanation
Indices: 105209205--105209242 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
105209195 ATATATGCTA
105209205 CAGCTTTACCCATAATGTTG
1 CAGCTTTACCCATAATGTTG
105209225 CAGCTTTACCCATAATGT
1 CAGCTTTACCCATAATGT
105209243 AGTAGCGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (20 bp):
CAGCTTTACCCATAATGTTG
Found at i:105209788 original size:24 final size:24
Alignment explanation
Indices: 105209744--105209795 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
105209734 AATCAACGTC
* *
105209744 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
105209768 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATACT
105209792 AAAT
1 AAAT
105209796 CTTTTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:105211988 original size:26 final size:26
Alignment explanation
Indices: 105211939--105211995 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
105211929 TATTTTGTTA
* * *
105211939 TATTTGCATTTTACTATATGTTATATG
1 TATTTTCATTATACTATATATTAT-TG
105211966 TATTTTCATTATA-TATATATTATTG
1 TATTTTCATTATACTATATATTATTG
105211991 -ATTTT
1 TATTTT
105211996 ACTATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 5 0.19
25 2 0.07
26 9 0.33
27 11 0.41
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (26 bp):
TATTTTCATTATACTATATATTATTG
Found at i:105212074 original size:29 final size:28
Alignment explanation
Indices: 105212009--105212075 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 28
105211999 ATATTTTATC
*
105212009 TATTATATTATTATATATTTTTAATTTT
1 TATTATATTATTATATATTTTTAATTTA
105212037 TATCATATATTA-TATATATTATTTATATTTA
1 TAT--TATATTATTATATATT-TTTA-ATTTA
105212068 TATTATAT
1 TATTATAT
105212076 GTTTTAGTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
28 3 0.09
29 13 0.38
30 11 0.32
31 7 0.21
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (28 bp):
TATTATATTATTATATATTTTTAATTTA
Found at i:105212139 original size:24 final size:23
Alignment explanation
Indices: 105211966--105212123 Score: 54
Period size: 22 Copynumber: 7.0 Consensus size: 23
105211956 ATGTTATATG
105211966 TATTTTCATTA-TATATATATTAT-
1 TATTTT-ATTATTATAT-TATTATA
* *
105211989 TGATTTTACTA-TATTTTATCTAT-
1 T-ATTTTATTATTATATTAT-TATA
* *
105212012 TATATTATTA-TATATTTTTA-A
1 TATTTTATTATTATATTATTATA
*
105212033 T-TTTTATCA-TATATTA-TATA
1 TATTTTATTATTATATTATTATA
105212053 TATTATT-TATATT-TA-TATTATA
1 TATT-TTAT-TATTATATTATTATA
* * * *
105212075 TGTTTTAGTA-CATATTATTTTTA
1 TATTTTATTATTATATTA-TTATA
*
105212098 TATATTATATATTATATTATTCATA
1 TATTTTAT-TATTATATTATT-ATA
105212123 T
1 T
105212124 TATTATATAT
Statistics
Matches: 100, Mismatches: 19, Indels: 30
0.67 0.13 0.20
Matches are distributed among these distances:
19 2 0.02
20 14 0.14
21 14 0.14
22 30 0.30
23 22 0.22
24 9 0.09
25 9 0.09
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (23 bp):
TATTTTATTATTATATTATTATA
Found at i:105212251 original size:5 final size:5
Alignment explanation
Indices: 105212243--105212304 Score: 51
Period size: 5 Copynumber: 12.8 Consensus size: 5
105212233 TATATTCTTC
* *
105212243 TTATA TTATA TTATA TTATA -TAT- TT-TA TTACA TATATT TTATTA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA T-TATA TTA-TA TTATA
*
105212292 TGAT- TTATA TTAT
1 TTATA TTATA TTAT
105212305 TACATATTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
3 1 0.02
4 9 0.20
5 28 0.62
6 7 0.16
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:105212266 original size:17 final size:17
Alignment explanation
Indices: 105212244--105212292 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
105212234 ATATTCTTCT
105212244 TATATTATATTATATTA
1 TATATTATATTATATTA
* *
105212261 TATATTTTATTACA-TA
1 TATATTATATTATATTA
*
105212277 TATTTTATTATTATAT
1 TATATTA-TATTATAT
105212293 GATTTATATT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 7 0.28
17 18 0.72
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (17 bp):
TATATTATATTATATTA
Found at i:105212289 original size:34 final size:33
Alignment explanation
Indices: 105212251--105212318 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
105212241 TCTTATATTA
* *
105212251 TATTATATTATATATTTTATTACATATATTTTAT
1 TATTATATGATATATATTATTACATAT-TTTTAT
*
105212285 TATTATATGATTTATATTATTACATATTTTTAT
1 TATTATATGATATATATTATTACATATTTTTAT
105212318 T
1 T
105212319 TGTAAATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 7 0.23
34 24 0.77
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (33 bp):
TATTATATGATATATATTATTACATATTTTTAT
Found at i:105212302 original size:17 final size:15
Alignment explanation
Indices: 105212220--105212314 Score: 83
Period size: 14 Copynumber: 6.4 Consensus size: 15
105212210 CCCATTAGAT
105212220 TATTATTATT-TTATA
1 TATT-TTATTATTATA
*
105212235 TATTCTTCTTA-TAT-
1 TATT-TTATTATTATA
*
105212249 TATATTA-TATTATA
1 TATTTTATTATTATA
*
105212263 TATTTTATTA-CATA
1 TATTTTATTATTATA
105212277 TATTTTATTATTATA
1 TATTTTATTATTATA
*
105212292 TGATTTATATTATTACA
1 T-ATTT-TATTATTATA
105212309 TATTTT
1 TATTTT
105212315 TATTTGTAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
12 2 0.03
13 5 0.08
14 22 0.34
15 18 0.28
16 8 0.12
17 10 0.15
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (15 bp):
TATTTTATTATTATA
Found at i:105224932 original size:290 final size:289
Alignment explanation
Indices: 105224176--105225097 Score: 1693
Period size: 289 Copynumber: 3.2 Consensus size: 289
105224166 ACAGATCTGG
* * *
105224176 CTGAAGCAGATCTAAGATGATTCGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACAT-GTCA
1 CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGT-A
105224240 GATTTGACTCTCAGATGTTCTCAAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAA
65 GATTTGACTCTCAGATGTTCTCAAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAA
*
105224305 CAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
130 CAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTG
105224370 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
195 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
105224435 CATAGCAGATCTAACCTTCAGATGTTTATA
260 CATAGCAGATCTAACCTTCAGATGTTTATA
* **
105224465 CTGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAACAAATCGAGGACATACCAG
1 CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGTAG
105224530 ATTTGACTCTCAGATGTTCTCAAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAC
66 ATTTGACTCTCAGATGTTCTCAAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAC
105224595 AAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGG
131 AAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGG
*
105224660 CATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACAC
196 CATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACAC
105224725 ATAGCAGATCTAACCTTCAGATGTTTATA
261 ATAGCAGATCTAACCTTCAGATGTTTATA
105224754 CTGAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGTA
1 CTG-AAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGTA
*
105224819 GATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAA
65 GATTTGACTCTCAGATGTTCTCAAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAA
* *
105224884 CAAATTGAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAATTCTAAGATGATTTG
130 CAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTG
*
105224949 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACA
195 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
105225014 CATAGCAGATCTAACCTTCAGATGTTTATA
260 CATAGCAGATCTAACCTTCAGATGTTTATA
* *
105225044 CTGAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGA
1 CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGA
105225098 AACCATAGCT
Statistics
Matches: 613, Mismatches: 18, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
289 332 0.54
290 281 0.46
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (289 bp):
CTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGTAG
ATTTGACTCTCAGATGTTCTCAAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAC
AAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGG
CATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACAC
ATAGCAGATCTAACCTTCAGATGTTTATA
Found at i:105225136 original size:206 final size:206
Alignment explanation
Indices: 105224847--105225303 Score: 815
Period size: 206 Copynumber: 2.2 Consensus size: 206
105224837 TCTCAAACAA
*
105224847 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATTGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
*
105224912 TCACGTGTTTAAGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
66 TCACGTGTTTAAGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
*
105224977 GAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
131 AAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
105225042 TACTGAAGCAG
196 TACTGAAGCAG
105225053 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
*
105225118 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
66 TCACGTGTTTAAGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
* * ** *
105225183 AAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGATGTTTA
131 AAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
105225248 TACTGAAGCAG
196 TACTGAAGCAG
* *
105225259 ATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGA
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGA
105225304 GGACATAGCA
Statistics
Matches: 240, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
206 240 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (206 bp):
ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
TCACGTGTTTAAGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
AAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
TACTGAAGCAG
Found at i:105225489 original size:495 final size:496
Alignment explanation
Indices: 105224551--105225592 Score: 1915
Period size: 495 Copynumber: 2.1 Consensus size: 496
105224541 AGATGTTCTC
*
105224551 AAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATT
1 AAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATT
*
105224616 TGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
66 TGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAA
*
105224681 CAAATCGAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGA
131 CAAATCAAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGA
105224746 TGTTTATACTGAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGG
196 TGTTTATACTGAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGG
* *
105224811 ACATAGTAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTGTTT
261 ACATAGCAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTCGTATCCTTGTGTTT
* *
105224876 ACAAGGAACAAATTGAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAATTCTAAG
326 ACAAGGAACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAAGTCTAAG
*
105224941 ATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAG
391 ATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGACATCTCCATATTCGACGGAG
105225006 GGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTG
456 GGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTG
105225047 AAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATT
1 AAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATT
105225112 TGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAA
66 TGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAA
* * ** *
105225177 CAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGA
131 CAAATCAAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGA
105225242 TGTTTATACTG-AAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGG
196 TGTTTATACTGAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGG
105225306 ACATAGCAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTCGTATCCTTGTGTTT
261 ACATAGCAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTCGTATCCTTGTGTTT
*
105225371 ACAAGGAACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAAGTCTAAG
326 ACAAGGAACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAAGTCTAAG
*
105225436 ATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGACGTCTCCATATTCGACGGAG
391 ATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGACATCTCCATATTCGACGGAG
105225501 GGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTG
456 GGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTG
* * *
105225542 AAACAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAACAAATCGA
1 AAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGA
105225593 GGACATACCA
Statistics
Matches: 528, Mismatches: 18, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
495 330 0.62
496 198 0.38
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (496 bp):
AAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATT
TGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAA
CAAATCAAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGA
TGTTTATACTGAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGG
ACATAGCAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTCGTATCCTTGTGTTT
ACAAGGAACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAAGTCTAAG
ATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGACATCTCCATATTCGACGGAG
GGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTG
Found at i:105225838 original size:785 final size:783
Alignment explanation
Indices: 105224262--105226666 Score: 3555
Period size: 785 Copynumber: 3.1 Consensus size: 783
105224252 AGATGTTCTC
* *
105224262 AAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATT
1 AAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATT
*
105224327 TGGTTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
66 TGGTTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCT-TATTGTCAGAGAA
* * ** *
105224392 CAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGA
130 CAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGA
*
105224457 TGTTTATACTGAAGCAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAACAAATCGAGGA
195 TGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGA
*
105224522 CATACCAGATTTGACTCTCAGATGTTCTCAAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTA
260 CATAGCAGATTTGACTCTCAGATGTTCTCAAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTA
105224587 CAAGGAACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGA
325 CAAGGAACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGA
*
105224652 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGCCTCCATATTCGACGGAGG
390 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGG
105224717 GCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAAGCAGATCCAAGATGATTTGGCA
455 GCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAA-CAGATCCAAGATGATTTGGCA
*
105224782 TTCTTGTGTTTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGATGTTCTCAAACAA
519 TTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAACAA
*
105224847 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATTGAAACCATAGCTGATTTGGTTT
584 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
*
105224912 TCACGTGTTTAAGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
649 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
105224977 GAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
714 GAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
105225042 TACTG
779 TACTG
*
105225047 AAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATT
1 AAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATT
*
105225112 TGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAA
66 TGGTTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCT-TATTGTCAGAGAA
105225177 CAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGA
130 CAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGA
105225242 TGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGA
195 TGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGA
* *
105225307 CATAGCAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTCGTATCCTTGTGTTTA
260 CATAGCAGATTTGACTCTCAGATGTTCTCAAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTA
*
105225372 CAAGGAACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAAGTCTAAGA
325 CAAGGAACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGA
*
105225437 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGACGTCTCCATATTCGACGGAGG
390 TGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGG
*
105225502 GCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGAAT
455 GCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGCAT
* **
105225567 TCTTGTGTTTACAAGGAACAAATCGAGGACATACCAGATTTGACTCTCAGATGTTCTCAAGTAAA
520 TCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAACAAA
*
105225632 TCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAATAAATCGAAACCATAGCTGATTTGGTTTT
585 TCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTTT
105225697 CACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCG
650 CACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCG
**
105225762 AAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTAT
715 AAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTAT
105225827 ACTG
780 ACTG
* *
105225831 AAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGA-CATAG-TAG
1 -AAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGA-AACCATAGCT-G
** * * * * * * *
105225894 ATTTGACTCTCA-GATG-TT-C--TCAAACAAATCCAAGATGATTTGGTATC-CTTGTGTTTACA
63 ATTTGGTTTTCACG-TGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTTAT-TGT-CA
*** * *** * * *** * * *
105225953 -AGGAACAAATCGAAACCATAGCTGAT-TTGGTTTTC-AC-GTGTTTAAG-TTGAAGCA-ATTCT
125 GA-GAACAAATC-AAAGTTTGGC-G-TCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATT-T
** ** * * * * * * * * * *
105226012 AAGATGATTTGGCATCTCTGTATTGTCAG-AGA-ACAA-ATCGAAGTTTGGCGTCTCCATAT-TC
185 -A-A-CCTTCAG-ATGTTTATACTG-AAGCAGATCCAAGAT-G-A-TTTGGCAT-T-CTTGTGTT
* * * * * * * *
105226073 GACGGAGG-GC--A--GA-CACATAGCAGATCTAAC-CTTCAGATGTTTATACTGAAGCAGATCC
240 TAC-AAGGAACAAATCGAGGACATAGCAGATTTGACTC-TCAGATG--T-T-CTCAAGCAAATCC
105226131 AAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTTTCAC
299 AAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTTTCAC
* *
105226196 GTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCAAAG
364 GTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
* ** *
105226261 TTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGATGTTTATACT
429 TTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACT
* *
105226326 GAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATTGAGGACATAGCAGAT
494 GAAACAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGAT
*
105226391 TTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTTTGTTTACAAGGAACAA
559 TTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAA
* *
105226456 ATCAAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCA
624 ATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCA
* *
105226521 TCTCTGTATTGTCAAAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACGT
689 TCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACAT
105226586 AGCAGATCTAACCTTCAGATGTTTATACTG
754 AGCAGATCTAACCTTCAGATGTTTATACTG
* *
105226616 AAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAAAAATCGA
1 AAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGA
105226667 GGACATAGCA
Statistics
Matches: 1493, Mismatches: 100, Indels: 55
0.91 0.06 0.03
Matches are distributed among these distances:
779 5 0.00
780 13 0.01
781 60 0.04
782 13 0.01
783 15 0.01
784 345 0.23
785 1030 0.69
786 6 0.00
787 6 0.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (783 bp):
AAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATT
TGGTTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTTATTGTCAGAGAAC
AAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGAT
GTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGAC
ATAGCAGATTTGACTCTCAGATGTTCTCAAGCAAATCCAAGATGATTTGGTATCCTTGTGTTTAC
AAGGAACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAATTCTAAGAT
GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGG
CAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGCATT
CTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAACAAAT
CCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTTTC
ACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGA
AGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTATA
CTG
Found at i:105226004 original size:290 final size:289
Alignment explanation
Indices: 105225053--105226171 Score: 2049
Period size: 289 Copynumber: 3.9 Consensus size: 289
105225043 ACTGAAGCAG
105225053 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
*
105225118 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
66 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
* * ** *
105225183 AAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGATGTTTA
131 GAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
105225248 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
196 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
105225313 AGATTTGACTCTCAGATGTTCTCAAACAA
261 AGATTTGACTCTCAGATGTTCTCAAACAA
*
105225342 ATCCAAGATGATTTCGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
*
105225407 TCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
66 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
*
105225472 GAAGTTTGACGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
131 GAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
* * *
105225537 TACTGAAACAGATCCAAGATGATTTGGAATTCTTGTGTTTACAAGGAACAAATCGAGGACATACC
196 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
**
105225602 AGATTTGACTCTCAGATGTTCTCAAGTAA
261 AGATTTGACTCTCAGATGTTCTCAAACAA
*
105225631 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAATAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
105225696 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
66 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
*
105225761 GAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
131 GAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
105225826 TACTGAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAG
196 TACTG-AAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAG
*
105225891 TAGATTTGACTCTCAGATGTTCTCAAACAA
260 CAGATTTGACTCTCAGATGTTCTCAAACAA
105225921 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
*
105225986 TCACGTGTTTAAGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
66 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
105226051 GAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
131 GAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
* *
105226116 TACTGAAGCAGATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGA
196 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGA
105226172 AACCATAGCT
Statistics
Matches: 799, Mismatches: 30, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
289 519 0.65
290 280 0.35
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (289 bp):
ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
GAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
AGATTTGACTCTCAGATGTTCTCAAACAA
Found at i:105226153 original size:579 final size:578
Alignment explanation
Indices: 105225053--105226171 Score: 2085
Period size: 579 Copynumber: 1.9 Consensus size: 578
105225043 ACTGAAGCAG
105225053 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
105225118 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
66 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
* * ** *
105225183 AAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGATGTTTA
131 AAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
105225248 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
196 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
105225313 AGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTCGTATCCTTGTGTTTACAAGGA
261 AGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTCGTATCCTTGTGTTTACAAGGA
*
105225378 ACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTT
326 ACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAAGTCTAAGATGATTT
105225443 GGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGACGTCTCCATATTCGACGGAGGGCAGAC
391 GGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGACGTCTCCATATTCGACGGAGGGCAGAC
*
105225508 ACATAGCAGATCTAACCTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGAATTCTTGT
456 ACATAGCAGATCTAACCTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGAATCCTTGT
105225573 GTTTACAAGGAACAAATCGAGGACATACCAGATTTGACTCTCAGATGTTCTCAAGTAA
521 GTTTACAAGGAACAAATCGAGGACATACCAGATTTGACTCTCAGATGTTCTCAAGTAA
*
105225631 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAATAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
*
105225696 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
66 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
*
105225761 GAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
131 AAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
105225826 TACTGAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAG
196 TACTG-AAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAG
* *
105225891 TAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGG
260 CAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTCGTATCCTTGTGTTTACAAGG
*
105225956 AACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAATTCTAAGATGATT
325 AACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAAGTCTAAGATGATT
*
105226021 TGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGA
390 TGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGACGTCTCCATATTCGACGGAGGGCAGA
* *
105226086 CACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATCCTTG
455 CACATAGCAGATCTAACCTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGAATCCTTG
105226151 TGTTTACAAGGAACAAATCGA
520 TGTTTACAAGGAACAAATCGA
105226172 AACCATAGCT
Statistics
Matches: 524, Mismatches: 16, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
578 192 0.37
579 332 0.63
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (578 bp):
ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
AAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
AGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTCGTATCCTTGTGTTTACAAGGA
ACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAAGTCTAAGATGATTT
GGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGACGTCTCCATATTCGACGGAGGGCAGAC
ACATAGCAGATCTAACCTTCAGATGTTTATACTGAAACAGATCCAAGATGATTTGGAATCCTTGT
GTTTACAAGGAACAAATCGAGGACATACCAGATTTGACTCTCAGATGTTCTCAAGTAA
Found at i:105226275 original size:206 final size:206
Alignment explanation
Indices: 105225921--105226374 Score: 827
Period size: 206 Copynumber: 2.2 Consensus size: 206
105225911 TCTCAAACAA
105225921 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
*
105225986 TCACGTGTTTAAGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
66 TCACGTGTTTAAGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
*
105226051 GAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
131 AAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
105226116 TACTGAAGCAG
196 TACTGAAGCAG
105226127 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
*
105226192 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
66 TCACGTGTTTAAGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
* ** *
105226257 AAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGATGTTTA
131 AAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
105226322 TACTGAAGCAG
196 TACTGAAGCAG
* *
105226333 ATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAAT
105226375 TGAGGACATA
Statistics
Matches: 239, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
206 239 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (206 bp):
ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
TCACGTGTTTAAGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
AAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
TACTGAAGCAG
Found at i:105226422 original size:289 final size:289
Alignment explanation
Indices: 105226127--105227389 Score: 2161
Period size: 289 Copynumber: 4.4 Consensus size: 289
105226117 ACTGAAGCAG
105226127 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
* * *
105226192 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
66 TCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGACAGAGAACAAATC
* * * *
105226257 AAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGATGTTTA
131 AAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACGTAGCAGATCTAACCTTCAGATGTTTA
*
105226322 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATTGAGGACATAGC
196 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
105226387 AGATTTGACTCTCAGATGTTCTCAAACAA
261 AGATTTGACTCTCAGATGTTCTCAAACAA
* *
105226416 ATCCAAGATGATTTGGTATCCTTTTGTTTACAAGGAACAAATCAAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
* *
105226481 TCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAAAGAACAAATC
66 TCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGACAGAGAACAAATC
*
105226546 GAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACGTAGCAGATCTAACCTTCAGATGTTTA
131 AAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACGTAGCAGATCTAACCTTCAGATGTTTA
*
105226611 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAAAAATCGAGGACATAGC
196 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
105226676 AGATTTGACTCTCAGATGTTCTCAAACAA
261 AGATTTGACTCTCAGATGTTCTCAAACAA
105226705 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
*
105226770 TCATGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGACAGAGAACAAATC
66 TCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGACAGAGAACAAATC
*
105226835 GAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACGTAGCAGATCTAACCTTCAGATGTTTA
131 AAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACGTAGCAGATCTAACCTTCAGATGTTTA
* * *
105226900 TACTGAAGCAGATCCAAGATGATTTGACATTCTTGTGTTTACAAGGAACAAATTGAGGACATAGT
196 TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
105226965 AGATTTGACTCTCAGATGTTCTCAAACAA
261 AGATTTGACTCTCAGATGTTCTCAAACAA
105226994 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
105227059 TCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGACAGAGAACAAAT-
66 TCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGACAGAGAACAAATC
* * * *
105227123 AGAAGTTTGGCGTCTCTATATTCGACTGAGGGCAGACACGTAGCAGATCTAGCCTTCAGATGTTT
131 A-AAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACGTAGCAGATCTAACCTTCAGATGTTT
*
105227188 ATACTGAAGCAGATCCAAGATGTTTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAG
195 ATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAG
105227253 CAGATTTGACTCTCAGATGTTCTCAAACAA
260 CAGATTTGACTCTCAGATGTTCTCAAACAA
* * ** ** **
105227283 ATCCAAGATGAGTTGGTATCCTTGTGCTTACAAGGAGTAAATCGAAGGCATAATTGATTTGGCTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGG-TT
* * * * *
105227348 TT-GCGTGCTTACGCTGAAGCAAATCTAAGATGATTTTGCATC
65 TTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATC
105227390 CCTGCATTAG
Statistics
Matches: 928, Mismatches: 44, Indels: 4
0.95 0.05 0.00
Matches are distributed among these distances:
289 924 1.00
290 4 0.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (289 bp):
ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
TCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGACAGAGAACAAATC
AAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACGTAGCAGATCTAACCTTCAGATGTTTA
TACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGC
AGATTTGACTCTCAGATGTTCTCAAACAA
Found at i:105226563 original size:495 final size:496
Alignment explanation
Indices: 105225631--105226666 Score: 1885
Period size: 495 Copynumber: 2.1 Consensus size: 496
105225621 TCTCAAGTAA
*
105225631 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAATAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAAAAATCGAAACCATAGCTGATTTGGTTT
*
105225696 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
66 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
*
105225761 GAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
131 AAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
105225826 TACTGAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAG
196 TACTGAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAG
*
105225891 TAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGG
261 CAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGG
* *
105225956 AACAAATCGAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAATTCTAAGATGATT
326 AACAAATCAAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAAGTCTAAGATGATT
* *
105226021 TGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGA
391 TGGCATCTCTGTATTGTCAAAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGA
105226086 CACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAG
456 CACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAG
*
105226127 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAACCATAGCTGATTTGGTTT
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAAAAATCGAAACCATAGCTGATTTGGTTT
105226192 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
66 TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
* * ** *
105226257 AAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGGCATGTAGCAGATTTAACCTTCAGATGTTTA
131 AAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
*
105226322 TACTG-AAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATTGAGGACATAG
196 TACTGAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAG
*
105226386 CAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTTTGTTTACAAGG
261 CAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGG
*
105226451 AACAAATCAAAACCATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATT
326 AACAAATCAAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAAGTCTAAGATGATT
105226516 TGGCATCTCTGTATTGTCAAAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGA
391 TGGCATCTCTGTATTGTCAAAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGA
*
105226581 CACGTAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAG
456 CACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAG
* *
105226622 ATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAAAAATCGA
1 ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAAAAATCGA
105226667 GGACATAGCA
Statistics
Matches: 520, Mismatches: 20, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
495 328 0.63
496 192 0.37
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (496 bp):
ATCCAAGATGATTTGGTATCCTTGTGTTTACAAGGAAAAAATCGAAACCATAGCTGATTTGGTTT
TCACGTGTTTACGTTGAAGCAATTCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATC
AAAGTTTGGCGCCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGTTTA
TACTGAAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAGGACATAG
CAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATCCTTGTGTTTACAAGG
AACAAATCAAAACCATAGCTGATTTGGTTTTCACGTGTTTAAGTTGAAGCAAGTCTAAGATGATT
TGGCATCTCTGTATTGTCAAAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGA
CACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAG
Found at i:105229118 original size:24 final size:25
Alignment explanation
Indices: 105229085--105229169 Score: 90
Period size: 24 Copynumber: 3.5 Consensus size: 25
105229075 TGCATTTTAC
*
105229085 TATATGTTATATGTATTTTCAT-TA-
1 TATATATTATAT-TATTTTCATATAT
*
105229109 TATATATTAT-TTATTTTTATATAT
1 TATATATTATATTATTTTCATATAT
105229133 TATATATTATATTA--TTCATATTAT
1 TATATATTATATTATTTTCATA-TAT
*
105229157 TATATATTTTATT
1 TATATATTATATT
105229170 TATAAAGTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
22 8 0.15
23 8 0.15
24 34 0.64
25 3 0.06
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
TATATATTATATTATTTTCATATAT
Found at i:105229128 original size:19 final size:19
Alignment explanation
Indices: 105229106--105229166 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
105229096 TGTATTTTCA
105229106 TTATATATATTATTTATTT
1 TTATATATATTATTTATTT
105229125 TTATATATTATATATTATATTAT
1 TTATATA-TAT-TATT-TATT-T
* *
105229148 TCATAT-TATTATATATTT
1 TTATATATATTATTTATTT
105229166 T
1 T
105229167 ATTTATAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
18 2 0.06
19 11 0.31
20 6 0.17
21 7 0.19
22 4 0.11
23 6 0.17
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATATATATTATTTATTT
Found at i:105229133 original size:17 final size:17
Alignment explanation
Indices: 105229109--105229168 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 17
105229099 ATTTTCATTA
105229109 TATATATTATTTATTTT
1 TATATATTATTTATTTT
*
105229126 TATATATTATATATTATAT
1 TATATATTATTTATT-T-T
105229145 TATTCATATTATTATATATTT
1 TA-T-ATATTATT-TAT-TTT
105229166 TAT
1 TAT
105229169 TTATAAAGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
17 14 0.40
18 1 0.03
19 3 0.09
20 2 0.06
21 10 0.29
22 4 0.11
23 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
TATATATTATTTATTTT
Found at i:105229302 original size:14 final size:14
Alignment explanation
Indices: 105229283--105229309 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
105229273 TATATTATAT
105229283 ATATATTTTATTAC
1 ATATATTTTATTAC
105229297 ATATATTTTATTA
1 ATATATTTTATTA
105229310 TTATATGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (14 bp):
ATATATTTTATTAC
Found at i:105229314 original size:38 final size:33
Alignment explanation
Indices: 105229275--105229341 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
105229265 TTTCTTCTTA
* *
105229275 TATTATAT-ATATATTTTATTACATATATTTTAT
1 TATTATATGATTTATATTATTACATAT-TTTTAT
105229308 TATTATATGATTTATATTATTACATATTTTTAT
1 TATTATATGATTTATATTATTACATATTTTTAT
105229341 T
1 T
105229342 TGTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 15 0.48
34 16 0.52
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.61
Consensus pattern (33 bp):
TATTATATGATTTATATTATTACATATTTTTAT
Found at i:105229336 original size:16 final size:16
Alignment explanation
Indices: 105229275--105229341 Score: 62
Period size: 17 Copynumber: 4.1 Consensus size: 16
105229265 TTTCTTCTTA
* * *
105229275 TATTATATATATATTT
1 TATTACATATTTATAT
*
105229291 TATTACATATATTTTAT
1 TATTACATAT-TTATAT
*
105229308 TATTATATGATTTATAT
1 TATTACAT-ATTTATAT
*
105229325 TATTACATATTTTTAT
1 TATTACATATTTATAT
105229341 T
1 T
105229342 TGTAAATTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
16 17 0.41
17 22 0.54
18 2 0.05
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.61
Consensus pattern (16 bp):
TATTACATATTTATAT
Found at i:105230204 original size:18 final size:18
Alignment explanation
Indices: 105230181--105230216 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
105230171 ACCCAATAAG
105230181 TTAGGGCACTACTTTTCT
1 TTAGGGCACTACTTTTCT
105230199 TTAGGGCACTACTTTTCT
1 TTAGGGCACTACTTTTCT
105230217 CGAAGCTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (18 bp):
TTAGGGCACTACTTTTCT
Found at i:105230906 original size:17 final size:17
Alignment explanation
Indices: 105230884--105230950 Score: 68
Period size: 17 Copynumber: 3.9 Consensus size: 17
105230874 ATAATAAATT
105230884 TAAAATATAATATATAA
1 TAAAATATAATATATAA
*
105230901 TAAAATAT-ATAT-TTA
1 TAAAATATAATATATAA
105230916 TAAGAATAATAATTATATAA
1 TAA-AAT-ATAA-TATATAA
*
105230936 -AAAATATAAAATATA
1 TAAAATATAATATATA
105230951 TTGGTTTAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
15 5 0.12
16 12 0.29
17 14 0.33
18 4 0.10
19 5 0.12
20 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (17 bp):
TAAAATATAATATATAA
Found at i:105231481 original size:17 final size:18
Alignment explanation
Indices: 105231428--105231525 Score: 139
Period size: 18 Copynumber: 5.5 Consensus size: 18
105231418 AATCATATCT
105231428 TCTAAGATTGTATATCATA
1 TCTAAGATTG-ATATCATA
105231447 TCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATA
105231465 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
*
105231482 TCTAAGATTGAAATCATA
1 TCTAAGATTGATATCATA
*
105231500 TTTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
105231517 TCTAAGATT
1 TCTAAGATT
105231526 ACATATCATT
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
17 30 0.42
18 31 0.43
19 11 0.15
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (18 bp):
TCTAAGATTGATATCATA
Found at i:105231486 original size:35 final size:35
Alignment explanation
Indices: 105231428--105231534 Score: 160
Period size: 35 Copynumber: 3.0 Consensus size: 35
105231418 AATCATATCT
105231428 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
*
105231465 TCTAAGATTGTATCATATCTAAGATTGAAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
105231500 TTTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
105231535 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
35 50 0.77
36 5 0.08
37 10 0.15
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:105232147 original size:83 final size:83
Alignment explanation
Indices: 105231922--105232271 Score: 574
Period size: 83 Copynumber: 4.2 Consensus size: 83
105231912 GATTTGTAAA
* * * *
105231922 GATGTCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGACTT
1 GATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGATTT
105231987 GTTCCTTGTAAGCACAAG
66 GTTCCTTGTAAGCACAAG
* * *
105232005 GATGCCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAAAGTCATGTCTGCAGGGTCCTCGATT
1 GATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGATT
*
105232070 TGTTCATTGTAAGCACAAG
65 TGTTCCTTGTAAGCACAAG
* *
105232089 GATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTACAATGTCCTCGATTT
1 GATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGATTT
105232154 GTTCCTTGTAAGCACAAG
66 GTTCCTTGTAAGCACAAG
* * *
105232172 GATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCGATGTCTTCGATTT
1 GATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGATTT
105232237 GTTCCTTGTAAGCACAAG
66 GTTCCTTGTAAGCACAAG
105232255 GATGCCAAACCATCTTG
1 GATGCCAAACCATCTTG
105232272 GATCTGCTTC
Statistics
Matches: 249, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
83 173 0.69
84 76 0.31
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (83 bp):
GATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGATTT
GTTCCTTGTAAGCACAAG
Found at i:105232672 original size:119 final size:119
Alignment explanation
Indices: 105232195--105232669 Score: 770
Period size: 119 Copynumber: 4.0 Consensus size: 119
105232185 CTTGAGTCTG
* * * * * * * *
105232195 TTTGAGAACATTTGAGAGTCATATCTGCGATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
105232260 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
105232314 ATTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
105232379 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
105232433 TTTGAGAACGTTTAAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
105232498 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* ** *
105232552 TTTGAGAACGTCTGAGAGTCAAATCTATTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGT
1 TTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* * *
105232617 CAAATCATCTTGGATCTACTTCAGTTTAAACATATGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
105232670 CTTCGATCTG
Statistics
Matches: 333, Mismatches: 23, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 333 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:105232709 original size:44 final size:44
Alignment explanation
Indices: 105232661--105232840 Score: 186
Period size: 44 Copynumber: 4.1 Consensus size: 44
105232651 TGAAGGTTAG
105232661 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
105232705 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * * *
105232747 ATGCTGAAATCTTCAATCTGCTTCGCTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAA
* * * *
105232793 ATATACTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
105232837 ATCT
1 ATCT
105232841 TGTTTCTTTG
Statistics
Matches: 107, Mismatches: 23, Indels: 12
0.75 0.16 0.08
Matches are distributed among these distances:
42 2 0.02
43 13 0.12
44 79 0.74
45 11 0.10
46 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:105236380 original size:15 final size:15
Alignment explanation
Indices: 105236350--105236380 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
105236340 ATCTCGACTT
105236350 AATTTCATTTAGAAA
1 AATTTCATTTAGAAA
105236365 AATTT-ATTTAGAAA
1 AATTTCATTTAGAAA
105236379 AA
1 AA
105236381 GAATATCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTTCATTTAGAAA
Found at i:105239505 original size:17 final size:16
Alignment explanation
Indices: 105239483--105239538 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
105239473 ATAATAAATT
105239483 TAAAATATAATATATAA
1 TAAAATATAAT-TATAA
*
105239500 TAAAATATATTTATAA
1 TAAAATATAATTATAA
* *
105239516 GAATA-ATAATTAT-A
1 TAAAATATAATTATAA
105239530 TAAAATATA
1 TAAAATATA
105239539 TAAAATATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
14 4 0.12
15 10 0.31
16 8 0.25
17 10 0.31
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
TAAAATATAATTATAA
Found at i:105239571 original size:39 final size:40
Alignment explanation
Indices: 105239487--105239576 Score: 105
Period size: 39 Copynumber: 2.3 Consensus size: 40
105239477 TAAATTTAAA
* *
105239487 ATATAATATATAATAAAATATATTTATAAGAATAATAATT
1 ATATAAAATATAATAAAATATATTTATAAGAAAAATAATT
*
105239527 ATATAAAATAT-ATAAAATATATTGGT-TTAGAAAAATAA-T
1 ATATAAAATATAATAAAATATATT--TATAAGAAAAATAATT
*
105239566 GTATAAAATAT
1 ATATAAAATAT
105239577 CAAATATGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
39 23 0.52
40 20 0.45
41 1 0.02
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.38
Consensus pattern (40 bp):
ATATAAAATATAATAAAATATATTTATAAGAAAAATAATT
Found at i:105240059 original size:18 final size:17
Alignment explanation
Indices: 105240023--105240155 Score: 176
Period size: 18 Copynumber: 7.5 Consensus size: 17
105240013 AATCATATCT
105240023 TCTAAGATTGTATATCATA
1 TCTAAGATTG-A-ATCATA
105240042 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
105240060 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
105240077 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
105240095 TCTAATATTGTATCATA
1 TCTAAGATTGAATCATA
105240112 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
105240130 TTTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
105240147 TCTAAGATT
1 TCTAAGATT
105240156 ACATATCATT
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
17 45 0.44
18 46 0.45
19 11 0.11
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.40
Consensus pattern (17 bp):
TCTAAGATTGAATCATA
Found at i:105240081 original size:35 final size:35
Alignment explanation
Indices: 105240023--105240164 Score: 230
Period size: 35 Copynumber: 4.0 Consensus size: 35
105240013 AATCATATCT
105240023 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
105240060 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
105240095 TCTAATATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
105240130 TTTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
105240165 TGAAGATTAT
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
35 85 0.85
36 5 0.05
37 10 0.10
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.39
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:105245118 original size:21 final size:21
Alignment explanation
Indices: 105245093--105245141 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
105245083 TATATATCCG
* *
105245093 TAATATATAAAAACGTATATA
1 TAATATATAAAAACATATACA
*
105245114 TAATAT-T-AAAACATTTACA
1 TAATATATAAAAACATATACA
105245133 TAATATATA
1 TAATATATA
105245142 CACACATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 15 0.65
20 2 0.09
21 6 0.26
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (21 bp):
TAATATATAAAAACATATACA
Found at i:105245526 original size:26 final size:25
Alignment explanation
Indices: 105245484--105245540 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
105245474 AAACATGCAT
* **
105245484 ACAATATTATAAAATATTTATAACTA
1 ACAAAATTATAAAATATACATAAC-A
105245510 ACAAAATTA-AAATATATACATAACA
1 ACAAAATTATAAA-ATATACATAACA
105245535 ACAAAA
1 ACAAAA
105245541 GTATGATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 10 0.37
26 17 0.63
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (25 bp):
ACAAAATTATAAAATATACATAACA
Found at i:105245549 original size:25 final size:23
Alignment explanation
Indices: 105245493--105245557 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 23
105245483 TACAATATTA
* *
105245493 TAAAATATTTATAACTAACAAAAT
1 TAAAATATTAATAAC-AACAAAAG
105245517 TAAAATATATACATAACAACAAAAG
1 TAAAATAT-TA-ATAACAACAAAAG
**
105245542 TATGATATTAATAACA
1 TAAAATATTAATAACA
105245558 TATATATATA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 6 0.17
24 10 0.29
25 14 0.40
26 5 0.14
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.29
Consensus pattern (23 bp):
TAAAATATTAATAACAACAAAAG
Found at i:105245825 original size:25 final size:26
Alignment explanation
Indices: 105245778--105245831 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
105245768 TAATAAGAGG
*
105245778 AATAATAAAAACAATAATAATATAAA
1 AATAATAAAAACAAAAATAATATAAA
* * *
105245804 AATAA-AATAACAAAAATGATATGAA
1 AATAATAAAAACAAAAATAATATAAA
105245829 AAT
1 AAT
105245832 GAACTTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (26 bp):
AATAATAAAAACAAAAATAATATAAA
Found at i:105247863 original size:90 final size:87
Alignment explanation
Indices: 105247584--105247892 Score: 308
Period size: 90 Copynumber: 3.5 Consensus size: 87
105247574 GATCCTGAAT
** * * * * * *
105247584 TCAACTCATTTCTCGCAATATGAATTGACTCTTT--AAAAACAGACATTAAGAACAGAAATTGAA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAATATAAATTAAAAACAGAAATTGAA
* * * *
105247647 AATAGCTCAGCACGTGAGCC-AAGGC
65 AATACCTCA--ACCTG-TCCTGAGGC
* * * *
105247672 TCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAAACATGAATTAAAAGCAGAAATTGAGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAATATAAATTAAAAACAGAAATTGAAA
* * *
105247735 ATACCTCAGCGTGTCTTGAGGC
66 ATACCTCAACCTGTCCTGAGGC
105247757 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAATATAAATTGAAAAAAACAGAAATTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAATATAAATT---AAAAACAGAAATTG
105247822 AAAATACCTCAACCT-TCCCTGAGGC
63 AAAATACCTCAACCTGT-CCTGAGGC
*
105247847 TCAACTCACCTCTCGCAATATGAATTGATTTTTGATAAAAAT-TAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAAAATATAAA
105247893 AGGCTCAACT
Statistics
Matches: 189, Mismatches: 23, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
84 1 0.01
85 42 0.22
87 44 0.23
88 25 0.13
89 1 0.01
90 70 0.37
91 6 0.03
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.28
Consensus pattern (87 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAATATAAATTAAAAACAGAAATTGAAA
ATACCTCAACCTGTCCTGAGGC
Found at i:105250859 original size:40 final size:35
Alignment explanation
Indices: 105250777--105250942 Score: 197
Period size: 35 Copynumber: 4.6 Consensus size: 35
105250767 CCTCATTGAA
* * ***
105250777 ATACCATACCTACATTTTACAACTCGGTATGGGCA
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
* **
105250812 ATGCCATACCTACATTTCTTAACTCAGTATGGATTTG
1 ATACCATACCTACATTTCACAACTCAGTATGGA--TG
* *
105250849 ATAATACCATACATACATATCACAACTCAGTATGGATG
1 ---ATACCATACCTACATTTCACAACTCAGTATGGATG
105250887 ATACCATACCTACATTTCACAACTCAGTATGGATG
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
105250922 ATACCATACCTACATTTCACA
1 ATACCATACCTACATTTCACA
105250943 CTTTGCCATG
Statistics
Matches: 111, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
35 81 0.73
38 2 0.02
40 28 0.25
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:105250866 original size:75 final size:74
Alignment explanation
Indices: 105250772--105250920 Score: 199
Period size: 75 Copynumber: 2.0 Consensus size: 74
105250762 GTTTTCCTCA
* * * * * * **
105250772 TTGAAATACCATACCTACATTTTACAACTCGGTATGGGCAATGCCATACCTACATTTCTTAACTC
1 TTGAAATACCATACATACATATCACAACTCAGTATGGACAATACCATACCTACATTTCACAACTC
105250837 AGTATGGAT
66 AGTATGGAT
**
105250846 TTGATAATACCATACATACATATCACAACTCAGTATGGATGATACCATACCTACATTTCACAACT
1 TTGA-AATACCATACATACATATCACAACTCAGTATGGACAATACCATACCTACATTTCACAACT
105250911 CAGTATGGAT
65 CAGTATGGAT
105250921 GATACCATAC
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
74 4 0.06
75 60 0.94
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (74 bp):
TTGAAATACCATACATACATATCACAACTCAGTATGGACAATACCATACCTACATTTCACAACTC
AGTATGGAT
Found at i:105266524 original size:12 final size:12
Alignment explanation
Indices: 105266507--105266540 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
105266497 CGGCCCGCCC
105266507 ATATTAATTTTT
1 ATATTAATTTTT
*
105266519 ATATTATTTTTT
1 ATATTAATTTTT
105266531 ATA-TAATTTT
1 ATATTAATTTT
105266541 AAACAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:105266700 original size:30 final size:30
Alignment explanation
Indices: 105266664--105266726 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
105266654 ACTTAACAAG
105266664 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
105266694 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
105266724 CAA
1 CAA
105266727 TAGAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:105271128 original size:11 final size:12
Alignment explanation
Indices: 105271101--105271127 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
105271091 CTGGTTACTA
105271101 TTTTGTTTTTTT
1 TTTTGTTTTTTT
105271113 TTTTGTTTTTTT
1 TTTTGTTTTTTT
105271125 TTT
1 TTT
105271128 GAGGGGGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (12 bp):
TTTTGTTTTTTT
Found at i:105280227 original size:10 final size:10
Alignment explanation
Indices: 105280212--105280239 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
105280202 TTAATGTCAT
105280212 AAAAAATTGA
1 AAAAAATTGA
105280222 AAAAAATTGA
1 AAAAAATTGA
105280232 AAAAAATT
1 AAAAAATT
105280240 CAAATCTTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (10 bp):
AAAAAATTGA
Found at i:105283848 original size:27 final size:28
Alignment explanation
Indices: 105283795--105283848 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
105283785 CACATAGACC
*
105283795 GCCACAAAGGCGTTTCCTATCAGAGATA
1 GCCACAAAGGCGTTTCCTATCAAAGATA
* *
105283823 GCCATAAAGGC-TTTCTTATCAAAGAT
1 GCCACAAAGGCGTTTCCTATCAAAGAT
105283849 TCACCGTAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (28 bp):
GCCACAAAGGCGTTTCCTATCAAAGATA
Found at i:105284003 original size:56 final size:56
Alignment explanation
Indices: 105283818--105284009 Score: 138
Period size: 56 Copynumber: 3.4 Consensus size: 56
105283808 TTCCTATCAG
* * * * * * * *
105283818 AGATAGCCATAAAGGCTTT-CTTATCAAAGATTCACCGTAGAGGCATTCTTAAACAT
1 AGATAGTCACAAAGGCTTTCCTT-TCAGAGACTCACCATAAAGGCATTCTTTAACAA
* * * * ** * * *
105283874 AGATAGCCACAAATGTTTTCCTTTCAGAAACT--CTTTAAACGACATCCTTTAATAA
1 AGATAGTCACAAAGGCTTTCCTTTCAGAGACTCACCATAAA-GGCATTCTTTAACAA
* * * *
105283929 ATATAGTCAAAAAAGCTTTCCTTTCAGAGACTCACCATAAAGGCATTCTTTAACAG
1 AGATAGTCACAAAGGCTTTCCTTTCAGAGACTCACCATAAAGGCATTCTTTAACAA
*
105283985 AGATAGTTACAAAGGCTTTTCCTTT
1 AGATAGTCACAAAGGC-TTTCCTTT
105284010 TACAAAGTTC
Statistics
Matches: 101, Mismatches: 30, Indels: 9
0.72 0.21 0.06
Matches are distributed among these distances:
54 4 0.04
55 36 0.36
56 45 0.45
57 16 0.16
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.31
Consensus pattern (56 bp):
AGATAGTCACAAAGGCTTTCCTTTCAGAGACTCACCATAAAGGCATTCTTTAACAA
Found at i:105286097 original size:10 final size:10
Alignment explanation
Indices: 105286071--105286110 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
105286061 TGTCTCTTAA
*
105286071 ATAATTATTAA
1 ATAATTA-TAC
105286082 ATAATTATAC
1 ATAATTATAC
105286092 ATAATTATAC
1 ATAATTATAC
105286102 ATAATTATA
1 ATAATTATA
105286111 AAAATTATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 21 0.75
11 7 0.25
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (10 bp):
ATAATTATAC
Found at i:105286107 original size:20 final size:21
Alignment explanation
Indices: 105286071--105286119 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
105286061 TGTCTCTTAA
105286071 ATAATTATTAAATAATTATAC
1 ATAATTATTAAATAATTATAC
*
105286092 ATAATTA-TACATAATTATA-
1 ATAATTATTAAATAATTATAC
*
105286111 AAAATTATT
1 ATAATTATT
105286120 TAGAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.24
20 12 0.48
21 7 0.28
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (21 bp):
ATAATTATTAAATAATTATAC
Found at i:105287837 original size:4 final size:4
Alignment explanation
Indices: 105287828--105287869 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
105287818 ACATGTGGAT
* **
105287828 TTTA TTTA TTTA TTTA TTT- TTAA GGTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
105287870 TATTGATGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
3 2 0.06
4 29 0.94
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:105289415 original size:15 final size:15
Alignment explanation
Indices: 105289380--105289413 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
105289370 ACTCAACTAT
*
105289380 TATTAATTTTTTAAA
1 TATTTATTTTTTAAA
105289395 TATTTATTTTTT-AA
1 TATTTATTTTTTAAA
105289409 TATTT
1 TATTT
105289414 TACCATATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTTATTTTTTAAA
Found at i:105293673 original size:38 final size:38
Alignment explanation
Indices: 105293592--105293717 Score: 173
Period size: 38 Copynumber: 3.3 Consensus size: 38
105293582 CACCGGCTCA
*
105293592 AAGCTTGCTAGGCACTAAGCCTGAATATCACATCGGCACG
1 AAGCCTGCTAGGCACTAAGCCTGAATA--ACATCGGCACG
*
105293632 AAGCCTGCTAGGCACTAAGCCTGAATAACATCGGCATG
1 AAGCCTGCTAGGCACTAAGCCTGAATAACATCGGCACG
* * *
105293670 AAGCCTGCTAGGCATTAAACCTAAATAACA-CAGGCACG
1 AAGCCTGCTAGGCACTAAGCCTGAATAACATC-GGCACG
105293708 AAGCCTGCTA
1 AAGCCTGCTA
105293718 TTTATAAGGC
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
37 1 0.01
38 52 0.66
40 26 0.33
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.18
Consensus pattern (38 bp):
AAGCCTGCTAGGCACTAAGCCTGAATAACATCGGCACG
Found at i:105296415 original size:15 final size:15
Alignment explanation
Indices: 105296373--105296418 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 15
105296363 GAAGTGAAGT
105296373 AAATGATTGAAATTAA
1 AAAT-ATTGAAATTAA
* *
105296389 ACA-AGT-AAATTAA
1 AAATATTGAAATTAA
105296402 AAATATTGAAATTAA
1 AAATATTGAAATTAA
105296417 AA
1 AA
105296419 TCAAGAGATA
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 9 0.38
16 2 0.08
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (15 bp):
AAATATTGAAATTAA
Found at i:105298582 original size:24 final size:24
Alignment explanation
Indices: 105298555--105298607 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
105298545 AAACCTAATT
*
105298555 CTAATCAATG-TCAAATATATTATG
1 CTAATCAATGCT-AAATATATTATA
*
105298579 CTAATGAATGCTAAATATATTATA
1 CTAATCAATGCTAAATATATTATA
105298603 CTAAT
1 CTAAT
105298608 AAGTACTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 25 0.96
25 1 0.04
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (24 bp):
CTAATCAATGCTAAATATATTATA
Found at i:105298616 original size:24 final size:24
Alignment explanation
Indices: 105298567--105298618 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
105298557 AATCAATGTC
* *
105298567 AAATATATTATGCTAATGAATGCT
1 AAATATATTATACTAATGAATACT
105298591 AAATATATTATACTAAT-AAGTACT
1 AAATATATTATACTAATGAA-TACT
105298615 AAAT
1 AAAT
105298619 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 23 0.92
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATGAATACT
Found at i:105313576 original size:7 final size:7
Alignment explanation
Indices: 105313559--105313588 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
105313549 CATAGGAGCT
105313559 TATGTATA
1 TATG-ATA
105313567 TATGATA
1 TATGATA
105313574 TATGATA
1 TATGATA
105313581 TATGATA
1 TATGATA
105313588 T
1 T
105313589 GCAAACGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.82
8 4 0.18
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (7 bp):
TATGATA
Found at i:105318946 original size:26 final size:26
Alignment explanation
Indices: 105318917--105319024 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
105318907 TGACACAAAT
105318917 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
105318943 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105318969 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
105318995 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
105319021 TGAT
1 TGAT
105319025 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:105320674 original size:27 final size:27
Alignment explanation
Indices: 105320639--105320754 Score: 160
Period size: 27 Copynumber: 4.3 Consensus size: 27
105320629 GAGGAAGCGT
* *
105320639 TCTGATGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
105320666 TCTAGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
105320693 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
105320720 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
105320748 TCTGGTG
1 TCTGGTG
105320755 AATCTGTCAC
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 71 0.91
28 7 0.09
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:105320768 original size:27 final size:26
Alignment explanation
Indices: 105320637--105320778 Score: 149
Period size: 27 Copynumber: 5.3 Consensus size: 26
105320627 TGGAGGAAGC
* * *
105320637 GTTCTGATGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* * *
105320664 GATCTAGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
*
105320691 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
105320718 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
** *
105320745 GTATCTGGTGAATCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
105320772 GTTCTGG
1 GTTCTGG
105320779 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
26 6 0.06
27 80 0.78
28 16 0.16
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:105320773 original size:54 final size:54
Alignment explanation
Indices: 105320650--105320778 Score: 170
Period size: 54 Copynumber: 2.4 Consensus size: 54
105320640 CTGATGGCTA
* * * **
105320650 TGCCACAAATATCTGATCTAGTGGCTCTGCCACAAATATCTGATCTGGTGGCTC
1 TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGAATC
* *
105320704 TGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGAATC
1 TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTG-ATCTGGTGAATC
*
105320759 TGTCACAT-TATCTGTTCTGG
1 TGCCACATATATCTGTTCTGG
105320779 CAGCCATGCT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
54 49 0.74
55 17 0.26
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (54 bp):
TGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGAATC
Found at i:105320873 original size:21 final size:20
Alignment explanation
Indices: 105320840--105320878 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
105320830 CTCCCCACAC
105320840 GGTGTAAGGTTGG-TATGAG
1 GGTGTAAGGTTGGATATGAG
105320859 GGTGTATACGGTTGGATATG
1 GGTGTA-A-GGTTGGATATG
105320879 GTTGTGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 1 0.06
21 6 0.35
22 4 0.24
ACGTcount: A:0.21, C:0.03, G:0.44, T:0.33
Consensus pattern (20 bp):
GGTGTAAGGTTGGATATGAG
Found at i:105323589 original size:15 final size:16
Alignment explanation
Indices: 105323554--105323595 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
105323544 TAAATAAAGC
105323554 TTAATATTATTATATTT
1 TTAATATT-TTATATTT
*
105323571 TTAATATTTTTTA-TT
1 TTAATATTTTATATTT
105323586 TTAAT-TTTTA
1 TTAATATTTTA
105323596 AAATATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 4 0.17
15 7 0.30
16 4 0.17
17 8 0.35
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTAATATTTTATATTT
Found at i:105323618 original size:20 final size:21
Alignment explanation
Indices: 105323593--105323633 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
105323583 ATTTTAATTT
*
105323593 TTAAAATATT-TAAAAAATAC
1 TTAAAAAATTATAAAAAATAC
105323613 TTAAAAAATTAATAAAAAATA
1 TTAAAAAATT-ATAAAAAATA
105323634 TTATAATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
TTAAAAAATTATAAAAAATAC
Found at i:105323714 original size:18 final size:18
Alignment explanation
Indices: 105323691--105323725 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
105323681 TTATAAACTA
*
105323691 TTTAATAATCAAATTTAT
1 TTTAATAATAAAATTTAT
105323709 TTTAATAATAAAATTTA
1 TTTAATAATAAAATTTA
105323726 AACAATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTAATAATAAAATTTAT
Found at i:105323782 original size:27 final size:28
Alignment explanation
Indices: 105323731--105323784 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
105323721 ATTTAAACAA
*
105323731 TATTCTTAATATATTATTAAAAAATATT
1 TATTCTTAATATATTAATAAAAAATATT
* *
105323759 TATT-TTAATATTTTAATAATAAATAT
1 TATTCTTAATATATTAATAAAAAATAT
105323785 ATTACAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (28 bp):
TATTCTTAATATATTAATAAAAAATATT
Found at i:105323811 original size:33 final size:32
Alignment explanation
Indices: 105323765--105323873 Score: 113
Period size: 33 Copynumber: 3.5 Consensus size: 32
105323755 TATTTATTTT
*
105323765 AATATTTTAATAATAAATATATTACAATTTATA
1 AATATTAT-ATAATAAATATATTACAATTTATA
**
105323798 AATATTTATATAATATTTATATTACAA-TT-T-
1 AATA-TTATATAATAAATATATTACAATTTATA
105323828 -ATA-TA-ATAATAAATTATATTACAATTTATA
1 AATATTATATAATAAA-TATATTACAATTTATA
*
105323858 ATTATTATATAATAAA
1 AATATTATATAATAAA
105323874 AATTTTATAC
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
26 6 0.10
27 12 0.19
28 2 0.03
29 4 0.06
31 3 0.05
32 4 0.06
33 28 0.45
34 3 0.05
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (32 bp):
AATATTATATAATAAATATATTACAATTTATA
Found at i:105323814 original size:11 final size:11
Alignment explanation
Indices: 105323791--105323835 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
105323781 ATATATTACA
105323791 ATTTATA-AAT
1 ATTTATATAAT
105323801 ATTTATATAAT
1 ATTTATATAAT
105323812 ATTTATATTACA-
1 ATTTATA-TA-AT
105323824 ATTTATATAAT
1 ATTTATATAAT
105323835 A
1 A
105323836 ATAAATTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
10 8 0.26
11 13 0.42
12 9 0.29
13 1 0.03
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (11 bp):
ATTTATATAAT
Found at i:105323831 original size:23 final size:25
Alignment explanation
Indices: 105323801--105323857 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 25
105323791 ATTTATAAAT
105323801 ATTTATATAAT-AT-TTATATTACA
1 ATTTATATAATAATATTATATTACA
105323824 ATTTATATAATAATAAATTATATTACA
1 ATTTATATAATAAT--ATTATATTACA
105323851 ATTTATA
1 ATTTATA
105323858 ATTATTATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 11 0.37
24 2 0.07
27 17 0.57
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (25 bp):
ATTTATATAATAATATTATATTACA
Found at i:105323887 original size:21 final size:21
Alignment explanation
Indices: 105323863--105323913 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
105323853 TTATAATTAT
*
105323863 TATATAATAAAAATTTTATAC
1 TATATAATAAAAATTTTATAA
105323884 TATATAATAAAAATTTTATAA
1 TATATAATAAAAATTTTATAA
*
105323905 TATAAAATA
1 TATATAATA
105323914 TGAGTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TATATAATAAAAATTTTATAA
Found at i:105323946 original size:22 final size:23
Alignment explanation
Indices: 105323896--105323945 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
105323886 TATAATAAAA
* *
105323896 ATTTT-ATAATATAAAATATGAGT
1 ATTTTAATTATAT-AAATATGAAT
105323919 ATTTTAATTATATAAATATGAAT
1 ATTTTAATTATATAAATATGAAT
105323942 ATTT
1 ATTT
105323946 ATTTAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (23 bp):
ATTTTAATTATATAAATATGAAT
Found at i:105324485 original size:19 final size:20
Alignment explanation
Indices: 105324461--105324499 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
105324451 TCCAAACACA
105324461 AAAAAAAAGTAGT-AATTTT
1 AAAAAAAAGTAGTCAATTTT
*
105324480 AAAAAAAATTAGTCAATTTT
1 AAAAAAAAGTAGTCAATTTT
105324500 CCATTAGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (20 bp):
AAAAAAAAGTAGTCAATTTT
Found at i:105324842 original size:22 final size:22
Alignment explanation
Indices: 105324817--105324885 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
105324807 CATTAACAAC
105324817 AAAATAATAACAAAATAATAGT
1 AAAATAATAACAAAATAATAGT
** * **
105324839 AAAATGGTAGCAAAATAGGGAG-
1 AAAATAATAACAAAATA-ATAGT
*
105324861 AAAATAATAA-AAAATAATATT
1 AAAATAATAACAAAATAATAGT
105324882 AAAA
1 AAAA
105324886 AACAAAAAAA
Statistics
Matches: 34, Mismatches: 11, Indels: 5
0.68 0.22 0.10
Matches are distributed among these distances:
20 1 0.03
21 10 0.29
22 21 0.62
23 2 0.06
ACGTcount: A:0.65, C:0.03, G:0.12, T:0.20
Consensus pattern (22 bp):
AAAATAATAACAAAATAATAGT
Found at i:105326653 original size:25 final size:25
Alignment explanation
Indices: 105326625--105326706 Score: 60
Period size: 25 Copynumber: 3.2 Consensus size: 25
105326615 TTTTAAATAA
105326625 AATCCGAATAATTAATTGATGGATT
1 AATCCGAATAATTAATTGATGGATT
** * ** *
105326650 AATCC-AAGTCTAAGAAATT-TTAAATA
1 AATCCGAA---TAATTAATTGATGGATT
105326676 AAATCCGAATAATTAATTGATGGATT
1 A-ATCCGAATAATTAATTGATGGATT
105326702 AATCC
1 AATCC
105326707 AAGTCTTTAT
Statistics
Matches: 39, Mismatches: 12, Indels: 12
0.62 0.19 0.19
Matches are distributed among these distances:
24 2 0.05
25 16 0.41
26 8 0.21
27 11 0.28
28 2 0.05
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (25 bp):
AATCCGAATAATTAATTGATGGATT
Found at i:105326665 original size:52 final size:52
Alignment explanation
Indices: 105326608--105326712 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
105326598 GTGTTTCAAG
105326608 TAAGAAATTTTAAATAAAATCCGAATAATTAATTGATGGATTAATCCAAGTC
1 TAAGAAATTTTAAATAAAATCCGAATAATTAATTGATGGATTAATCCAAGTC
105326660 TAAGAAATTTTAAATAAAATCCGAATAATTAATTGATGGATTAATCCAAGTC
1 TAAGAAATTTTAAATAAAATCCGAATAATTAATTGATGGATTAATCCAAGTC
105326712 T
1 T
105326713 TTATTATCAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (52 bp):
TAAGAAATTTTAAATAAAATCCGAATAATTAATTGATGGATTAATCCAAGTC
Found at i:105327826 original size:93 final size:91
Alignment explanation
Indices: 105327631--105327913 Score: 374
Period size: 93 Copynumber: 3.1 Consensus size: 91
105327621 TTTAATAAAG
* * * * * **
105327631 GAAAAAGATTACACATATCTATAATACGCATAATACGCTGACTCATTAAAAATTTTA-C-G-AAA
1 GAAAAAGAATACGCATATCTATAATACACATAATATGTTG-CTCATTAAAAAACTTACCAGAAAA
*
105327693 CCCAATGAGACAAAACCTCAATTAAAA
65 CCCAATGAGACAAAACCTCAATTAAGA
*
105327720 GAAAAAGAGTACGCATATCTATAATACACATAATATGTTGCTTCATTAAAAAACTTACCAAGAAA
1 GAAAAAGAATACGCATATCTATAATACACATAATATGTTGC-TCATTAAAAAACTTACC-AGAAA
** *
105327785 ACCCAATGAGACAAAACCTCGGTTAAGG
64 ACCCAATGAGACAAAACCTCAATTAAGA
*
105327813 GAAAAAGAATACGCATATCTATAATACACATAATATGTTGCCTCATTAAAAACCTTACCAGGAAA
1 GAAAAAGAATACGCATATCTATAATACACATAATATGTTG-CTCATTAAAAAACTTACCA-GAAA
*
105327878 ACTCAATGAGACAAAACCTCAATTAAGA
64 ACCCAATGAGACAAAACCTCAATTAAGA
105327906 GAAAAAGA
1 GAAAAAGA
105327914 GTACAACGTA
Statistics
Matches: 170, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
88 1 0.01
89 48 0.28
90 1 0.01
92 2 0.01
93 117 0.69
94 1 0.01
ACGTcount: A:0.48, C:0.18, G:0.12, T:0.22
Consensus pattern (91 bp):
GAAAAAGAATACGCATATCTATAATACACATAATATGTTGCTCATTAAAAAACTTACCAGAAAAC
CCAATGAGACAAAACCTCAATTAAGA
Found at i:105332579 original size:7 final size:7
Alignment explanation
Indices: 105332563--105332616 Score: 74
Period size: 7 Copynumber: 7.7 Consensus size: 7
105332553 TTGATAACTA
*
105332563 ATATTAT
1 ATATTTT
105332570 ATATTTT
1 ATATTTT
105332577 ATATTTT
1 ATATTTT
105332584 ATATTTT
1 ATATTTT
105332591 ATATTTT
1 ATATTTT
105332598 ATATTATT
1 ATATT-TT
*
105332606 -TATTAT
1 ATATTTT
105332612 ATATT
1 ATATT
105332617 ATATGTATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 1 0.02
7 40 0.93
8 2 0.05
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (7 bp):
ATATTTT
Found at i:105332587 original size:21 final size:22
Alignment explanation
Indices: 105332563--105332616 Score: 85
Period size: 21 Copynumber: 2.5 Consensus size: 22
105332553 TTGATAACTA
105332563 ATATTATATATTTTATATT-TT
1 ATATTATATATTTTATATTATT
*
105332584 ATATTTTATATTTTATATTATT
1 ATATTATATATTTTATATTATT
105332606 -TATTATATATT
1 ATATTATATATT
105332617 ATATGTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 28 0.93
22 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
ATATTATATATTTTATATTATT
Found at i:105336580 original size:5 final size:5
Alignment explanation
Indices: 105336570--105336601 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
105336560 AGATATGTGA
105336570 AAAAT AAAAT AAAAT -AAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
105336602 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:105336590 original size:14 final size:14
Alignment explanation
Indices: 105336571--105336601 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
105336561 GATATGTGAA
105336571 AAATAAAATAAAAT
1 AAATAAAATAAAAT
105336585 AAATAAAATAAAAT
1 AAATAAAATAAAAT
105336599 AAA
1 AAA
105336602 GAACACACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:105341021 original size:5 final size:5
Alignment explanation
Indices: 105341011--105341042 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
105341001 CAATTTGTGA
105341011 AAAAT AAAAT AAAAT -AAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
105341043 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:105341031 original size:14 final size:14
Alignment explanation
Indices: 105341012--105341042 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
105341002 AATTTGTGAA
105341012 AAATAAAATAAAAT
1 AAATAAAATAAAAT
105341026 AAATAAAATAAAAT
1 AAATAAAATAAAAT
105341040 AAA
1 AAA
105341043 GAACACACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:105351513 original size:31 final size:30
Alignment explanation
Indices: 105351478--105351535 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 30
105351468 AATTTGAAAA
105351478 AAACTCATATACCAAAATAAATATTAAAGCC
1 AAACTCATATACCAAAATAAA-ATTAAAGCC
* * * *
105351509 AAACTTATGTATCAAATTAAAATTAAA
1 AAACTCATATACCAAAATAAAATTAAA
105351536 AAAAAAACTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 6 0.26
31 17 0.74
ACGTcount: A:0.55, C:0.14, G:0.03, T:0.28
Consensus pattern (30 bp):
AAACTCATATACCAAAATAAAATTAAAGCC
Found at i:105352109 original size:17 final size:17
Alignment explanation
Indices: 105352087--105352120 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
105352077 TATAAGAGAG
*
105352087 AATGGAAAGGAAAGGAA
1 AATGGAAAGAAAAGGAA
*
105352104 AATGGAGAGAAAAGGAA
1 AATGGAAAGAAAAGGAA
105352121 GGGAAAGGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.35, T:0.06
Consensus pattern (17 bp):
AATGGAAAGAAAAGGAA
Found at i:105352134 original size:21 final size:22
Alignment explanation
Indices: 105352092--105352136 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
105352082 GAGAGAATGG
*
105352092 AAAGGAAAGGAAAATGGAGAGA
1 AAAGGAAAGGAAAAGGGAGAGA
* *
105352114 AAAGGAAGGGAAAGGGGGAGAGA
1 AAAGGAAAGGAAA-AGGGAGAGA
105352137 TTTTTCACCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.53, C:0.00, G:0.44, T:0.02
Consensus pattern (22 bp):
AAAGGAAAGGAAAAGGGAGAGA
Found at i:105352804 original size:15 final size:15
Alignment explanation
Indices: 105352773--105352805 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
105352763 ATAAAAGCAT
105352773 TTATATTATGTATAA
1 TTATATTATGTATAA
105352788 TTATAATTATGTA-AA
1 TTAT-ATTATGTATAA
105352803 TTA
1 TTA
105352806 GGAGACATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (15 bp):
TTATATTATGTATAA
Found at i:105360036 original size:14 final size:14
Alignment explanation
Indices: 105360019--105360061 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
105360009 AGTTTTTCAT
105360019 AAAATTAAGAAAATA
1 AAAATTAA-AAAATA
*
105360034 AAAATTAAAAAAGA
1 AAAATTAAAAAATA
*
105360048 AGAAAATAAAAAAT
1 A-AAATTAAAAAAT
105360062 TAAATTCTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 6 0.25
15 18 0.75
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (14 bp):
AAAATTAAAAAATA
Found at i:105360206 original size:12 final size:12
Alignment explanation
Indices: 105360189--105360213 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
105360179 GGTGTTCATT
105360189 CGGTTAACCGAC
1 CGGTTAACCGAC
105360201 CGGTTAACCGAC
1 CGGTTAACCGAC
105360213 C
1 C
105360214 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:105360388 original size:9 final size:9
Alignment explanation
Indices: 105360374--105360434 Score: 104
Period size: 9 Copynumber: 6.8 Consensus size: 9
105360364 TTTGGTTAAA
105360374 AATTACCCG
1 AATTACCCG
105360383 AATTACCCG
1 AATTACCCG
105360392 AATTACCCG
1 AATTACCCG
105360401 AATTACCCG
1 AATTACCCG
*
105360410 AATTAACCG
1 AATTACCCG
*
105360419 AATTAACCG
1 AATTACCCG
105360428 AATTACC
1 AATTACC
105360435 GAAAAATACC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.38, C:0.30, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:105376406 original size:12 final size:12
Alignment explanation
Indices: 105376385--105376427 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
105376375 TGATTTTCTC
*
105376385 AAAATAGAAATG
1 AAAATGGAAATG
*
105376397 AAAATGGAAATA
1 AAAATGGAAATG
105376409 AAAATGGAAATG
1 AAAATGGAAATG
105376421 ATAAATG
1 A-AAATG
105376428 ATAAATGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.63, C:0.00, G:0.19, T:0.19
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:105376413 original size:18 final size:18
Alignment explanation
Indices: 105376386--105376420 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
105376376 GATTTTCTCA
*
105376386 AAATAGAAATGAAAATGG
1 AAATAAAAATGAAAATGG
*
105376404 AAATAAAAATGGAAATG
1 AAATAAAAATGAAAATG
105376421 ATAAATGATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (18 bp):
AAATAAAAATGAAAATGG
Found at i:105385234 original size:22 final size:20
Alignment explanation
Indices: 105385184--105385234 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 20
105385174 TACATGAAAT
*
105385184 TAAAAAAATAACTCTTAATT
1 TAAAAAAATAACTCTTAATC
105385204 TAAAGAAAATAAACTCAATT-ATC
1 TAAA-AAAAT-AACTC--TTAATC
105385227 TAAAAAAA
1 TAAAAAAA
105385235 GTTTTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 4 0.15
21 5 0.19
22 9 0.35
23 6 0.23
24 2 0.08
ACGTcount: A:0.61, C:0.10, G:0.02, T:0.27
Consensus pattern (20 bp):
TAAAAAAATAACTCTTAATC
Found at i:105385401 original size:25 final size:24
Alignment explanation
Indices: 105385345--105385403 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
105385335 TTTTTTTGGA
* *
105385345 TAATTATGTTTATTTTCTTTAAATT
1 TAATTAT-TTTATTTTATTTAAATG
* *
105385370 TATTTATTTTATTATTATTTACATG
1 TAATTATTTTATT-TTATTTAAATG
105385395 TAATTATTT
1 TAATTATTT
105385404 GATCGGGTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 6 0.21
25 22 0.79
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (24 bp):
TAATTATTTTATTTTATTTAAATG
Found at i:105388928 original size:13 final size:12
Alignment explanation
Indices: 105388892--105388928 Score: 58
Period size: 11 Copynumber: 3.1 Consensus size: 12
105388882 CCTTCCCCCC
105388892 TCCCTTCTCTC-
1 TCCCTTCTCTCT
105388903 TCCCTTCTCTCT
1 TCCCTTCTCTCT
105388915 TCCCTCTCTCTCT
1 TCCCT-TCTCTCT
105388928 T
1 T
105388929 TTTTTTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.46
12 5 0.21
13 8 0.33
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (12 bp):
TCCCTTCTCTCT
Found at i:105389414 original size:3 final size:3
Alignment explanation
Indices: 105389390--105389460 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
105389380 AATATCCTTG
* * * **
105389390 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
105389437 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
105389461 GTACGTGTAT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:105389457 original size:23 final size:22
Alignment explanation
Indices: 105389403--105389463 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
105389393 TTTTTATATT
*
105389403 ATTAGTATTATTA-GTATTACC
1 ATTATTATTATTATGTATTACC
**
105389424 ATTATTATTATTATGTATTAGT
1 ATTATTATTATTATGTATTACC
*
105389446 ATATATTTTTATTATGTA
1 AT-TATTATTATTATGTA
105389464 CGTGTATACC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.35
22 8 0.24
23 14 0.41
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (22 bp):
ATTATTATTATTATGTATTACC
Found at i:105389470 original size:23 final size:23
Alignment explanation
Indices: 105389426--105389471 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
105389416 GTATTACCAT
*
105389426 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
105389449 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
105389472 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:105389740 original size:19 final size:19
Alignment explanation
Indices: 105389705--105389741 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
105389695 ATATATTACC
**
105389705 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
105389724 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
105389742 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:105392146 original size:3 final size:3
Alignment explanation
Indices: 105392138--105392182 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
105392128 ACATTTCCAA
105392138 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
105392183 CATCAAAAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:105392623 original size:29 final size:31
Alignment explanation
Indices: 105392560--105392627 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 31
105392550 TATGCATCTT
* * *
105392560 TGGTACATGTACTTTCATAAAATGTTCAATT
1 TGGTACTTATACTTTCATAAAATGTTCAATG
*
105392591 TGGTACTTATACTTT-A-AAAATGTTTAATG
1 TGGTACTTATACTTTCATAAAATGTTCAATG
105392620 TGGTACTT
1 TGGTACTT
105392628 GAACTATCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.58
30 1 0.03
31 13 0.39
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (31 bp):
TGGTACTTATACTTTCATAAAATGTTCAATG
Found at i:105417774 original size:28 final size:28
Alignment explanation
Indices: 105417726--105417779 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
105417716 GCTTAGATTC
*
105417726 TAAAAAATAATATATATATATATAAATT
1 TAAAAAATAATATAAATATATATAAATT
*
105417754 TAAAAAATATTA-AAATGATATATAAA
1 TAAAAAATAATATAAAT-ATATATAAA
105417780 AACTCTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 3 0.13
28 20 0.87
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (28 bp):
TAAAAAATAATATAAATATATATAAATT
Found at i:105422668 original size:25 final size:26
Alignment explanation
Indices: 105422631--105422682 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
105422621 TCAAACATGC
105422631 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
105422657 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
105422682 A
1 A
105422683 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:105424206 original size:26 final size:25
Alignment explanation
Indices: 105424163--105424245 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 25
105424153 CATGAAATTC
105424163 TTATCATGAACATTTACCTAACCCA
1 TTATCATGAACATTTACCTAACCCA
105424188 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCCA
*
105424214 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCCA
105424240 TTATCA
1 TTATCA
105424246 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
25 8 0.15
26 46 0.84
27 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCCA
Found at i:105428449 original size:25 final size:27
Alignment explanation
Indices: 105428412--105428464 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
105428402 TCAAACATGC
105428412 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
105428438 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
105428464 A
1 A
105428465 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:105429989 original size:26 final size:26
Alignment explanation
Indices: 105429951--105430008 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
105429941 CATGAAATTC
105429951 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
105429977 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
105430003 TTATCA
1 TTATCA
105430009 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:105430599 original size:5 final size:5
Alignment explanation
Indices: 105430589--105430614 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
105430579 AATCTTTATA
105430589 ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT A
105430615 ATTCTGCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:105430932 original size:12 final size:12
Alignment explanation
Indices: 105430915--105430995 Score: 67
Period size: 12 Copynumber: 6.7 Consensus size: 12
105430905 TTTATTTATA
*
105430915 TATATTATCCAT
1 TATATTATACAT
**
105430927 TATATTAT-TTT
1 TATATTATACAT
105430938 TATTATTATACAT
1 TA-TATTATACAT
* *
105430951 TTTATTTATAAAT
1 TATA-TTATACAT
105430964 TATATTATACAT
1 TATATTATACAT
*
105430976 TATATTTTAC-T
1 TATATTATACAT
105430987 ATATATTAT
1 -TATATTAT
105430996 GCCTTACATT
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
11 4 0.07
12 39 0.71
13 12 0.22
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (12 bp):
TATATTATACAT
Found at i:105430955 original size:21 final size:23
Alignment explanation
Indices: 105430902--105430995 Score: 77
Period size: 25 Copynumber: 3.9 Consensus size: 23
105430892 AATATATATT
*
105430902 ATTTTTATTTATATATATTATCC
1 ATTTTTATTTATATATATTATAC
*
105430925 ATTATATTATTTTTAT-TATTATAC
1 ATT-T-TTATTTATATATATTATAC
105430949 A-TTTTATTTATAAATTATATTATAC
1 ATTTTTATTTAT--A-TATATTATAC
*
105430974 A-TTATATTTTACTATATATTAT
1 ATTTTTA-TTTA-TATATATTAT
105430996 GCCTTACATT
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
21 7 0.12
22 1 0.02
23 5 0.08
24 18 0.31
25 23 0.39
26 4 0.07
27 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (23 bp):
ATTTTTATTTATATATATTATAC
Done.