Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 327 of 352
Found at i:105733696 original size:16 final size:16
Alignment explanation
Indices: 105733675--105733725 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
105733665 AAGAAAGAGC
105733675 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
105733691 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
105733707 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
105733723 AAA
1 AAA
105733726 ATACTAGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:105738404 original size:45 final size:45
Alignment explanation
Indices: 105738317--105738405 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 45
105738307 AAATCTACTT
** * *
105738317 CATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGCTC
1 CATAGCCGATACATGGAGATAAGACTCGAAATCTTCGATCTGCTC
* *
105738362 CATAGTCGATACATGGAGATAAGA-TCTGAAATCTTCGGTCTGCT
1 CATAGCCGATACATGGAGATAAGACTC-GAAATCTTCGATCTGCT
105738406 TCCCGCAACT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
44 2 0.05
45 35 0.95
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (45 bp):
CATAGCCGATACATGGAGATAAGACTCGAAATCTTCGATCTGCTC
Found at i:105738582 original size:176 final size:175
Alignment explanation
Indices: 105738283--105739219 Score: 1401
Period size: 176 Copynumber: 5.3 Consensus size: 175
105738273 CTCCGCTACC
*
105738283 TCAGAGAGATAAGGTCT-GTGGCTAAAATCTACTTCATAGCCGATACATGGAGATAAGACTCGCC
1 TCAGAGAGATAAGG-CTGGTGGCTAAAATCTGC-TCATAGCCGATACATGGAGATAAGACTCGCC
* * *
105738347 ATTTTTGATCTGCTCCATAGTCGATACATGGAGATAAGATCTGAAATCTTCGGTCTGCTTCCCGC
64 ATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGAAATCTTCGATCTGCTTCCTGC
* *
105738412 AACTTCAGAAAGATAAGACCTGTATCTTTAACCTGCTCTCTGTAACT
129 AACTTCAGAAAGATAAGACCTGTATCTTCAACCTGCTCTCTGCAACT
* * *
105738459 TCAGAGAGATAAGCCTGGTGGCTAAGATCTGCTCTATAGCCGATACATGGAGATAATACTCGCCA
1 TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTC-ATAGCCGATACATGGAGATAAGACTCGCCA
* * * *
105738524 TTTTTTATCTGCTCCATAGTCAATACATGGAGATAAGATCTGAAATCTTCGATCTGCTTCCTACA
65 TTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGAAATCTTCGATCTGCTTCCTGCA
*
105738589 ACTTCAGAAAGATAAGACCTATATCTTCAACCTGCTCTCTGCAACT
130 ACTTCAGAAAGATAAGACCTGTATCTTCAACCTGCTCTCTGCAACT
* *
105738635 TCAGAGAGATAAGGCTGGTGACCAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCA
1 TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCT-CATAGCCGATACATGGAGATAAGACTCGCCA
* * * * * * *
105738700 CTTTCGATTTGATCCATAGCCGATACATGGAGATAAGATCAGTAATCTTCGATCTGCTTGCTGCA
65 TTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGAAATCTTCGATCTGCTTCCTGCA
105738765 ACTTCAGAAAGATAAGACCTGTATCTTCAACCTGCTCTCTGCAACT
130 ACTTCAGAAAGATAAGACCTGTATCTTCAACCTGCTCTCTGCAACT
* * *
105738811 TCAGAGAGATAAGACTAGTGGCTAAAATCTGCTGCATAGCCGATACATGGAGATAAGACTCACCA
1 TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCT-CATAGCCGATACATGGAGATAAGACTCGCCA
*
105738876 TTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGAAATCTTCGGTCTGCTTCCTGCA
65 TTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGAAATCTTCGATCTGCTTCCTGCA
*
105738941 ACTTCAGAAAGATAAGACCTATATCTTCAACCTGCTCTCTGCAACT
130 ACTTCAGAAAGATAAGACCTGTATCTTCAACCTGCTCTCTGCAACT
* * * * *
105738987 TCAGAGAGATAAGGTTGGTGACCAAAATCTGCTCCATAACCGATACATAGAGATAAGACTCG-CA
1 TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCT-CATAGCCGATACATGGAGATAAGACTCGCCA
* * * * * *
105739051 CTTTCGATCTGCTCTATAACCGATACATGGAGATAAGATCAGTAATCTTCGATCTGCTTCCTGCA
65 TTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGAAATCTTCGATCTGCTTCCTGCA
* *
105739116 ACTTCAGAAAGATAAGACCTGTATCTTCAACTTGCTCTCTGTAACT
130 ACTTCAGAAAGATAAGACCTGTATCTTCAACCTGCTCTCTGCAACT
* * *
105739162 TCAGAGAGATAAAGCTGGTGGTTAAAACCTGCTGCATAGCCGATACATGGAGATAAGA
1 TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCT-CATAGCCGATACATGGAGATAAGA
105739220 TCTGTAATCT
Statistics
Matches: 686, Mismatches: 72, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
175 156 0.23
176 529 0.77
177 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (175 bp):
TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCATAGCCGATACATGGAGATAAGACTCGCCAT
TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGAAATCTTCGATCTGCTTCCTGCAA
CTTCAGAAAGATAAGACCTGTATCTTCAACCTGCTCTCTGCAACT
Found at i:105738624 original size:43 final size:44
Alignment explanation
Indices: 105738554--105738647 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 44
105738544 CAATACATGG
* * *
105738554 AGATAAGATCTGAAATCTTCGATCTGCT-TCCTACAACTTCAGAA
1 AGATAAGACCTGAAATCTTCAACCTGCTCT-CTACAACTTCAGAA
* * *
105738598 AGATAAGACCT-ATATCTTCAACCTGCTCTCTGCAACTTCAGAG
1 AGATAAGACCTGAAATCTTCAACCTGCTCTCTACAACTTCAGAA
105738641 AGATAAG
1 AGATAAG
105738648 GCTGGTGACC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
43 32 0.74
44 11 0.26
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (44 bp):
AGATAAGACCTGAAATCTTCAACCTGCTCTCTACAACTTCAGAA
Found at i:105738800 original size:43 final size:44
Alignment explanation
Indices: 105738730--105738825 Score: 124
Period size: 43 Copynumber: 2.2 Consensus size: 44
105738720 CGATACATGG
* * *
105738730 AGATAAGATCAGTAATCTTCGATCTGCT-TGCTGCAACTTCAGAA
1 AGATAAGACCAGTAATCTTCAACCTGCTCT-CTGCAACTTCAGAA
* *
105738774 AGATAAGACCTGT-ATCTTCAACCTGCTCTCTGCAACTTCAGAG
1 AGATAAGACCAGTAATCTTCAACCTGCTCTCTGCAACTTCAGAA
105738817 AGATAAGAC
1 AGATAAGAC
105738826 TAGTGGCTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
43 34 0.74
44 12 0.26
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (44 bp):
AGATAAGACCAGTAATCTTCAACCTGCTCTCTGCAACTTCAGAA
Found at i:105738843 original size:43 final size:43
Alignment explanation
Indices: 105738751--105738843 Score: 100
Period size: 43 Copynumber: 2.2 Consensus size: 43
105738741 GTAATCTTCG
* **
105738751 ATCTGCTTGCTGCAACTTCAGAAAGATAAGACCTGTATCTTCA
1 ATCTGCTTGCTGCAACTTCAGAAAGATAAGACCTGTAGCTAAA
* * *
105738794 ACCTGCTCT-CTGCAACTTCAGAGAGATAAGA-CTAGTGGCTAAA
1 ATCTGCT-TGCTGCAACTTCAGAAAGATAAGACCT-GTAGCTAAA
105738837 ATCTGCT
1 ATCTGCT
105738844 GCATAGCCGA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
42 2 0.05
43 38 0.93
44 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
ATCTGCTTGCTGCAACTTCAGAAAGATAAGACCTGTAGCTAAA
Found at i:105738932 original size:45 final size:45
Alignment explanation
Indices: 105738837--105738933 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 45
105738827 AGTGGCTAAA
* * * *
105738837 ATCTGCTGCATAGCCGATACATGGAGATAAGACTCACCATTTTTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCACAATCTTCG
*
105738882 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGA-AATCTTCG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTCACAATCTTCG
*
105738927 GTCTGCT
1 ATCTGCT
105738934 TCCTGCAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
45 42 0.93
46 3 0.07
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCACAATCTTCG
Found at i:105741013 original size:91 final size:88
Alignment explanation
Indices: 105740852--105741023 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 88
105740842 TAATTAAGCC
* * * * * * *
105740852 TTTTTTTTGCACTCATTTGGATACTTAAACTTTCAAAATGGATTAAAAAGGCCTTCAAGCCTTTT
1 TTTTTTTTGAACTCAATTGGATACTTAAACTTTCAAAATGCATAAAAAAGACCCTCAAACCTTTT
105740917 AAAAAAAAAACAATTAAGTCCCTAT
66 --AAAAAAAACAATTAAGTCCCTAT
* * **
105740942 TTTTGTTTTGAACTCAATTGGGTACTTGAACTTTCAAAATGCATAAAAAAGACCCTCAAATTTTT
1 TTTT-TTTTGAACTCAATTGGATACTTAAACTTTCAAAATGCATAAAAAAGACCCTCAAACCTTT
*
105741007 TCAAAAAAACAATTAAG
65 TAAAAAAAACAATTAAG
105741024 CCCATGCTTT
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
89 15 0.22
90 4 0.06
91 50 0.72
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (88 bp):
TTTTTTTTGAACTCAATTGGATACTTAAACTTTCAAAATGCATAAAAAAGACCCTCAAACCTTTT
AAAAAAAACAATTAAGTCCCTAT
Found at i:105741162 original size:28 final size:28
Alignment explanation
Indices: 105741111--105741165 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
105741101 ATAAAAATCG
105741111 TAAAAAAATTATAAAATATATATAAATA
1 TAAAAAAATTATAAAATATATATAAATA
*
105741139 TAAAAAAATTTATAAAAT-TTTATAAAT
1 TAAAAAAA-TTATAAAATATATATAAAT
105741166 TCGTAAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 16 0.64
29 9 0.36
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (28 bp):
TAAAAAAATTATAAAATATATATAAATA
Found at i:105741180 original size:29 final size:29
Alignment explanation
Indices: 105741105--105741181 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 29
105741095 AAAAAAATAA
105741105 AAATCGTAAAAAAATTATAAAATATATAT
1 AAATCGTAAAAAAATTATAAAATATATAT
* *
105741134 AAAT-ATAAAAAAATTTATAAAAT-TTTAT
1 AAATCGTAAAAAAA-TTATAAAATATATAT
*
105741162 AAATTCGTAAGAAAATTATA
1 AAA-TCGTAAAAAAATTATA
105741182 GAAAATGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 15 0.37
29 19 0.46
30 7 0.17
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.34
Consensus pattern (29 bp):
AAATCGTAAAAAAATTATAAAATATATAT
Found at i:105741435 original size:36 final size:35
Alignment explanation
Indices: 105741358--105741436 Score: 97
Period size: 35 Copynumber: 2.2 Consensus size: 35
105741348 TAGTGGTCGT
* * *
105741358 TAATTTTTTATGATTTTTATAAAATTTTACATTTT
1 TAATTTTTTACGATTTTTATAAAATTCTACATTTC
*
105741393 TTATTTTTTACGATTTTTATAAAAAATTCTA-ATTTC
1 TAATTTTTTACGATTTTTAT--AAAATTCTACATTTC
105741429 TAATTTTT
1 TAATTTTT
105741437 AATAAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
35 18 0.49
36 11 0.30
37 8 0.22
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.61
Consensus pattern (35 bp):
TAATTTTTTACGATTTTTATAAAATTCTACATTTC
Found at i:105741637 original size:88 final size:88
Alignment explanation
Indices: 105741532--105741717 Score: 288
Period size: 89 Copynumber: 2.1 Consensus size: 88
105741522 ATAAGAACAG
105741532 GGGCTTAATTG-TTTTTTTGAA-AAATTTTGAGGGCC-TTTTTGATGCATTTTGAAAGTTCAAGT
1 GGGCTTAATTGCTTTTTTTGAAGAAA-TTT-AGGGCCTTTTTTGATGCATTTTGAAAGTTCAAGT
*
105741594 ACCCAATTGAGTGGAAAAAAAAGCAA
64 ACCCAATTGAGTGCAAAAAAAAG-AA
*
105741620 GGGCTTAATTGCTTTTTTTGAAGAAATTTAGGGCCTTTTTTGATGCATTTTGAAAGTTCAAGTGC
1 GGGCTTAATTGCTTTTTTTGAAGAAATTTAGGGCCTTTTTTGATGCATTTTGAAAGTTCAAGTAC
* *
105741685 TCAATTGAGTGCAAAAAAAAGAG
66 CCAATTGAGTGCAAAAAAAAGAA
105741708 GGGCTTAATT
1 GGGCTTAATT
105741718 ATTTTGCTTT
Statistics
Matches: 91, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
88 28 0.31
89 60 0.66
90 3 0.03
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (88 bp):
GGGCTTAATTGCTTTTTTTGAAGAAATTTAGGGCCTTTTTTGATGCATTTTGAAAGTTCAAGTAC
CCAATTGAGTGCAAAAAAAAGAA
Found at i:105743593 original size:111 final size:112
Alignment explanation
Indices: 105743379--105743593 Score: 245
Period size: 111 Copynumber: 1.9 Consensus size: 112
105743369 CTAATTGAAA
* * * * * **
105743379 TTAGATGATGATGAAATTAAATTGGTTAGCTATAAAACTTAAAGTGTTTGTTTCACATTAGAATT
1 TTAGATAATAATGAAATTAAATTGGTTAACTATAAAACGTAAAGTGTTTGCTTCACATTAGAACA
* * * *
105743444 CTCCATCTAGGGTGGAAGAGTACAACTAGGGTGTAACCATGAAAGCG
66 CTCCATCCAGGGTGGAAGACTACAACTAGAGTGGAACCATGAAAGCG
* * **
105743491 TTAGATAATAATGAAATTAAATTGGTTAACTATAAAA-GTCATGTGTTTGCTTCATGTTAGAACA
1 TTAGATAATAATGAAATTAAATTGGTTAACTATAAAACGTAAAGTGTTTGCTTCACATTAGAACA
** *
105743555 CTCTGTCCAGGTTGGAACG-CTACAACTAGAGTGGAACCA
66 CTCCATCCAGGGTGGAA-GACTACAACTAGAGTGGAACCA
105743594 AGTTTTCATG
Statistics
Matches: 84, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
111 49 0.58
112 35 0.42
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (112 bp):
TTAGATAATAATGAAATTAAATTGGTTAACTATAAAACGTAAAGTGTTTGCTTCACATTAGAACA
CTCCATCCAGGGTGGAAGACTACAACTAGAGTGGAACCATGAAAGCG
Found at i:105750192 original size:12 final size:12
Alignment explanation
Indices: 105750175--105750304 Score: 52
Period size: 12 Copynumber: 10.5 Consensus size: 12
105750165 TGTATTTTTC
105750175 ATTATTATTACT
1 ATTATTATTACT
105750187 ATTATT-TTCACT
1 ATTATTATT-ACT
*
105750199 TTTATTACTATCACT
1 ATTATTA-T-T-ACT
* * *
105750214 ATCATCATTTCT
1 ATTATTATTACT
*
105750226 -TTATTATTTTCT
1 ATTATTA-TTACT
*
105750238 ATTACTATTA-T
1 ATTATTATTACT
*
105750249 CATTATTATTAAT
1 -ATTATTATTACT
* * *
105750262 ATAAATATTAAT
1 ATTATTATTACT
*
105750274 ATTCTTATTTACT
1 ATTATTA-TTACT
*
105750287 TTTATTATTTA-T
1 ATTATTA-TTACT
105750299 ATTATT
1 ATTATT
105750305 GTTTTACCAC
Statistics
Matches: 90, Mismatches: 19, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
11 7 0.08
12 52 0.58
13 20 0.22
14 2 0.02
15 9 0.10
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTATTATTACT
Found at i:105750196 original size:21 final size:21
Alignment explanation
Indices: 105750170--105750209 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
105750160 CTATTTGTAT
105750170 TTTTCA-TTATTATTACTATTA
1 TTTTCACTT-TTATTACTATTA
105750191 TTTTCACTTTTATTACTAT
1 TTTTCACTTTTATTACTAT
105750210 CACTATCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTCACTTTTATTACTATTA
Found at i:105764251 original size:16 final size:16
Alignment explanation
Indices: 105764218--105764251 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
105764208 AAACTCTGTT
* *
105764218 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
105764234 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
105764250 AA
1 AA
105764252 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:105767077 original size:21 final size:21
Alignment explanation
Indices: 105767051--105767091 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
105767041 AGACGAGCAA
* *
105767051 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
105767072 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
105767092 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:105769030 original size:16 final size:16
Alignment explanation
Indices: 105768997--105769030 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
105768987 GGAGATTGTT
* *
105768997 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
105769013 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
105769029 AA
1 AA
105769031 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:105787547 original size:31 final size:32
Alignment explanation
Indices: 105787476--105787548 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
105787466 AAATTTTCAA
105787476 TTTAATCACT-ATCGTTTTAGATCGTTTCTAT
1 TTTAATCACTCATCGTTTTAGATCGTTTCTAT
** * *
105787507 TTTGGTCACTCAT-GTTTTAGATCGTTTTTGT
1 TTTAATCACTCATCGTTTTAGATCGTTTCTAT
*
105787538 TTTACTCACTC
1 TTTAATCACTC
105787549 TTTATTAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 33 0.94
32 2 0.06
ACGTcount: A:0.18, C:0.18, G:0.12, T:0.52
Consensus pattern (32 bp):
TTTAATCACTCATCGTTTTAGATCGTTTCTAT
Found at i:105787990 original size:25 final size:23
Alignment explanation
Indices: 105787948--105787998 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 23
105787938 GCCATAATCT
*
105787948 ATTTTTTATAAAAATATAAT-AAA
1 ATTTTTTAAAAAAATAT-ATGAAA
105787971 ATTTTTTAAAAGAAACTATATGAAA
1 ATTTTTTAAAA-AAA-TATATGAAA
105787996 ATT
1 ATT
105787999 ATATTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 10 0.42
24 5 0.21
25 9 0.38
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (23 bp):
ATTTTTTAAAAAAATATATGAAA
Found at i:105790794 original size:27 final size:26
Alignment explanation
Indices: 105790748--105790799 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
105790738 TTGTTAAAGG
* *
105790748 TGATTTTTTTAGTTTCTTTCTTTTTT
1 TGATTTTGTTAGTTTCTTTCATTTTT
*
105790774 TGATTTTGTTATTATTCTTTCATTTT
1 TGATTTTGTTAGT-TTCTTTCATTTT
105790800 CTTCTTGCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.12, C:0.08, G:0.08, T:0.73
Consensus pattern (26 bp):
TGATTTTGTTAGTTTCTTTCATTTTT
Found at i:105791687 original size:25 final size:22
Alignment explanation
Indices: 105791633--105791687 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
105791623 TATTATTTTA
* *
105791633 TGTAAATATTTTCTAAATTTAT
1 TGTATATATTTTCTAAAATTAT
*
105791655 TGTGTATATTTTCTTTAAAATTAT
1 TGTATATATTTTC--TAAAATTAT
105791679 TCGTATATA
1 T-GTATATA
105791688 GTTTGGCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 11 0.42
24 9 0.35
25 6 0.23
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (22 bp):
TGTATATATTTTCTAAAATTAT
Found at i:105798683 original size:104 final size:105
Alignment explanation
Indices: 105798519--105798710 Score: 278
Period size: 104 Copynumber: 1.8 Consensus size: 105
105798509 TTTGTATTCT
* *
105798519 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAGCAAATTTTCATCTT
1 AGCAAAATTTGCTATCTTG---AATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
*
105798584 ATCCGTTGTGATAATCTTTTTCATCTTATTCCTCTCGTATCTC
63 ATCCATTGTGATAATCTTTTTCATCTTATTCCTCTCGTATCTC
** * *
105798627 AGCAAAATTTGCTATCTTG-ATTTGTTTGTTTAGAGCTTTGCTCTCAACAAAATTTCATTTTGTC
1 AGCAAAATTTGCTATCTTGAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTTATC
*
105798691 CATTTTGATAATCTTTTTCA
66 CATTGTGATAATCTTTTTCA
105798711 AGCATTTTTC
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
104 57 0.75
108 19 0.25
ACGTcount: A:0.23, C:0.18, G:0.11, T:0.47
Consensus pattern (105 bp):
AGCAAAATTTGCTATCTTGAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTTATC
CATTGTGATAATCTTTTTCATCTTATTCCTCTCGTATCTC
Found at i:105799218 original size:44 final size:45
Alignment explanation
Indices: 105799093--105799710 Score: 593
Period size: 44 Copynumber: 14.0 Consensus size: 45
105799083 ATAGGTCCTA
* * * *
105799093 TCTTCTTATATTGGTAG-GAAGTGGATCAAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
105799136 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
105799181 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* *
105799225 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * **
105799268 TCTTCCCATATTGGTGGCGAAGTAGATC-ACAGAAAATAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGA-AGATAGCAGATCTTG
* * * * *
105799313 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* *
105799357 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
105799400 TCTTCCCATATTGGTGGCGAAGTAGATC-ACAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGA-AGATAGCAGATCTTG
* * * *
105799445 TCTTCATATATTGG-CGTGAAGTAGATCGAAGGTAGCAGATCCTA
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* *
105799489 TCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * * *
105799532 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAAATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * * *
105799577 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTA
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
105799621 TCTTCCTATATTGATAG-GAAGTGGATCCAAGATA-CAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
* * * *
105799664 TCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
105799709 TC
1 TC
105799711 CCTGTATTTG
Statistics
Matches: 460, Mismatches: 97, Indels: 34
0.78 0.16 0.06
Matches are distributed among these distances:
43 104 0.23
44 257 0.56
45 99 0.22
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (45 bp):
TCTTCCTATATTGGTCGTGAAGTAGATCGAAGATAGCAGATCTTG
Found at i:105799325 original size:132 final size:132
Alignment explanation
Indices: 105799088--105799710 Score: 1088
Period size: 132 Copynumber: 4.7 Consensus size: 132
105799078 CGTAAATAGG
* *
105799088 TCCTATCTTCTTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
105799153 CGAAGTAGATCGA-AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGC
66 CGAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGC
105799217 AGA
130 AGA
105799220 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
**
105799285 CGAAGTAGATCACAGAAAATAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCACAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
105799350 GA
131 GA
105799352 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
105799417 CGAAGTAGATCACAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCACAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
105799482 GA
131 GA
105799484 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* * *
105799549 CGAAGTAGATCGCAGAAAGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCACAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
*
105799614 GG
131 GA
* * * *
105799616 TCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
105799681 TGAAGTAGATCGA-AGAAAGCAGATCTTGTC
66 CGAAGTAGATC-ACAGAAAGCAGATCTTGTC
105799711 CCTGTATTTG
Statistics
Matches: 470, Mismatches: 19, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
131 1 0.00
132 469 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
CGAAGTAGATCACAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
GA
Found at i:105800705 original size:27 final size:26
Alignment explanation
Indices: 105800659--105800712 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
105800649 TTGTTAAAGG
* *
105800659 TGATTTTTTTAGTTTCTTTCTTTTTC
1 TGATTTTGTTAGTTTCTTTCATTTTC
*
105800685 TGATTTTGTTATTATTCTTTCATTTTC
1 TGATTTTGTTAGT-TTCTTTCATTTTC
105800712 T
1 T
105800713 TCTTGCGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.11, C:0.11, G:0.07, T:0.70
Consensus pattern (26 bp):
TGATTTTGTTAGTTTCTTTCATTTTC
Found at i:105801599 original size:25 final size:22
Alignment explanation
Indices: 105801545--105801599 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
105801535 TATTATTTTA
* *
105801545 TGTAAATATTTTCTAAATTTAT
1 TGTATATATTTTCTAAAATTAT
*
105801567 TGTGTATATTTTCTTTAAAATTAT
1 TGTATATATTTTC--TAAAATTAT
105801591 TCGTATATA
1 T-GTATATA
105801600 GTTTGGCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 11 0.42
24 9 0.35
25 6 0.23
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (22 bp):
TGTATATATTTTCTAAAATTAT
Found at i:105806130 original size:2 final size:2
Alignment explanation
Indices: 105806123--105806147 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
105806113 AAGCTTCTCT
105806123 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
105806148 TGCTTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:105825612 original size:19 final size:19
Alignment explanation
Indices: 105825588--105825627 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
105825578 GACAATAAAC
*
105825588 AAAAAAAAGTTAAAAAAAT
1 AAAAAAAAGATAAAAAAAT
* *
105825607 AAAAAAATGATAAAATAAT
1 AAAAAAAAGATAAAAAAAT
105825626 AA
1 AA
105825628 TAATGGTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (19 bp):
AAAAAAAAGATAAAAAAAT
Found at i:105826099 original size:3 final size:3
Alignment explanation
Indices: 105826091--105826301 Score: 87
Period size: 3 Copynumber: 68.7 Consensus size: 3
105826081 ATAATGGTAG
* * * *
105826091 TAA TAA TAA TAA T-A TAA TGA TAA TAAA CAA TAA TAA -AA GGAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA -TAA TAA
* * * * *
105826136 AAA TAA TAG TAA TAA TAA -AGG TATT TAA TAA TAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TA-A TAA TAA TAA TAA TAA TAA TAA
* *
105826182 TAA T-A TAAA TAA TAA TATA TACA TAA AAA TAA TAA TAGT TAGA -AA
1 TAA TAA T-AA TAA TAA TA-A TA-A TAA TAA TAA TAA TA-A TA-A TAA
* * ** *
105826227 TAA -AA -AA TAA TGGAA GTAG TAA TAA CAA TGG TAA TAG TAA TAA -AGA
1 TAA TAA TAA TAA T--AA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* *
105826273 TAA CAG TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
105826302 TATTTAATTC
Statistics
Matches: 157, Mismatches: 34, Indels: 34
0.70 0.15 0.15
Matches are distributed among these distances:
2 13 0.08
3 121 0.77
4 20 0.13
5 2 0.01
6 1 0.01
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:105826113 original size:11 final size:11
Alignment explanation
Indices: 105826093--105826218 Score: 58
Period size: 11 Copynumber: 11.8 Consensus size: 11
105826083 AATGGTAGTA
105826093 ATAATAATAAT
1 ATAATAATAAT
*
105826104 ATAATGATAAT
1 ATAATAATAAT
*
105826115 A-AACAATAAT
1 ATAATAATAAT
** *
105826125 A-AA-AGGAAC
1 ATAATAATAAT
105826134 A-AA-AATAAT
1 ATAATAATAAT
105826143 AGTAATAATAA-
1 A-TAATAATAAT
*
105826154 AGGTATTTAATAAT
1 A--TA-ATAATAAT
105826168 AGTAATAATAAT
1 A-TAATAATAAT
105826180 AATAAT-ATAA-
1 -ATAATAATAAT
105826190 ATAATAAT-AT
1 ATAATAATAAT
105826200 ATACATAA-AA-
1 ATA-ATAATAAT
105826210 ATAATAATA
1 ATAATAATA
105826219 GTTAGAAATA
Statistics
Matches: 92, Mismatches: 11, Indels: 25
0.72 0.09 0.20
Matches are distributed among these distances:
9 20 0.22
10 19 0.21
11 23 0.25
12 19 0.21
13 10 0.11
14 1 0.01
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (11 bp):
ATAATAATAAT
Found at i:105828280 original size:5 final size:5
Alignment explanation
Indices: 105828270--105828317 Score: 53
Period size: 5 Copynumber: 9.0 Consensus size: 5
105828260 ATCCTAAATT
105828270 AATAA AATAA AATAAA AATAAA TAATAA AACT-A AATAA AATAA AATAA
1 AATAA AATAA AAT-AA AAT-AA -AATAA AA-TAA AATAA AATAA AATAA
105828318 TATCTTCTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
4 1 0.03
5 24 0.62
6 11 0.28
7 3 0.08
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:105828299 original size:23 final size:22
Alignment explanation
Indices: 105828264--105828319 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 22
105828254 AGTCTAATCC
105828264 TAAATTAATAAAA-TAAAATAAAAA
1 TAAA-TAATAAAACT-AAAT-AAAA
105828288 TAAATAATAAAACTAAATAAAA
1 TAAATAATAAAACTAAATAAAA
105828310 TAAAATAATA
1 T-AAATAATA
105828320 TCTTCTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.17
23 20 0.67
24 5 0.17
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (22 bp):
TAAATAATAAAACTAAATAAAA
Found at i:105842318 original size:11 final size:11
Alignment explanation
Indices: 105842304--105842351 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
105842294 TTACAACTGA
105842304 AAACCAATCAT
1 AAACCAATCAT
*
105842315 AAA-CAACTCTT
1 AAACCAA-TCAT
105842326 AAACCAATCAT
1 AAACCAATCAT
* *
105842337 AAGCCAATCTT
1 AAACCAATCAT
105842348 AAAC
1 AAAC
105842352 AACACTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
10 3 0.10
11 24 0.80
12 3 0.10
ACGTcount: A:0.50, C:0.27, G:0.02, T:0.21
Consensus pattern (11 bp):
AAACCAATCAT
Found at i:105842320 original size:21 final size:22
Alignment explanation
Indices: 105842296--105842338 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
105842286 CAAGGCTATT
105842296 ACAACT-GAAAACCAATCATAA
1 ACAACTCGAAAACCAATCATAA
**
105842317 ACAACTCTTAAACCAATCATAA
1 ACAACTCGAAAACCAATCATAA
105842339 GCCAATCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.53, C:0.26, G:0.02, T:0.19
Consensus pattern (22 bp):
ACAACTCGAAAACCAATCATAA
Found at i:105842331 original size:22 final size:22
Alignment explanation
Indices: 105842304--105842351 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
105842294 TTACAACTGA
105842304 AAACCAATCATAA-ACAACTCTT
1 AAACCAATCATAAGACAA-TCTT
*
105842326 AAACCAATCATAAGCCAATCTT
1 AAACCAATCATAAGACAATCTT
105842348 AAAC
1 AAAC
105842352 AACACTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.50, C:0.27, G:0.02, T:0.21
Consensus pattern (22 bp):
AAACCAATCATAAGACAATCTT
Found at i:105846906 original size:44 final size:44
Alignment explanation
Indices: 105846778--105847640 Score: 235
Period size: 44 Copynumber: 19.2 Consensus size: 44
105846768 CGCCATCGTC
** ** * **
105846778 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAA
1 GATCTGCTACCTTCGATCTACTTCA-TGCCAATACAGGAAGACAA
* * * * ** * * *
105846823 GATCTG-TATCTTGGATCCACTTCCTATCAATATAGGAAGATAG
1 GATCTGCTACCTTCGATCTACTTCATGCCAATACAGGAAGACAA
* *
105846866 GATCTGCTACCTTCGATTTACTTCATGCCAATACATGAAGACAA
1 GATCTGCTACCTTCGATCTACTTCATGCCAATACAGGAAGACAA
* ** * **
105846910 GATCTGTTTTCTGCGATCTACTTC--GCCACCAGTATGGGAAGACAA
1 GATCTGCTACCTTCGATCTACTTCATGCCA--A-TACAGGAAGACAA
* * * * * * *
105846955 GATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
1 GATCTGCTACCTTCGATCTACTTCATGCCAATACAGGAAGACAA
* *
105846998 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTACCTTCGATCTACTTCATGCCAATACAGGAAGACAA
* ** * * * *
105847042 TATCTGCTTTCTTCGATCTACTTTC-TAACTAATACAAGAAGGCAA
1 GATCTGCTACCTTCGATCTAC-TTCAT-GCCAATACAGGAAGACAA
* * * *
105847087 GATCTGCAATCTTCAATCTA-TTCCACTGCCAGATACAGG--GATAGA
1 GATCTGCTACCTTCGATCTACTT-CA-TGCCA-ATACAGGAAGACA-A
* * ** * * * * * *
105847132 GTTAT-C-GGCTTCAATGTACTCCACTG-TAGTCACAGGGAGTA-AA
1 GATCTGCTACCTTCGATCTACTTCA-TGCCAAT-ACAGGAAG-ACAA
* * * * *
105847175 -ATCTGCCATCTTCGATCTGCTTCGCTGCCTAATACAGGAAGGCAA
1 GATCTGCTACCTTCGATCTACTTC-ATGCC-AATACAGGAAGACAA
* * * * *
105847220 GATCTGCAATCTTCAATCTA-TTCAATCACGCCAATACATGAAGATAA
1 GATCTGCTACCTTCGATCTACTTC-AT---GCCAATACAGGAAGACAA
** **
105847267 GATCTGCTTTCTTCGATCTACTTC--GCCACCAGTATGGGAAGACAA
1 GATCTGCTACCTTCGATCTACTTCATGCCA--A-TACAGGAAGACAA
** * * * *
105847312 GATCTGC-ATCGGATCCACTGCTACCATTCGAT-CTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTA-C-CTTCGA-T-CTA-C-TTC-ATGCCA-AT-A---C-A-G---GAAGACAA
** **
105847371 GATCTGCTTTC-TCGATCTACTT--TGCCACCAATATGGGAAGACAA
1 GATCTGCTACCTTCGATCTACTTCATG---CCAATACAGGAAGACAA
* * * * * * *
105847415 GATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
1 GATCTGCTACCTTCGATCTACTTCATGCCAATACAGGAAGACAA
* *
105847458 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTACCTTCGATCTACTTCATGCCAATACAGGAAGACAA
** * *** **
105847502 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGCTACCTTCGATCTACTTC-ATGCCAATACAGGAAGACAA
* * * * * * *
105847547 GATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
1 GATCTGCTACCTTCGATCTACTTCATGCCAATACAGGAAGACAA
* *
105847590 GATCTGCTA-CTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTACCTTCGATCTACTTCATGCCAATACAGGAAGACAA
105847633 GATCTGCT
1 GATCTGCT
105847641 TTTGCGATCT
Statistics
Matches: 600, Mismatches: 156, Indels: 126
0.68 0.18 0.14
Matches are distributed among these distances:
41 1 0.00
42 16 0.03
43 134 0.22
44 226 0.38
45 113 0.19
46 32 0.05
47 30 0.05
48 9 0.01
49 1 0.00
50 5 0.01
51 2 0.00
52 3 0.00
53 3 0.00
54 3 0.00
55 3 0.00
56 1 0.00
57 3 0.00
59 15 0.03
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
GATCTGCTACCTTCGATCTACTTCATGCCAATACAGGAAGACAA
Found at i:105847020 original size:132 final size:132
Alignment explanation
Indices: 105846778--105847064 Score: 493
Period size: 132 Copynumber: 2.2 Consensus size: 132
105846768 CGCCATCGTC
* *
105846778 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCAC
* * *
105846843 TTCCTATCAATATAGGAAGATAGGATCTGCTACCTTCGATTTACTTCATGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
105846908 AA
131 AA
* * *
105846910 GATCTGTTTTCTGCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCAC
105846975 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
105847040 AA
131 AA
*
105847042 TATCTGCTTTCTTCGATCTACTT
1 GATCTGCTTTCTTCGATCTACTT
105847065 TCTAACTAAT
Statistics
Matches: 144, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 144 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (132 bp):
GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCAC
TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
AA
Found at i:105847088 original size:132 final size:132
Alignment explanation
Indices: 105846778--105847100 Score: 414
Period size: 132 Copynumber: 2.4 Consensus size: 132
105846768 CGCCATCGTC
* * * * *** * *
105846778 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCAACCAATACAAGAAGACAAGATCTGCATCTTCGATCCAC
* * *
105846843 TTCCTATCAATATAGGAAGATAGGATCTGCTACCTTCGATTTACTTCATGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
105846908 AA
131 AA
* * * ***
105846910 GATCTGTTTTCTGCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCAACCAATACAAGAAGACAAGATCTGCATCTTCGATCCAC
105846975 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
105847040 AA
131 AA
* * * * *
105847042 TATCTGCTTTCTTCGATCTACTTTC-TAACTAATACAAGAAGGCAAGATCTGCAATCTTC
1 GATCTGCTTTCTGCGATCTAC-TTCGCAACCAATACAAGAAGACAAGATCTGC-ATCTTC
105847101 AATCTATTCC
Statistics
Matches: 170, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
132 161 0.95
133 9 0.05
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (132 bp):
GATCTGCTTTCTGCGATCTACTTCGCAACCAATACAAGAAGACAAGATCTGCATCTTCGATCCAC
TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
AA
Found at i:105847392 original size:43 final size:43
Alignment explanation
Indices: 105847338--105847712 Score: 329
Period size: 43 Copynumber: 8.7 Consensus size: 43
105847328 ACTGCTACCA
* * *
105847338 TTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
1 TTCGATCTACTTC-CACCAATATAGGAAGACAAGATCTGCTTTC
* *
105847382 -TCGATCTACTTTGCCACCAATATGGGAAGACAAGATCTGC-ATC
1 TTCGATCTAC-TT-CCACCAATATAGGAAGACAAGATCTGCTTTC
* * * **
105847425 TTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACC
1 TTCGATCTACTTCC-ACCAATATAGGAAGACAAGATCTGCTTTC
* * *
105847469 TTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
1 TTCGATCTACTTC-CACCAATATAGGAAGACAAGATCTGCTTTC
* * *
105847513 TGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATC
1 TTCGATCTACTT--CCACCAATATAGGAAGACAAGATCTGCTTTC
* * * *
105847557 TTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGC-TAC
1 TTCGATCTACTTCC-ACCAATATAGGAAGACAAGATCTGCTTTC
* * *
105847600 TTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTT-
1 TTCGATCTACTTC-CACCAATATAGGAAGACAAGATCTGCTTTC
* *
105847643 TGCGATCTACTTCGCCACCAATAT-GG--GACAAGATCTGC-ATC
1 TTCGATCTACTT--CCACCAATATAGGAAGACAAGATCTGCTTTC
* *
105847684 TTTGATCCACTTCCTA-CAATATAGGAAGA
1 TTCGATCTACTTCC-ACCAATATAGGAAGA
105847713 TAGGACTATT
Statistics
Matches: 267, Mismatches: 46, Indels: 38
0.76 0.13 0.11
Matches are distributed among these distances:
39 8 0.03
40 4 0.01
41 21 0.08
42 6 0.02
43 102 0.38
44 100 0.37
45 25 0.09
46 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (43 bp):
TTCGATCTACTTCCACCAATATAGGAAGACAAGATCTGCTTTC
Found at i:105847607 original size:131 final size:132
Alignment explanation
Indices: 105847329--105847717 Score: 702
Period size: 132 Copynumber: 3.0 Consensus size: 132
105847319 ATCGGATCCA
105847329 CTGCTACCATTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT-CGATCTACTT
1 CTGCTACC-TTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTT
*
105847393 TGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
65 CGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
105847458 GAT
130 GAT
105847461 CTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
105847526 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
105847591 AT
131 AT
105847593 CTGCTA-CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTT-TGCGATCTACTTC
1 CTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
*
105847656 GCCACCAATAT-GG--GACAAGATCTGCATCTTTGATCCACTTCCTA-CAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
105847717 A
131 A
105847718 CTATTTACGC
Statistics
Matches: 254, Mismatches: 2, Indels: 8
0.96 0.01 0.03
Matches are distributed among these distances:
126 18 0.07
127 30 0.12
129 2 0.01
130 24 0.09
131 89 0.35
132 91 0.36
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (132 bp):
CTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
AT
Found at i:105862653 original size:17 final size:16
Alignment explanation
Indices: 105862629--105862663 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
105862619 TACATGAATC
* *
105862629 AATTTTTAATTACTAA
1 AATTTTTTATTACCAA
105862645 AATTTTTTATTACCAA
1 AATTTTTTATTACCAA
105862661 AAT
1 AAT
105862664 AGACTTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (16 bp):
AATTTTTTATTACCAA
Found at i:105867832 original size:3 final size:3
Alignment explanation
Indices: 105867804--105868446 Score: 169
Period size: 3 Copynumber: 215.3 Consensus size: 3
105867794 TAAATTAATA
* * *
105867804 TAT TAT TGT TAT CTCT TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
105867850 TAT TAT TAT TAT TAT TAT TAT T-T TGT TAA TAT TAC TAT TAT AAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
105867896 TAT T-T TAT TTT TGT GT-T TATT TACT TAC TGT T-T TGT TAT TAAT TCAT
1 TAT TAT TAT TAT TAT -TAT TA-T TA-T TAT TAT TAT TAT TAT T-AT T-AT
* * * * *
105867943 TAA T-T TAT TAT TAT TAA CA- TAT TAT TAT TCT TAAT GTAT TAT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT
* * * * *
105867988 TAC TAT TAT TTT TAT TTT TAT TAC TAT TAT CAT T-T T-T TAAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT
* * * * *
105868032 TTT TAT TAT TAT TATT TGT TAT T-T AAT ATAT TAT TAT T-G TAT TTT
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* * * ** *
105868077 TAT TAC TAC TAT TAC GGT TAT TAT TAT TAT TAT TAT TA- TCT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
** * * * * * * * * *
105868123 TAT TGC TAT TAT CAT TTT TGT AAT TAC TAT TAC TAT T-G TAT TAT GAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
** *
105868170 TAT TAT TAT TAT T-T T-T TAT CTAT GT-T TAT T-T TCC TAT CAT TCAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT TAT TAT T-AT
*
105868214 CTAT T-T ATATT TCT TAT GTAT T-T ATAT T-T TCAT TAT TAT TA- TAT
1 -TAT TAT -TA-T TAT TAT -TAT TAT -TAT TAT T-AT TAT TAT TAT TAT
* * * * *
105868258 T-T TAGG TAT TA- TAT CTA- TATT TAT GT-T TAGG TAC TAA TAT CAT
1 TAT TA-T TAT TAT TAT -TAT TA-T TAT -TAT TA-T TAT TAT TAT TAT
* * ** * *
105868301 TAT T-T TAC TAT TCT TAT T-T TAT CGTGC TAT TAT TAT TAT CAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT --TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
105868346 TAT TAC TAT TAG CAC TAT TTT TAT TAC TAT TAT T-T AAT ATAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * * * * *
105868391 TTT TAT TAC TAT CAT TAC TAT TAT TAT TA- TAT TGT TAT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
105868438 TA- TAT TAT T
1 TAT TAT TAT T
105868447 GTATTATCTT
Statistics
Matches: 452, Mismatches: 134, Indels: 108
0.65 0.19 0.16
Matches are distributed among these distances:
2 50 0.11
3 348 0.77
4 50 0.11
5 4 0.01
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:105868260 original size:17 final size:18
Alignment explanation
Indices: 105868215--105868260 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
105868205 ATCATTCATC
105868215 TATTTATA-TTTCTTATG
1 TATTTATATTTTCTTATG
105868232 TATTTATATTTTCATTAT-
1 TATTTATATTTTC-TTATG
105868250 TA-TTATATTTT
1 TATTTATATTTT
105868261 AGGTATTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 17 0.63
18 6 0.22
19 4 0.15
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.67
Consensus pattern (18 bp):
TATTTATATTTTCTTATG
Found at i:105868304 original size:26 final size:24
Alignment explanation
Indices: 105868248--105868305 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
105868238 TATTTTCATT
*
105868248 ATTATTATATTTTAGGTATTATATC
1 ATTATT-TATTTTAGGTATAATATC
105868273 -TATATTTATGTTTAGGTACTAATATC
1 AT-TATTTAT-TTTAGGTA-TAATATC
105868299 ATTATTT
1 ATTATTT
105868306 TACTATTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
24 4 0.14
25 12 0.43
26 11 0.39
27 1 0.04
ACGTcount: A:0.31, C:0.05, G:0.09, T:0.55
Consensus pattern (24 bp):
ATTATTTATTTTAGGTATAATATC
Found at i:105872435 original size:9 final size:9
Alignment explanation
Indices: 105872421--105872456 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
105872411 CGCATTTTCT
105872421 TTCATTGCA
1 TTCATTGCA
105872430 TTCATTGCA
1 TTCATTGCA
*
105872439 TCCATTGCA
1 TTCATTGCA
105872448 TTCA-TGCA
1 TTCATTGCA
105872456 T
1 T
105872457 CAGCATTGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 5 0.20
9 20 0.80
ACGTcount: A:0.22, C:0.25, G:0.11, T:0.42
Consensus pattern (9 bp):
TTCATTGCA
Found at i:105880587 original size:43 final size:42
Alignment explanation
Indices: 105880530--105880681 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 42
105880520 ATTTACAGAT
105880530 CTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGC
1 CTTAACC-CCTAAGCAGTAGGGAAACAGATCGAAGACGAA-GGC
* * * * ** **
105880574 CTTAACCCCTAAGCAGTAGGGTAACAG-GCTAAAAATTACAGAT
1 CTTAACCCCTAAGCAGTAGGGAAACAGATC-GAAGACGA-AGGC
*
105880617 CTTAACCCCCTAAGCAGTAGGGAAATAGATCGAAGACGAAAGGC
1 CTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGACG-AAGGC
105880661 CTTAACCCCTAAGCAGTAGGG
1 CTTAACCCCTAAGCAGTAGGG
105880682 TAATAGGCTG
Statistics
Matches: 86, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
42 1 0.01
43 45 0.52
44 38 0.44
45 2 0.02
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (42 bp):
CTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGC
Found at i:105880668 original size:87 final size:87
Alignment explanation
Indices: 105880522--105881052 Score: 635
Period size: 87 Copynumber: 6.1 Consensus size: 87
105880512 ATCGGTGAAT
*
105880522 TTACAGATCTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTT-AACCCCTAA
1 TTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAA
105880586 GCAGTAGGGTAACAGGCTAAAAA
66 GCAGTAGGGTAACAGGCT-AAAA
* *
105880609 TTACAGATCTTAACCCCCTAAGCAGTAGGGAAATAGATCGAAGACGAAAGGCCTT-AACCCCTAA
1 TTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAA
*
105880673 GCAGTAGGGTAATAGGCTGAAAA
66 GCAGTAGGGTAACAGGCT-AAAA
* ** * * * * * *
105880696 TTATAGATCTTGTCTCCCTAAACAATAGTGG-AGCAGATTGAAGACGAATGGCCTTAAACCCCTA
1 TTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAACCCCTA
* * * * *
105880760 AACAGTAGGATAATAGGCTGAAT
65 AGCAGTAGGGTAACAGGCTAAAA
* * *
105880783 TTACAAATCTTAACCCCCTAAGTAGTA-GGAAACAGATCGAAGACGAAGGG-CTTTAACCCCTAA
1 TTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAA
*
105880846 GCAATAGGGTAACAGGCTAAAAA
66 GCAGTAGGGTAACAGGCT-AAAA
** * * * ** *
105880869 TTACAGATCTTGTCTCCCTAAGCAGTAGAGAAACAGATCAAAGGTGACGGGCCTTAAACCCCTAA
1 TTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAA
*
105880934 GCAGTAGGGTAACAGGCTAAAT
66 GCAGTAGGGTAACAGGCTAAAA
* * * *
105880956 TTACGGATCTTAACCCCCTATGCAGTAGGGAAACAGATTGAAGGCGATA-GGCCTTAAACCCCTA
1 TTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGCCTTAAACCCCTA
**
105881020 AGCAGTAGGGTAACAGG-TTGAA
65 AGCAGTAGGGTAACAGGCTAAAA
105881042 TTACAGATCTT
1 TTACAGATCTT
105881053 GTCTCCTTAT
Statistics
Matches: 373, Mismatches: 64, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
85 28 0.08
86 53 0.14
87 236 0.63
88 56 0.15
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (87 bp):
TTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAA
GCAGTAGGGTAACAGGCTAAAA
Found at i:105880687 original size:43 final size:43
Alignment explanation
Indices: 105880530--105881035 Score: 172
Period size: 44 Copynumber: 11.6 Consensus size: 43
105880520 ATTTACAGAT
*
105880530 CTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGC
1 CTTAACC-CCTAAGCAGTAGGGAAACAGATCGAAGACGAAAGGC
* * * * ** * **
105880574 CTTAACCCCTAAGCAGTAGGGTAACAG-GCTAAAAATTACAGAT
1 CTTAACCCCTAAGCAGTAGGGAAACAGATC-GAAGACGAAAGGC
*
105880617 CTTAACCCCCTAAGCAGTAGGGAAATAGATCGAAGACGAAAGGC
1 CTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAAGGC
* * * * ** * **
105880661 CTTAACCCCTAAGCAGTAGGGTAATAG-GCTGAAAATTATAGAT
1 CTTAACCCCTAAGCAGTAGGGAAACAGATC-GAAGACGAAAGGC
** * * * * *
105880704 CTTGTCTCCCTAAACAATAGTGG-AGCAGATTGAAGACGAATGGC
1 CTTAAC-CCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAAGGC
* * * * *
105880748 CTTAAACCCCTAAACAGTA-GGATAATAG-GCTGAATTTAC-AAA--T
1 CTT-AACCCCTAAGCAGTAGGGA-AACAGATC-GAA--GACGAAAGGC
* *
105880791 CTTAACCCCCTAAGTAGTA-GGAAACAGATCGAAGACGAAGGGC
1 CTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAAGGC
* * * * * * ** * **
105880834 TTTAACCCCTAAGCAATAGGGTAACAG-GCTAAAAATTACAGAT
1 CTTAACCCCTAAGCAGTAGGGAAACAGATC-GAAGACGAAAGGC
** * * ** **
105880877 CTTGTCTCCCTAAGCAGTAGAGAAACAGATCAAAGGTGACGGGC
1 CTTAAC-CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAAGGC
* * * *** * *
105880921 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTAA-ATTTACGGAT
1 CTT-AACCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAAGG-C
* * * *
105880964 CTTAACCCCCTATGCAGTAGGGAAACAGATTGAAGGCGATAGGC
1 CTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAAGGC
*
105881008 CTTAAACCCCTAAGCAGTAGGGTAACAG
1 CTT-AACCCCTAAGCAGTAGGGAAACAG
105881036 GTTGAATTAC
Statistics
Matches: 322, Mismatches: 112, Indels: 56
0.66 0.23 0.11
Matches are distributed among these distances:
40 2 0.01
41 2 0.01
42 30 0.09
43 124 0.39
44 150 0.47
45 12 0.04
46 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (43 bp):
CTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAAGGC
Found at i:105880871 original size:173 final size:173
Alignment explanation
Indices: 105880551--105881058 Score: 671
Period size: 173 Copynumber: 2.9 Consensus size: 173
105880541 AAGCAGTAGG
*
105880551 GAAACAGATCGAAGACGAAGGGCCTT-AACCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAG
1 GAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCT-AAATTTACAG
* * *
105880615 ATCTTAACCCCCTAAGCAGTAGGGAAATAGATCGAAGACGAAAGGCCTTAACCCCTAAGCAGTAG
65 ATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCTTTAACCCCTAAGCAGTAG
* * *
105880680 GGTAATAGGCTGAAAATTATAGATCTTGTCTCCCTAAACAATAGT
130 GGTAACAGGCT-AAAATTACAGATCTTGTCTCCCTAAACAATAGA
* * * * * * * * *
105880725 GGAGCAGATTGAAGACGAATGGCCTTAAACCCCTAAACAGTAGGATAATAGGCTGAATTTACAAA
1 GAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGA
* *
105880790 TCTTAACCCCCTAAGTAGTA-GGAAACAGATCGAAGACGAAGGGCTTTAACCCCTAAGCAATAGG
66 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCTTTAACCCCTAAGCAGTAGG
* *
105880854 GTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAGCAGTAGA
131 GTAACAGGCT-AAAATTACAGATCTTGTCTCCCTAAACAATAGA
* ** * *
105880898 GAAACAGATCAAAGGTGACGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACGGA
1 GAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGA
* * * * *
105880963 TCTTAACCCCCTATGCAGTAGGGAAACAGATTGAAGGCGATAGGCCTTAAACCCCTAAGCAGTAG
66 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGCTTTAACCCCTAAGCAGTAG
**
105881028 GGTAACAGG-TTGAATTACAGATCTTGTCTCC
130 GGTAACAGGCTAAAATTACAGATCTTGTCTCC
105881059 TTATGTAGTA
Statistics
Matches: 287, Mismatches: 44, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
173 166 0.58
174 67 0.23
175 54 0.19
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.20
Consensus pattern (173 bp):
GAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGA
TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCTTTAACCCCTAAGCAGTAGG
GTAACAGGCTAAAATTACAGATCTTGTCTCCCTAAACAATAGA
Found at i:105880995 original size:260 final size:261
Alignment explanation
Indices: 105880517--105881052 Score: 731
Period size: 260 Copynumber: 2.1 Consensus size: 261
105880507 CCAAGATCGG
*
105880517 TGAATTTACAGATCTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAACCC
1 TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAACCC
* * *
105880582 CTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAATAGAT
66 CTAAGCAATAGGGTAACAGGCTAAAAATTACAGATCTTAACCCCCTAAGCAGTAGAGAAACAGAT
* * * ** *
105880647 CGAAGACGAAAGGCCTTAACCCCTAAGCAGTAGGGTAATAGGCTGAAAATTATAGATCTTGTCTC
131 CAAAGACGAAAGGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTAACCC
* *
105880712 CCTAAACAATAGTGGAGCAGATTGAAGACGA-ATGGCCTTAAACCCCTAAACAGTAGGATAATAG
196 CCTAAACAATAGTGGAACAGATTGAAGACGATA-GGCCTTAAACCCCTAAACAGTAGGATAACAG
105880776 GC
260 GC
* * *
105880778 TGAATTTACAAATCTTAACCCCCTAAGTAGTA-GGAAACAGATCGAAGACGAAGGGCTTTAACCC
1 TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAACCC
** *
105880842 CTAAGCAATAGGGTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAGCAGTAGAGAAACAGAT
66 CTAAGCAATAGGGTAACAGGCTAAAAATTACAGATCTTAACCCCCTAAGCAGTAGAGAAACAGAT
** ** * *
105880907 CAAAGGTGACGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCT-AAATTTACGGATCTTAACC
131 CAAAGACGAAAGGCCTT-AACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTAACC
** * * * *
105880971 CCCTATGCAGTAG-GGAAACAGATTGAAGGCGATAGGCCTTAAACCCCTAAGCAGTAGGGTAACA
195 CCCTAAACAATAGTGG-AACAGATTGAAGACGATAGGCCTTAAACCCCTAAACAGTAGGATAACA
*
105881035 GGT
259 GGC
105881038 TGAA-TTACAGATCTT
1 TGAATTTACAGATCTT
105881053 GTCTCCTTAT
Statistics
Matches: 240, Mismatches: 32, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
259 12 0.05
260 172 0.72
261 56 0.23
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (261 bp):
TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAACCC
CTAAGCAATAGGGTAACAGGCTAAAAATTACAGATCTTAACCCCCTAAGCAGTAGAGAAACAGAT
CAAAGACGAAAGGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTAACCC
CCTAAACAATAGTGGAACAGATTGAAGACGATAGGCCTTAAACCCCTAAACAGTAGGATAACAGG
C
Found at i:105881098 original size:173 final size:168
Alignment explanation
Indices: 105880538--105881102 Score: 621
Period size: 173 Copynumber: 3.3 Consensus size: 168
105880528 ATCTTAACCT
* *
105880538 CCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAACCCCTAAGCAGTAGGGTAACAGG
1 CCTAAGCAGTAGTGG-AGCAGATCGAAGATGAA--GCCTTAACCCCTAAGCAGTAGGGTAACAGG
* *
105880602 CTAAAAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAATAGATCGAAGACGAAAGGCCTTAAC
63 CT-AAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACG-AAGGCCTTAAC
* * *
105880667 CCCTAAGCAGTAGGGTAATAGGCTGAAAATTATAGATCTTGTCTC
126 CCCTAAGCAGTAGGGTAACAGGTTG--AATTACAGATCTTGTCTC
* * * * * * *
105880712 CCTAAACAATAGTGGAGCAGATTGAAGACGAATGGCCTTAAACCCCTAAACAGTAGGATAATAGG
1 CCTAAGCAGTAGTGGAGCAGATCGAAGATGAA--GCCTT-AACCCCTAAGCAGTAGGGTAACAGG
* * * *
105880777 CTGAATTTACAAATCTTAACCCCCTAAGTAGTA-GGAAACAGATCGAAGACGAAGGGCTTTAACC
63 CTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAA-GGCCTTAACC
* **
105880841 CCTAAGCAATAGGGTAACAGGCTAAAAATTACAGATCTTGTCTC
127 CCTAAGCAGTAGGGTAACAGG-T-TGAATTACAGATCTTGTCTC
* * * * * *
105880885 CCTAAGCAGTAGAGAAACAGATCAAAGGTGACGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGG
1 CCTAAGCAGTAGTGGAGCAGATCGAAGATGA--AGCCTT-AACCCCTAAGCAGTAGGGTAACAGG
* * * *
105880950 CTAAATTTACGGATCTTAACCCCCTATGCAGTAGGGAAACAGATTGAAGGCGATAGGCCTTAAAC
63 CTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGCCTT-AAC
105881015 CCCTAAGCAGTAGGGTAACAGGTTGAATTACAGATCTTGTCTC
126 CCCTAAGCAGTAGGGTAACAGGTTGAATTACAGATCTTGTCTC
* * * *
105881058 CTTATGTAGTAGTGGAGCGGATCGAAGATAGTAAGCCTTAACCCC
1 CCTAAGCAGTAGTGGAGCAGATCGAAGAT-G-AAGCCTTAACCCC
105881103 ATAGTAACAG
Statistics
Matches: 325, Mismatches: 54, Indels: 26
0.80 0.13 0.06
Matches are distributed among these distances:
172 8 0.02
173 183 0.56
174 82 0.25
175 52 0.16
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (168 bp):
CCTAAGCAGTAGTGGAGCAGATCGAAGATGAAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTA
AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGCCTTAACCCCTA
AGCAGTAGGGTAACAGGTTGAATTACAGATCTTGTCTC
Found at i:105881297 original size:88 final size:88
Alignment explanation
Indices: 105881122--105881290 Score: 230
Period size: 88 Copynumber: 1.9 Consensus size: 88
105881112 GGCTAGAATC
* * * * *
105881122 TACAAATCTCTTCTCCCTGAAGTGGCACTGGAGAGGGTCAAAGCCACCATTCGTATCTCCTTGAA
1 TACAAATCTCTTCTCCCTGAAATAGCACTAGAGAGGGTCAAAGCCACAATTCGTAGCTCCTTGAA
*
105881187 GTTCTAGCGGAGTAGATCGAAGT
66 GTTCTAGCGGAATAGATCGAAGT
* * * ** *
105881210 TACAAATTTCTTCTTCCTGAAATAGCACTAGAGAGGTTTGAAGCCACAATTCGTAGCTCTTTGAA
1 TACAAATCTCTTCTCCCTGAAATAGCACTAGAGAGGGTCAAAGCCACAATTCGTAGCTCCTTGAA
105881275 GTTCTAGCGGAATAGA
66 GTTCTAGCGGAATAGA
105881291 GTGAAGTCAC
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
88 69 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (88 bp):
TACAAATCTCTTCTCCCTGAAATAGCACTAGAGAGGGTCAAAGCCACAATTCGTAGCTCCTTGAA
GTTCTAGCGGAATAGATCGAAGT
Found at i:105881317 original size:88 final size:88
Alignment explanation
Indices: 105881123--105881318 Score: 207
Period size: 88 Copynumber: 2.2 Consensus size: 88
105881113 GCTAGAATCT
* * * * * * *
105881123 ACAAATCTCTTCTCCCTGAAGTGGCACTGGAGAGGGTCAAAGCCACCATTCGTATCTCCTTGAAG
1 ACAAATTTCATCTCCCTGAAATAGCACTAGAGAGGGTCAAAGCCACAATTCGTAGCTCCTTGAAG
* *
105881188 TTCTAGCGGAGTAGATCGAAGTT
66 TTCTAGCGGAATAGATCGAAGTC
* * * ** *
105881211 ACAAATTTCTTCTTCCTGAAATAGCACTAGAGAGGTTTGAAGCCACAATTCGTAGCTCTTTGAAG
1 ACAAATTTCATCTCCCTGAAATAGCACTAGAGAGGGTCAAAGCCACAATTCGTAGCTCCTTGAAG
105881276 TTCTAGCGGAATAGAGT-GAAGTC
66 TTCTAGCGGAATAGA-TCGAAGTC
* *
105881299 ACTAGTCTT-ATCTCCCTGAA
1 ACAAAT-TTCATCTCCCTGAA
105881319 GTTGCAATGG
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
88 86 0.97
89 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (88 bp):
ACAAATTTCATCTCCCTGAAATAGCACTAGAGAGGGTCAAAGCCACAATTCGTAGCTCCTTGAAG
TTCTAGCGGAATAGATCGAAGTC
Found at i:105886754 original size:18 final size:18
Alignment explanation
Indices: 105886733--105886799 Score: 73
Period size: 18 Copynumber: 3.8 Consensus size: 18
105886723 TAATGAAAAC
105886733 GATAATAATAATAATGTT
1 GATAATAATAATAATGTT
* *
105886751 GATAATAATAATAGTGGT
1 GATAATAATAATAATGTT
* * *
105886769 GGTAA-AACAATAATATT
1 GATAATAATAATAATGTT
*
105886786 AATAATAATAATAA
1 GATAATAATAATAA
105886800 AAGTAGTAAT
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
17 11 0.29
18 27 0.71
ACGTcount: A:0.54, C:0.01, G:0.12, T:0.33
Consensus pattern (18 bp):
GATAATAATAATAATGTT
Found at i:105886901 original size:3 final size:3
Alignment explanation
Indices: 105886777--105886883 Score: 51
Period size: 3 Copynumber: 36.0 Consensus size: 3
105886767 GTGGTAAAAC
* * * * *
105886777 AAT AAT ATT AAT AAT AAT AAT AA- AAGT AGT AAT AAG AGT ATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT
* * * * * *
105886822 ATT TAT ATT AAT AAT AAT GAT AAT AGT AAT AGT AA- AA- AAGT GAA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T -AAT
*
105886866 AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT
105886884 GGTAAATACA
Statistics
Matches: 75, Mismatches: 23, Indels: 12
0.68 0.21 0.11
Matches are distributed among these distances:
2 8 0.11
3 64 0.85
4 1 0.01
5 2 0.03
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:105887077 original size:3 final size:3
Alignment explanation
Indices: 105887071--105887377 Score: 76
Period size: 3 Copynumber: 102.3 Consensus size: 3
105887061 AAAGGAAAAT
* * * *
105887071 ATA ATA ACA ATA ATA GTA A-A AGA TATA ATA GCATA ATA AT- ATG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA --ATA ATA ATA ATA ATA
* * * * * ** * *
105887117 GTA ATA GTA ACA AT- ATA ACA ATA ATA GTA ACG ATA GTA ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
105887164 AT- ATA TTAA ATA ATA GTA ATA AAA ATA GTG CTA ATA GTA ATA ATA
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*** * * *
105887209 GGG ATG ATA ATA ATA ATA ATA ATA ATA ATAA ATA AGA ATA CTA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA
* * * * * * *
105887254 CTA TTA AGTT ACA ATGA A-A ATA ATA ATA ATG ATG AT- ATA TTAA ATA
1 ATA ATA A-TA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* * *
105887300 ATA ATA GTA A-A ATA ATA AGTA ACA ATA ATA A-A GT- ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
105887343 GTG ATG AGA ATA ATA ACA AGTG ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA A
105887378 CAGTAACAAT
Statistics
Matches: 211, Mismatches: 73, Indels: 40
0.65 0.23 0.12
Matches are distributed among these distances:
2 17 0.08
3 174 0.82
4 17 0.08
5 3 0.01
ACGTcount: A:0.57, C:0.04, G:0.10, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:105887167 original size:35 final size:35
Alignment explanation
Indices: 105887113--105887182 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
105887103 ATAATAATAT
**
105887113 GATAGTAATAGTAACAATATA-ACAATAATAGTAAC
1 GATAGTAATAAAAACAATATATA-AATAATAGTAAC
*
105887148 GATAGTAATAAAAATAATATATTAAATAATAGTAA
1 GATAGTAATAAAAACAATATA-TAAATAATAGTAA
105887183 TAAAAATAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
35 18 0.60
36 11 0.37
37 1 0.03
ACGTcount: A:0.57, C:0.04, G:0.10, T:0.29
Consensus pattern (35 bp):
GATAGTAATAAAAACAATATATAAATAATAGTAAC
Found at i:105887325 original size:57 final size:55
Alignment explanation
Indices: 105887212--105887342 Score: 129
Period size: 57 Copynumber: 2.3 Consensus size: 55
105887202 AATAATAGGG
* ** * *
105887212 ATGATAATAATAATAATAATAATAATAAATAAGAATACTAATCTATTAAGTTACA
1 ATGAAAATAATAATAATAATAATAATAAATAAGAATACTAAAATAATAAGTAACA
* * * *
105887267 ATGAAAATAATAATAATGATGATATATTAAATAATAATAGTAAAATAATAAGTAACA
1 ATGAAAATAATAATAATAAT-A-ATAATAAATAAGAATACTAAAATAATAAGTAACA
*
105887324 ATAATAAAGT-ATAATAATA
1 ATGA-AAA-TAATAATAATA
105887343 GTGATGAGAA
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
55 18 0.30
56 1 0.02
57 30 0.49
58 11 0.18
59 1 0.02
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (55 bp):
ATGAAAATAATAATAATAATAATAATAAATAAGAATACTAAAATAATAAGTAACA
Found at i:105887339 original size:13 final size:13
Alignment explanation
Indices: 105887295--105887342 Score: 62
Period size: 13 Copynumber: 3.6 Consensus size: 13
105887285 ATGATATATT
105887295 AAATAATAATAGTA
1 AAATAATAA-AGTA
105887309 AAATAAT-AAGTA
1 AAATAATAAAGTA
105887321 ACAATAATAAAGTA
1 A-AATAATAAAGTA
*
105887335 TAATAATA
1 AAATAATA
105887343 GTGATGAGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
12 5 0.16
13 14 0.45
14 12 0.39
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (13 bp):
AAATAATAAAGTA
Found at i:105887366 original size:19 final size:19
Alignment explanation
Indices: 105887342--105887379 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
105887332 GTATAATAAT
*
105887342 AGTGATGAGAATAATAACA
1 AGTGATAAGAATAATAACA
*
105887361 AGTGATAATAATAATAACA
1 AGTGATAAGAATAATAACA
105887380 GTAACAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.55, C:0.05, G:0.16, T:0.24
Consensus pattern (19 bp):
AGTGATAAGAATAATAACA
Found at i:105887556 original size:22 final size:22
Alignment explanation
Indices: 105887531--105887588 Score: 57
Period size: 25 Copynumber: 2.5 Consensus size: 22
105887521 ATAGAAGTGG
105887531 TAATAAATAAAAAATAC-AATAA
1 TAATAAATAAAAAA-ACAAATAA
*
105887553 TAATAATATATTAAACAACAAATAA
1 TAATAA-ATA--AAAAAACAAATAA
105887578 TAAT-AATAAAA
1 TAATAAATAAAA
105887589 TGATGATAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
21 3 0.10
22 6 0.19
23 6 0.19
24 3 0.10
25 13 0.42
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (22 bp):
TAATAAATAAAAAAACAAATAA
Found at i:105888402 original size:5 final size:5
Alignment explanation
Indices: 105888384--105888418 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
105888374 TCGAAAATAG
105888384 GAAAA GAAAA -AAAA GAAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA G-AAAA GAAAA GAAAA GAAAA
105888419 CCTTAGCCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.14
5 19 0.68
6 5 0.18
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:105888403 original size:15 final size:16
Alignment explanation
Indices: 105888385--105888418 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
105888375 CGAAAATAGG
105888385 AAAAGAAAA-AAAAGA
1 AAAAGAAAAGAAAAGA
105888400 AAAAGAAAAGAAAAGA
1 AAAAGAAAAGAAAAGA
105888416 AAA
1 AAA
105888419 CCTTAGCCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAGAAAAGA
Found at i:105889986 original size:39 final size:42
Alignment explanation
Indices: 105889876--105889988 Score: 119
Period size: 44 Copynumber: 2.7 Consensus size: 42
105889866 CTACGTTTGG
105889876 TTGGTTGTAATAGAATGGA-GTTGTAATAAGTAATTCAACTGT
1 TTGGTTG-AATAGAATGGATGTTGTAATAAGTAATTCAACTGT
* *
105889918 TTGGTTGAATAGAATGGAATAGAACTGTAATAA-T-ATTCTTA-TGT
1 TTGGTTGAATAGAATGG-AT-G--TTGTAATAAGTAATTC-AACTGT
105889962 TTGGTTGAATAGAAT-GATGTTGTAATA
1 TTGGTTGAATAGAATGGATGTTGTAATA
105889989 GCATAAGAAA
Statistics
Matches: 62, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
39 7 0.11
41 11 0.18
42 10 0.16
43 1 0.02
44 23 0.37
45 2 0.03
46 8 0.13
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.39
Consensus pattern (42 bp):
TTGGTTGAATAGAATGGATGTTGTAATAAGTAATTCAACTGT
Found at i:105890106 original size:14 final size:14
Alignment explanation
Indices: 105890070--105890110 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
105890060 GTTATTAAAT
*
105890070 TTTAAT-AAAATTA
1 TTTAATAAAAATAA
*
105890083 -TTATTAAAAATAA
1 TTTAATAAAAATAA
105890096 TTTAATAAAAATAA
1 TTTAATAAAAATAA
105890110 T
1 T
105890111 AAATAGTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 4 0.17
13 6 0.26
14 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTAATAAAAATAA
Found at i:105890141 original size:58 final size:55
Alignment explanation
Indices: 105890068--105890202 Score: 180
Period size: 58 Copynumber: 2.4 Consensus size: 55
105890058 TTGTTATTAA
* * *
105890068 ATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAAATAGTTTAACCAT
1 ATTTTAATATAATTATTATTAAAAATAATTTAATAAAAA-AAT--ATAATTTAACAAT
* * *
105890126 ATTTTAACATAATTATTATTAAATATAATTTAATAAAAAAATATAATTTAATAAT
1 ATTTTAATATAATTATTATTAAAAATAATTTAATAAAAAAATATAATTTAACAAT
105890181 ATTCTTAATATAATTATTATTA
1 ATT-TTAATATAATTATTATTA
105890203 TATGAATTAA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
55 13 0.19
56 17 0.25
57 3 0.04
58 36 0.52
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (55 bp):
ATTTTAATATAATTATTATTAAAAATAATTTAATAAAAAAATATAATTTAACAAT
Found at i:105900239 original size:44 final size:44
Alignment explanation
Indices: 105900186--105900284 Score: 103
Period size: 44 Copynumber: 2.2 Consensus size: 44
105900176 TTTTAATCCG
*
105900186 CTCCACTGTAA-CTTCAGAGAGATAGGAT-TACTAGCTTCAATCTA
1 CTCCACTGTAATC-TCAGAGAGATAAGATCT-CTAGCTTCAATCTA
* * * * *
105900230 CTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATATG
1 CTCCACTGTAATCTCAGAGAGATAAGATCTCTAGCTTCAATCTA
*
105900274 TTCCACTGTAA
1 CTCCACTGTAA
105900285 CCGAGAGAGG
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
44 43 0.96
45 2 0.04
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
CTCCACTGTAATCTCAGAGAGATAAGATCTCTAGCTTCAATCTA
Found at i:105900342 original size:44 final size:44
Alignment explanation
Indices: 105900279--105900726 Score: 147
Period size: 44 Copynumber: 10.2 Consensus size: 44
105900269 ATATGTTCCA
* *
105900279 CTGT-AACCGAGAGAGGCAAGATTTGTGTCTTCGATCTGCTTCG
1 CTGTCAACCAAGAGAGGCAAGATTTGTGTCTTCAATCTGCTTCG
* * * * * **
105900322 CTGTCAAGGCAAGA-AGGCAAGATCTGTTATCTTCAACCAGCTTTA
1 CTGTCAA-CCAAGAGAGGCAAGATTTG-TGTCTTCAATCTGCTTCG
* * *
105900367 CT-ACAACCGAGAGAGGCAAGGTTTGTGTCTTCAATCTGCTTCG
1 CTGTCAACCAAGAGAGGCAAGATTTGTGTCTTCAATCTGCTTCG
** * * * * * * *
105900410 CTGTCAACGTAG-GAAGGCAATATCTGTTATCTTTAGTTTGCTCCG
1 CTGTCAACCAAGAG-AGGCAAGATTTG-TGTCTTCAATCTGCTTCG
* * * * *
105900455 CTGTCATTA-CAGGA-AGGCAAAATCTTTTGTCTTCAACCAGC-TC-
1 CTGTCA--ACCAAGAGAGGCAAGAT-TTGTGTCTTCAATCTGCTTCG
** * * * * *
105900498 CATCACAACCGAGAGAAGAAAGGTTTGTGTCTTCGATCTGCTTCG
1 C-TGTCAACCAAGAGAGGCAAGATTTGTGTCTTCAATCTGCTTCG
* * * *
105900543 CTGTCAATGCAGGA-AGGCAAGATCTAT-TGTCTTCAACCAGC-TC-
1 CTGTCAA-CCAAGAGAGGCAAGAT-T-TGTGTCTTCAATCTGCTTCG
** * * * *
105900586 CATCACAACCGAGAGAGGAAATATTTGTGTCTTCGATCTGCTTCG
1 C-TGTCAACCAAGAGAGGCAAGATTTGTGTCTTCAATCTGCTTCG
* * * * *
105900631 CTGTCAATGCAGGA-AAGCAAGATCTAT-TGTCTTCAACCAGC-TC-
1 CTGTCAA-CCAAGAGAGGCAAGAT-T-TGTGTCTTCAATCTGCTTCG
** * * *
105900674 CATCACAACCGAGAGAGGAAATG-TTTGTGTCTTCGATCTGCTTCG
1 C-TGTCAACCAAGAGAGGCAA-GATTTGTGTCTTCAATCTGCTTCG
105900719 CTGTCAAC
1 CTGTCAAC
105900727 GTAGGAAGGC
Statistics
Matches: 273, Mismatches: 99, Indels: 65
0.62 0.23 0.15
Matches are distributed among these distances:
42 3 0.01
43 73 0.27
44 105 0.38
45 87 0.32
46 4 0.01
47 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (44 bp):
CTGTCAACCAAGAGAGGCAAGATTTGTGTCTTCAATCTGCTTCG
Found at i:105900586 original size:133 final size:133
Alignment explanation
Indices: 105900334--105900586 Score: 328
Period size: 133 Copynumber: 1.9 Consensus size: 133
105900324 GTCAAGGCAA
* ** * *
105900334 GAAGGCAAGATCTGTTATCTTCAACCAGCTTTACTACAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAAATCTGTTATCTTCAACCAGCTCCACTACAACCGAGAGAAGAAAGGTTTGTGTCTTC
* * * * ****
105900399 AATCTGCTTCGCTGTCAACGTAGGAAGGCAATATCTGTTATCTTTAGTTTGCTCCGCTGTCATTA
66 AATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTATTATCTTCAACCAGCTCCGCTGTCATTA
105900464 CAG
131 CAG
* *
105900467 GAAGGCAAAATCTTTTGTCTTCAACCAGCTCCA-TCACAACCGAGAGAAGAAAGGTTTGTGTCTT
1 GAAGGCAAAATCTGTTATCTTCAACCAGCTCCACT-ACAACCGAGAGAAGAAAGGTTTGTGTCTT
* * *
105900531 CGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCC
65 CAATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTATTATCTTCAACCAGCTCC
105900587 ATCACAACCG
Statistics
Matches: 101, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
132 1 0.01
133 100 0.99
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (133 bp):
GAAGGCAAAATCTGTTATCTTCAACCAGCTCCACTACAACCGAGAGAAGAAAGGTTTGTGTCTTC
AATCTGCTTCGCTGTCAACGCAGGAAGGCAAGATCTATTATCTTCAACCAGCTCCGCTGTCATTA
CAG
Found at i:105900619 original size:43 final size:43
Alignment explanation
Indices: 105900570--105900707 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 43
105900560 CAAGATCTAT
105900570 TGTCTTCAACCAGCTCCATCACAACCGAGAGAGGAAATATTTG
1 TGTCTTCAACCAGCTCCATCACAACCGAGAGAGGAAATATTTG
* * * ** * * * * *
105900613 TGTCTTCGATCTGCTTCGC-TGTCAA-TGCAGGAAAGCAAGATCTAT-
1 TGTCTTCAACCAGC-TC-CATCACAACCG-A-GAGAGGAA-ATATTTG
*
105900658 TGTCTTCAACCAGCTCCATCACAACCGAGAGAGGAAATGTTTG
1 TGTCTTCAACCAGCTCCATCACAACCGAGAGAGGAAATATTTG
105900701 TGTCTTC
1 TGTCTTC
105900708 GATCTGCTTC
Statistics
Matches: 67, Mismatches: 20, Indels: 16
0.65 0.19 0.16
Matches are distributed among these distances:
42 4 0.06
43 26 0.39
44 14 0.21
45 19 0.28
46 4 0.06
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (43 bp):
TGTCTTCAACCAGCTCCATCACAACCGAGAGAGGAAATATTTG
Found at i:105900762 original size:88 final size:88
Alignment explanation
Indices: 105900448--105900743 Score: 484
Period size: 88 Copynumber: 3.4 Consensus size: 88
105900438 ATCTTTAGTT
* * * * *
105900448 TGCTCCGCTGTCATTACAGGAAGGCAAAATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCATCACAACCGAGAG
* *
105900513 AAGAAAGGTTTGTGTCTTCGATC
66 AGGAAATGTTTGTGTCTTCGATC
105900536 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCATCACAACCGAGAG
*
105900601 AGGAAATATTTGTGTCTTCGATC
66 AGGAAATGTTTGTGTCTTCGATC
*
105900624 TGCTTCGCTGTCAATGCAGGAAAGCAAGATCTATTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCATCACAACCGAGAG
105900689 AGGAAATGTTTGTGTCTTCGATC
66 AGGAAATGTTTGTGTCTTCGATC
* * *
105900712 TGCTTCGCTGTCAACGTAGGAAGGCAATATCT
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
105900744 GTTATCTTTA
Statistics
Matches: 194, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 194 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (88 bp):
TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCATCACAACCGAGAG
AGGAAATGTTTGTGTCTTCGATC
Found at i:105904753 original size:19 final size:20
Alignment explanation
Indices: 105904724--105904772 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
105904714 CACTTCGTGA
* *
105904724 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAGATGCATG
*
105904743 CAATGTAATGCAGATGCATG
1 AAATGTAATGCAGATGCATG
105904763 AAATG-AATGC
1 AAATGTAATGC
105904773 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAGATGCATG
Found at i:105916733 original size:2 final size:2
Alignment explanation
Indices: 105916726--105916754 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
105916716 CAAACTTAAA
105916726 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
105916755 AGTTTTTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:105917112 original size:21 final size:20
Alignment explanation
Indices: 105917067--105917112 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
105917057 ATTAAAGTTA
105917067 TAAAAATATTAAATTTTAAT
1 TAAAAATATTAAATTTTAAT
* *
105917087 AAAAAATATCTAAATTTTATT
1 TAAAAATAT-TAAATTTTAAT
105917108 TAAAA
1 TAAAA
105917113 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAAAATATTAAATTTTAAT
Found at i:105917149 original size:20 final size:20
Alignment explanation
Indices: 105917124--105917176 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
105917114 TAAAAAATAG
* *
105917124 AAAAATCATAAAAATTTTAT
1 AAAAATCGTAAAAATTTCAT
*
105917144 AAAAATTGT-AAAATTTCAT
1 AAAAATCGTAAAAATTTCAT
*
105917163 GAAAATCGTAAAAA
1 AAAAATCGTAAAAA
105917177 ATTATTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (20 bp):
AAAAATCGTAAAAATTTCAT
Found at i:105917176 original size:29 final size:28
Alignment explanation
Indices: 105917144--105917213 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
105917134 AAAATTTTAT
*
105917144 AAAAATTGTAAAATTTCATGAAAATCGTA
1 AAAAATTATAAAATTTCAT-AAAATCGTA
* * *
105917173 AAAAATTATTAAATTTTATAAAGTCGTA
1 AAAAATTATAAAATTTCATAAAATCGTA
105917201 AAAAATTATAAAA
1 AAAAATTATAAAA
105917214 AAATGTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 20 0.56
29 16 0.44
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (28 bp):
AAAAATTATAAAATTTCATAAAATCGTA
Found at i:105917278 original size:20 final size:20
Alignment explanation
Indices: 105917253--105917307 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 20
105917243 TAAAAGAAGC
*
105917253 ATTTTATAATTTTTCCATAA
1 ATTTTATAATTTTTACATAA
* * *
105917273 ATTTTATTGATTTTTATATAT
1 ATTTTA-TAATTTTTACATAA
*
105917294 ATTTTTTAATTTTT
1 ATTTTATAATTTTT
105917308 GCTACATGTC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (20 bp):
ATTTTATAATTTTTACATAA
Found at i:105917493 original size:10 final size:9
Alignment explanation
Indices: 105917455--105917496 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
105917445 AATTTTACAA
105917455 TTTTTAATT
1 TTTTTAATT
*
105917464 TTTTCTATTT
1 TTTT-TAATT
105917474 TTTTTAA-T
1 TTTTTAATT
*
105917482 TTTTTAATA
1 TTTTTAATT
105917491 TTTTTA
1 TTTTTA
105917497 TTATAATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 8 0.29
9 12 0.43
10 8 0.29
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTAATT
Found at i:105917494 original size:19 final size:19
Alignment explanation
Indices: 105917455--105917495 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
105917445 AATTTTACAA
*
105917455 TTTTTAATTTTTTCTATTT
1 TTTTTAATTTTTTATATTT
105917474 TTTTTAATTTTTTAATATTT
1 TTTTTAATTTTTT-ATATTT
105917494 TT
1 TT
105917496 ATTATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTAATTTTTTATATTT
Found at i:105918392 original size:2 final size:2
Alignment explanation
Indices: 105918385--105918419 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
105918375 GCATGTTTGT
*
105918385 TA TA TA TA TA TA TA TA TA AA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
105918420 AATGTAGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:105923891 original size:11 final size:11
Alignment explanation
Indices: 105923875--105923932 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
105923865 CTTTATATAC
105923875 TAATAAAATAA
1 TAATAAAATAA
105923886 TAATAAAATAA
1 TAATAAAATAA
**
105923897 TAA-AATATATCT
1 TAATAA-A-ATAA
* *
105923909 TATTAAAATAT
1 TAATAAAATAA
105923920 TAATAAAATAA
1 TAATAAAATAA
105923931 TA
1 TA
105923933 TTTATCTAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
10 2 0.05
11 29 0.76
12 5 0.13
13 2 0.05
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:105923939 original size:31 final size:32
Alignment explanation
Indices: 105923868--105923959 Score: 93
Period size: 34 Copynumber: 2.9 Consensus size: 32
105923858 TTTCTTTCTT
*
105923868 TATATACTAA-TAAAATAATAATAAAATAATAAAA
1 TATAT-CTAATTAAAATATTAATAAAATAAT--AA
*
105923902 TATATCTTATTAAAATATTAATAAAATAAT-A
1 TATATCTAATTAAAATATTAATAAAATAATAA
*
105923933 TTTATCTAATT-AAATAATT-ATAAAATA
1 TATATCTAATTAAAAT-ATTAATAAAATA
105923960 TCAAAATATC
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
30 12 0.23
31 13 0.25
33 3 0.06
34 24 0.46
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (32 bp):
TATATCTAATTAAAATATTAATAAAATAATAA
Found at i:105933428 original size:18 final size:17
Alignment explanation
Indices: 105933400--105933433 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
105933390 GACCTTAGCC
105933400 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
105933417 CATTATCAGAATTAGAA
1 CATTA-CAGAATAAGAA
105933434 CCAAAATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:105933476 original size:6 final size:6
Alignment explanation
Indices: 105933421--105933512 Score: 55
Period size: 6 Copynumber: 15.3 Consensus size: 6
105933411 AAGAAACATT
* * * * * * *
105933421 ATCAGA ATTAGA ACCAAA ATGAGA ATCAAA ATCAAA ATCAG- GTGACAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
105933470 ATTAGA ATCAGA ATCAGT AT-AGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCAG-A ATCAGA ATCAGA ATCAGA AT
105933513 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
5 5 0.08
6 55 0.86
7 3 0.05
8 1 0.02
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:105933939 original size:20 final size:20
Alignment explanation
Indices: 105933910--105933950 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
105933900 CGGGTCTATA
105933910 ATCGACACGAAGT-CCACAAT
1 ATCGACACGAA-TCCCACAAT
*
105933930 ATCGATACGAATCCCACAAT
1 ATCGACACGAATCCCACAAT
105933950 A
1 A
105933951 ATAGCACACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.41, C:0.29, G:0.12, T:0.17
Consensus pattern (20 bp):
ATCGACACGAATCCCACAAT
Found at i:105934040 original size:27 final size:26
Alignment explanation
Indices: 105934001--105934083 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
105933991 TCGATCGGTC
* *
105934001 AACAGATATTGTGACAGAGTCACCAT
1 AACAGATATTGTGACAGAGCCACCAG
* *
105934027 ATACAGATATTGTGGCAGAGCCTCCAG
1 A-ACAGATATTGTGACAGAGCCACCAG
* *
105934054 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGACAGAGCCACCAG
105934081 AAC
1 AAC
105934084 GCTTCCTCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAG
Found at i:105934340 original size:27 final size:27
Alignment explanation
Indices: 105934310--105934448 Score: 179
Period size: 27 Copynumber: 5.1 Consensus size: 27
105934300 GCAAAATGGA
* * *
105934310 AATTTTACCCCACAAGGGTATCTCGGT
1 AATTCTACCCTACAAGGGTATTTCGGT
* *
105934337 AATTCTACCCTACAGGGGTATTTTGGT
1 AATTCTACCCTACAAGGGTATTTCGGT
* *
105934364 AATTCTACCCTGCAGGGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCGGT
*
105934391 AATTCTACCCTACAAGGGTATTTCGAT
1 AATTCTACCCTACAAGGGTATTTCGGT
* * *
105934418 AATTCTACCCTATAGGGGTATTTCAGT
1 AATTCTACCCTACAAGGGTATTTCGGT
105934445 AATT
1 AATT
105934449 TCACAATCGA
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
AATTCTACCCTACAAGGGTATTTCGGT
Found at i:105934483 original size:27 final size:27
Alignment explanation
Indices: 105934453--105934649 Score: 195
Period size: 27 Copynumber: 7.3 Consensus size: 27
105934443 GTAATTTCAC
*
105934453 AATCGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAATGATAATTCTGTA
*
105934480 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAATGATAATTCTGTA
* * *
105934507 ACTCAAGGGTAAAA-CAGTAATTCTGTA
1 AATCGAGGGTAAAATGA-TAATTCTGTA
** * * *
105934534 AATAAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGATAATTCTGTA
* *
105934561 AATCGAGGGTGAAACA-G-TAAATCTATA
1 AATCGAGGGT-AAA-ATGATAATTCTGTA
*
105934588 AATCGAGGGTAAAATAATAATTCTGTA
1 AATCGAGGGTAAAATGATAATTCTGTA
* * *
105934615 AATCAAGAGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGATAATTCTGTA
105934642 AATC-AGGG
1 AATCGAGGG
105934650 GTATTTTGGT
Statistics
Matches: 143, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
25 1 0.01
26 7 0.05
27 130 0.91
28 4 0.03
29 1 0.01
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAATGATAATTCTGTA
Found at i:105934570 original size:81 final size:81
Alignment explanation
Indices: 105934458--105934649 Score: 253
Period size: 81 Copynumber: 2.4 Consensus size: 81
105934448 TTCACAATCG
* * * *
105934458 AGGGTAAAATGATAATTCTATAAATCGAGGGTAAAAC-GATAATTCTGTAACTCAAGGGTAAAAC
1 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAG-TAAATCTATAAATCAAGGGTAAAAC
*
105934522 AGTAATTCTGTAAATAA
65 AATAATTCTGTAAATAA
* * * *
105934539 AGGGTAAAACGGTAATTCTATAAATCGAGGGTGAAACAGTAAATCTATAAATCGAGGGTAAAATA
1 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAAATCTATAAATCAAGGGTAAAACA
*
105934604 ATAATTCTGTAAATCA
66 ATAATTCTGTAAATAA
* *
105934620 AGAGTAAAATGGTAATTCTGTAAATC-AGGG
1 AGGGTAAAATGGTAATTCTATAAATCGAGGG
105934650 GTATTTTGGT
Statistics
Matches: 97, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
80 4 0.04
81 92 0.95
82 1 0.01
ACGTcount: A:0.44, C:0.09, G:0.20, T:0.27
Consensus pattern (81 bp):
AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAAATCTATAAATCAAGGGTAAAACA
ATAATTCTGTAAATAA
Found at i:105934652 original size:54 final size:54
Alignment explanation
Indices: 105934453--105934649 Score: 218
Period size: 54 Copynumber: 3.7 Consensus size: 54
105934443 GTAATTTCAC
* *
105934453 AATCGAGGGTAAAA-TGATAATTCTATAAATCGAGGGTAAAACGATAATTCTGTA
1 AATCAAGGGTAAAACAG-TAATTCTATAAATCGAGGGTAAAACGATAATTCTGTA
* * ** * *
105934507 ACTCAAGGGTAAAACAGTAATTCTGTAAATAAAGGGTAAAACGGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTA
* * * **
105934561 AATCGAGGGTGAAACAGTAAATCTATAAATCGAGGGTAAAATAATAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTA
* ** *
105934615 AATCAAGAGTAAAATGGTAATTCTGTAAATC-AGGG
1 AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGG
105934650 GTATTTTGGT
Statistics
Matches: 116, Mismatches: 26, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 4 0.03
54 111 0.96
55 1 0.01
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.26
Consensus pattern (54 bp):
AATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTA
Found at i:105934659 original size:27 final size:27
Alignment explanation
Indices: 105934629--105934844 Score: 209
Period size: 27 Copynumber: 8.0 Consensus size: 27
105934619 AAGAGTAAAA
*
105934629 TGGTAATTCTGTAAATCAGGGGTATTT
1 TGGTAATTTTGTAAATCAGGGGTATTT
** * *
105934656 TGGTAATTTTACAAGTCAAGGGTATTT
1 TGGTAATTTTGTAAATCAGGGGTATTT
** ** *
105934683 CAGTAATTTTAAAAATTAGGGGTATTT
1 TGGTAATTTTGTAAATCAGGGGTATTT
**
105934710 TGGTAATTTTACAAA-CTAGGGGTATTT
1 TGGTAATTTTGTAAATC-AGGGGTATTT
* * *
105934737 TGATAATTTTGCAAATTAGGGGTATTT
1 TGGTAATTTTGTAAATCAGGGGTATTT
* * *
105934764 TGGTAATGTTGTAAATTAAGGGTATTT
1 TGGTAATTTTGTAAATCAGGGGTATTT
** *
105934791 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTGTAAATCAGGGGTATTT
* *
105934818 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTGTAAATCAGGGGTATTT
105934845 CAGTAACTTT
Statistics
Matches: 156, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.41
Consensus pattern (27 bp):
TGGTAATTTTGTAAATCAGGGGTATTT
Found at i:105934675 original size:54 final size:54
Alignment explanation
Indices: 105934617--105934723 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
105934607 ATTCTGTAAA
* **
105934617 TCAAGAGTAAAAT-GGTAATTCTGTAAATCAGGGGTATTTTGGTAATTTTACAAG
1 TCAAGAGT-AAATCAGTAATTCTAAAAATCAGGGGTATTTTGGTAATTTTACAAG
* ** * *
105934671 TCAAGGGTATTTCAGTAATTTTAAAAATTAGGGGTATTTTGGTAATTTTACAA
1 TCAAGAGTAAATCAGTAATTCTAAAAATCAGGGGTATTTTGGTAATTTTACAA
105934724 ACTAGGGGTA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 2 0.05
54 42 0.95
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.38
Consensus pattern (54 bp):
TCAAGAGTAAATCAGTAATTCTAAAAATCAGGGGTATTTTGGTAATTTTACAAG
Found at i:105934733 original size:54 final size:54
Alignment explanation
Indices: 105934641--105934866 Score: 240
Period size: 54 Copynumber: 4.2 Consensus size: 54
105934631 GTAATTCTGT
* *
105934641 AAATCAGGGGTATTTTGGTAATTTTAC-AAGTCAAGGGTATTTCAGTAATTTTAA
1 AAATCAGGGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTCAGTAATTTTAC
* * * *
105934695 AAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTT-TGATAATTTTGC
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAG-TAATTTTAC
* * ** * **
105934749 AAATTAGGGGTATTTTGGTAATGTTGTAAATTAAGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTAC
* ** * * *
105934803 AAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAACTTTAT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTAC
105934857 AAATCGAGGG
1 AAATC-AGGG
105934867 TAAAACTGTA
Statistics
Matches: 145, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 136 0.94
55 8 0.06
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.39
Consensus pattern (54 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTAC
Found at i:105934850 original size:27 final size:27
Alignment explanation
Indices: 105934641--105934827 Score: 223
Period size: 27 Copynumber: 6.9 Consensus size: 27
105934631 GTAATTCTGT
105934641 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * ** *
105934668 AAGTCAAGGGTATTTCAGTAATTTTAA
1 AAATCAGGGGTATTTTGGTAATTTTAC
*
105934695 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* *
105934722 AAA-CTAGGGGTATTTTGATAATTTTGC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
* * **
105934749 AAATTAGGGGTATTTTGGTAATGTTGT
1 AAATCAGGGGTATTTTGGTAATTTTAC
* *
105934776 AAATTAAGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
*
105934803 AAACCAGGGGTATTTTGGTAATTTT
1 AAATCAGGGGTATTTTGGTAATTTT
105934828 GTAAACCAAG
Statistics
Matches: 133, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.42
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:105934885 original size:81 final size:79
Alignment explanation
Indices: 105934645--105934860 Score: 270
Period size: 81 Copynumber: 2.7 Consensus size: 79
105934635 TTCTGTAAAT
* * * *
105934645 CAGGGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTCAGTAATTTTAAAAATTAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTGCAAATCAAGGGTATTTCAGTAA-TTTATAAA-TAAGGGTATTT
105934710 TGGTAATTTTACAAAC
64 TGGTAATTTTACAAAC
* * * * ** *
105934726 TAGGGGTATTTTGATAATTTTGCAAATTAGGGGTATTTTGGTAATGTTGTAAATTAAGGGTATTT
1 CAGGGGTATTTTGGTAATTTTGCAAATCAAGGGTATTTCAGTAAT-TTATAAA-TAAGGGTATTT
105934791 TGGTAATTTTACAAAC
64 TGGTAATTTTACAAAC
* *
105934807 CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAACTTTATAAAT
1 CAGGGGTATTTTGGTAATTTTGCAAATCAAGGGTATTTCAGTAA-TTTATAAAT
105934861 CGAGGGTAAA
Statistics
Matches: 113, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
80 2 0.02
81 110 0.97
82 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.22, T:0.41
Consensus pattern (79 bp):
CAGGGGTATTTTGGTAATTTTGCAAATCAAGGGTATTTCAGTAATTTATAAATAAGGGTATTTTG
GTAATTTTACAAAC
Found at i:105940230 original size:10 final size:10
Alignment explanation
Indices: 105940215--105940239 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
105940205 AAAACAGCAT
105940215 ATATATATAG
1 ATATATATAG
105940225 ATATATATAG
1 ATATATATAG
105940235 ATATA
1 ATATA
105940240 GATAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (10 bp):
ATATATATAG
Found at i:105941027 original size:3 final size:3
Alignment explanation
Indices: 105941019--105941051 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
105941009 TGTATTTCAA
105941019 TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
105941052 GTGTATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:105941030 original size:131 final size:131
Alignment explanation
Indices: 105940888--105941127 Score: 319
Period size: 131 Copynumber: 1.8 Consensus size: 131
105940878 TTATCACTTC
* *
105940888 TATTGTTATTATTATTAATATTAGTGTATGT-TTCA-T-TATA-TATGTATGTATATATATTTTT
1 TATTATTATTATTATTAATATTA-T-TATATATT-AGTGTATATTATGTATGTATATATA--TTT
*
105940949 ATATATAGTATT-ATTTTAATTACTTTATTTTAATATTATTATTATATTATATTTACTCTTTGTA
61 ATATATAGTATTGATTTTAATTACTTTAATTTAATATTATTATTATATTATATTTACTCTTTGTA
105941013 TTTCAA
126 TTTCAA
* * *
105941019 TATTATTATTATTATTATTATTATTATATATTAGTGTATATTTTTTATGTATATATATTTATATA
1 TATTATTATTATTATTAATATTATTATATATTAGTGTATATTATGTATGTATATATATTTATATA
* * *
105941084 TAGTATTGTTTTTTATTACTTTAATTTAATATTTTTATTATATT
66 TAGTATTGATTTTAATTACTTTAATTTAATATTATTATTATATT
105941128 TTCTTTTTGT
Statistics
Matches: 95, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
129 5 0.05
130 19 0.20
131 57 0.60
132 14 0.15
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (131 bp):
TATTATTATTATTATTAATATTATTATATATTAGTGTATATTATGTATGTATATATATTTATATA
TAGTATTGATTTTAATTACTTTAATTTAATATTATTATTATATTATATTTACTCTTTGTATTTCA
A
Found at i:105941157 original size:3 final size:3
Alignment explanation
Indices: 105941149--105941186 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
105941139 TTTCTATATT
105941149 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
105941187 GTGTGTATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:105941829 original size:25 final size:23
Alignment explanation
Indices: 105941774--105941828 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
105941764 ACATTTTTAC
105941774 TATTATTATAATGTTTAATACCA
1 TATTATTATAATGTTTAATACCA
* *
105941797 TATATATTATTATCGTTTTATA-C-
1 TAT-TATTATAAT-GTTTAATACCA
105941820 TATTATTAT
1 TATTATTAT
105941829 TTATATTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 6 0.21
23 6 0.21
24 9 0.32
25 7 0.25
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.55
Consensus pattern (23 bp):
TATTATTATAATGTTTAATACCA
Found at i:105941833 original size:15 final size:15
Alignment explanation
Indices: 105941813--105941843 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
105941803 TTATTATCGT
105941813 TTTATACTATTATTA
1 TTTATACTATTATTA
*
105941828 TTTATATTATTATTA
1 TTTATACTATTATTA
105941843 T
1 T
105941844 CGTTTTCGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTATACTATTATTA
Found at i:105943125 original size:71 final size:70
Alignment explanation
Indices: 105943042--105943181 Score: 208
Period size: 70 Copynumber: 2.0 Consensus size: 70
105943032 CTTTGTTGCG
*
105943042 TACTATTATCTGGTCTGGCAGTTTAACTGCAACCCCATCTATATGGCAGACTACCGCATTACACA
1 TACTATTATCTGGTCTGGCAGTTTAACTGCAA-CCCATCTATACGGCAGACTACCGCATTACACA
105943107 ATACAA
65 ATACAA
* ** * * *
105943113 TACTATTATCTGGTCTGGCAGTTTAACTGTAACCTGTCTATACGGCGGACTATCGTATTACACAA
1 TACTATTATCTGGTCTGGCAGTTTAACTGCAACCCATCTATACGGCAGACTACCGCATTACACAA
105943178 TACA
66 TACA
105943182 GCATATACGC
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
70 31 0.50
71 31 0.50
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (70 bp):
TACTATTATCTGGTCTGGCAGTTTAACTGCAACCCATCTATACGGCAGACTACCGCATTACACAA
TACAA
Found at i:105950626 original size:47 final size:47
Alignment explanation
Indices: 105950557--105950652 Score: 176
Period size: 47 Copynumber: 2.0 Consensus size: 47
105950547 ACCTAAGGGG
105950557 AATGAAACCTAAGACGGATCTTGTTATTATTATCTGAATTGTATGAT
1 AATGAAACCTAAGACGGATCTTGTTATTATTATCTGAATTGTATGAT
105950604 AATGAAACAC-AAGACGGATCTTGTTATTATTATCTGAATTGTATGAT
1 AATGAAAC-CTAAGACGGATCTTGTTATTATTATCTGAATTGTATGAT
105950651 AA
1 AA
105950653 ATATTTAACT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
47 47 0.98
48 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.36
Consensus pattern (47 bp):
AATGAAACCTAAGACGGATCTTGTTATTATTATCTGAATTGTATGAT
Found at i:105958400 original size:25 final size:25
Alignment explanation
Indices: 105958371--105958420 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
105958361 TATGCGATTA
105958371 ACTGGATCTTGTGAATGAATGTAGG
1 ACTGGATCTTGTGAATGAATGTAGG
105958396 ACTGGATCTTGTGAATGAATGTAGG
1 ACTGGATCTTGTGAATGAATGTAGG
105958421 TTTGAGTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.32, T:0.32
Consensus pattern (25 bp):
ACTGGATCTTGTGAATGAATGTAGG
Found at i:105958692 original size:27 final size:27
Alignment explanation
Indices: 105958652--105959008 Score: 354
Period size: 27 Copynumber: 13.3 Consensus size: 27
105958642 ATAGTGATCA
*
105958652 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
* **
105958679 TAATACCCCTATAGGGTAAAATGACCA
1 AAATACCCCTATAGGGTAAAATGACTG
105958706 AAATA-CCCTCATAGGGTAAAATGACTG
1 AAATACCCCT-ATAGGGTAAAATGACTG
**
105958733 AAATACCCCTATACAGTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
*
105958760 TAATACCCC-ATAGGGTAAAATGA-TCG
1 AAATACCCCTATAGGGTAAAATGACT-G
*
105958786 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
* *
105958813 TAATA-TCCTCATTA-GGTAAAATGACTG
1 AAATACCCCT-A-TAGGGTAAAATGACTG
*
105958840 AAATACCCC-ATAGGGTAAAATGAC-C
1 AAATACCCCTATAGGGTAAAATGACTG
* *
105958865 AAACTA-CCTTCATAGGGTAAAATGACCG
1 AAA-TACCCCT-ATAGGGTAAAATGACTG
* * **
105958893 AAATACTCTTATAGGGTAAAATGACCA
1 AAATACCCCTATAGGGTAAAATGACTG
* *
105958920 AAATACACCC-ATAGGGTGAAATGACCG
1 AAATAC-CCCTATAGGGTAAAATGACTG
* *
105958947 AAATACCCTTATAAGGTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
* * * *
105958974 CAATACCCCCATAGCGTAAAATAACTG
1 AAATACCCCTATAGGGTAAAATGACTG
*
105959001 TAATACCC
1 AAATACCC
105959009 TGTGAGATAA
Statistics
Matches: 276, Mismatches: 38, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
25 8 0.03
26 43 0.16
27 209 0.76
28 16 0.06
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.22
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAAAATGACTG
Found at i:105958732 original size:54 final size:54
Alignment explanation
Indices: 105958650--105959008 Score: 404
Period size: 54 Copynumber: 6.7 Consensus size: 54
105958640 AAATAGTGAT
* *
105958650 CAAAATACCCCCATAGGGTAAAATGACTGTAATACCCCTATAGGGTAAAATGAC
1 CAAAATACCCTCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGAC
**
105958704 CAAAATACCCTCATAGGGTAAAATGACTGAAATACCCCTATACAGTAAAATGAC
1 CAAAATACCCTCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGAC
*** *
105958758 TGTAATACCC-CATAGGGTAAAATGA-TCGAAATACCCCCATAGGGTAAAATGAC
1 CAAAATACCCTCATAGGGTAAAATGACT-GAAATACCCCTATAGGGTAAAATGAC
*** *
105958811 TGTAATATCCTCATTA-GGTAAAATGACTGAAATACCCC-ATAGGGTAAAATGAC
1 CAAAATACCCTCA-TAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGAC
* * * * *
105958864 CAAACTACCTTCATAGGGTAAAATGACCGAAATACTCTTATAGGGTAAAATGAC
1 CAAAATACCCTCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGAC
* * * *
105958918 CAAAATACACC-CATAGGGTGAAATGACCGAAATACCCTTATAAGGTAAAATGAC
1 CAAAATAC-CCTCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGAC
*** * * * *
105958972 TGCAATACCCCCATAGCGTAAAATAACTGTAATACCC
1 CAAAATACCCTCATAGGGTAAAATGACTGAAATACCC
105959009 TGTGAGATAA
Statistics
Matches: 264, Mismatches: 33, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
52 3 0.01
53 90 0.34
54 167 0.63
55 4 0.02
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.22
Consensus pattern (54 bp):
CAAAATACCCTCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGAC
Found at i:105959023 original size:107 final size:106
Alignment explanation
Indices: 105958653--105959008 Score: 409
Period size: 107 Copynumber: 3.3 Consensus size: 106
105958643 TAGTGATCAA
*
105958653 AATACCCCCATAGGGTAAAATGACTGTAATACCCCTATAGGGTAAAATGACCAAAATACCCTCAT
1 AATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGACCAAAATACCC-CAT
*
105958718 AGGGTAAAATGACTGAAATACCCCTATACA-GTAAAATGACTGT
65 AGGGTAAAATGACTGAAATA-CCCTATA-AGGTAAAATGACTGC
* *** *
105958761 AATA-CCCCATAGGGTAAAATGA-TCGAAATACCCCCATAGGGTAAAATGACTGTAATATCCTCA
1 AATACCCCCATAGGGTAAAATGACT-GAAATACCCCTATAGGGTAAAATGACCAAAATA-CCCCA
* *
105958824 TTA-GGTAAAATGACTGAAATACCCCATAGGGTAAAATGAC--C
64 -TAGGGTAAAATGACTGAAATACCCTATAAGGTAAAATGACTGC
** * * *
105958865 AAACTACCTTCATAGGGTAAAATGACCGAAATACTCTTATAGGGTAAAATGACCAAAATACACCC
1 -AA-TACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGACCAAAATAC-CCC
* *
105958930 ATAGGGTGAAATGACCGAAATACCCTTATAAGGTAAAATGACTGC
63 ATAGGGTAAAATGACTGAAATACCC-TATAAGGTAAAATGACTGC
* * *
105958975 AATACCCCCATAGCGTAAAATAACTGTAATACCC
1 AATACCCCCATAGGGTAAAATGACTGAAATACCC
105959009 TGTGAGATAA
Statistics
Matches: 205, Mismatches: 30, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
105 2 0.01
106 22 0.11
107 131 0.64
108 47 0.23
109 2 0.01
110 1 0.00
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.22
Consensus pattern (106 bp):
AATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGACCAAAATACCCCATA
GGGTAAAATGACTGAAATACCCTATAAGGTAAAATGACTGC
Found at i:105962364 original size:27 final size:27
Alignment explanation
Indices: 105962324--105962568 Score: 256
Period size: 27 Copynumber: 9.1 Consensus size: 27
105962314 AATAGTGATC
*
105962324 GAAATATCCCCATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
* *
105962351 GTAATACCCCCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACT
* * *
105962378 AAAATACCCTCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACT
* *
105962405 GAAGTACACCCATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
* * *
105962432 GAAATACCCTCATAGGGTGAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACT
* * * *
105962459 AAAATACACCCATAGGGTGAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACT
* ** *
105962486 AAAATACCCTTATAGGGTAAAATGATT
1 GAAATACCCCCATAGGGTAAAATGACT
* *
105962513 GTAATACCCTCATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
* ** * *
105962540 GTAATACCCCTGTAAGATAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
105962567 GA
1 GA
105962569 TTTGCCCTAC
Statistics
Matches: 183, Mismatches: 35, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 183 1.00
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (27 bp):
GAAATACCCCCATAGGGTAAAATGACT
Found at i:105962473 original size:81 final size:80
Alignment explanation
Indices: 105962325--105962538 Score: 313
Period size: 81 Copynumber: 2.6 Consensus size: 80
105962315 ATAGTGATCG
*
105962325 AAATATCCCCATAGGGTAAAATGACTGTAATACCCCCATAGGGTAAAATGACCAAAATACCCTCA
1 AAATA-CCCCATAGGGTAAAATGACTGTAATACCCTCATAGGGTAAAATGACCAAAATACCCTCA
*
105962390 TAGGGTAAAATGACCG
65 TAGGGTAAAATGACCA
* * *
105962406 AAGTACACCCATAGGGTAAAATGACTGAAATACCCTCATAGGGTGAAATGACCAAAATACACC-C
1 AAATAC-CCCATAGGGTAAAATGACTGTAATACCCTCATAGGGTAAAATGACCAAAATAC-CCTC
*
105962470 ATAGGGTGAAATGACCA
64 ATAGGGTAAAATGACCA
* *
105962487 AAATACCCTTATAGGGTAAAATGATTGTAATACCCTCATAGGGTAAAATGAC
1 AAATACCC-CATAGGGTAAAATGACTGTAATACCCTCATAGGGTAAAATGAC
105962539 TGTAATACCC
Statistics
Matches: 119, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
80 3 0.03
81 114 0.96
82 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (80 bp):
AAATACCCCATAGGGTAAAATGACTGTAATACCCTCATAGGGTAAAATGACCAAAATACCCTCAT
AGGGTAAAATGACCA
Found at i:105962563 original size:81 final size:81
Alignment explanation
Indices: 105962332--105962565 Score: 294
Period size: 81 Copynumber: 2.9 Consensus size: 81
105962322 TCGAAATATC
*
105962332 CCCATAGGGTAAAATGACTGTAATACCCCCATAGGGTAAAATGACCAAAATA-CCCTCATAGGGT
1 CCCATAGGGTAAAATGACTGTAATACCCTCATAGGGTAAAATGACCAAAATACCCCT-ATAGGGT
* *
105962396 AAAATGACCGAAGTACA
65 AAAATGACCAAAATACA
* *
105962413 CCCATAGGGTAAAATGACTGAAATACCCTCATAGGGTGAAATGACCAAAATACACCC-ATAGGGT
1 CCCATAGGGTAAAATGACTGTAATACCCTCATAGGGTAAAATGACCAAAATAC-CCCTATAGGGT
*
105962477 GAAATGACCAAAATAC-
65 AAAATGACCAAAATACA
* * *** * * *
105962493 CCTTATAGGGTAAAATGATTGTAATACCCTCATAGGGTAAAATGACTGTAATACCCCTGTAAGAT
1 CC-CATAGGGTAAAATGACTGTAATACCCTCATAGGGTAAAATGACCAAAATACCCCTATAGGGT
105962558 AAAATGAC
65 AAAATGAC
105962566 TGATTTGCCC
Statistics
Matches: 132, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
80 5 0.04
81 124 0.94
83 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (81 bp):
CCCATAGGGTAAAATGACTGTAATACCCTCATAGGGTAAAATGACCAAAATACCCCTATAGGGTA
AAATGACCAAAATACA
Found at i:105965970 original size:33 final size:27
Alignment explanation
Indices: 105965820--105966045 Score: 220
Period size: 27 Copynumber: 8.1 Consensus size: 27
105965810 GCTGAAATAG
*
105965820 TGACCGAAATATCCC-CATAGGGTAAAA
1 TGACCGAAATA-CCCTCGTAGGGTAAAA
*** * *
105965847 TGACTTTAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCTCGTAGGGTAAAA
* *
105965874 TGACCGAAATACCCTCATAAGGTAAAA
1 TGACCGAAATACCCTCGTAGGGTAAAA
* * *
105965901 TAAACGAAATACCTTCGTAGGGTAAAA
1 TGACCGAAATACCCTCGTAGGGTAAAA
105965928 TGACCGAAATACCCTCGTAGGGTAAAA
1 TGACCGAAATACCCTCGTAGGGTAAAA
*
105965955 TGATTTTACCGGAAATACCCCCGTAGGGTAAAA
1 TG-----ACC-GAAATACCCTCGTAGGGTAAAA
** * *
105965988 TGTTCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCTCGTAGGGTAAAA
* *
105966015 TGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCTCGTAGGGTAAAA
105966042 TGAC
1 TGAC
105966046 TATTATACCC
Statistics
Matches: 170, Mismatches: 22, Indels: 14
0.83 0.11 0.07
Matches are distributed among these distances:
26 3 0.02
27 140 0.82
28 1 0.01
32 3 0.02
33 23 0.14
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.21
Consensus pattern (27 bp):
TGACCGAAATACCCTCGTAGGGTAAAA
Found at i:105966059 original size:54 final size:54
Alignment explanation
Indices: 105965820--105966045 Score: 254
Period size: 54 Copynumber: 4.1 Consensus size: 54
105965810 GCTGAAATAG
* ***
105965820 TGACCGAAATATCCCCATAGGGTAAAATGACTTTAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
* * * * ** *
105965874 TGACCGAAATACCCTCATAAGGTAAAATAAACGAAATACCTTCGTAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
* * *
105965928 TGACCGAAATACCCTCGTAGGGTAAAATGATTTTACCGGAAATACCCCCGTAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAATG-----ACC-GAAATACCCCCATAGGGTAAAA
**
105965988 TGTTCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
105966042 TGAC
1 TGAC
105966046 TATTATACCC
Statistics
Matches: 142, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
54 92 0.65
55 3 0.02
59 2 0.01
60 45 0.32
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.21
Consensus pattern (54 bp):
TGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
Found at i:105971298 original size:51 final size:51
Alignment explanation
Indices: 105971222--105971361 Score: 183
Period size: 50 Copynumber: 2.8 Consensus size: 51
105971212 TGAGGTCGCA
* * *
105971222 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
* * ** *
105971273 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
* *
105971323 TGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
105971362 GCTTTGGCTA
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
50 42 0.55
51 34 0.45
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAACTTAGATCACG
Found at i:105976679 original size:26 final size:26
Alignment explanation
Indices: 105976650--105976731 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
105976640 TGGTACAAAT
*
105976650 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
105976676 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
105976702 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
105976728 TGAT
1 TGAT
105976732 GGGCATTTTA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:105979016 original size:21 final size:21
Alignment explanation
Indices: 105978990--105979044 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
105978980 TAGGACGCGT
105978990 TTTCAAAAAAACAACAATTGA
1 TTTCAAAAAAACAACAATTGA
105979011 TTTCAAAAAAACAACAATTGA
1 TTTCAAAAAAACAACAATTGA
*
105979032 TTTCAAAATAACA
1 TTTCAAAAAAACA
105979045 CGACAACAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.56, C:0.15, G:0.04, T:0.25
Consensus pattern (21 bp):
TTTCAAAAAAACAACAATTGA
Found at i:105980349 original size:21 final size:23
Alignment explanation
Indices: 105980307--105980351 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
105980297 CCCACCTCTG
105980307 CCGTGGATTAATACTATGGATTT
1 CCGTGGATTAATACTATGGATTT
105980330 CCGTGGATTAATA-T-TGGATTT
1 CCGTGGATTAATACTATGGATTT
105980351 C
1 C
105980352 TGTCTATGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 8 0.36
22 1 0.05
23 13 0.59
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.40
Consensus pattern (23 bp):
CCGTGGATTAATACTATGGATTT
Found at i:105996934 original size:22 final size:22
Alignment explanation
Indices: 105996908--105996960 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
105996898 CCTATTTTTT
105996908 AAGCTAAAAGTAAAATATTAAG
1 AAGCTAAAAGTAAAATATTAAG
105996930 AAGCTAAAAGTAAAATATTAAG
1 AAGCTAAAAGTAAAATATTAAG
*
105996952 AAACTAAAA
1 AAGCTAAAA
105996961 AGATTGTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.62, C:0.06, G:0.11, T:0.21
Consensus pattern (22 bp):
AAGCTAAAAGTAAAATATTAAG
Found at i:106001785 original size:24 final size:25
Alignment explanation
Indices: 106001733--106001785 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
106001723 CATACATAAA
106001733 AAATATATATACAATATAGTATTAG
1 AAATATATATACAATATAGTATTAG
* *
106001758 -AATATTTATATAATATA-TATTAG
1 AAATATATATACAATATAGTATTAG
106001781 AAATA
1 AAATA
106001786 ATAATAATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.40
Consensus pattern (25 bp):
AAATATATATACAATATAGTATTAG
Found at i:106001879 original size:3 final size:3
Alignment explanation
Indices: 106001873--106001907 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
106001863 AAACATATAC
*
106001873 TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
106001908 TCAAAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Done.