Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 329 of 352
Found at i:106273902 original size:30 final size:32
Alignment explanation
Indices: 106273866--106273961 Score: 110
Period size: 30 Copynumber: 3.1 Consensus size: 32
106273856 TTATTATATG
**
106273866 TTATATTTTATTATATGTTAT-TTAT-TCCAT
1 TTATATTTTATTATATGTTATATTATATAAAT
*
106273896 TTATATTTTATTATATTTTATATTATATAAAT
1 TTATATTTTATTATATGTTATATTATATAAAT
* *
106273928 TAATTATTTTATTATATGTT-TA-TATGTAAAT
1 TTA-TATTTTATTATATGTTATATTATATAAAT
106273959 TTA
1 TTA
106273962 CTTAATATAT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
30 20 0.36
31 14 0.25
32 7 0.12
33 15 0.27
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.61
Consensus pattern (32 bp):
TTATATTTTATTATATGTTATATTATATAAAT
Found at i:106273911 original size:10 final size:10
Alignment explanation
Indices: 106273824--106273916 Score: 61
Period size: 10 Copynumber: 9.5 Consensus size: 10
106273814 CTTTATATTC
106273824 TTTATTATAT
1 TTTATTATAT
* *
106273834 TATA-TACAT
1 TTTATTATAT
*
106273843 TTTTTTATAAAT
1 TTTATTAT--AT
106273855 TTTATTATA-
1 TTTATTATAT
*
106273864 --TGTTATAT
1 TTTATTATAT
106273872 TTTATTATAT
1 TTTATTATAT
*
106273882 GTTATT-TAT
1 TTTATTATAT
**
106273891 TCCATTTATAT
1 TTTA-TTATAT
106273902 TTTATTATAT
1 TTTATTATAT
106273912 TTTAT
1 TTTAT
106273917 ATTATATAAA
Statistics
Matches: 61, Mismatches: 14, Indels: 16
0.67 0.15 0.18
Matches are distributed among these distances:
7 6 0.10
9 10 0.16
10 31 0.51
11 5 0.08
12 9 0.15
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (10 bp):
TTTATTATAT
Found at i:106273929 original size:21 final size:21
Alignment explanation
Indices: 106273905--106273944 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
106273895 TTTATATTTT
106273905 ATTATATT-TTATATTATATAA
1 ATTA-ATTATTATATTATATAA
*
106273926 ATTAATTATTTTATTATAT
1 ATTAATTATTATATTATAT
106273945 GTTTATATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTAATTATTATATTATATAA
Found at i:106273995 original size:21 final size:23
Alignment explanation
Indices: 106273966--106274013 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
106273956 AATTTACTTA
*
106273966 ATATATCATTT-TTAT-TATTTT
1 ATATATCATTTATTATATAGTTT
*
106273987 ATATTTCATTTATTATATAGTTT
1 ATATATCATTTATTATATAGTTT
106274010 ATAT
1 ATAT
106274014 CATTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 10 0.43
22 4 0.17
23 9 0.39
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (23 bp):
ATATATCATTTATTATATAGTTT
Found at i:106276063 original size:25 final size:25
Alignment explanation
Indices: 106276029--106276080 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
106276019 TCAGCTGCCC
106276029 TCTACCATTGACTCCATTGTCTCAG
1 TCTACCATTGACTCCATTGTCTCAG
* *
106276054 TCTACCATTGATTCCATTGTCTTAG
1 TCTACCATTGACTCCATTGTCTCAG
106276079 TC
1 TC
106276081 AATTAGTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.19, C:0.29, G:0.12, T:0.40
Consensus pattern (25 bp):
TCTACCATTGACTCCATTGTCTCAG
Found at i:106278642 original size:51 final size:51
Alignment explanation
Indices: 106278464--106278643 Score: 193
Period size: 51 Copynumber: 3.5 Consensus size: 51
106278454 ACGGATACAG
* *
106278464 GAACCCCTATGTAACACGGATAAAGTAGC-TGGAGGAGAAGTGGACATAGGTA
1 GAACCCCTATGTAACCCGGATAAAGTA-CTTTGAGGAGAAGTGGACATAGG-A
** * * * * *
106278516 -AATTCCTATGTAACCCAGAGAAAGTACCTTGCGGAGAAGTGGACATAGGT
1 GAACCCCTATGTAACCCGGATAAAGTACTTTGAGGAGAAGTGGACATAGGA
* * *
106278566 GAACCCCTATGTAACCCGAAAAAAGTACTTTGCGGAGAAGTGGACATAGGA
1 GAACCCCTATGTAACCCGGATAAAGTACTTTGAGGAGAAGTGGACATAGGA
* * *
106278617 GCACCCCTAAGTAACCTGGATAAAGTA
1 GAACCCCTATGTAACCCGGATAAAGTA
106278644 GCTTGAGAAG
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
50 1 0.01
51 105 0.99
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (51 bp):
GAACCCCTATGTAACCCGGATAAAGTACTTTGAGGAGAAGTGGACATAGGA
Found at i:106278664 original size:102 final size:101
Alignment explanation
Indices: 106278410--106278684 Score: 254
Period size: 102 Copynumber: 2.7 Consensus size: 101
106278400 GGAGCTGACT
* * * * * *
106278410 TAGGAGCACCCCTAAGTAACTTGAATAAAGTATCTTGAGGAGAAACGGATACAG-GAACCCCTAT
1 TAGGAGCACCCCTAAGTAACCTGGATAAAGTACCTTGAGGAGAAACTGACATAGTGAACCCCTAT
* * *
106278474 GTAACACGGATAAAGTAGCTGGAGGAGAAGTGGACA
66 GTAACCCGAAAAAAGTAGCTGGAGGAGAAGTGGACA
* ** * ** * * *
106278510 TAGGTA-AATTCCTATGTAACCCAGAGAAAGTACCTTGCGGAG-AAGTGGACATAGGTGAACCCC
1 TAGG-AGCACCCCTAAGTAACCTGGATAAAGTACCTTGAGGAGAAACT-GACATA-GTGAACCCC
* *
106278573 TATGTAACCCGAAAAAAGTA-CTTTGCGGAGAAGTGGACA
63 TATGTAACCCGAAAAAAGTAGC-TGGAGGAGAAGTGGACA
* * *
106278612 TAGGAGCACCCCTAAGTAACCTGGATAAAGTAGCTTGAGAAGAAACTAACATAGTAGAACCCCTA
1 TAGGAGCACCCCTAAGTAACCTGGATAAAGTACCTTGAGGAGAAACTGACATAGT-GAACCCCT-
106278677 AT-TAACCC
64 ATGTAACCC
106278685 ATGTTGAGAC
Statistics
Matches: 134, Mismatches: 32, Indels: 16
0.74 0.18 0.09
Matches are distributed among these distances:
99 2 0.01
100 33 0.25
101 6 0.04
102 88 0.66
103 5 0.04
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.19
Consensus pattern (101 bp):
TAGGAGCACCCCTAAGTAACCTGGATAAAGTACCTTGAGGAGAAACTGACATAGTGAACCCCTAT
GTAACCCGAAAAAAGTAGCTGGAGGAGAAGTGGACA
Found at i:106280155 original size:17 final size:17
Alignment explanation
Indices: 106280135--106280203 Score: 120
Period size: 17 Copynumber: 4.0 Consensus size: 17
106280125 CAAGATAGTA
106280135 TATCATATCTAAGATTG
1 TATCATATCTAAGATTG
106280152 TATCATATCTAAGATTG
1 TATCATATCTAAGATTG
*
106280169 CAATCATATCTAAGATTG
1 -TATCATATCTAAGATTG
106280187 TATCATATCTAAGATTG
1 TATCATATCTAAGATTG
106280204 CATATCATTG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
17 33 0.67
18 16 0.33
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (17 bp):
TATCATATCTAAGATTG
Found at i:106280179 original size:35 final size:36
Alignment explanation
Indices: 106280134--106280211 Score: 149
Period size: 35 Copynumber: 2.2 Consensus size: 36
106280124 CCAAGATAGT
106280134 ATATCATATCTAAGATTGTATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGTATCATATCTAAGATTGC
106280170 A-ATCATATCTAAGATTGTATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGTATCATATCTAAGATTGC
106280205 ATATCAT
1 ATATCAT
106280212 TGAAGATTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 35 0.85
36 6 0.15
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (36 bp):
ATATCATATCTAAGATTGTATCATATCTAAGATTGC
Found at i:106281145 original size:288 final size:286
Alignment explanation
Indices: 106280624--106281427 Score: 1141
Period size: 288 Copynumber: 2.8 Consensus size: 286
106280614 TTCCCTGACA
* * *
106280624 ATAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGCGAAAGCCAAATCAGCTATGT
1 ATAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAG-CAAATCAGCTATGT
* * *
106280689 CTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTATTTGAGAACATCTGA
65 CTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGG-TCTGTTTGAGAACATCTGA
* * * *
106280754 GAGTCAAATCTGCTATGTCCTCAATTTATTCCTTGTAAATACAAGAATGCCAAATCATCTTGGAT
129 GAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* * * *
106280819 CTGCTTCAGTATAAACATCTGAAGCTTAGATCTGCTATGTGTCTAC-TCTCCGTCGATA-TAGAG
194 CTACTTCAGTATAAACATCTGAAGCTTAGATATGCTATGTATCTACTTC-CCATCGA-AGTAGAG
*
106280882 ATGCCAAACTTCGATTCATTCTCTGACAAT
257 ATACCAAACTTCGATTCATTCTCTGACAAT
* *
106280912 ATAGAGACGACAAATTATCTTAGATTTGCTTCATCGTAAACACGTGAAAGTCAAATCAGCTATGT
1 ATAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAG-CAAATCAGCTATGT
*
106280977 CTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGGTCTGTTTGAGAACATCTGA
65 CTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT-GGTCTGTTTGAGAACATCTGA
* * *
106281042 GAGTTAAATCTGCTATGTCCTCGATTTGTTTCTTGTATACACAAGAATGCCAAACCATCTTGGAT
129 GAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* *
106281107 CTACTTCAGTATAAACATCTGAAGGTTAGATATGCTATGTATCTACTTCCCATCGAAGTGGAGAT
194 CTACTTCAGTATAAACATCTGAAGCTTAGATATGCTATGTATCTACTTCCCATCGAAGTAGAGAT
* * * **
106281172 ACCAGATTTTGATTTGTTCTCTGACAAT
259 ACCAAACTTCGATTCATTCTCTGACAAT
* * * *
106281200 ACAGAGATGACAAATCATCTTAGACTTGCTTTATCGTAAACACATGAAAGCAAATCAGCTATGTC
1 ATAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCAAATCAGCTATGTC
* * *
106281265 TTTGATTTGTTCTTTATAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACAT-TGAG
66 TTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG-GTCTGTTTGAGAACATCTGAG
*
106281329 AATCAAATCTGCTATGTCCTCGATTTG-TTCTTGTAAACACAAGAATGCCAAATCATCTTGGATC
130 AGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGGAT-
* * * *
106281393 CTACTTCAGTCTAATCGTCTGAAGC-TAGATCTGCT
194 CTACTTCAGTATAAACATCTGAAGCTTAGATATGCT
106281428 CTGTCTGAGA
Statistics
Matches: 463, Mismatches: 48, Indels: 13
0.88 0.09 0.02
Matches are distributed among these distances:
285 43 0.09
286 51 0.11
287 70 0.15
288 295 0.64
289 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (286 bp):
ATAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCAAATCAGCTATGTC
TTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGTCTGTTTGAGAACATCTGAGA
GTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGGATCT
ACTTCAGTATAAACATCTGAAGCTTAGATATGCTATGTATCTACTTCCCATCGAAGTAGAGATAC
CAAACTTCGATTCATTCTCTGACAAT
Found at i:106281838 original size:119 final size:119
Alignment explanation
Indices: 106281316--106282092 Score: 1262
Period size: 119 Copynumber: 6.6 Consensus size: 119
106281306 TGAGTCTGTT
* *
106281316 TGAGAACAT-TGAGAATCAAATCTGCTATGTCCTCGATTTGTT-CTTGTAAACACAAGAATGCCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* * * *
106281379 AATCATCTTGGATCCTACTTCAGTCTAATCGTCTGAA-GCTAGATCTGCTCTGTC
66 AATCATCTTGGAT-CTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
*
106281433 TGAGAACATCTTAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
*
106281498 AGTCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGT-
66 AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
*
106281551 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACATAA-AATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* **
106281615 AATCATCTTGGATCTACTTCAGTATAGACATCTGAAGGCTAGATC--AAATGTC
66 AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
106281667 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
*
106281732 AATCATCTTGGATCTACTTCAGTATAGACATCTGAAGGCTAGATCTGCTATGTC
66 AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
* *
106281786 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTATAAACACAAAAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* * **
106281851 AATCATCTTGGATCTACTTCAGTATAAACATTTGAAGGCTAGATCTGTTAAATC
66 AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
*
106281905 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* **
106281970 AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATTTGCTAAATC
66 AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
* * *
106282024 TGAGAACATCTAAGAGTCAAATCTACTATGTCCTCGATTTGTTCCCTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
106282089 AATC
66 AATC
106282093 TTGTTTCTTT
Statistics
Matches: 619, Mismatches: 34, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
115 4 0.01
116 56 0.09
117 111 0.18
118 106 0.17
119 342 0.55
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (119 bp):
TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
Found at i:106283021 original size:11 final size:10
Alignment explanation
Indices: 106282997--106283041 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
106282987 GGCCTCTCCA
*
106282997 TTTTT-TTTA
1 TTTTTCTTTT
106283006 TTTTTCTTTT
1 TTTTTCTTTT
106283016 TCTTTTCTTTT
1 T-TTTTCTTTT
*
106283027 TTTCTCTTTT
1 TTTTTCTTTT
106283037 TTTTT
1 TTTTT
106283042 GAAATAGAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 5 0.16
10 16 0.52
11 10 0.32
ACGTcount: A:0.02, C:0.11, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:106283021 original size:21 final size:20
Alignment explanation
Indices: 106282997--106283041 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
106282987 GGCCTCTCCA
*
106282997 TTTTTTT-TATTTTTCT-TT
1 TTTTTTTCTTTTTTTCTCTT
*
106283015 TTCTTTTCTTTTTTTCTCTT
1 TTTTTTTCTTTTTTTCTCTT
106283035 TTTTTTT
1 TTTTTTT
106283042 GAAATAGAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 6 0.27
19 8 0.36
20 8 0.36
ACGTcount: A:0.02, C:0.11, G:0.00, T:0.87
Consensus pattern (20 bp):
TTTTTTTCTTTTTTTCTCTT
Found at i:106283028 original size:13 final size:12
Alignment explanation
Indices: 106282997--106283041 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
106282987 GGCCTCTCCA
*
106282997 TTTTTTTTATTT
1 TTTTTTTTCTTT
*
106283009 TTCTTTTTCTTT
1 TTTTTTTTCTTT
*
106283021 TCTTTTTTTCTCT
1 T-TTTTTTTCTTT
106283034 TTTTTTTT
1 TTTTTTTT
106283042 GAAATAGAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 18 0.64
13 10 0.36
ACGTcount: A:0.02, C:0.11, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTTTTTCTTT
Found at i:106288078 original size:27 final size:27
Alignment explanation
Indices: 106288048--106288101 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
106288038 TCGAAACTAA
106288048 GCTCGTCTTTCAAAAATTTCTATCTCG
1 GCTCGTCTTTCAAAAATTTCTATCTCG
*
106288075 GCTCGTCTTTCGAAAATTTCTATCTCG
1 GCTCGTCTTTCAAAAATTTCTATCTCG
106288102 AAACAACAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.41
Consensus pattern (27 bp):
GCTCGTCTTTCAAAAATTTCTATCTCG
Found at i:106291480 original size:11 final size:10
Alignment explanation
Indices: 106291463--106291503 Score: 55
Period size: 11 Copynumber: 3.9 Consensus size: 10
106291453 CTTCTATTTC
106291463 AAAAAAAAAG
1 AAAAAAAAAG
*
106291473 AGAAAAAAAG
1 AAAAAAAAAG
106291483 AAAAGAAAAAG
1 AAAA-AAAAAG
106291494 AAAAATAAAA
1 AAAAA-AAAA
106291504 AAATGGAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
10 13 0.48
11 14 0.52
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:106291481 original size:13 final size:12
Alignment explanation
Indices: 106291463--106291506 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
106291453 CTTCTATTTC
*
106291463 AAAAAAAAAGAG
1 AAAAAAAAAAAG
106291475 AAAAAAAGAAAAG
1 AAAAAAA-AAAAG
* *
106291488 AAAAAGAAAAAT
1 AAAAAAAAAAAG
106291500 AAAAAAA
1 AAAAAAA
106291507 TGGAGAGGCC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:106292560 original size:119 final size:119
Alignment explanation
Indices: 106292411--106293193 Score: 1280
Period size: 119 Copynumber: 6.6 Consensus size: 119
106292401 AAAGAAACAA
* * *
106292411 GATTTGGTATTCTTGTGTTTACAGGGAACAAATCGAGGACATAGTAGATTTGACTCTTAGATGTT
1 GATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
** *
106292476 CTCAGATTTAGCAAATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGAT
66 CTCAGACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGAT
*
106292530 GATTTGGTATTCTTGTGTTTACAAGGAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTT
1 GATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
** * *
106292595 CTCAGATTTAACAGATCTAGCCTTCAAATGTTTATACTGAAGTAGATCCAAGAT
66 CTCAGACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGAT
* *
106292649 GATTTGGTATTTTTGTGTTTATAAGGAACAAATC-AGGACATAGCAGATTTGACTCTCAGATGTT
1 GATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
*
106292713 CTCAGACATAGCAGATCTAGCCTTCAGATGTCTATACTGAAGTAGATCCAAGAT
66 CTCAGACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGAT
106292767 GATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
1 GATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
** *
106292832 CTCAGACATAGTTGATCTAGCCTTCAGATGTCTATACTGAAGTAGATCCAAGAT
66 CTCAGACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGAT
*
106292886 GATTTGGTATTCTTATGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
1 GATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
*
106292951 CTCAAACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGAT
66 CTCAGACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGAT
* *
106293005 GACTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTAAGATGTT
1 GATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
* * * * *
106293070 CTCAGACAGAGCAGATCTAGCTTTCAGACGATTAGACTGAAGTAGGATCCAAGAT
66 CTCAGACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTA-GATCCAAGAT
* * * *
106293125 GATTTGGCATTCTTATGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGATTCTCAAATGTT
1 GATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
106293190 CTCA
66 CTCA
106293194 AACAGACTCA
Statistics
Matches: 624, Mismatches: 38, Indels: 3
0.94 0.06 0.00
Matches are distributed among these distances:
118 111 0.18
119 440 0.71
120 73 0.12
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (119 bp):
GATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
CTCAGACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGAT
Found at i:106292827 original size:237 final size:238
Alignment explanation
Indices: 106292411--106293193 Score: 1280
Period size: 237 Copynumber: 3.3 Consensus size: 238
106292401 AAAGAAACAA
* * * *
106292411 GATTTGGTATTCTTGTGTTTACAGGGAACAAATCGAGGACATAGTAGATTTGACTCTTAGATGTT
1 GATTTGGTATTCTTATGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
** *
106292476 CTCAGATTTAGCAAATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATT
66 CTCAGACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATT
* ** *
106292541 CTTGTGTTTACAAGGAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGATTTAA
131 CTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGACATAG
*
106292606 CAGATCTAGCCTTCAAATGTTTATACTGAAGTAGATCCAAGAT
196 CAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGAT
* * *
106292649 GATTTGGTATTTTTGTGTTTATAAGGAACAAATC-AGGACATAGCAGATTTGACTCTCAGATGTT
1 GATTTGGTATTCTTATGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
*
106292713 CTCAGACATAGCAGATCTAGCCTTCAGATGTCTATACTGAAGTAGATCCAAGATGATTTGGTATT
66 CTCAGACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATT
106292778 CTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGACATAG
131 CTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGACATAG
** *
106292843 TTGATCTAGCCTTCAGATGTCTATACTGAAGTAGATCCAAGAT
196 CAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGAT
106292886 GATTTGGTATTCTTATGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
1 GATTTGGTATTCTTATGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
* *
106292951 CTCAAACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGATGACTTGGTATT
66 CTCAGACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATT
* *
106293016 CTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTAAGATGTTCTCAGACAGAG
131 CTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGACATAG
* * * *
106293081 CAGATCTAGCTTTCAGACGATTAGACTGAAGTAGGATCCAAGAT
196 CAGATCTAGCCTTCAGATGTTTATACTGAAGTA-GATCCAAGAT
* * *
106293125 GATTTGGCATTCTTATGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGATTCTCAAATGTT
1 GATTTGGTATTCTTATGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
106293190 CTCA
66 CTCA
106293194 AACAGACTCA
Statistics
Matches: 508, Mismatches: 35, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
237 220 0.43
238 212 0.42
239 76 0.15
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (238 bp):
GATTTGGTATTCTTATGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTT
CTCAGACATAGCAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATT
CTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAGACATAG
CAGATCTAGCCTTCAGATGTTTATACTGAAGTAGATCCAAGAT
Found at i:106293712 original size:288 final size:287
Alignment explanation
Indices: 106293079--106293885 Score: 1138
Period size: 288 Copynumber: 2.8 Consensus size: 287
106293069 TCTCAGACAG
* * * *
106293079 AGCAGATCT-AGCTTTCAGACGATTAGACTGAAGTAGGATCCAAGATGATTTGGCATTCTTATGT
1 AGCAGATCTAAGC-TTCAGATGTTTATACTGAAGTA-GATCCAAGATGATTTGGCATTCTTGTGT
* * *
106293143 TTACAAGGAACAAATCGAGGACATAGCAGATTTGATTCTCAAATGTTCTCAAACAGA-CTCAAGA
64 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATAGACCT-AAGA
* * * *
106293207 TGGTTTGGCATCCTTGTGCTTATAAAGAACAAATCAAAGACATAGCTGATTTGCTTTCATGTGTT
128 TGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGCTTTCACGTGTT
* * *
106293272 TACGATAAAGCAAGTCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCAAAATCTGG
193 TACGATGAAGCAAATCTAAGATGATTTGTCATCTCTATATTGTCAGAGAACAAATCAAAATCTGG
* * *
106293337 TATCTCCACTTCGATGGGAAGTAGATACAT
258 CATCTCCACTTCGACGGGAAGTAGACACAT
* * * *
106293367 AGCATATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATTCTTGTGTAT
1 AGCAGATCTAAGCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGTTT
* * *
106293432 ACAAGAAACAAATCGAGGACATAGCAGATTTAACTCTCAGATGTTCTCAAATAGACCTAAGATGA
66 ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATAGACCTAAGATGG
106293497 TTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGACTTTCACGTGTTTA
131 TTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTG-CTTTCACGTGTTTA
* * ** * * *
106293562 CGATGAAGCAAATCTAAGATAATTTGTCGTCTCTATATTGTCAGAGAATGAATCGAAGTTTGGCA
195 CGATGAAGCAAATCTAAGATGATTTGTCATCTCTATATTGTCAGAGAACAAATCAAAATCTGGCA
*
106293627 TCTCTA-TATCGAC-GGAGAGTAGACACAT
260 TCTCCACT-TCGACGGGA-AGTAGACACAT
* *
106293655 AGCAGATCTAAGCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTATTT
1 AGCAGATCTAAGCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGTTT
* *
106293720 ACAAGGAATAAATTGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATAGATCC-AAGATG
66 ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATAGA-CCTAAGATG
* * *
106293784 GTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCGCGTGTTT
130 GTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTT-GCTTTCACGTGTTT
* *
106293849 ACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTAT
194 ACGATGAAGCAAATCTAAGATGATTTGTCATCTCTAT
106293886 TGTCAGGGAA
Statistics
Matches: 462, Mismatches: 50, Indels: 14
0.88 0.10 0.03
Matches are distributed among these distances:
287 134 0.29
288 323 0.70
289 5 0.01
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (287 bp):
AGCAGATCTAAGCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGCATTCTTGTGTTT
ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATAGACCTAAGATGG
TTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGCTTTCACGTGTTTAC
GATGAAGCAAATCTAAGATGATTTGTCATCTCTATATTGTCAGAGAACAAATCAAAATCTGGCAT
CTCCACTTCGACGGGAAGTAGACACAT
Found at i:106294328 original size:17 final size:17
Alignment explanation
Indices: 106294308--106294376 Score: 120
Period size: 17 Copynumber: 4.0 Consensus size: 17
106294298 CAATGATATG
106294308 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
106294325 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
106294343 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
106294360 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
106294377 TACTATCTTG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
17 33 0.67
18 16 0.33
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:106294346 original size:35 final size:36
Alignment explanation
Indices: 106294300--106294377 Score: 149
Period size: 35 Copynumber: 2.2 Consensus size: 36
106294290 ATAATCTTCA
106294300 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
106294336 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
106294371 ATGATAT
1 ATGATAT
106294378 ACTATCTTGG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 35 0.85
36 6 0.15
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.37
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:106295924 original size:51 final size:50
Alignment explanation
Indices: 106295864--106296102 Score: 187
Period size: 51 Copynumber: 4.7 Consensus size: 50
106295854 AGTTTCTTCT
* *
106295864 CAAGCTACTTTATCCAGGTTACTTAGGGGTGCTCCTATGTCCACTTCTCCG
1 CAAGATACTTTATCCAGGTTACATAGGGGT-CTCCTATGTCCACTTCTCCG
* * * *
106295915 CAA-AGTACTTTTTTCGGGTTACATAGGGGTTCACCTATGTCCACTTCTCCG
1 CAAGA-TACTTTATCCAGGTTACATAGGGG-TCTCCTATGTCCACTTCTCCG
* * ** ** * *
106295966 CAAGGTACTTTCTCTGGGTTACATAGGAATTTACCTATGTCCACTTCTCCT
1 CAAGATACTTTATCCAGGTTACATAGGGGTCT-CCTATGTCCACTTCTCCG
* * * * ** *
106296017 CCAGCTACTTTATCC-GTGTTACATAGGGGT-TCCTGTATCCGTTTCTCCT
1 CAAGATACTTTATCCAG-GTTACATAGGGGTCTCCTATGTCCACTTCTCCG
* * *
106296066 CAAGATACTTTATTCAAGTTACTTAGGGGTGCTCCTA
1 CAAGATACTTTATCCAGGTTACATAGGGGT-CTCCTA
106296103 AGTCAGCTCC
Statistics
Matches: 149, Mismatches: 31, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
49 38 0.26
50 3 0.02
51 107 0.72
52 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (50 bp):
CAAGATACTTTATCCAGGTTACATAGGGGTCTCCTATGTCCACTTCTCCG
Found at i:106298465 original size:25 final size:25
Alignment explanation
Indices: 106298431--106298482 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
106298421 AAGACTAATT
106298431 GACTAAGACAATGGAATCAATGGTA
1 GACTAAGACAATGGAATCAATGGTA
* *
106298456 GACTGAGACAATGGAGTCAATGGTA
1 GACTAAGACAATGGAATCAATGGTA
106298481 GA
1 GA
106298483 GGGCAGCTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.29, T:0.19
Consensus pattern (25 bp):
GACTAAGACAATGGAATCAATGGTA
Found at i:106302635 original size:29 final size:29
Alignment explanation
Indices: 106302603--106302710 Score: 126
Period size: 29 Copynumber: 3.7 Consensus size: 29
106302593 TCCCATTTTT
*
106302603 CTAGGGTTCACACATAGGCTCGCATGTAC
1 CTAGGGTTCGCACATAGGCTCGCATGTAC
** * *
106302632 CTAGGGTTCGCATGTAGGCTCGCAAGTTC
1 CTAGGGTTCGCACATAGGCTCGCATGTAC
*
106302661 CTAGGGTTCGTACATAGGCTCGCATGTAC
1 CTAGGGTTCGCACATAGGCTCGCATGTAC
* * * *
106302690 TTAAGGTTCGTACGTAGGCTC
1 CTAGGGTTCGCACATAGGCTC
106302711 ACAAAATCCT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (29 bp):
CTAGGGTTCGCACATAGGCTCGCATGTAC
Found at i:106302721 original size:58 final size:58
Alignment explanation
Indices: 106302603--106302723 Score: 161
Period size: 58 Copynumber: 2.1 Consensus size: 58
106302593 TCCCATTTTT
* * * **
106302603 CTAGGGTTCACACATAGGCTCGCATGTACCTAGGGTTCGCATGTAGGCTCGCAAGTTC
1 CTAGGGTTCACACATAGGCTCGCATGTACCTAAGGTTCGCACGTAGGCTCACAAAATC
** * *
106302661 CTAGGGTTCGTACATAGGCTCGCATGTACTTAAGGTTCGTACGTAGGCTCACAAAATC
1 CTAGGGTTCACACATAGGCTCGCATGTACCTAAGGTTCGCACGTAGGCTCACAAAATC
106302719 CTAGG
1 CTAGG
106302724 TTTTGCATGG
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (58 bp):
CTAGGGTTCACACATAGGCTCGCATGTACCTAAGGTTCGCACGTAGGCTCACAAAATC
Found at i:106303027 original size:23 final size:23
Alignment explanation
Indices: 106302982--106303027 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
106302972 TTGCAAGTAT
*
106302982 TAACATGTAAAAGGGTTCACATG
1 TAACATGTAAAAGGGGTCACATG
* * *
106303005 TAACATGTATAGGGGGTCGCATG
1 TAACATGTAAAAGGGGTCACATG
106303028 AAATTGTAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (23 bp):
TAACATGTAAAAGGGGTCACATG
Found at i:106303984 original size:23 final size:23
Alignment explanation
Indices: 106303940--106303984 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
106303930 CGCAAGTATC
*
106303940 AACATGCAAAGGGGTTCACATGT
1 AACATGCAAAGGGGATCACATGT
* * *
106303963 AACATGTATAGGGGATCGCATG
1 AACATGCAAAGGGGATCACATG
106303985 AAATAGTAGG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (23 bp):
AACATGCAAAGGGGATCACATGT
Found at i:106306875 original size:31 final size:30
Alignment explanation
Indices: 106306762--106306875 Score: 158
Period size: 31 Copynumber: 3.8 Consensus size: 30
106306752 TCAGTTACCA
* *
106306762 CATATACTGGGCCGAAGCC-TTTAATCATT
1 CATATACTGGGCCGAAGCCTTTTCATTATT
*
106306791 CATATACTGGGCCGAAGCCTTTCCATTATT
1 CATATACTGGGCCGAAGCCTTTTCATTATT
* *
106306821 CATACCACTGGGCCGAAGCCTTTTCATTACT
1 CATA-TACTGGGCCGAAGCCTTTTCATTATT
106306852 CATATCACTGGGCCGAAGCCTTTT
1 CATAT-ACTGGGCCGAAGCCTTTT
106306876 AACTGTAAAC
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
29 19 0.25
30 11 0.15
31 45 0.60
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.31
Consensus pattern (30 bp):
CATATACTGGGCCGAAGCCTTTTCATTATT
Found at i:106307215 original size:20 final size:20
Alignment explanation
Indices: 106307190--106307276 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
106307180 TTATGAATAC
*
106307190 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
106307210 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
106307230 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
**
106307250 ATCATCAGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
106307270 ATCATGT
1 ATCATGT
106307277 ATATCAGAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
20 57 0.97
21 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:106307223 original size:11 final size:11
Alignment explanation
Indices: 106307190--106307245 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
106307180 TTATGAATAC
106307190 ATCATGTGCAT
1 ATCATGTGCAT
*
106307201 ATC--GTACAT
1 ATCATGTGCAT
106307210 ATCATGTGCAT
1 ATCATGTGCAT
*
106307221 ATCA--TACAT
1 ATCATGTGCAT
*
106307230 GTCATGTGCAT
1 ATCATGTGCAT
106307241 ATCAT
1 ATCAT
106307246 ACATATCATC
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:106307261 original size:11 final size:10
Alignment explanation
Indices: 106307197--106307266 Score: 56
Period size: 11 Copynumber: 7.0 Consensus size: 10
106307187 TACATCATGT
*
106307197 GCATATCGTA
1 GCATATCATA
*
106307207 -CATATCATGT
1 GCATATCAT-A
106307217 GCATATCATA
1 GCATATCATA
* *
106307227 -CATGTCATGT
1 GCATATCAT-A
106307237 GCATATCATA
1 GCATATCATA
106307247 -CATATCATCA
1 GCATATCAT-A
106307257 GCATATCATA
1 GCATATCATA
106307267 TCAATCATGT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
9 22 0.47
10 2 0.04
11 23 0.49
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (10 bp):
GCATATCATA
Found at i:106307341 original size:25 final size:25
Alignment explanation
Indices: 106307313--106307360 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
106307303 ATAATTAAAC
* * *
106307313 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
106307338 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
106307361 CATAAAGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:106312379 original size:1 final size:1
Alignment explanation
Indices: 106312373--106312412 Score: 53
Period size: 1 Copynumber: 40.0 Consensus size: 1
106312363 GAAGGTTGAT
* * *
106312373 AAAAAAAAAAAAAAAAAAAAAGAAAAAAACATAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
106312413 CATTTTAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.93, C:0.03, G:0.03, T:0.03
Consensus pattern (1 bp):
A
Found at i:106315238 original size:17 final size:16
Alignment explanation
Indices: 106315211--106315246 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
106315201 ATTAATGGAC
*
106315211 TATTTTTTATTATATT
1 TATTTTTTATTAAATT
106315227 TATTTATTTATTAAATT
1 TATTT-TTTATTAAATT
106315244 TAT
1 TAT
106315247 GGCCCAGGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TATTTTTTATTAAATT
Found at i:106317130 original size:29 final size:29
Alignment explanation
Indices: 106317094--106317201 Score: 126
Period size: 29 Copynumber: 3.7 Consensus size: 29
106317084 CCCATTTTTT
*
106317094 CTAGGGTTCACACATAGGCTCGCATGTAC
1 CTAGGGTTCGCACATAGGCTCGCATGTAC
** * *
106317123 CTAGGGTTCGCATGTAGGCTCGCAAGTTC
1 CTAGGGTTCGCACATAGGCTCGCATGTAC
*
106317152 CTAGGGTTCGTACATAGGCTCGCATGTAC
1 CTAGGGTTCGCACATAGGCTCGCATGTAC
* * * *
106317181 TTAAGGTTCGTACGTAGGCTC
1 CTAGGGTTCGCACATAGGCTC
106317202 ACCAAAATCC
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (29 bp):
CTAGGGTTCGCACATAGGCTCGCATGTAC
Found at i:106325346 original size:18 final size:18
Alignment explanation
Indices: 106325216--106325381 Score: 61
Period size: 18 Copynumber: 8.7 Consensus size: 18
106325206 TATAAATTCA
* *
106325216 ATATGTTTTAAATATTATAT
1 ATAT-TTTTATATTTTAT-T
106325236 ATATTCTTTATATTCTTTATT
1 ATATT-TTTATA-T-TTTATT
* * *
106325257 ATATTATATACATTTTTTT
1 ATATT-TTTATATTTTATT
*
106325276 ATAAATTTTATTATATGTTA-T
1 AT--A-TTT-TTATATTTTATT
* *
106325297 ATTTTTATTATATGTTATT
1 ATATTT-TTATATTTTATT
106325316 -TATTCCATTTATATTTTATT
1 ATATT---TTTATATTTTATT
*
106325336 ATATTTTTATATTATA-T
1 ATATTTTTATATTTTATT
* **
106325353 AAATTAAT-TATTTTATT
1 ATATTTTTATATTTTATT
*
106325370 ATATGTTTATAT
1 ATATTTTTATAT
106325382 GTAAATTTAC
Statistics
Matches: 110, Mismatches: 22, Indels: 30
0.68 0.14 0.19
Matches are distributed among these distances:
16 6 0.05
17 11 0.10
18 30 0.27
19 9 0.08
20 21 0.19
21 21 0.19
22 12 0.11
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (18 bp):
ATATTTTTATATTTTATT
Found at i:106325379 original size:16 final size:16
Alignment explanation
Indices: 106325280--106325379 Score: 73
Period size: 16 Copynumber: 6.1 Consensus size: 16
106325270 TTTTTTATAA
106325280 ATTTTATTATATGTTAT
1 ATTTTATTATATGTT-T
106325297 ATTTTTATTATATG-TT
1 A-TTTTATTATATGTTT
**
106325313 A-TTTATTCCAT-TTAT
1 ATTTTATTATATGTT-T
*
106325328 ATTTTATTATATTTTT
1 ATTTTATTATATGTTT
* *
106325344 ATATTATATAAAT-TAATT
1 ATTTTAT-TATATGT--TT
106325362 ATTTTATTATATGTTT
1 ATTTTATTATATGTTT
106325378 AT
1 AT
106325380 ATGTAAATTT
Statistics
Matches: 66, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
14 9 0.14
15 2 0.03
16 22 0.33
17 12 0.18
18 21 0.32
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (16 bp):
ATTTTATTATATGTTT
Found at i:106325424 original size:21 final size:23
Alignment explanation
Indices: 106325395--106325442 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
106325385 AATTTACTTA
*
106325395 ATATATCATTT-TTAT-TATTTT
1 ATATATCATTTATTATATAGTTT
*
106325416 ATATTTCATTTATTATATAGTTT
1 ATATATCATTTATTATATAGTTT
106325439 ATAT
1 ATAT
106325443 CATTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 10 0.43
22 4 0.17
23 9 0.39
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (23 bp):
ATATATCATTTATTATATAGTTT
Found at i:106325712 original size:27 final size:30
Alignment explanation
Indices: 106325642--106325712 Score: 71
Period size: 31 Copynumber: 2.5 Consensus size: 30
106325632 TATTCATGTT
* *
106325642 TCAT-TATATT-TTATTTATGTATTTTTTA
1 TCATATATATTATTATTTATATATTATTTA
106325670 TCATATATCATATATTA-TTATATATTATTT-
1 TCATATAT-AT-TATTATTTATATATTATTTA
106325700 TC-TATATATTATT
1 TCATATATATTATT
106325713 CCCTTATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
27 4 0.11
28 6 0.16
29 8 0.22
30 4 0.11
31 12 0.32
32 3 0.08
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (30 bp):
TCATATATATTATTATTTATATATTATTTA
Found at i:106327498 original size:25 final size:25
Alignment explanation
Indices: 106327464--106327515 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
106327454 TCAGCTGCCC
106327464 TCTACCATTGACTCCATTGTCTCAG
1 TCTACCATTGACTCCATTGTCTCAG
* *
106327489 TCTACCATTGATTCCATTGTCTTAG
1 TCTACCATTGACTCCATTGTCTCAG
106327514 TC
1 TC
106327516 AATTAGTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.19, C:0.29, G:0.12, T:0.40
Consensus pattern (25 bp):
TCTACCATTGACTCCATTGTCTCAG
Found at i:106329983 original size:51 final size:50
Alignment explanation
Indices: 106329897--106330063 Score: 192
Period size: 51 Copynumber: 3.3 Consensus size: 50
106329887 CGGATACAGG
* * * * *
106329897 AACCCCTATGTAACACGATAAAGTAGCTGGAGGAGAAGTGGACATAGGTA
1 AACCCCTATGTAACCCGAAAAAGTACCTTGCGGAGAAGTGGACATAGGTA
** * *
106329947 AATTCCTATGTAACCCAGAGAAAGTACCTTGCGGAGAAGTGGACATAGGTG
1 AACCCCTATGTAACCC-GAAAAAGTACCTTGCGGAGAAGTGGACATAGGTA
*
106329998 AACCCCTATGTAACCCGAAAAAAGTACTTTGCGGAGAAGTGGACATAGG-A
1 AACCCCTATGTAACCCG-AAAAAGTACCTTGCGGAGAAGTGGACATAGGTA
* *
106330048 GCACCCCTAAGTAACC
1 -AACCCCTATGTAACC
106330064 TGGATAAAGT
Statistics
Matches: 99, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
50 14 0.14
51 85 0.86
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (50 bp):
AACCCCTATGTAACCCGAAAAAGTACCTTGCGGAGAAGTGGACATAGGTA
Found at i:106330095 original size:102 final size:100
Alignment explanation
Indices: 106329842--106330115 Score: 252
Period size: 102 Copynumber: 2.7 Consensus size: 100
106329832 GGAGCTGACT
* * * * * *
106329842 TAGGAGCACCCCTAAGTAACTTGAATAAAGTATCTTGAGGAGAAACGGATACAG-GAACCCCTAT
1 TAGGAGCACCCCTAAGTAACCTGGATAAAGTACCTTGAGGAGAAACTGACATAGTGAACCCCTAT
* *
106329906 GTAACACGATAAAGTAGCTGGAGGAGAAGTGGACA
66 GTAACCCGAAAAAGTAGCTGGAGGAGAAGTGGACA
* ** * ** * * *
106329941 TAGGTA-AATTCCTATGTAACCCAGAGAAAGTACCTTGCGGAG-AAGTGGACATAGGTGAACCCC
1 TAGG-AGCACCCCTAAGTAACCTGGATAAAGTACCTTGAGGAGAAACT-GACATA-GTGAACCCC
* *
106330004 TATGTAACCCGAAAAAAGTA-CTTTGCGGAGAAGTGGACA
63 TATGTAACCCG-AAAAAGTAGC-TGGAGGAGAAGTGGACA
* * *
106330043 TAGGAGCACCCCTAAGTAACCTGGATAAAGTAGCTTGAGAAGAAACTAACATAGTAGAACCCCTA
1 TAGGAGCACCCCTAAGTAACCTGGATAAAGTACCTTGAGGAGAAACTGACATAGT-GAACCCCT-
106330108 AT-TAACCC
64 ATGTAACCC
106330116 ATGTTGAGAC
Statistics
Matches: 134, Mismatches: 31, Indels: 17
0.74 0.17 0.09
Matches are distributed among these distances:
98 2 0.01
99 33 0.25
100 2 0.01
101 21 0.16
102 71 0.53
103 5 0.04
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (100 bp):
TAGGAGCACCCCTAAGTAACCTGGATAAAGTACCTTGAGGAGAAACTGACATAGTGAACCCCTAT
GTAACCCGAAAAAGTAGCTGGAGGAGAAGTGGACA
Found at i:106331588 original size:17 final size:17
Alignment explanation
Indices: 106331568--106331636 Score: 120
Period size: 17 Copynumber: 4.0 Consensus size: 17
106331558 CAAGATAGTA
106331568 TATCATATCTAAGATTG
1 TATCATATCTAAGATTG
106331585 TATCATATCTAAGATTG
1 TATCATATCTAAGATTG
*
106331602 CAATCATATCTAAGATTG
1 -TATCATATCTAAGATTG
106331620 TATCATATCTAAGATTG
1 TATCATATCTAAGATTG
106331637 CATATCATTG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
17 33 0.67
18 16 0.33
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (17 bp):
TATCATATCTAAGATTG
Found at i:106331612 original size:35 final size:36
Alignment explanation
Indices: 106331567--106331644 Score: 149
Period size: 35 Copynumber: 2.2 Consensus size: 36
106331557 CCAAGATAGT
106331567 ATATCATATCTAAGATTGTATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGTATCATATCTAAGATTGC
106331603 A-ATCATATCTAAGATTGTATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGTATCATATCTAAGATTGC
106331638 ATATCAT
1 ATATCAT
106331645 TGAAGATTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 35 0.85
36 6 0.15
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (36 bp):
ATATCATATCTAAGATTGTATCATATCTAAGATTGC
Found at i:106332579 original size:288 final size:286
Alignment explanation
Indices: 106332058--106332864 Score: 1152
Period size: 288 Copynumber: 2.8 Consensus size: 286
106332048 TTCCCTGACA
* * *
106332058 ATAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGCGAAAGCCAAATCAGCTATGT
1 ATAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAG-CAAATCAGCTATGT
* * *
106332123 CTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTATTTGAGAACATCTGA
65 CTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGG-TCTGTTTGAGAACATCTGA
* * * *
106332188 GAGTCAAATCTGCTATGTCCTCAATTTATTCCTTGTAAATACAAGAATGCCAAATCATCTTGGAT
129 GAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* * * *
106332253 CTGCTTCAGTATAAACATCTGAAGCTTAGATCTGCTATGTGTCTAC-TCTCCGTCGATA-TAGAG
194 CTACTTCAGTATAAACATCTGAAGCTTAGATATGCTATGTATCTACTTC-CCATCGA-AGTAGAG
*
106332316 ATGCCAAACTTCGATTCATTCTCTGACAAT
257 ATACCAAACTTCGATTCATTCTCTGACAAT
* *
106332346 ATAGAGACGACAAATTATCTTAGATTTGCTTCATCGTAAACACGTGAAAGTCAAATCAGCTATGT
1 ATAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAG-CAAATCAGCTATGT
*
106332411 CTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTAGGTCTGTTTGAGAACATCTGA
65 CTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT-GGTCTGTTTGAGAACATCTGA
* * *
106332476 GAGTTAAATCTGCTATGTCCTCGATTTGTTTCTTGTATACACAAGAATGCCAAACCATCTTGGAT
129 GAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGGAT
* *
106332541 CTACTTCAGTATAAACATCTGAAGGTTAGATATGCTATGTATCTACTTCCCATCGAAGTGGAGAT
194 CTACTTCAGTATAAACATCTGAAGCTTAGATATGCTATGTATCTACTTCCCATCGAAGTAGAGAT
* * * **
106332606 ACCAGATTTTGATTTGTTCTCTGACAAT
259 ACCAAACTTCGATTCATTCTCTGACAAT
* * * *
106332634 ACAGAGATGACAAATCATCTTAGACTTGCTTTATCGTAAACACATGAAAGCAAATCAGCTATGTC
1 ATAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCAAATCAGCTATGTC
* * *
106332699 TTTGATTTGTTCTTTATAAGCACAAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATCTGAG
66 TTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTG-GTCTGTTTGAGAACATCTGAG
*
106332764 AATCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGGATC
130 AGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGGAT-
* * * *
106332829 CTACTTCAGTCTAATCGTCTGAAAGC-TAGATCTGCT
194 CTACTTCAGTATAAACATCTG-AAGCTTAGATATGCT
106332865 CTGTCTGAGA
Statistics
Matches: 465, Mismatches: 48, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
286 1 0.00
287 135 0.29
288 322 0.69
289 7 0.02
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (286 bp):
ATAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCAAATCAGCTATGTC
TTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGTCTGTTTGAGAACATCTGAGA
GTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTGGATCT
ACTTCAGTATAAACATCTGAAGCTTAGATATGCTATGTATCTACTTCCCATCGAAGTAGAGATAC
CAAACTTCGATTCATTCTCTGACAAT
Found at i:106333017 original size:119 final size:119
Alignment explanation
Indices: 106332750--106333532 Score: 1289
Period size: 119 Copynumber: 6.6 Consensus size: 119
106332740 TGAGTCTGTT
* * *
106332750 TGAGAACATCTGAGAATCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATGCCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* * * * *
106332815 AATCATCTTGGATCCTACTTCAGTCTAATCGTCTGAAAGCTAGATCTGCTCTGTC
66 AATCATCTTGGAT-CTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
*
106332870 TGAGAACATCTTAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* *
106332935 AGTCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTT
66 AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
*
106332989 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACATAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* **
106333054 AATCATCTTGGATCTACTTCAGTATAGACATCTGAAGGCTAGATCAACTATGTC
66 AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
106333108 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
*
106333173 AATCATCTTGGATCTACTTCAGTATAGACATCTGAAGGCTAGATCTGCTATGTC
66 AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
* *
106333227 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTATAAACACAAAAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* * **
106333292 AATCATCTTGGATCTACTTCAGTATAAACATTTGAAGGCTAGATCTGTTAAATC
66 AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
*
106333346 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
* **
106333411 AATC-TCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATTTGCTAAATC
66 AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
* * *
106333464 TGAGAACATCTAAGAGTCAAATCTACTATGTCCTCGATTTGTTCCCTGTAAACACAAGAATACCA
1 TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
106333529 AATC
66 AATC
106333533 TTGTTTCTTT
Statistics
Matches: 625, Mismatches: 38, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
118 111 0.18
119 441 0.71
120 73 0.12
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (119 bp):
TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCA
AATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTAGATCTGCTATGTC
Found at i:106334463 original size:11 final size:10
Alignment explanation
Indices: 106334446--106334480 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
106334436 ATTTTTTTCA
106334446 TTTTTCTTTT
1 TTTTTCTTTT
106334456 TCTTTTCTTTT
1 T-TTTTCTTTT
*
106334467 TTTCTCTTTT
1 TTTTTCTTTT
106334477 TTTT
1 TTTT
106334481 GAAATAGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:106334468 original size:13 final size:12
Alignment explanation
Indices: 106334437--106334480 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
106334427 GGCCTCTCCA
106334437 TTTTTTTCATTTT
1 TTTTTTTC-TTTT
*
106334450 TCTTTTTCTTTT
1 TTTTTTTCTTTT
106334462 CTTTTTTTCTCTTT
1 -TTTTTTTCT-TTT
106334476 TTTTT
1 TTTTT
106334481 GAAATAGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 4 0.15
13 20 0.74
14 3 0.11
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:106339512 original size:27 final size:27
Alignment explanation
Indices: 106339482--106339535 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
106339472 TCGAAACTAA
106339482 GCTCGTCTTTCAAAAATTTCTATCTCG
1 GCTCGTCTTTCAAAAATTTCTATCTCG
*
106339509 GCTCGTCTTTCGAAAATTTCTATCTCG
1 GCTCGTCTTTCAAAAATTTCTATCTCG
106339536 AAACAACAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.41
Consensus pattern (27 bp):
GCTCGTCTTTCAAAAATTTCTATCTCG
Found at i:106340614 original size:17 final size:17
Alignment explanation
Indices: 106340561--106340694 Score: 160
Period size: 17 Copynumber: 7.6 Consensus size: 17
106340551 AATCATATCT
106340561 TCTAAGATTGTATATCATA
1 TCTAAGATTG--TATCATA
* *
106340580 TCTGAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
*
106340598 TCTATGATTGTATCATA
1 TCTAAGATTGTATCATA
* *
106340615 CCTAAGATTGCAATCATA
1 TCTAAGATTG-TATCATA
106340633 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
*
106340650 TCTAAGATTGCATTCATA
1 TCTAAGATTGTA-TCATA
*
106340668 TTTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
106340685 TCTAAGATTG
1 TCTAAGATTG
106340695 CATATCATTG
Statistics
Matches: 98, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
17 45 0.46
18 44 0.45
19 9 0.09
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:106340623 original size:35 final size:35
Alignment explanation
Indices: 106340561--106340702 Score: 212
Period size: 35 Copynumber: 4.0 Consensus size: 35
106340551 AATCATATCT
*
106340561 TCTAAGATTGTATATCATATCTGAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
* *
106340598 TCTATGATTGTATCATACCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
106340633 TCTAAGATTGTATCATATCTAAGATTGCATTCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
106340668 TTTAAGATTGTATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
106340703 TGAACATTAT
Statistics
Matches: 96, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
35 83 0.86
36 4 0.04
37 9 0.09
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:106345914 original size:28 final size:25
Alignment explanation
Indices: 106345883--106345945 Score: 72
Period size: 28 Copynumber: 2.4 Consensus size: 25
106345873 AAAGCGTTTA
106345883 ATAAATACTAAAACGTAGTATAATATAT
1 ATAAATACTAAAAC-T-GTATAATA-AT
* *
106345911 ATAAATAATAAAACTTTATAATAAT
1 ATAAATACTAAAACTGTATAATAAT
*
106345936 ATACATACTA
1 ATAAATACTA
106345946 TATGTTTAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 10 0.32
26 7 0.23
27 1 0.03
28 13 0.42
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (25 bp):
ATAAATACTAAAACTGTATAATAAT
Found at i:106346361 original size:20 final size:21
Alignment explanation
Indices: 106346316--106346369 Score: 83
Period size: 20 Copynumber: 2.6 Consensus size: 21
106346306 ATTAATAAAA
106346316 ATATAAAATAATACACATACC
1 ATATAAAATAATACACATACC
*
106346337 ATATAAAATAATACA-ATATC
1 ATATAAAATAATACACATACC
*
106346357 ATATAATATAATA
1 ATATAAAATAATA
106346370 AAATTTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (21 bp):
ATATAAAATAATACACATACC
Found at i:106346365 original size:25 final size:24
Alignment explanation
Indices: 106346273--106346446 Score: 88
Period size: 25 Copynumber: 7.5 Consensus size: 24
106346263 ATTATCATTA
*
106346273 AAAAT-ATATAATACATA-CAT-T
1 AAAATAATATAATACATATAATAT
* *
106346294 AAAA-AATAT-TTA-AT-TAATAA
1 AAAATAATATAATACATATAATAT
* *
106346314 AAATATAAAATAATACACATACCATAT
1 AAA-ATAATATAATACATATA--ATAT
*
106346341 AAAATAATACAATATCATATAATAT
1 AAAATAATATAATA-CATATAATAT
* *
106346366 AATAA-AATTTAATAACATATAATTT
1 AA-AATAATATAAT-ACATATAATAT
106346391 ATAAATAA-ATAATA-ATA-AATAT
1 A-AAATAATATAATACATATAATAT
*
106346413 AATATAATAT-ATA-ATAT-ATAAGT
1 AAAATAATATAATACATATAAT-A-T
106346436 AAAATAATATA
1 AAAATAATATA
106346447 TACCATTTTA
Statistics
Matches: 116, Mismatches: 17, Indels: 37
0.68 0.10 0.22
Matches are distributed among these distances:
19 4 0.03
20 5 0.04
21 22 0.19
22 12 0.10
23 15 0.13
24 2 0.02
25 30 0.26
26 15 0.13
27 11 0.09
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.33
Consensus pattern (24 bp):
AAAATAATATAATACATATAATAT
Found at i:106346388 original size:10 final size:9
Alignment explanation
Indices: 106346339--106346444 Score: 76
Period size: 10 Copynumber: 11.3 Consensus size: 9
106346329 CACATACCAT
106346339 ATAAA-ATA
1 ATAAATATA
*
106346347 ATACAATATC
1 ATA-AATATA
106346357 ATATAATATA
1 ATA-AATATA
*
106346367 ATAAAATTTA
1 AT-AAATATA
106346377 ATAACATATA
1 ATAA-ATATA
**
106346387 ATTTATA-A
1 ATAAATATA
106346395 ATAAATAATA
1 ATAAAT-ATA
106346405 ATAAATATA
1 ATAAATATA
106346414 ATATAATAT-
1 ATA-AATATA
106346423 ATAATATATA
1 ATAA-ATATA
106346433 AGTAAA-ATA
1 A-TAAATATA
106346442 ATA
1 ATA
106346445 TATACCATTT
Statistics
Matches: 79, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
8 11 0.14
9 25 0.32
10 39 0.49
11 4 0.05
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (9 bp):
ATAAATATA
Found at i:106346408 original size:14 final size:13
Alignment explanation
Indices: 106346339--106346448 Score: 62
Period size: 14 Copynumber: 7.7 Consensus size: 13
106346329 CACATACCAT
106346339 ATAAA-ATAATACA
1 ATAAATATAATA-A
*
106346352 ATATCATATAATATA
1 ATA-AATATAATA-A
*
106346367 ATAAAATTTAATAA
1 AT-AAATATAATAA
*
106346381 CATATAAT-TTATAA
1 -ATA-AATATAATAA
106346395 ATAAATAATAATAA
1 ATAAAT-ATAATAA
*
106346409 ATATAATATAATAT
1 ATA-AATATAATAA
106346423 ATAATATATAAGTAAA
1 ATAA-ATATAA-T-AA
106346439 ATAATATATA
1 ATAA-ATATA
106346449 CCATTTTATA
Statistics
Matches: 78, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
12 3 0.04
13 7 0.09
14 31 0.40
15 25 0.32
16 12 0.15
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (13 bp):
ATAAATATAATAA
Found at i:106346430 original size:5 final size:5
Alignment explanation
Indices: 106346337--106346423 Score: 67
Period size: 5 Copynumber: 18.0 Consensus size: 5
106346327 TACACATACC
* * * * *
106346337 ATATA AAATA ATACA ATATC ATATA ATATA ATAAA ATTTA ATA-A CATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA -ATATA
*
106346387 AT-TT ATA-A ATA-A ATAATA ATA-A ATATA ATATA ATATA
1 ATATA ATATA ATATA AT-ATA ATATA ATATA ATATA ATATA
106346424 TAATATATAA
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
4 14 0.22
5 46 0.72
6 4 0.06
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (5 bp):
ATATA
Found at i:106348158 original size:87 final size:86
Alignment explanation
Indices: 106348061--106348507 Score: 228
Period size: 87 Copynumber: 5.1 Consensus size: 86
106348051 TGAAAGCCAA
* *
106348061 ATCTGCTATGTCTTCAATTTACTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTT
1 ATCTACTATGTCTTCAATTT-CTCCTTGTAAACACAAGGACGCCAAATCATCTTGGATCTGCTTT
106348126 AGTATAAACATCTGAAGGTTAG
65 AGTATAAACATCTGAAGGTTAG
* * * * ** *
106348148 GTCTACTATGT-GTC--TGCTCTCC--GTCAAATA-TGGAGACGCCAGATCTGTTATCTTGGATC
1 ATCTACTATGTCTTCAAT-TTCTCCTTGT-AAACACAAG-GACGCCAAATC----ATCTTGGATC
* * *
106348207 TACTTTAATGTGA-AAACATCTAAAAGTCT-G
59 TGCTTT-A-GT-ATAAACATCTGAAGGT-TAG
* * *
106348237 ATCTTCTATGTCTTCAATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTGGATCTGCTTC
1 ATCTACTATGTCTTCAATTT-CTCCTTGTAAACACAAGGACGCCAAATCATCTTGGATCTGCTTT
106348302 AGTATAAACATCTGAAGGTTAG
65 AGTATAAACATCTGAAGGTTAG
* * * * * * ** *
106348324 TTCTGC-ATGT-GTC--TGCTCTCC--GTCGAATA-TGGAGACGCCAGATCTGTTATCTTGGATC
1 ATCTACTATGTCTTCAAT-TTCTCCTTGT-AAACACAAG-GACGCCAAATC----ATCTTGGATC
* * *
106348382 TGCTTTGATGTGA-AAACATCTAAAAGTCAG
59 TGCTTT-A-GT-ATAAACATCTGAAGGTTAG
* * * * * * *
106348412 ATCT-GT-TATCTTCGATTTGCTCATTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTC
1 ATCTACTATGTCTTCAATTT-CTCCTTGTAAACACAAGGACGCCAAATCATCTTGGATCTGCTTT
*
106348475 AGTATAAACATCTAAAGGTTAG
65 AGTATAAACATCTGAAGGTTAG
*
106348497 ATCTGCTATGT
1 ATCTACTATGT
106348508 GTCTGCTCTC
Statistics
Matches: 262, Mismatches: 57, Indels: 82
0.65 0.14 0.20
Matches are distributed among these distances:
81 3 0.01
82 15 0.06
83 18 0.07
84 7 0.03
85 24 0.09
86 25 0.10
87 63 0.24
88 23 0.09
89 40 0.15
90 8 0.03
91 12 0.05
92 8 0.03
93 13 0.05
94 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (86 bp):
ATCTACTATGTCTTCAATTTCTCCTTGTAAACACAAGGACGCCAAATCATCTTGGATCTGCTTTA
GTATAAACATCTGAAGGTTAG
Found at i:106348574 original size:174 final size:174
Alignment explanation
Indices: 106348071--106348682 Score: 942
Period size: 174 Copynumber: 3.5 Consensus size: 174
106348061 ATCTGCTATG
* * * *
106348071 TCTTCAATTTACTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTTAGTATAAACA
1 TCTTCAATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
* * * *
106348136 TCTGAAGGTTAGGTCTACTATGTGTCTGCTCTCCGTCAAATATGGAGACGCCAGATCTGTTATCT
66 TCTAAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAGATCTGTTATCT
* *
106348201 TGGATCTACTTTAATGTGAAAACATCTAAAAGTCTGATCT-TCTA
131 TGGATCTACTTTGATGTGAAAACATCTAAAAGTCAGATCTGT-TA
106348245 TGTCTTCAATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTGGATCTGCTTCAGTATAAA
1 --TCTTCAATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTGGATCTGCTTCAGTATAAA
* *
106348310 CATCTGAAGGTTAGTTCTGC-ATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAGATCTGTTAT
64 CATCTAAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAGATCTGTTAT
*
106348374 CTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAGATCTGTTA
129 CTTGGATCTACTTTGATGTGAAAACATCTAAAAGTCAGATCTGTTA
* * *
106348420 TCTTCGATTTGCTCATTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
1 TCTTCAATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
* *
106348485 TCTAAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAATATGGAGATGCCAGATCTGTTATCT
66 TCTAAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAGATCTGTTATCT
*
106348550 TGGATCTACTTTGATGTGAAAACATCTATAAGTCAGATCTGTTA
131 TGGATCTACTTTGATGTGAAAACATCTAAAAGTCAGATCTGTTA
* *
106348594 TCTTCGATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTGGATCTGCTTCGATGTGA-GA
1 TCTTCAATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTGGATCTGCTTC-A-GT-ATAA
* *
106348658 ACATCCAAAGGTCAGATCTGCTATG
63 ACATCTAAAGGTTAGATCTGCTATG
106348683 CTTTAGCCTG
Statistics
Matches: 407, Mismatches: 24, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
173 78 0.19
174 139 0.34
175 85 0.21
176 104 0.26
177 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (174 bp):
TCTTCAATTTGCTCCTTGTAAACACAAGAACGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
TCTAAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAGATCTGTTATCT
TGGATCTACTTTGATGTGAAAACATCTAAAAGTCAGATCTGTTA
Found at i:106348637 original size:87 final size:87
Alignment explanation
Indices: 106348197--106348677 Score: 300
Period size: 87 Copynumber: 5.5 Consensus size: 87
106348187 CAGATCTGTT
* * * * *
106348197 ATCTTGGATCTACTTTAATGTGAAAACATCTAAAAGTCTGATCT-TCTATGTCTTCAATTTGCTC
1 ATCTTGGATCTGCTTTGATGTGAAAACATCTAAAGGTCAGATCTGT-TA--TCTTCGATTTGCTC
*
106348261 CTTGTAAACACAAGAACGCCAAATC
63 CTTGTAAACACAAGAATGCCAAATC
* * * * * * *
106348286 ATCTTGGATCTGC-TTCA-GT-ATAAACATCTGAAGGTTAGTTCTG-CAT-GT-G-TCTGCT-CT
1 ATCTTGGATCTGCTTTGATGTGA-AAACATCTAAAGGTCAGATCTGTTATCTTCGATTTGCTCCT
* * * ** * *
106348343 CCGTCGAATA-TGGAGACGCCAGATC
65 -TGT-AAACACAAGA-ATGCCAAATC
*
106348368 TGTTATCTTGGATCTGCTTTGATGTGAAAACATCTAAAAGTCAGATCTGTTATCTTCGATTTGCT
1 ----ATCTTGGATCTGCTTTGATGTGAAAACATCTAAAGGTCAGATCTGTTATCTTCGATTTGCT
*
106348433 CATTGTAAACACAAGAATGCCAAATC
62 CCTTGTAAACACAAGAATGCCAAATC
* * * * *
106348459 ATCTTGGATCTGC-TTCA-GT-ATAAACATCTAAAGGTTAGATCTGCTAT-GT-G-TCTGCTCTC
1 ATCTTGGATCTGCTTTGATGTGA-AAACATCTAAAGGTCAGATCTGTTATCTTCGATTTG--CTC
* * ** *
106348518 CATCG--AATA-TGGAGATGCCAGATC
63 C-TTGTAAACACAAGA-ATGCCAAATC
*
106348542 TGTTATCTTGGATCTACTTTGATGTGAAAACATCTATAA-GTCAGATCTGTTATCTTCGATTTGC
1 ----ATCTTGGATCTGCTTTGATGTGAAAACATCTA-AAGGTCAGATCTGTTATCTTCGATTTGC
*
106348606 TCCTTGTAAACACAAGAACGCCAAATC
61 TCCTTGTAAACACAAGAATGCCAAATC
* * *
106348633 ATCTTGGATCTGCTTCGATGTGAGAACATCCAAAGGTCAGATCTG
1 ATCTTGGATCTGCTTTGATGTGAAAACATCTAAAGGTCAGATCTG
106348678 CTATGCTTTA
Statistics
Matches: 293, Mismatches: 61, Indels: 78
0.68 0.14 0.18
Matches are distributed among these distances:
80 2 0.01
81 9 0.03
82 17 0.06
83 14 0.05
84 6 0.02
85 27 0.09
86 20 0.07
87 84 0.29
88 26 0.09
89 40 0.14
90 9 0.03
91 24 0.08
92 14 0.05
93 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (87 bp):
ATCTTGGATCTGCTTTGATGTGAAAACATCTAAAGGTCAGATCTGTTATCTTCGATTTGCTCCTT
GTAAACACAAGAATGCCAAATC
Found at i:106349678 original size:1 final size:1
Alignment explanation
Indices: 106349667--106349736 Score: 50
Period size: 1 Copynumber: 70.0 Consensus size: 1
106349657 GGCCTCTCCA
* * * * * * * * * *
106349667 TTTTTTCTTTTTTTTTCTCTTTTTTCTTTTTATTTTTTTCTTTTCTTTTTTCTTTTCTTTTTCTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
106349732 TTTTT
1 TTTTT
106349737 GAAATAGAAG
Statistics
Matches: 49, Mismatches: 20, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.01, C:0.13, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:106349687 original size:12 final size:11
Alignment explanation
Indices: 106349667--106349736 Score: 88
Period size: 11 Copynumber: 6.3 Consensus size: 11
106349657 GGCCTCTCCA
106349667 TTTTTTCTTTT
1 TTTTTTCTTTT
106349678 TTTTTCTCTTTT
1 TTTTT-TCTTTT
* *
106349690 TTCTTT-TTAT
1 TTTTTTCTTTT
106349700 TTTTTTCTTTT
1 TTTTTTCTTTT
106349711 CTTTTTTCTTTT
1 -TTTTTTCTTTT
*
106349723 CTTTTTCTTTT
1 TTTTTTCTTTT
106349734 TTT
1 TTT
106349737 GAAATAGAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
10 8 0.16
11 21 0.42
12 21 0.42
ACGTcount: A:0.01, C:0.13, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:106349691 original size:19 final size:18
Alignment explanation
Indices: 106349667--106349736 Score: 90
Period size: 19 Copynumber: 3.8 Consensus size: 18
106349657 GGCCTCTCCA
106349667 TTTTTTCTTTTTTTTTCTC
1 TTTTTTCTTTTTTTTT-TC
106349686 TTTTTTCTTTTTATTTTT-
1 TTTTTTCTTTTT-TTTTTC
106349704 TTCTTTTCTTTTTTCTTTTC
1 TT-TTTTCTTTTTT-TTTTC
106349724 -TTTTTCTTTTTTT
1 TTTTTTCTTTTTTT
106349737 GAAATAGAAG
Statistics
Matches: 47, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
17 1 0.02
18 14 0.30
19 28 0.60
20 4 0.09
ACGTcount: A:0.01, C:0.13, G:0.00, T:0.86
Consensus pattern (18 bp):
TTTTTTCTTTTTTTTTTC
Found at i:106349696 original size:26 final size:24
Alignment explanation
Indices: 106349667--106349736 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 24
106349657 GGCCTCTCCA
106349667 TTTTTTCTTTTTTTTTCTCTTTTTTC
1 TTTTTT-TTTTTTTTT-TCTTTTTTC
106349693 TTTTTATTTTTTTCTTTTCTTTTTTC
1 TTTTT-TTTTTTT-TTTTCTTTTTTC
106349719 TTTTCTTTTTCTTTTTTT
1 TTTT-TTTTT-TTTTTTT
106349737 GAAATAGAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
26 32 0.80
27 8 0.20
ACGTcount: A:0.01, C:0.13, G:0.00, T:0.86
Consensus pattern (24 bp):
TTTTTTTTTTTTTTTTCTTTTTTC
Found at i:106349702 original size:23 final size:21
Alignment explanation
Indices: 106349667--106349736 Score: 88
Period size: 23 Copynumber: 3.1 Consensus size: 21
106349657 GGCCTCTCCA
106349667 TTTTTTCTTTTTTTTTCTCTTT
1 TTTTTTCTTTTTTTTTCT-TTT
106349689 TTTCTTT-TTATTTTTTTCTTTT
1 TTT-TTTCTT-TTTTTTTCTTTT
106349711 CTTTTTTCTTTTCTTTTTCTTTT
1 -TTTTTTCTTTT-TTTTTCTTTT
106349734 TTT
1 TTT
106349737 GAAATAGAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
22 16 0.37
23 27 0.63
ACGTcount: A:0.01, C:0.13, G:0.00, T:0.86
Consensus pattern (21 bp):
TTTTTTCTTTTTTTTTCTTTT
Found at i:106353558 original size:82 final size:83
Alignment explanation
Indices: 106353455--106353626 Score: 301
Period size: 82 Copynumber: 2.1 Consensus size: 83
106353445 AACTTTCGGC
106353455 TTTCTCTCGTCATGCTTTTGGATAACCTTTGTTGGCTTGAATCTCTAGCAATTACATCATGTATT
1 TTTCTCTCGTCATGCTTTTGGATAACCTTTGTTGGCTTGAATCTCTAGCAATTACATCATGTATT
106353520 CCTCCATGGACTACCA-A
66 CCTCCATGGACTACCAGA
* * *
106353537 TTTCTCTCGTCGTGTTTTTGGATAACCTTTGTTGGCTTGAATCTCTAGTAATTACATCATGTATT
1 TTTCTCTCGTCATGCTTTTGGATAACCTTTGTTGGCTTGAATCTCTAGCAATTACATCATGTATT
*
106353602 CCTCCATGGACTACCAGC
66 CCTCCATGGACTACCAGA
106353620 TTTCTCT
1 TTTCTCT
106353627 TACCGTGTTT
Statistics
Matches: 85, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
82 78 0.92
83 7 0.08
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (83 bp):
TTTCTCTCGTCATGCTTTTGGATAACCTTTGTTGGCTTGAATCTCTAGCAATTACATCATGTATT
CCTCCATGGACTACCAGA
Found at i:106357058 original size:5 final size:5
Alignment explanation
Indices: 106357035--106357144 Score: 74
Period size: 5 Copynumber: 23.0 Consensus size: 5
106357025 TACACATACC
* * * * *
106357035 ATATA AAATA ATACA ATATC ATATA ATATA ATAAA ATTTA ATA-A CATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA -ATATA
*
106357085 AT-TT ATA-A ATA-A ATAATA ATA-A ATATA ATATA ATAT- ATA-A TATATA
1 ATATA ATATA ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA -ATATA
*
106357131 A-ATA AAATA ATATA
1 ATATA ATATA ATATA
106357145 TACCATTTTA
Statistics
Matches: 82, Mismatches: 13, Indels: 20
0.71 0.11 0.17
Matches are distributed among these distances:
4 21 0.26
5 56 0.68
6 5 0.06
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (5 bp):
ATATA
Found at i:106357059 original size:20 final size:21
Alignment explanation
Indices: 106357014--106357067 Score: 83
Period size: 20 Copynumber: 2.6 Consensus size: 21
106357004 AGTAATAAAA
106357014 ATATAAAATAATACACATACC
1 ATATAAAATAATACACATACC
*
106357035 ATATAAAATAATACA-ATATC
1 ATATAAAATAATACACATACC
*
106357055 ATATAATATAATA
1 ATATAAAATAATA
106357068 AAATTTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (21 bp):
ATATAAAATAATACACATACC
Found at i:106357063 original size:25 final size:24
Alignment explanation
Indices: 106357035--106357181 Score: 90
Period size: 25 Copynumber: 5.9 Consensus size: 24
106357025 TACACATACC
*
106357035 ATATAAAATAATACAATATCATATA
1 ATATAAAATAATATAATAT-ATATA
* *
106357060 ATATAATAA-AATTTAATAACATATA
1 ATATAA-AATAATATAAT-ATATATA
*
106357085 ATTTATAAATAA-ATAATA-ATA-A
1 ATATA-AAATAATATAATATATATA
*
106357107 ATATAATATAATAT-ATAATATATA
1 ATATAAAATAATATAAT-ATATATA
*
106357131 A-ATAAAATAATATATACCATTTTATATA
1 ATATAAAAT-A-ATATA--A-TATATATA
*
106357159 ACTATAAAATAAAATAATATATA
1 A-TATAAAATAATATAATATATA
106357182 AAGTATTTAA
Statistics
Matches: 95, Mismatches: 11, Indels: 32
0.69 0.08 0.23
Matches are distributed among these distances:
21 7 0.07
22 8 0.08
23 12 0.13
24 4 0.04
25 36 0.38
26 7 0.07
28 12 0.13
29 2 0.02
30 7 0.07
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (24 bp):
ATATAAAATAATATAATATATATA
Found at i:106357106 original size:14 final size:14
Alignment explanation
Indices: 106357089--106357142 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 14
106357079 CATATAATTT
106357089 ATAAATAAATAATA
1 ATAAATAAATAATA
106357103 ATAAAT--ATAAT-
1 ATAAATAAATAATA
*
106357114 AT-AATATATAATA
1 ATAAATAAATAATA
106357127 TATAAATAAAATAATA
1 -ATAAAT-AAATAATA
106357143 TATACCATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
10 3 0.09
11 2 0.06
12 10 0.30
14 8 0.24
15 3 0.09
16 7 0.21
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAAATAAATAATA
Found at i:106357119 original size:20 final size:20
Alignment explanation
Indices: 106357013--106357142 Score: 78
Period size: 20 Copynumber: 6.6 Consensus size: 20
106357003 AAGTAATAAA
*
106357013 AATATAA-AATAATACACATAC
1 AATATAATAATAATA-A-ATAT
*
106357034 CATATAA-AATAATACAATAT
1 AATATAATAATAATA-AATAT
* *
106357054 CATATAAT-ATAATAAAATTT
1 AATATAATAATAAT-AAATAT
**
106357074 AATA-ACAT-ATAATTTATA-
1 AATATA-ATAATAATAAATAT
106357092 AATA-AATAATAATAAATAT
1 AATATAATAATAATAAATAT
*
106357111 AATATAATATATAATATATA-
1 AATATAATA-ATAATAAATAT
*
106357131 AATAAAATAATA
1 AATATAATAATA
106357143 TATACCATTT
Statistics
Matches: 91, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
17 2 0.02
18 13 0.14
19 10 0.11
20 41 0.45
21 25 0.27
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
AATATAATAATAATAAATAT
Found at i:106357132 original size:35 final size:36
Alignment explanation
Indices: 106357093--106357182 Score: 114
Period size: 35 Copynumber: 2.6 Consensus size: 36
106357083 TAATTTATAA
*
106357093 ATAAATAATAATAA-ATATAATATAATATATAA-TAT
1 ATAAATAA-AATAATATATAACATAATATATAACTAT
* **
106357128 ATAAATAAAATAATATATACCATTTTATATAACTAT
1 ATAAATAAAATAATATATAACATAATATATAACTAT
106357164 A-AAATAAAATAATATATAA
1 ATAAATAAAATAATATATAA
106357183 AGTATTTAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
34 5 0.10
35 39 0.81
36 4 0.08
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (36 bp):
ATAAATAAAATAATATATAACATAATATATAACTAT
Found at i:106359006 original size:5 final size:5
Alignment explanation
Indices: 106358998--106359030 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
106358988 ATAAACTAAA
106358998 CGCAC CGCAC CGCAC CGCAC CGCAC CGCAC CGC
1 CGCAC CGCAC CGCAC CGCAC CGCAC CGCAC CGC
106359031 CGTCCCAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.61, G:0.21, T:0.00
Consensus pattern (5 bp):
CGCAC
Found at i:106359410 original size:14 final size:14
Alignment explanation
Indices: 106359383--106359415 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
106359373 TTTTCTTTTC
106359383 TTTTCCTTCTCTCT
1 TTTTCCTTCTCTCT
106359397 TATTTCCTTC-CTCT
1 T-TTTCCTTCTCTCT
106359411 TTTTC
1 TTTTC
106359416 TTTTTTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 6 0.33
15 8 0.44
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTCCTTCTCTCT
Found at i:106359961 original size:258 final size:258
Alignment explanation
Indices: 106359501--106360018 Score: 955
Period size: 258 Copynumber: 2.0 Consensus size: 258
106359491 AATATTTTTG
*
106359501 AATTTTTAATCCTTATTAGATAATAATCAGTAAATTAAATTAAATTTTGTTATTTCTAAAATTTA
1 AATTTTTAATCCTTATTAGATAATAATCAGTAAATTAAATTAAATTCTGTTATTTCTAAAATTTA
*
106359566 ATGCGGCAAACATATTATCAAATGGGAAACAAGAAACTACGAGCTTTTCTTGAGAAATAAAATTT
66 ATGCGACAAACATATTATCAAATGGGAAACAAGAAACTACGAGCTTTTCTTGAGAAATAAAATTT
*
106359631 ATTCTTAAAAATAAATTACCATTATTTTTCAACAGAACAACAATGCTCTCAAAGTTGTGTAAATA
131 ATTCTTAAAAATAAATTACCATTATTTTTCAACAGAACAACAATACTCTCAAAGTTGTGTAAATA
* *
106359696 TATTAGCTCATAATATCTATTTATAGAGAAATAACACAAAAAAATAATGTTTAATTAAATAAT
196 GATTAGCTCATAATATCTATTTATAGAGAAATAACACAAAAAAATAATATTTAATTAAATAAT
*
106359759 AATTTTTAATCCTTATTAGATAATAATCAGTAAATTAAATTAAGTTCTGTTATTTCTAAAATTTA
1 AATTTTTAATCCTTATTAGATAATAATCAGTAAATTAAATTAAATTCTGTTATTTCTAAAATTTA
*
106359824 ATGCGACAAACATATTATCAGATGGGAAACAAGAAACTACGAGCTTTTCTTGAGAAATAAAATTT
66 ATGCGACAAACATATTATCAAATGGGAAACAAGAAACTACGAGCTTTTCTTGAGAAATAAAATTT
*
106359889 ATTCTTAAAAATAAATTACCATTATTTTTCAACAGAACAACAATACTCTCAAAGTTGTGTAGATA
131 ATTCTTAAAAATAAATTACCATTATTTTTCAACAGAACAACAATACTCTCAAAGTTGTGTAAATA
*
106359954 GATTAGCTCATAATATCTATTTATAGAGAAATAACACAAAGAAATAATATTTAATTAAATAAT
196 GATTAGCTCATAATATCTATTTATAGAGAAATAACACAAAAAAATAATATTTAATTAAATAAT
106360017 AA
1 AA
106360019 AATTTCAATA
Statistics
Matches: 251, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
258 251 1.00
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.35
Consensus pattern (258 bp):
AATTTTTAATCCTTATTAGATAATAATCAGTAAATTAAATTAAATTCTGTTATTTCTAAAATTTA
ATGCGACAAACATATTATCAAATGGGAAACAAGAAACTACGAGCTTTTCTTGAGAAATAAAATTT
ATTCTTAAAAATAAATTACCATTATTTTTCAACAGAACAACAATACTCTCAAAGTTGTGTAAATA
GATTAGCTCATAATATCTATTTATAGAGAAATAACACAAAAAAATAATATTTAATTAAATAAT
Found at i:106369754 original size:20 final size:20
Alignment explanation
Indices: 106369724--106369772 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
106369714 TTCTCTCATA
*
106369724 ATTATTATTTTTATATATATT
1 ATTA-TATTTTTACATATATT
106369745 ATTATATTTTTACATATATT
1 ATTATATTTTTACATATATT
106369765 A-TATATTT
1 ATTATATTT
106369773 ATTTATATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 7 0.26
20 16 0.59
21 4 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTATATTTTTACATATATT
Found at i:106369783 original size:27 final size:29
Alignment explanation
Indices: 106369734--106369789 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 29
106369724 ATTATTATTT
*
106369734 TTATATATATTATTATATTTTTACATATA
1 TTATATATATTATTATATATTTACATATA
*
106369763 TTATATAT-TTATT-TATATTTACGTATA
1 TTATATATATTATTATATATTTACATATA
106369790 AATTTTCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 12 0.48
28 5 0.20
29 8 0.32
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.59
Consensus pattern (29 bp):
TTATATATATTATTATATATTTACATATA
Found at i:106369847 original size:14 final size:14
Alignment explanation
Indices: 106369810--106369858 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 14
106369800 ATTATATGCT
106369810 ATATTTATTATAT-
1 ATATTTATTATATA
**
106369823 -TATTTCCTATAT-
1 ATATTTATTATATA
106369835 AT-TTTATTATATA
1 ATATTTATTATATA
106369848 ATATTTATTAT
1 ATATTTATTAT
106369859 GTTTTACTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
12 18 0.62
13 3 0.10
14 8 0.28
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (14 bp):
ATATTTATTATATA
Found at i:106369856 original size:19 final size:19
Alignment explanation
Indices: 106369810--106369858 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
106369800 ATTATATGCT
* *
106369810 ATATTTATTATATTATTTC
1 ATATTTATTATATTATATA
* * *
106369829 CTATATATTTTATTATATA
1 ATATTTATTATATTATATA
106369848 ATATTTATTAT
1 ATATTTATTAT
106369859 GTTTTACTTG
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (19 bp):
ATATTTATTATATTATATA
Found at i:106369985 original size:14 final size:13
Alignment explanation
Indices: 106369966--106370005 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
106369956 TTAAAATTTG
106369966 TAAATCATTATTAT
1 TAAATCA-TATTAT
*
106369980 TAAATCATATTTT
1 TAAATCATATTAT
*
106369993 TAACTCATATTAT
1 TAAATCATATTAT
106370006 ATTCACATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 16 0.70
14 7 0.30
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (13 bp):
TAAATCATATTAT
Found at i:106369995 original size:13 final size:13
Alignment explanation
Indices: 106369961--106370003 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
106369951 TTTATTTAAA
*
106369961 ATTTGTAAATCATT
1 ATTTTTAAATCA-T
*
106369975 ATTATTAAATCAT
1 ATTTTTAAATCAT
*
106369988 ATTTTTAACTCAT
1 ATTTTTAAATCAT
106370001 ATT
1 ATT
106370004 ATATTCACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.37, C:0.09, G:0.02, T:0.51
Consensus pattern (13 bp):
ATTTTTAAATCAT
Found at i:106377520 original size:40 final size:40
Alignment explanation
Indices: 106377447--106377658 Score: 232
Period size: 40 Copynumber: 5.3 Consensus size: 40
106377437 ACCCAAGCAT
* *
106377447 CTTCGGGAT-TTAG-CCGGATATAACGACTTGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
106377486 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAGTAC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
106377526 CTTCGGGTCTTAGCCCGGTTATAACAACTCGCACAAGTGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* * * *
106377566 CTTCGGGTCTTAGCCCGGTTATAATC-ATTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * * * * *
106377606 CTTCGGGACATGGCCCGGATATACCAACTTGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
106377646 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
106377659 TCTGGTTATC
Statistics
Matches: 146, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 132 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:106385474 original size:40 final size:40
Alignment explanation
Indices: 106385401--106385617 Score: 215
Period size: 40 Copynumber: 5.5 Consensus size: 40
106385391 ACCCAAGCAT
* * *
106385401 CTTCGGGAT-TTAG-CCAGATATAACGACTTGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
*
106385440 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAGTGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
106385480 CTTCGGGTCTTAGCCCAGTTATAACAACTCGCACAAGTGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* * * *
106385520 CTTCGGGTCTTAGCCCGGTTATAATC-ATTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * * * * * *
106385560 CTTCGGGACATGGCCCGAATATACCAACTTGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
106385600 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
106385618 TTATCATCCG
Statistics
Matches: 147, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 133 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:106387666 original size:19 final size:19
Alignment explanation
Indices: 106387642--106387679 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
106387632 AGGAGATAGG
106387642 GTTTGCTTCAATCTACTCT
1 GTTTGCTTCAATCTACTCT
*
106387661 GTTTGCTTCGATCTACTCT
1 GTTTGCTTCAATCTACTCT
106387680 ACTACGACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.47
Consensus pattern (19 bp):
GTTTGCTTCAATCTACTCT
Found at i:106387741 original size:51 final size:50
Alignment explanation
Indices: 106387686--106388028 Score: 256
Period size: 45 Copynumber: 7.4 Consensus size: 50
106387676 CTCTACTACG
* * *
106387686 ACTTCAGAGAGATGAGATCTATGATTTATAGCTTCAATCTGTTCCACTGTA
1 ACTTCAGGGAGATAAGATCT-TGATTTATAGCTTCAATCTGTTCCACTGCA
* * * * *
106387737 ACTTCAGGGAAATAAGAT-TT-A-CTAT--CTTTAATCTGCTCCACTGTA
1 ACTTCAGGGAGATAAGATCTTGATTTATAGCTTCAATCTGTTCCACTGCA
* * * *
106387782 ATTTCAGGAAGATAAGA-CTTG-TTT-T-G-----ATCTGCTCTACTGCA
1 ACTTCAGGGAGATAAGATCTTGATTTATAGCTTCAATCTGTTCCACTGCA
* *
106387823 ACTTCAGAGAGATGAGATCTGTGATTTATAGCTTCAATCTGTTCCACTGCA
1 ACTTCAGGGAGATAAGATCT-TGATTTATAGCTTCAATCTGTTCCACTGCA
* * * * * *
106387874 ACCTCAGGGAAATAAGAT-TTG--CTAT--CTTTAGTCTGCTCCACTGCA
1 ACTTCAGGGAGATAAGATCTTGATTTATAGCTTCAATCTGTTCCACTGCA
*
106387919 ACTTCAGGGAGATAAGA-CTTG-TTT-T-G-----ATCTGTTCTACTGCA
1 ACTTCAGGGAGATAAGATCTTGATTTATAGCTTCAATCTGTTCCACTGCA
* *
106387960 ACTTCAGGGAGATGAGATCTGTGATTTATAGTTTCAATCTGTTCCACTGCA
1 ACTTCAGGGAGATAAGATCT-TGATTTATAGCTTCAATCTGTTCCACTGCA
106388011 ACTTCAGGGAGATAAGAT
1 ACTTCAGGGAGATAAGAT
106388029 TTGCTATCTT
Statistics
Matches: 230, Mismatches: 35, Indels: 54
0.72 0.11 0.17
Matches are distributed among these distances:
41 54 0.23
42 4 0.02
43 4 0.02
44 6 0.03
45 73 0.32
46 4 0.02
47 6 0.03
48 1 0.00
49 3 0.01
50 2 0.01
51 73 0.32
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (50 bp):
ACTTCAGGGAGATAAGATCTTGATTTATAGCTTCAATCTGTTCCACTGCA
Found at i:106387771 original size:45 final size:45
Alignment explanation
Indices: 106387708--106388112 Score: 247
Period size: 45 Copynumber: 9.0 Consensus size: 45
106387698 TGAGATCTAT
* * * * *
106387708 GATTTA-TAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAATAA
1 GATTTACTATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * *
106387752 GATTTACTATCTTTAATCTGCTCCACTGTAATTTCAGGAAGATAA
1 GATTTACTATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * * *
106387797 GA-CT--TGT-TTTGATCTGCTCTACTGCAACTTCAGAGAGATGA
1 GATTTACTATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * *
106387838 GATCTGTGATTTATAGCTTCAATCTGTTCCACTGCAACCTCAGGGAAATAA
1 GAT-T-T-A-CTAT--CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* *
106387889 GATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
1 GATTTACTATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * * *
106387934 GA-CT--TGT-TTTGATCTGTTCTACTGCAACTTCAGGGAGATGA
1 GATTTACTATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * *
106387975 GATCTGTGATTTATAGTTTCAATCTGTTCCACTGCAACTTCAGGGAGATAA
1 GAT-T-T-A-CTAT-CTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAA
* * ** *
106388026 GATTTGCTATCTTTAGTCCCCTCCACTGCAACTTTAGGGAGATAA
1 GATTTACTATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * * *
106388071 GACTT-CTGA-CTTTAATCTACTTCGCTGAAACTTCAAGGAGAT
1 GATTTACT-ATCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
106388113 CTGCTATGGC
Statistics
Matches: 278, Mismatches: 61, Indels: 44
0.73 0.16 0.11
Matches are distributed among these distances:
41 60 0.22
42 4 0.01
44 37 0.13
45 97 0.35
46 3 0.01
47 6 0.02
48 4 0.01
49 2 0.01
50 5 0.02
51 60 0.22
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (45 bp):
GATTTACTATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
Found at i:106387841 original size:137 final size:137
Alignment explanation
Indices: 106387670--106388075 Score: 643
Period size: 137 Copynumber: 3.0 Consensus size: 137
106387660 TGTTTGCTTC
* * * *
106387670 GATCTACTCTACTACGACTTCAGAGAGATGAGATCTATGATTTATAGCTTCAATCTGTTCCACTG
1 GATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTGTGATTTATAGCTTCAATCTGTTCCACTG
* * * * *
106387735 TAACTTCAGGGAAATAAGATTTACTATCTTTAATCTGCTCCACTGTAATTTCAGGAAGATAAGAC
66 CAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAATTTCAGGGAGATAAGAC
106387800 TTGTTTT
131 TTGTTTT
106387807 GATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTGTGATTTATAGCTTCAATCTGTTCCACTG
1 GATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTGTGATTTATAGCTTCAATCTGTTCCACTG
* *
106387872 CAACCTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAC
66 CAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAATTTCAGGGAGATAAGAC
106387937 TTGTTTT
131 TTGTTTT
* * *
106387944 GATCTGTTCTACTGCAACTTCAGGGAGATGAGATCTGTGATTTATAGTTTCAATCTGTTCCACTG
1 GATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTGTGATTTATAGCTTCAATCTGTTCCACTG
* **
106388009 CAACTTCAGGGAGATAAGATTTGCTATCTTTAGTCCCCTCCACTGCAACTTT-AGGGAGATAAGA
66 CAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAA-TTTCAGGGAGATAAGA
106388073 CTT
130 CTT
106388076 CTGACTTTAA
Statistics
Matches: 249, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
137 247 0.99
138 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (137 bp):
GATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTGTGATTTATAGCTTCAATCTGTTCCACTG
CAACTTCAGGGAAATAAGATTTGCTATCTTTAGTCTGCTCCACTGCAATTTCAGGGAGATAAGAC
TTGTTTT
Found at i:106387889 original size:92 final size:97
Alignment explanation
Indices: 106387752--106387931 Score: 219
Period size: 92 Copynumber: 1.9 Consensus size: 97
106387742 AGGGAAATAA
* * * **
106387752 GATTTACTATCTTTAATCTGCTCCACTGTAATTTCAGGAAGATAAGACTTG-T-T-TTGA-TCTG
1 GATTTACTAGCTTCAATCTGCTCCACTGCAACCTCAGGAAGATAAGACTTGCTATCTTGAGTCTG
*
106387813 CTCTACTGCAACTTCAGAGAGATGAGATCTGT
66 CTCCACTGCAACTTCAGAGAGATGAGATCTGT
* * *
106387845 GATTTA-TAGCTTCAATCTGTTCCACTGCAACCTCAGGGAA-ATAAGATTTGCTATCTTTAGTCT
1 GATTTACTAGCTTCAATCTGCTCCACTGCAACCTCA-GGAAGATAAGACTTGCTATCTTGAGTCT
*
106387908 GCTCCACTGCAACTTCAGGGAGAT
65 GCTCCACTGCAACTTCAGAGAGAT
106387932 AAGACTTGTT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
92 32 0.44
93 11 0.15
94 1 0.01
95 3 0.04
96 25 0.35
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (97 bp):
GATTTACTAGCTTCAATCTGCTCCACTGCAACCTCAGGAAGATAAGACTTGCTATCTTGAGTCTG
CTCCACTGCAACTTCAGAGAGATGAGATCTGT
Found at i:106387967 original size:86 final size:91
Alignment explanation
Indices: 106387859--106388027 Score: 222
Period size: 92 Copynumber: 1.9 Consensus size: 91
106387849 TATAGCTTCA
*
106387859 ATCTGTTCCACTGCAACCTCAGGGAAATAAGAT-T-TG-CTAT-CTTT-AGTCTGCTCCACTGCA
1 ATCTGTTCCACTGCAACCTCAGGGAAATAAGATCTGTGACTATACTTTCAATCTGCTCCACTGCA
106387919 ACTTCAGGGAGATAAGACTTGTTTTG
66 ACTTCAGGGAGATAAGACTTGTTTTG
* * * * * * *
106387945 ATCTGTTCTACTGCAACTTCAGGGAGATGAGATCTGTGATTTATAGTTTCAATCTGTTCCACTGC
1 ATCTGTTCCACTGCAACCTCAGGGAAATAAGATCTGTGA-CTATACTTTCAATCTGCTCCACTGC
106388010 AACTTCAGGGAGATAAGA
65 AACTTCAGGGAGATAAGA
106388028 TTTGCTATCT
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
86 29 0.42
87 1 0.01
88 2 0.03
90 3 0.04
91 3 0.04
92 31 0.45
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33
Consensus pattern (91 bp):
ATCTGTTCCACTGCAACCTCAGGGAAATAAGATCTGTGACTATACTTTCAATCTGCTCCACTGCA
ACTTCAGGGAGATAAGACTTGTTTTG
Found at i:106388211 original size:68 final size:68
Alignment explanation
Indices: 106388093--106388564 Score: 674
Period size: 68 Copynumber: 6.9 Consensus size: 68
106388083 TAATCTACTT
* * * * * *
106388093 CGCTGAAACTTCAAGGAGATCTGCTATGGCTTCGAGCTGCTCCAATGCCATTTCAGGAAAAAGAG
1 CGCTGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAAAAGAG
*
106388158 ATT
66 ATC
* * * * * *
106388161 CGCTGAAACTTTATGGAGATCTGTTATGGCTTCTAGCCGCTTCAACGCCATTTTAGGGAGAAGAG
1 CGCTGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAAAAGAG
106388226 ATC
66 ATC
* * * *
106388229 CGCTAAAACTTCAAGGAGATCTGTTATGGCTTTTAGCCACTCCAACGCCATTTCAGGGAAAAGAG
1 CGCTGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAAAAGAG
106388294 ATC
66 ATC
* *
106388297 CGCTGAAACTTCAAAGAGATCTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAAAAAAG
1 CGCTGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAAAAGAG
106388362 ATC
66 ATC
* * * * *
106388365 TGTTGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCTGCTCTAACGCCATTTCAAGGAAAAGAG
1 CGCTGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAAAAGAG
106388430 ATC
66 ATC
* * *
106388433 CGCTGAAACTTTAAGGAGATCTGTTGTGGCTTCTAGCCACTCCAATGCCATTTCAGGGAAAAGAG
1 CGCTGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAAAAGAG
106388498 ATC
66 ATC
* * *
106388501 CGCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACACCATTTCAGGGAGAAGA
1 CGCTGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAAAAGA
106388565 TATTTATAAT
Statistics
Matches: 358, Mismatches: 46, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
68 358 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (68 bp):
CGCTGAAACTTCAAGGAGATCTGTTGTGGCTTCTAGCCGCTCCAACGCCATTTCAGGGAAAAGAG
ATC
Found at i:106388730 original size:88 final size:88
Alignment explanation
Indices: 106388579--106388746 Score: 205
Period size: 88 Copynumber: 1.9 Consensus size: 88
106388569 TATAATTTCC
** *
106388579 AGCCTGTTACCCTACTGCTTAAGGGGTTAAGGCTTATCGTATTTGATCTACTCCACTATTGCTTA
1 AGCCTGTTACCCTACTGCTTAAGGGGTTAAGGCTTATCGTATTCAATCTACTCCACTACTGCTTA
*
106388644 GGGAGGTAAGATTTGAATTTTTT
66 GGGAGATAAGATTTGAATTTTTT
* * * ** *
106388667 AGCCTGTTACCCTATTAG-TT-AGGGAGTTAAGGCTTATTGTCTTCAATCTGTTCCCCTACTGCT
1 AGCCTGTTACCCTACT-GCTTAAGGG-GTTAAGGCTTATCGTATTCAATCTACTCCACTACTGCT
*
106388730 TAGGGTGATAAGATTTG
64 TAGGGAGATAAGATTTG
106388747 CGAATTCACC
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 4 0.06
88 62 0.93
89 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (88 bp):
AGCCTGTTACCCTACTGCTTAAGGGGTTAAGGCTTATCGTATTCAATCTACTCCACTACTGCTTA
GGGAGATAAGATTTGAATTTTTT
Found at i:106390894 original size:50 final size:50
Alignment explanation
Indices: 106390840--106390980 Score: 135
Period size: 50 Copynumber: 2.8 Consensus size: 50
106390830 TCGGCCACAT
*
106390840 AGGTATGTACATATGTGATGTTATA-TTGAATCTTGAATATTCGACCATGA
1 AGGTATGTACATAAGTGATGTTATATTTGAATCTTGAATATTCGACCAT-A
* * * * *
106390890 AGGTATGCACAAAAGTGATATTATATTTGAAT-TTGTATATTCGGCCATA
1 AGGTATGTACATAAGTGATGTTATATTTGAATCTTGAATATTCGACCATA
* * * * * *
106390939 TGAGTAAGTACTTAGGTGATGTTAAATTTG-ATCTTGCATATT
1 AG-GTATGTACATAAGTGATGTTATATTTGAATCTTGAATATT
106390981 TGGCCGTATA
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
49 4 0.05
50 63 0.86
51 6 0.08
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (50 bp):
AGGTATGTACATAAGTGATGTTATATTTGAATCTTGAATATTCGACCATA
Found at i:106391301 original size:19 final size:21
Alignment explanation
Indices: 106391267--106391308 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
106391257 AATGTTATAA
*
106391267 TTTGATTTATT-TTTTTAATG
1 TTTGATTTATTATTTTAAATG
106391287 TTTGA-TTATTATTTTAAATG
1 TTTGATTTATTATTTTAAATG
106391307 TT
1 TT
106391309 AAAATTGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.67
Consensus pattern (21 bp):
TTTGATTTATTATTTTAAATG
Found at i:106398576 original size:50 final size:51
Alignment explanation
Indices: 106398383--106398575 Score: 171
Period size: 50 Copynumber: 3.8 Consensus size: 51
106398373 ATATTGTATT
* * *
106398383 TATTCGGCCACATAGGTATGTACATATGTGATGTTATA-TTGAATCTTGAA
1 TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGAATCTTGAA
* * * *
106398433 TATTCGACCATGA-AGGTATGCACAAAAGTGATATTATATTTGAAT-TTGTA
1 TATTCGGCCAT-ATAGGTATGCACATATGTGATATTATATTTGAATCTTGAA
* * * ** * * *
106398483 TATTCGGCCATAT-GAGTAAGTACTTGGGTGATGTTAAATTTG-ATCTTGCA
1 TATTCGGCCATATAG-GTATGCACATATGTGATATTATATTTGAATCTTGAA
* * *
106398533 TATTTGGCCATATAGGTATGCACATTTGTGATATTATCTTTGA
1 TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGA
106398576 TTCTCTATAA
Statistics
Matches: 110, Mismatches: 26, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
49 4 0.04
50 98 0.89
51 8 0.07
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (51 bp):
TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGAATCTTGAA
Found at i:106398598 original size:100 final size:100
Alignment explanation
Indices: 106398410--106398599 Score: 215
Period size: 100 Copynumber: 1.9 Consensus size: 100
106398400 ATGTACATAT
*
106398410 GTGATGTTATATTGAATCTTGAATATTCGACCATGAAGGTATGCACAAAAGTGATATTATATTTG
1 GTGATGTTAAATTGAATCTTGAATATTCGACCATGAAGGTATGCACAAAAGTGATATTATATTTG
* * * *
106398475 AATTTGTATATTCGGCCATATGAGTAAGTACTTGG
66 AATTTCTATAATCGACCAAATGAGTAAGTACTTGG
* * * *** *
106398510 GTGATGTTAAATTTG-ATCTTGCATATTTGGCCAT-ATAGGTATGCACATTTGTGATATTATCTT
1 GTGATGTTAAA-TTGAATCTTGAATATTCGACCATGA-AGGTATGCACAAAAGTGATATTATATT
*
106398573 TG-ATTCTCTATAATCGACTAAATGAGT
64 TGAATT-TCTATAATCGACCAAATGAGT
106398600 GATTTTGGCT
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
99 4 0.05
100 67 0.91
101 3 0.04
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.39
Consensus pattern (100 bp):
GTGATGTTAAATTGAATCTTGAATATTCGACCATGAAGGTATGCACAAAAGTGATATTATATTTG
AATTTCTATAATCGACCAAATGAGTAAGTACTTGG
Found at i:106413579 original size:13 final size:13
Alignment explanation
Indices: 106413563--106413636 Score: 55
Period size: 13 Copynumber: 5.5 Consensus size: 13
106413553 TTCTATTACA
*
106413563 TATTATATTATAT
1 TATTATATTATCT
106413576 TATTTAATATT-TCT
1 TA-TT-ATATTATCT
*
106413590 TATAATATTTATCT
1 TATTATA-TTATCT
106413604 TACTTATA-TATCTT
1 TA-TTATATTATC-T
*
106413618 TATTATA-TATTT
1 TATTATATTATCT
106413630 TATTATA
1 TATTATA
106413637 CAAGTATATT
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
12 11 0.22
13 17 0.33
14 14 0.27
15 9 0.18
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTATATTATCT
Found at i:106413597 original size:27 final size:26
Alignment explanation
Indices: 106413525--106413601 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 26
106413515 ATGCACAATA
106413525 TTATATTTCATTATAATTATTTATGTAT
1 TTATATTTC-TTATAA-TATTTATGTAT
* * * *
106413553 TTCTATTACATATTATATTATAT-TAT
1 TTATATTTCTTATAATATT-TATGTAT
106413579 TTAATATTTCTTATAATATTTAT
1 TT-ATATTTCTTATAATATTTAT
106413602 CTTACTTATA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 12 0.31
27 20 0.51
28 7 0.18
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (26 bp):
TTATATTTCTTATAATATTTATGTAT
Found at i:106413612 original size:27 final size:26
Alignment explanation
Indices: 106413525--106413617 Score: 71
Period size: 27 Copynumber: 3.4 Consensus size: 26
106413515 ATGCACAATA
*
106413525 TTATATTTCATTATAATTATTTATGTAT
1 TTATATTTC-TTATAA-TATTTATTTAT
* * * *
106413553 TTCTATTACATATTATA-TTATATTAT
1 TTATATTTCTTATAATATTTAT-TTAT
*
106413579 TTAATATTTCTTATAATATTTATCTTAC
1 TT-ATATTTCTTATAATATTTAT-TTAT
*
106413607 TTATATATCTT
1 TTATATTTCTT
106413618 TATTATATAT
Statistics
Matches: 50, Mismatches: 12, Indels: 7
0.72 0.17 0.10
Matches are distributed among these distances:
25 4 0.08
26 7 0.14
27 23 0.46
28 16 0.32
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (26 bp):
TTATATTTCTTATAATATTTATTTAT
Found at i:106413625 original size:28 final size:28
Alignment explanation
Indices: 106413563--106413634 Score: 67
Period size: 28 Copynumber: 2.6 Consensus size: 28
106413553 TTCTATTACA
* *
106413563 TATTATA-TTATATTATTTAATATTTCT
1 TATTATATTTATATTACTTAATATCTCT
* *
106413590 TATAATATTTATCTTACTTATATATCT-T
1 TATTATATTTATATTACTTA-ATATCTCT
*
106413618 TATTATATATTTTATTA
1 TATTATAT-TTATATTA
106413635 TACAAGTATA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
27 6 0.17
28 18 0.51
29 11 0.31
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (28 bp):
TATTATATTTATATTACTTAATATCTCT
Found at i:106413724 original size:5 final size:5
Alignment explanation
Indices: 106413709--106413774 Score: 50
Period size: 5 Copynumber: 13.4 Consensus size: 5
106413699 TATATGCAAA
* *
106413709 ATATT -TATT ATA-T -TATT ATTATT ATTTT ATATT ATATT -TCCTT ATATT
1 ATATT ATATT ATATT ATATT A-TATT ATATT ATATT ATATT AT-ATT ATATT
*
106413757 TTATT CATATT ATATT AT
1 ATATT -ATATT ATATT AT
106413775 TATACATAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 14
0.71 0.09 0.21
Matches are distributed among these distances:
3 2 0.04
4 7 0.15
5 29 0.60
6 10 0.21
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (5 bp):
ATATT
Found at i:106413732 original size:14 final size:13
Alignment explanation
Indices: 106413713--106413778 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 13
106413703 TGCAAAATAT
106413713 TTATTATATTATTA
1 TTATTATATTA-TA
*
106413727 TTATTATTTTATA
1 TTATTATATTATA
* *
106413740 TTATATTTCCTTATA
1 TTAT-TAT-ATTATA
106413755 TTTTATTCATATTATA
1 --TTATT-ATATTATA
106413771 TTATTATA
1 TTATTATA
106413779 CATAACTTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
13 9 0.21
14 17 0.40
15 5 0.12
16 6 0.14
17 5 0.12
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTATATTATA
Found at i:106417281 original size:20 final size:20
Alignment explanation
Indices: 106417239--106417281 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
106417229 TAGTGAAATA
* *
106417239 TTATTTTTTATTTTAATTAT
1 TTATTTTTTATATAAATTAT
106417259 TTATATTTTTATATAAATT-T
1 TTAT-TTTTTATATAAATTAT
106417279 TTA
1 TTA
106417282 GGATCAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
TTATTTTTTATATAAATTAT
Found at i:106418242 original size:74 final size:74
Alignment explanation
Indices: 106418066--106418245 Score: 315
Period size: 74 Copynumber: 2.4 Consensus size: 74
106418056 ACATCTATCG
* * * *
106418066 TTTTCATCATAAATAATAAATAAGTGGAATCTGTATTGGCATTGACACCAAAGTCCAAGTCGAGA
1 TTTTCATCATAAATAATAAATAAGTGGAGTCTGTAATGGCATTGACACCAAAGACCAAGTCAAGA
106418131 GAGTCTTTA
66 GAGTCTTTA
106418140 TTTTCATCATAAATAATAAATAAGTGGAGTCTGTAATGGCATTGACACCAAAGACCAAGTCAAGA
1 TTTTCATCATAAATAATAAATAAGTGGAGTCTGTAATGGCATTGACACCAAAGACCAAGTCAAGA
106418205 GAGTCTTTA
66 GAGTCTTTA
*
106418214 TTTTCATCATAAATAATGAATAAGTGGAGTCT
1 TTTTCATCATAAATAATAAATAAGTGGAGTCT
106418246 CCATTGCAAA
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 101 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (74 bp):
TTTTCATCATAAATAATAAATAAGTGGAGTCTGTAATGGCATTGACACCAAAGACCAAGTCAAGA
GAGTCTTTA
Found at i:106425260 original size:3 final size:3
Alignment explanation
Indices: 106425254--106425373 Score: 82
Period size: 3 Copynumber: 39.0 Consensus size: 3
106425244 ATTGTAAAAA
* * * *
106425254 AAT AAT ACT AAT AAT AAT AAT GAT AAT GAT AAT AGT AAT AGA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
* * * * *
106425299 AAT AAT AAT AAT ACATT AAC AAT AAT AAT AGT AA- AGAC AAA AAT AAC
1 AAT AAT AAT AAT A-A-T AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* *
106425346 AAT AGT AAT AAT AAT AGAA AAT AAT AAT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT
106425374 TGTTGTAGGC
Statistics
Matches: 90, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
2 2 0.02
3 80 0.89
4 6 0.07
5 2 0.02
ACGTcount: A:0.62, C:0.04, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:106425622 original size:30 final size:30
Alignment explanation
Indices: 106425581--106425647 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
106425571 AGCCTTTGCT
*
106425581 ACCACCAACTCCACTAGTCACACTTGCTCC
1 ACCACCAACTCCACTAGCCACACTTGCTCC
* *
106425611 ACCACCTACTCCATTAGCCACACTTGCTCC
1 ACCACCAACTCCACTAGCCACACTTGCTCC
106425641 ACCACCA
1 ACCACCA
106425648 CTTGTACCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.27, C:0.48, G:0.06, T:0.19
Consensus pattern (30 bp):
ACCACCAACTCCACTAGCCACACTTGCTCC
Found at i:106426129 original size:22 final size:24
Alignment explanation
Indices: 106426080--106426125 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
106426070 TCTTTTTTGT
106426080 TATTATTATATT-TTTTAATATTA
1 TATTATTATATTCTTTTAATATTA
106426103 TATTATATATATTCTTTTAATAT
1 TATTAT-TATATTCTTTTAATAT
106426126 ATTAGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATTATATTCTTTTAATATTA
Found at i:106426173 original size:25 final size:26
Alignment explanation
Indices: 106426145--106426214 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 26
106426135 ATTCTAAATT
106426145 CTATATTACGTATATATATATT-ATA
1 CTATATTACGTATATATATATTAATA
* * *
106426170 CTATTTTATGTATATATCT-TTAATA
1 CTATATTACGTATATATATATTAATA
*
106426195 CTATATT-C-TTTATATATATT
1 CTATATTACGTATATATATATT
106426215 TTTTTTCTAC
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
23 7 0.19
24 4 0.11
25 25 0.69
ACGTcount: A:0.34, C:0.09, G:0.03, T:0.54
Consensus pattern (26 bp):
CTATATTACGTATATATATATTAATA
Found at i:106426253 original size:22 final size:22
Alignment explanation
Indices: 106426228--106426294 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 22
106426218 TTTCTACATG
*
106426228 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
* *
106426250 TTATATTATGTATGTATTTTTTAC
1 TTATATTATGTA--TATATTTTAA
*
106426274 TCTATATTATGTACATATTTT
1 T-TATATTATGTATATATTTT
106426295 TTTTTATATC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 9 0.24
25 11 0.30
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:106426284 original size:25 final size:24
Alignment explanation
Indices: 106426234--106426296 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
106426224 CATGTTATCT
106426234 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAATTATATTATG
*
106426260 TATGTATTTTTTACTCTATATTATG
1 TATGTATTTTTTAAT-TATATTATG
**
106426285 TACATATTTTTT
1 TATGTATTTTTT
106426297 TTTATATCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 6 0.18
25 20 0.61
26 7 0.21
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (24 bp):
TATGTATTTTTTAATTATATTATG
Found at i:106426387 original size:25 final size:24
Alignment explanation
Indices: 106426359--106426414 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
106426349 GTTATATTTT
*
106426359 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
106426384 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
106426407 CACTATTA
1 CACTATTA
106426415 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:106431285 original size:32 final size:32
Alignment explanation
Indices: 106431244--106431308 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
106431234 AAAGCGATAG
106431244 AATAAAGGTCAAGAAAGTTCAAGAAGGGTAGC
1 AATAAAGGTCAAGAAAGTTCAAGAAGGGTAGC
106431276 AATAAAGGTCAAGAAAGTTCAAGAAGGGTAGC
1 AATAAAGGTCAAGAAAGTTCAAGAAGGGTAGC
106431308 A
1 A
106431309 CCCATGAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.48, C:0.09, G:0.28, T:0.15
Consensus pattern (32 bp):
AATAAAGGTCAAGAAAGTTCAAGAAGGGTAGC
Found at i:106438987 original size:15 final size:15
Alignment explanation
Indices: 106438954--106438987 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
106438944 CACGCTGAGG
* *
106438954 TTTTTCAATTTCTGT
1 TTTTTCAATTTATGC
106438969 TTTTTCAATTTATGC
1 TTTTTCAATTTATGC
106438984 TTTT
1 TTTT
106438988 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTTCAATTTATGC
Found at i:106439059 original size:13 final size:13
Alignment explanation
Indices: 106439041--106439087 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
106439031 CATGCCAAGG
106439041 TATTTTTAATTTC
1 TATTTTTAATTTC
106439054 TATTTTTTAATTTC
1 TA-TTTTTAATTTC
*
106439068 TACTTTTAATTTC
1 TATTTTTAATTTC
*
106439081 TGTTTTT
1 TATTTTT
106439088 CAAAAATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 17 0.57
14 13 0.43
ACGTcount: A:0.19, C:0.09, G:0.02, T:0.70
Consensus pattern (13 bp):
TATTTTTAATTTC
Found at i:106439062 original size:14 final size:14
Alignment explanation
Indices: 106439043--106439087 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
106439033 TGCCAAGGTA
106439043 TTTTTAATTTCTAT
1 TTTTTAATTTCTAT
106439057 TTTTTAATTTCTA-
1 TTTTTAATTTCTAT
* *
106439070 CTTTTAATTTCTGT
1 TTTTTAATTTCTAT
106439084 TTTT
1 TTTT
106439088 CAAAAATCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.18, C:0.09, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTTTAATTTCTAT
Found at i:106439074 original size:87 final size:87
Alignment explanation
Indices: 106438883--106439074 Score: 205
Period size: 87 Copynumber: 2.2 Consensus size: 87
106438873 TATTTTGATG
* *
106438883 TTTTT-ATTTCTA-TCTTTCAAAAAATCAACTCATATTGCGAGAGGAGTTGGGCCTCAGGTCACA
1 TTTTTAATTTCTACT-TTTCAAAAAATCAACTCATATTGCGAGAGGAGCTGAGCCTCAGGTCACA
** *
106438946 CGCTGAGGTTTTTCAATTTCTGT
65 CGCCAAGGTTTTTCAATTTCTAT
* * **
106438969 TTTTTCAATTTATGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTC-GG-GG
1 TTTTT-AATTTCTACTTTTCAAAAAATCAACTCATATTGCGAGA-G-GAGCTGAGCCTCAGGTCA
* *
106439031 CATGCCAAGGTATTTTTAATTTCTAT
63 CACGCCAAGGT-TTTTCAATTTCTAT
106439057 TTTTTAATTTCTACTTTT
1 TTTTTAATTTCTACTTTT
106439075 AATTTCTGTT
Statistics
Matches: 87, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
86 5 0.06
87 42 0.48
88 29 0.33
89 11 0.13
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (87 bp):
TTTTTAATTTCTACTTTTCAAAAAATCAACTCATATTGCGAGAGGAGCTGAGCCTCAGGTCACAC
GCCAAGGTTTTTCAATTTCTAT
Found at i:106439152 original size:100 final size:100
Alignment explanation
Indices: 106438954--106439266 Score: 364
Period size: 100 Copynumber: 3.1 Consensus size: 100
106438944 CACGCTGAGG
* ** * *
106438954 TTTTTCAATTTCTGTTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGC
1 TTTTTTAATTTCTGACTTTT-AATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
* ** *
106439019 TGAGCCTCG-GGGCATGCCAAGGTATTTTTAATTTCT
65 TGAGCCT-GAGGGCACGCTGAGGTATTTTCAATTTCT
* *
106439055 ATTTTTTAATTTCT-ACTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGT
1 -TTTTTTAATTTCTGACTTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
106439119 TGAGCCTGAGGGCACGCTGAGGTATTTTCAATTTCT
65 TGAGCCTGAGGGCACGCTGAGGTATTTTCAATTTCT
* * * ** *
106439155 GTTTTTCAATTTTTGCCTTACAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGT
1 -TTTTTTAATTTCTGACTTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
* * *
106439218 TGAGCCTCAGGACACACTGAGGTATTTTCAATTTTCGT
65 TGAGCCTGAGGGCACGCTGAGGTATTTTCAA-TTTC-T
106439256 TTTTTTAATTT
1 TTTTTTAATTT
106439267 ATGTTTCTAA
Statistics
Matches: 183, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
99 56 0.31
100 95 0.52
101 20 0.11
102 12 0.07
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (100 bp):
TTTTTTAATTTCTGACTTTTAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTGAGGGCACGCTGAGGTATTTTCAATTTCT
Found at i:106439378 original size:73 final size:73
Alignment explanation
Indices: 106439277--106439839 Score: 673
Period size: 73 Copynumber: 7.6 Consensus size: 73
106439267 ATGTTTCTAA
* * * *
106439277 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
106439342 TGTTTGTC
66 TGTTTGTC
* *
106439350 AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT-
* * *
106439415 TGTTTTTTTA
65 T-TGTTTGTC
* * * * * *
106439425 AAAAATCAACTCATATTGTGATAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
106439490 TGTTTGTC
66 TGTTTGTC
* * *
106439498 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-ATCAAGACATGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
*
106439562 TGTCTT-TAAAA
66 TGT-TTGT---C
* * * *
106439573 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
* *
106439638 TATTTTTC
66 TGTTTGTC
* * * * *
106439646 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
106439711 TTTGTTTGTC
64 TTTGTTTGTC
* * *
106439721 AAAAATCAACTCATATTGCAAGAGGTAAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
106439786 TGTCTT-TC
66 TGT-TTGTC
* * *
106439794 AAAAAAAATCAGCTCATATTGCGAGAGGTAAGTTGAACCTCAAGAC
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
106439840 GCTGAGATGT
Statistics
Matches: 419, Mismatches: 57, Indels: 25
0.84 0.11 0.05
Matches are distributed among these distances:
72 29 0.07
73 159 0.38
74 4 0.01
75 157 0.37
76 70 0.17
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTT
TGTTTGTC
Found at i:106439576 original size:148 final size:147
Alignment explanation
Indices: 106439257--106439839 Score: 708
Period size: 148 Copynumber: 3.9 Consensus size: 147
106439247 AATTTTCGTT
* * * *
106439257 TTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTT-TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
* * *
106439322 GCTGAGGTAATTTCAATTTTTGTTTGTC-AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCC
65 GCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
106439386 TCAAGACACGTTGAGGTA
130 TCAAGACACGTTGAGGTA
* * * *
106439404 TTTTCAATTTCTGTTTTTTTAAAAAATCAACTCATATTGTGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTG--TTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* *
106439469 TGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-
64 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
106439532 ATCAAGACATGTTGAGGTA
129 CTCAAGACACGTTGAGGTA
* *
106439551 TTTTCAATTTCTGTCTTTAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
1 TTTTCAATTTCTGT-TTT--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
** * * * *
106439616 ACATTGAGGTATTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGA
63 ACGCTGAGGTAATTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
106439681 GCCTTAGGACACGCTGAGGTA
127 GCCTCAAGACACGTTGAGGTA
* * * * *
106439702 ATTTCAATTTTTGTTTGT-CAAAAATCAACTCATATTGCAAGAGGTAAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTT-TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
* * * *
106439766 GTTGAGGTATTTTCAATTTCTGTCTT-TCAAAAAAAATCAGCTCATATTGCGAGAGGTAAGTTGA
65 GCTGAGGTAATTTCAATTTCTGT-TTGTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
106439830 ACCTCAAGAC
127 GCCTCAAGAC
106439840 GCTGAGATGT
Statistics
Matches: 380, Mismatches: 45, Indels: 20
0.85 0.10 0.04
Matches are distributed among these distances:
145 1 0.00
146 3 0.01
147 41 0.11
148 229 0.60
149 44 0.12
150 35 0.09
151 27 0.07
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (147 bp):
TTTTCAATTTCTGTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
CTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CAAGACACGTTGAGGTA
Found at i:106439663 original size:223 final size:223
Alignment explanation
Indices: 106439277--106439839 Score: 873
Period size: 223 Copynumber: 2.5 Consensus size: 223
106439267 ATGTTTCTAA
* * * * *
106439277 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
* * * * * *
106439342 TGT-TTGT--CAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 TGTCTT-TAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTA
* ** *
106439404 TTTTCAATTTCTGTTTTTTTAAAAAATCAACTCATATTGTGATAGGTGAGTTGAGCCTCAGGACA
130 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
*
106439469 TGCTGAGGTAATTTCAATTTTTGTTTGTC
195 CGCTGAGGTAATTTCAATTTTTGTTTGTC
* *
106439498 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-ATCAAGACATGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
106439562 TGTCTTTAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTA
66 TGTCTTT-AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTA
*
106439627 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTTAGGACA
130 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
106439692 CGCTGAGGTAATTTCAATTTTTGTTTGTC
195 CGCTGAGGTAATTTCAATTTTTGTTTGTC
* *
106439721 AAAAATCAACTCATATTGCAAGAGGTAAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
*
106439786 TGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTAAGTTGAACCTCAAGAC
66 TGTCTTT-AAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGAC
106439840 GCTGAGATGT
Statistics
Matches: 312, Mismatches: 25, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
220 28 0.09
221 35 0.11
223 169 0.54
224 80 0.26
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (223 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
TGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTAT
TTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTTTGTTTGTC
Done.