Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 33 of 352
Found at i:10692334 original size:93 final size:93
Alignment explanation
Indices: 10692166--10692334 Score: 248
Period size: 93 Copynumber: 1.8 Consensus size: 93
10692156 CGACCATAAG
** ** *
10692166 TGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGGCTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGCTCGAACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
**
10692231 ATGAGCTCGGACGCCTAGTTACATCTCA
66 ACAAGCTCGGACGCCTAGTTACATCTCA
* *
10692259 TGAACTCGGACTCAACTCAACGAGTTCGAACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGCTCGAACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
10692324 ACAAGTTCGGA
66 ACAAGCTCGGA
10692335 TGCTCAACCA
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 66 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
TGAACTCAGACTCAACTCAACGAGCTCGAACACTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGACGCCTAGTTACATCTCA
Found at i:10706105 original size:3 final size:3
Alignment explanation
Indices: 10706097--10706121 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10706087 CAAAGCGATA
10706097 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
10706122 GTAAAAGGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:10711952 original size:20 final size:20
Alignment explanation
Indices: 10711919--10712007 Score: 90
Period size: 20 Copynumber: 4.4 Consensus size: 20
10711909 CGTGTTTGCT
* * *
10711919 TTTCATTTAGCTCACATGAG
1 TTTCAGTTAACTCATATGAG
* *
10711939 CTTCAGTTAACTCATATTAG
1 TTTCAGTTAACTCATATGAG
*
10711959 TTTCAGTTAAC-CCTAATGAG
1 TTTCAGTTAACTCAT-ATGAG
*
10711979 TTTCAGTTCAACTCTTATGAG
1 TTTCAGTT-AACTCATATGAG
10712000 TTTCAGTT
1 TTTCAGTT
10712008 TAACCCTACT
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
19 2 0.04
20 37 0.65
21 16 0.28
22 2 0.04
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (20 bp):
TTTCAGTTAACTCATATGAG
Found at i:10712000 original size:21 final size:20
Alignment explanation
Indices: 10711934--10712007 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
10711924 TTTAGCTCAC
* *
10711934 ATGAGCTTCAGTTAACTCAT
1 ATGAGTTTCAGTTAACTCTT
* * *
10711954 ATTAGTTTCAGTTAACCCTA
1 ATGAGTTTCAGTTAACTCTT
10711974 ATGAGTTTCAGTTCAACTCTT
1 ATGAGTTTCAGTT-AACTCTT
10711995 ATGAGTTTCAGTT
1 ATGAGTTTCAGTT
10712008 TAACCCTACT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
20 27 0.60
21 18 0.40
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.41
Consensus pattern (20 bp):
ATGAGTTTCAGTTAACTCTT
Found at i:10712036 original size:42 final size:41
Alignment explanation
Indices: 10711934--10712041 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 41
10711924 TTTAGCTCAC
* * *
10711934 ATGAGCTTCAGTT-AACTCATATTAGTTTCAGTTAACCCTA
1 ATGAGTTTCAGTTCAACTCTTATGAGTTTCAGTTAACCCTA
10711974 ATGAGTTTCAGTTCAACTCTTATGAGTTTCAGTTTAACCCTA
1 ATGAGTTTCAGTTCAACTCTTATGAGTTTCAG-TTAACCCTA
* * * *
10712016 CTGGGTTTTC-GTTTAGCTCTTATGAG
1 ATGAG-TTTCAGTTCAACTCTTATGAG
10712042 CTTATGTTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
40 12 0.21
41 16 0.28
42 26 0.45
43 4 0.07
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.41
Consensus pattern (41 bp):
ATGAGTTTCAGTTCAACTCTTATGAGTTTCAGTTAACCCTA
Found at i:10715044 original size:46 final size:46
Alignment explanation
Indices: 10714973--10715200 Score: 294
Period size: 46 Copynumber: 5.0 Consensus size: 46
10714963 GCTTTCTGAA
* * *
10714973 ATGAAATGTGTAATACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
10715019 ATGAAATGTGTAAGACCATGATTGAAAGATATCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
10715065 ATGAAATGAACAAGACCATGGTTGAAAAATACCATAGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
10715111 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
10715157 AGGAAATGAGTAAGACCATGGTTGAAAAATACTATGGCATCATG
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
10715201 TCAAAGATAA
Statistics
Matches: 159, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 159 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:10717435 original size:42 final size:42
Alignment explanation
Indices: 10717372--10717535 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 42
10717362 TTTCATTTTC
** *
10717372 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACAT-A
* *
10717415 T-GATGCCATAGACCAGCTATGGTCTTACACATATTCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
* * * *
10717456 TCAATACCATAGCCCAGCTGTGGTTTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT--C-T-TCACATA
10717505 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
10717536 GAATCACATA
Statistics
Matches: 99, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
41 2 0.02
42 59 0.60
43 1 0.01
45 2 0.02
48 1 0.01
49 34 0.34
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
Found at i:10717667 original size:53 final size:51
Alignment explanation
Indices: 10717538--10717699 Score: 170
Period size: 53 Copynumber: 3.1 Consensus size: 51
10717528 TCTTACACGA
* * * *
10717538 ATCACATATCTCACTGATGCCATATCCCAGATATGGTCTTATGCAGTAGCATAT
1 ATCACAT-TCTC-C-GATGCCATATCCCAGATATGGTCTTATACGGAAGCACAT
*
10717592 ATCACA----CCGATGCTATATCCCAGATATGGTCTTATACGGAAGCACAT
1 ATCACATTCTCCGATGCCATATCCCAGATATGGTCTTATACGGAAGCACAT
* * *
10717639 AATCACATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACAT
1 -ATCACAT-TCTCCGATGCCATATCCCAGATATGGTCTTATACGG-AAGCACAT
10717693 ATCACAT
1 ATCACAT
10717700 GTTGCCATGG
Statistics
Matches: 92, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
47 34 0.37
48 7 0.08
49 1 0.01
53 37 0.40
54 13 0.14
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (51 bp):
ATCACATTCTCCGATGCCATATCCCAGATATGGTCTTATACGGAAGCACAT
Found at i:10720251 original size:13 final size:13
Alignment explanation
Indices: 10720233--10720257 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10720223 CTGTTTTGGC
10720233 AACAGATACAGGA
1 AACAGATACAGGA
10720246 AACAGATACAGG
1 AACAGATACAGG
10720258 TTAGGGGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.24, T:0.08
Consensus pattern (13 bp):
AACAGATACAGGA
Found at i:10728412 original size:86 final size:86
Alignment explanation
Indices: 10728267--10728436 Score: 331
Period size: 86 Copynumber: 2.0 Consensus size: 86
10728257 ATTCCGCCAA
10728267 AGTTGATAATTTGTGCCATTCAACATAATCATCTTGCTCGTATTAATTTCCATAATTATCTGACA
1 AGTTGATAATTTGTGCCATTCAACATAATCATCTTGCTCGTATTAATTTCCATAATTATCTGACA
10728332 CAATAACCAAGCTCTGGTACC
66 CAATAACCAAGCTCTGGTACC
*
10728353 AGTTGATAATTTGTGCCATTCAACATAATTATCTTGCTCGTATTAATTTCCATAATTATCTGACA
1 AGTTGATAATTTGTGCCATTCAACATAATCATCTTGCTCGTATTAATTTCCATAATTATCTGACA
10728418 CAATAACCAAGCTCTGGTA
66 CAATAACCAAGCTCTGGTA
10728437 GAGTAGCAAG
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.36
Consensus pattern (86 bp):
AGTTGATAATTTGTGCCATTCAACATAATCATCTTGCTCGTATTAATTTCCATAATTATCTGACA
CAATAACCAAGCTCTGGTACC
Found at i:10729013 original size:565 final size:560
Alignment explanation
Indices: 10727873--10728928 Score: 1837
Period size: 565 Copynumber: 1.9 Consensus size: 560
10727863 AGTCTGGTAG
10727873 AGTAGCAAGCAACCAAAGTCCTAAAATCTCGTCATCAAATTTGACACCCATACCAAGCAACTGAT
1 AGTAGCAAGCAACCAAAGTCCTAAAATCTCGTCATCAAATTTGACACCCATACCAAGCAACTGAT
*
10727938 TCATCACACTCTTAAATTCACTAACATGGTCAGCTATAGACATTCCTTCTTTATATTTCAGCGCA
66 TCATCACACTCTGAAATTCACTAACATGGTCAGCTATAGACATTCCTTCTTTATATTTCAGCGCA
10728003 ATCATTTTCTTCAGCAAAAACAACTTGTTATTGCCCGACCTCGAAGCATACAAGCTTTCAAGCTT
131 ATCATTTTCTTCAGCAAAAACAACTTGTTATTGCCCGACCTCGAAGCATACAAGCTTTCAAGCTT
10728068 CTCCCACAATGTTCGAGCATGTGTCTCCTGATCAATGTGGTTGTAAACATTTTCTTCAACAAATT
196 CTCCCACAATGTTCGAGCATGTGTCTCCTGATCAATGTGGTTGTAAACATTTTCTTCAACAAATT
10728133 GCCGAATAAAGCCACACACTTGTTGATGCTCAAATTCCCATTCTTCATCACTTTTCGAATCGGGT
261 GCCGAATAAAGCCACACACTTGTTGATGCTCAAATTCCCATTCTTCATCACTTTTCGAATCGGGT
10728198 TTTTGAGTAGTAAAGACCGGAAGATGCAAAGCCTTCACAAACAACAAATCCTTCATTTTATTCCG
326 TTTTGAGTAGTAAAGACCGGAAGATGCAAAGCCTTCACAAACAACAAATCCTTCATTTTATTCCG
10728263 CCAAAGTTGATAATTTGTGCCATTCAACATAATCATCTTGCTCGTATTAATTTCCATAATTATCT
391 CCAAAGTTGATAATTTGTGCCATTCAACATAATCATCTTGCTCGTATTAATTTCCATAATTATCT
* * * ** ** * **
10728328 GACACAATAACCAAGCTCTGGTACCAGTTGATAATTTGTGCCATTCAACATAATTATCTTGCTCG
456 GACACAATAACCAAGCTCTGGTACCAGTT-AT-AGTTGGGCAAAACAACATAAGAAACAAGC-CG
* ** *** * *** *
10728393 TATTAATTTCCATAATTATCTGACACAATAACCAAGCTCTGGTAG
518 AAAGAACAACCATAATTATCTCACACAATAACC-A-CTCTCAAAA
*
10728438 AGTAGCAAGCAACCAAAGTCCTAAAATCTCGTCATCAAATTTGACACCCATACCAAGTAACTGAT
1 AGTAGCAAGCAACCAAAGTCCTAAAATCTCGTCATCAAATTTGACACCCATACCAAGCAACTGAT
10728503 TCATCACACTCTGAAATTCACTAACATGGTCAGCTATAGACATTCCTTCTTTATATTTCAGCGCA
66 TCATCACACTCTGAAATTCACTAACATGGTCAGCTATAGACATTCCTTCTTTATATTTCAGCGCA
10728568 ATCATTTTCTTCAGCAAAAACAACTTGTTATTGCCCGACCTCGAAGCATACAAGCTTTCAAGCTT
131 ATCATTTTCTTCAGCAAAAACAACTTGTTATTGCCCGACCTCGAAGCATACAAGCTTTCAAGCTT
10728633 CTCCCACAATGTTCGAGCATGTGTCTCCTGATCAATGTGGTTGTAAACATTTTCTTCAACAAATT
196 CTCCCACAATGTTCGAGCATGTGTCTCCTGATCAATGTGGTTGTAAACATTTTCTTCAACAAATT
10728698 GCCGAATAAAGCCACACACTTGTTGATGCTCAAATTCCCATTCTTCATCACTTTTCGAATCGGGT
261 GCCGAATAAAGCCACACACTTGTTGATGCTCAAATTCCCATTCTTCATCACTTTTCGAATCGGGT
*
10728763 TTTTGAGTAGTAAAGACCGGAAGATGCAAAGCCTTCACAAACAACAAATCTTTCATTTTATTCCG
326 TTTTGAGTAGTAAAGACCGGAAGATGCAAAGCCTTCACAAACAACAAATCCTTCATTTTATTCCG
10728828 CCAAAGTTGATAATTTGTGCCATTCAACATAATCATCTTGCTCGTATTAATTTCCATAATTATCT
391 CCAAAGTTGATAATTTGTGCCATTCAACATAATCATCTTGCTCGTATTAATTTCCATAATTATCT
10728893 GACACAATAACCAAGCTCTGGTACCAGTT-T-GTTGGG
456 GACACAATAACCAAGCTCTGGTACCAGTTATAGTTGGG
10728929 AAGAAAACGA
Statistics
Matches: 486, Mismatches: 5, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
561 4 0.01
563 1 0.00
565 481 0.99
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (560 bp):
AGTAGCAAGCAACCAAAGTCCTAAAATCTCGTCATCAAATTTGACACCCATACCAAGCAACTGAT
TCATCACACTCTGAAATTCACTAACATGGTCAGCTATAGACATTCCTTCTTTATATTTCAGCGCA
ATCATTTTCTTCAGCAAAAACAACTTGTTATTGCCCGACCTCGAAGCATACAAGCTTTCAAGCTT
CTCCCACAATGTTCGAGCATGTGTCTCCTGATCAATGTGGTTGTAAACATTTTCTTCAACAAATT
GCCGAATAAAGCCACACACTTGTTGATGCTCAAATTCCCATTCTTCATCACTTTTCGAATCGGGT
TTTTGAGTAGTAAAGACCGGAAGATGCAAAGCCTTCACAAACAACAAATCCTTCATTTTATTCCG
CCAAAGTTGATAATTTGTGCCATTCAACATAATCATCTTGCTCGTATTAATTTCCATAATTATCT
GACACAATAACCAAGCTCTGGTACCAGTTATAGTTGGGCAAAACAACATAAGAAACAAGCCGAAA
GAACAACCATAATTATCTCACACAATAACCACTCTCAAAA
Found at i:10731705 original size:19 final size:18
Alignment explanation
Indices: 10731681--10731717 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
10731671 TATTATTTAT
10731681 CATTTTTATACTTTTTAAA
1 CATTTTTA-ACTTTTTAAA
*
10731700 CATTTTTAAGTTTTTAAA
1 CATTTTTAACTTTTTAAA
10731718 ATAATTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.57
Consensus pattern (18 bp):
CATTTTTAACTTTTTAAA
Found at i:10745503 original size:128 final size:125
Alignment explanation
Indices: 10745329--10745639 Score: 383
Period size: 128 Copynumber: 2.5 Consensus size: 125
10745319 ACAAAACATT
* * * * ** * *
10745329 GCCTCATTTTAATTTGAGAAAACATGGATGAAA-CTTCAAAAGGATATTTTGTATTTTAATCGGA
1 GCCTCATTTTAATTTTAAAAAACATGGACGAAATTTTC-AAAGGATATTCCGTATTTTAACCGAA
* **
10745393 TGGAAAATTGAAGCCCAGCACGATTGGGCACGACTCCCCAAA-CTCCCCAAGTACGAAATATA
65 TGGAAAATTGAAGCCCAGCACGATTGGGCACAAC-CCCCAAACCT-CCCAAACACGAAATATA
* *
10745455 GTCTCATTTTAATTTTTAACAAAACATGGACGAAATTTTCAAAGGATATTCCGTATTTTAGCCGA
1 GCCTCATTTTAA-TTTTAA-AAAACATGGACGAAATTTTCAAAGGATATTCCGTATTTTAACCGA
* * * *
10745520 ATGGAAAATTGAAGCCCAGCACGATTGGGCACAACCTCCTAACCTTCCAAACACGAAATATT
64 ATGGAAAATTGAAGCCCAGCACGATTGGGCACAACCCCCAAACCTCCCAAACACGAAATATA
* * *
10745582 GCCTCGTTTTAATTTTAAAAAAAATGGACAAAATTTTCAAAGGATATTCCGTATTTTA
1 GCCTCATTTTAATTTTAAAAAACATGGACGAAATTTTCAAAGGATATTCCGTATTTTA
10745640 GCTGAACAAA
Statistics
Matches: 160, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
125 38 0.24
126 17 0.11
127 32 0.20
128 70 0.44
129 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (125 bp):
GCCTCATTTTAATTTTAAAAAACATGGACGAAATTTTCAAAGGATATTCCGTATTTTAACCGAAT
GGAAAATTGAAGCCCAGCACGATTGGGCACAACCCCCAAACCTCCCAAACACGAAATATA
Found at i:10745653 original size:125 final size:128
Alignment explanation
Indices: 10745396--10745678 Score: 358
Period size: 125 Copynumber: 2.2 Consensus size: 128
10745386 AATCGGATGG
* ** *
10745396 AAAATTGAAGCCCAGCACGATTGGGCACGACTCCCCAAACTCCCCAAGTACGAAATATAGTCTCA
1 AAAATTGAAGCCCAGCACGATTGGGCACAACTCCCCAAACTCCCCAAACACGAAATATAGCCTCA
* * ***
10745461 TTTTAATTTTTAACAAAACATGGACGAAATTTTCAAAGGATATTCCGTATTTTAGCCGAATGG
66 TTTTAATTTTTAACAAAAAATGGACAAAATTTTCAAAGGATATTCCGTATTTTAGCCGAACAA
* * * *
10745524 AAAATTGAAGCCCAGCACGATTGGGCACAAC-CTCCTAAC-CTTCCAAACACGAAATATTGCCTC
1 AAAATTGAAGCCCAGCACGATTGGGCACAACTCCCCAAACTC-CCCAAACACGAAATATAGCCTC
* *
10745587 GTTTTAA-TTTTAA-AAAAAATGGACAAAATTTTCAAAGGATATTCCGTATTTTAGCTGAACAA
65 ATTTTAATTTTTAACAAAAAATGGACAAAATTTTCAAAGGATATTCCGTATTTTAGCCGAACAA
* * * *
10745649 AAAATCGAAACCTAACACGATTGGGCACAA
1 AAAATTGAAGCCCAGCACGATTGGGCACAA
10745679 TTTGTCGAAC
Statistics
Matches: 135, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
125 69 0.51
126 7 0.05
127 29 0.21
128 30 0.22
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (128 bp):
AAAATTGAAGCCCAGCACGATTGGGCACAACTCCCCAAACTCCCCAAACACGAAATATAGCCTCA
TTTTAATTTTTAACAAAAAATGGACAAAATTTTCAAAGGATATTCCGTATTTTAGCCGAACAA
Found at i:10748410 original size:16 final size:18
Alignment explanation
Indices: 10748379--10748412 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10748369 AATTTTAAAA
10748379 TTATATATCAACTTTGAT
1 TTATATATCAACTTTGAT
10748397 TTATATAT-AA-TTTGAT
1 TTATATATCAACTTTGAT
10748413 ATATGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 2 0.12
18 8 0.50
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (18 bp):
TTATATATCAACTTTGAT
Found at i:10753698 original size:27 final size:29
Alignment explanation
Indices: 10753668--10753721 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
10753658 TGTGAAAATT
10753668 AAATT-AAATTAATAT-TAAAATTGCACA
1 AAATTAAAATTAATATATAAAATTGCACA
* *
10753695 AAATTAAAATTTATATATAATATTGCA
1 AAATTAAAATTAATATATAAAATTGCA
10753722 TATCGAACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 5 0.22
28 9 0.39
29 9 0.39
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (29 bp):
AAATTAAAATTAATATATAAAATTGCACA
Found at i:10755850 original size:24 final size:24
Alignment explanation
Indices: 10755817--10755870 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
10755807 TCCTTTTCCA
* * *
10755817 GCACCCGAGCCTTCCAGTCCCTTT
1 GCACCTGAGCCTTCCAGTCCATCT
10755841 GCACCTGAGCCTTCCAGTCCATCT
1 GCACCTGAGCCTTCCAGTCCATCT
10755865 GCACCT
1 GCACCT
10755871 CACCCCACTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.15, C:0.44, G:0.17, T:0.24
Consensus pattern (24 bp):
GCACCTGAGCCTTCCAGTCCATCT
Found at i:10758289 original size:16 final size:16
Alignment explanation
Indices: 10758268--10758299 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10758258 CATGCAGTAA
10758268 ATAAACTGTCATCACT
1 ATAAACTGTCATCACT
10758284 ATAAACTGTCATCACT
1 ATAAACTGTCATCACT
10758300 TTCTTTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (16 bp):
ATAAACTGTCATCACT
Found at i:10767070 original size:16 final size:18
Alignment explanation
Indices: 10767048--10767087 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
10767038 CATACAATAC
*
10767048 TATCAAATTCAATT-CAA
1 TATCAAAATCAATTACAA
10767065 -ATCAAAATCAATTACAA
1 TATCAAAATCAATTACAA
10767082 TATCAA
1 TATCAA
10767088 GCATATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 12 0.60
17 3 0.15
18 5 0.25
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (18 bp):
TATCAAAATCAATTACAA
Found at i:10770795 original size:25 final size:25
Alignment explanation
Indices: 10770766--10770841 Score: 116
Period size: 25 Copynumber: 3.0 Consensus size: 25
10770756 TGCTATACAA
* * *
10770766 AGAGCACAAATATGCTAATAATCGG
1 AGAGCACTAACATGCTAATAATCAG
*
10770791 AGAGCACTAACATGCTAAAAATCAG
1 AGAGCACTAACATGCTAATAATCAG
10770816 AGAGCACTAACATGCTAATAATCAG
1 AGAGCACTAACATGCTAATAATCAG
10770841 A
1 A
10770842 TAACGCGCTA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.46, C:0.18, G:0.17, T:0.18
Consensus pattern (25 bp):
AGAGCACTAACATGCTAATAATCAG
Found at i:10771437 original size:40 final size:40
Alignment explanation
Indices: 10771382--10771463 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
10771372 GCTTTATTAC
10771382 CAGTATTTTCTTATAAACTTTTATAATTTTCCAATTTAAT
1 CAGTATTTTCTTATAAACTTTTATAATTTTCCAATTTAAT
10771422 CAGTATTTTCTTATAAACTTTTATAATTTTCCAATTTAAT
1 CAGTATTTTCTTATAAACTTTTATAATTTTCCAATTTAAT
10771462 CA
1 CA
10771464 CATTTTTTCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.02, T:0.51
Consensus pattern (40 bp):
CAGTATTTTCTTATAAACTTTTATAATTTTCCAATTTAAT
Found at i:10776280 original size:21 final size:21
Alignment explanation
Indices: 10776240--10776359 Score: 127
Period size: 21 Copynumber: 5.8 Consensus size: 21
10776230 GTACATCGTT
*
10776240 AACAGAAGCTCGT-A-AGCTG
1 AACAGAAGCTCATAAGAGCTG
10776259 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
* * * **
10776280 AACAAAAACTCTTAAGATTTG
1 AACAGAAGCTCATAAGAGCTG
*
10776301 AACAGAAGCTCATAAAAGCTG
1 AACAGAAGCTCATAAGAGCTG
* * *
10776322 AACAGAAACTCATAATAGTTG
1 AACAGAAGCTCATAAGAGCTG
*
10776343 AACAGAAGCTCGTAAGA
1 AACAGAAGCTCATAAGA
10776360 CCTAAATAAA
Statistics
Matches: 81, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
19 12 0.15
20 1 0.01
21 68 0.84
ACGTcount: A:0.45, C:0.17, G:0.19, T:0.18
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:10776321 original size:42 final size:42
Alignment explanation
Indices: 10776257--10776379 Score: 156
Period size: 42 Copynumber: 2.9 Consensus size: 42
10776247 GCTCGTAAGC
* * *
10776257 TGAACAGAAGCTCATAAGAGCTGAACAAAAACTCTTAAGATT
1 TGAACAGAAGCTCATAAAAGCTGAACAAAAACTCATAAGAGT
* *
10776299 TGAACAGAAGCTCATAAAAGCTGAACAGAAACTCATAATAGT
1 TGAACAGAAGCTCATAAAAGCTGAACAAAAACTCATAAGAGT
* * * * *
10776341 TGAACAGAAGCTCGTAAGACCTAAATAAAAACTCATAAG
1 TGAACAGAAGCTCATAAAAGCTGAACAAAAACTCATAAG
10776380 TAGGGGTGTG
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.47, C:0.17, G:0.16, T:0.20
Consensus pattern (42 bp):
TGAACAGAAGCTCATAAAAGCTGAACAAAAACTCATAAGAGT
Found at i:10776359 original size:63 final size:61
Alignment explanation
Indices: 10776240--10776359 Score: 159
Period size: 63 Copynumber: 1.9 Consensus size: 61
10776230 GTACATCGTT
* * *
10776240 AACAGAAGCTCGTAAGCTGAACAGAAGCTCATAAGAGCTGAACAAAAACTCTTAAGATTTG
1 AACAGAAGCTCATAAGCTGAACAGAAACTCATAAGAGCTGAACAAAAACTCGTAAGATTTG
* * * *
10776301 AACAGAAGCTCATAAAAGCTGAACAGAAACTCATAATAGTTGAACAGAAGCTCGTAAGA
1 AACAGAAGCTCAT--AAGCTGAACAGAAACTCATAAGAGCTGAACAAAAACTCGTAAGA
10776360 CCTAAATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
61 12 0.24
63 38 0.76
ACGTcount: A:0.45, C:0.17, G:0.19, T:0.18
Consensus pattern (61 bp):
AACAGAAGCTCATAAGCTGAACAGAAACTCATAAGAGCTGAACAAAAACTCGTAAGATTTG
Found at i:10776376 original size:63 final size:63
Alignment explanation
Indices: 10776253--10776378 Score: 144
Period size: 63 Copynumber: 2.0 Consensus size: 63
10776243 AGAAGCTCGT
* * ** * * *
10776253 AAGCTGAACAGAAGCTCATAAGAGCTGAACAAAAACTCTTAAGATTTGAACAGAAGCTCATAA
1 AAGCTGAACAGAAACTCATAAGAGCTGAACAAAAACTCGTAAGACCTAAACAAAAACTCATAA
* * * * *
10776316 AAGCTGAACAGAAACTCATAATAGTTGAACAGAAGCTCGTAAGACCTAAATAAAAACTCATAA
1 AAGCTGAACAGAAACTCATAAGAGCTGAACAAAAACTCGTAAGACCTAAACAAAAACTCATAA
10776379 GTAGGGGTGT
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
63 51 1.00
ACGTcount: A:0.48, C:0.17, G:0.16, T:0.19
Consensus pattern (63 bp):
AAGCTGAACAGAAACTCATAAGAGCTGAACAAAAACTCGTAAGACCTAAACAAAAACTCATAA
Found at i:10776687 original size:5 final size:6
Alignment explanation
Indices: 10776674--10776720 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
10776664 ATAATTTAAT
* *
10776674 AAATAA AAATAA AAATTTTA AACTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
10776721 AATATAATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
6 31 0.89
8 4 0.11
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (6 bp):
AAATAA
Found at i:10776762 original size:18 final size:18
Alignment explanation
Indices: 10776739--10776788 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
10776729 TTTATACAAA
*
10776739 TAATTCGGTTAATTCGGG
1 TAATTCGGTTAATTCAGG
**
10776757 TAATTCGGAAAATTCAGG
1 TAATTCGGTTAATTCAGG
*
10776775 TAATTCGTTTAATT
1 TAATTCGGTTAATT
10776789 TTATACTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (18 bp):
TAATTCGGTTAATTCAGG
Found at i:10776999 original size:21 final size:21
Alignment explanation
Indices: 10776975--10777074 Score: 85
Period size: 21 Copynumber: 4.8 Consensus size: 21
10776965 AAAAGCTTGC
10776975 AAGAGCTAAACAGAAACTCAT
1 AAGAGCTAAACAGAAACTCAT
* * * *
10776996 AAGAGTTGAATAGAAGCTCAAT
1 AAGAGCTAAACAGAAACTC-AT
* *
10777018 AA-AGCTGAACGGAAACTCAT
1 AAGAGCTAAACAGAAACTCAT
* * * *
10777038 ATGAGTTAAACAGAAGCTCGT
1 AAGAGCTAAACAGAAACTCAT
*
10777059 AAGAGCTAAATAGAAA
1 AAGAGCTAAACAGAAA
10777075 GTAAAACATG
Statistics
Matches: 59, Mismatches: 18, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
20 3 0.05
21 52 0.88
22 4 0.07
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.18
Consensus pattern (21 bp):
AAGAGCTAAACAGAAACTCAT
Found at i:10777007 original size:42 final size:42
Alignment explanation
Indices: 10776948--10777074 Score: 132
Period size: 42 Copynumber: 3.0 Consensus size: 42
10776938 GAACACCCCT
*
10776948 ACTCATAAGAGTTGAATAAAAGCTTGCAAGAGCTAAACAGAA
1 ACTCATAAGAGTTGAATAGAAGCTTGCAAGAGCTAAACAGAA
* * *
10776990 ACTCATAAGAGTTGAATAGAAGC-T-CAATAAAGCTGAACGGAA
1 ACTCATAAGAGTTGAATAGAAGCTTGC-A-AGAGCTAAACAGAA
* * * * * *
10777032 ACTCATATGAGTTAAACAGAAGCTCGTAAGAGCTAAATAGAA
1 ACTCATAAGAGTTGAATAGAAGCTTGCAAGAGCTAAACAGAA
10777074 A
1 A
10777075 GTAAAACATG
Statistics
Matches: 68, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
40 1 0.01
41 2 0.03
42 64 0.94
43 1 0.01
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (42 bp):
ACTCATAAGAGTTGAATAGAAGCTTGCAAGAGCTAAACAGAA
Found at i:10778890 original size:21 final size:21
Alignment explanation
Indices: 10778861--10778900 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
10778851 TCATATGTAA
10778861 CATCATATGGCAATACCTCAG
1 CATCATATGGCAATACCTCAG
* *
10778882 CATCGTATGGCAATTCCTC
1 CATCATATGGCAATACCTC
10778901 CATACTCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (21 bp):
CATCATATGGCAATACCTCAG
Found at i:10783461 original size:20 final size:20
Alignment explanation
Indices: 10783416--10783454 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10783406 GGGGCACACG
10783416 CCCGTGTCGCCTGGGACATA
1 CCCGTGTCGCCTGGGACATA
* *
10783436 CCCGTGTGGCTTGGGACAT
1 CCCGTGTCGCCTGGGACAT
10783455 GGCCGTGGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.31, G:0.33, T:0.23
Consensus pattern (20 bp):
CCCGTGTCGCCTGGGACATA
Found at i:10785043 original size:25 final size:25
Alignment explanation
Indices: 10785014--10785062 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
10785004 GACATGGTCT
10785014 TATACGGAATCACATTATCACATTA
1 TATACGGAATCACATTATCACATTA
*
10785039 TATACGGAGTCACATTATCACATT
1 TATACGGAATCACATTATCACATT
10785063 GCACCGATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (25 bp):
TATACGGAATCACATTATCACATTA
Found at i:10786605 original size:13 final size:13
Alignment explanation
Indices: 10786587--10786623 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
10786577 AGATAATTAG
10786587 CAAATCATACATA
1 CAAATCATACATA
10786600 CAAATCATACATA
1 CAAATCATACATA
*
10786613 TAAATTCATAC
1 CAAA-TCATAC
10786624 CAAACTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (13 bp):
CAAATCATACATA
Found at i:10787980 original size:16 final size:16
Alignment explanation
Indices: 10787959--10787989 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10787949 TTTCTTTTGT
*
10787959 TTCTTTATTTTATTTA
1 TTCTTTATTTCATTTA
10787975 TTCTTTATTTCATTT
1 TTCTTTATTTCATTT
10787990 TATTTACTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (16 bp):
TTCTTTATTTCATTTA
Found at i:10788292 original size:44 final size:44
Alignment explanation
Indices: 10788243--10788330 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
10788233 TATCTTACAC
10788243 ATGTCACTAATTTGGTTTAAATACTAATTTAGTCCCTTGTCATT
1 ATGTCACTAATTTGGTTTAAATACTAATTTAGTCCCTTGTCATT
10788287 ATGTCACTAATTTGGTTTAAATACTAATTTAGTCCCTTGTCATT
1 ATGTCACTAATTTGGTTTAAATACTAATTTAGTCCCTTGTCATT
10788331 TTTTTCTATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.45
Consensus pattern (44 bp):
ATGTCACTAATTTGGTTTAAATACTAATTTAGTCCCTTGTCATT
Found at i:10790877 original size:30 final size:30
Alignment explanation
Indices: 10790841--10790932 Score: 107
Period size: 30 Copynumber: 3.1 Consensus size: 30
10790831 ATAATCTACA
* *
10790841 AAAATTAGATCAAATCAAAATTTCATGTAT
1 AAAATTACATCAAATCAAAATTTCATATAT
*
10790871 AAAATTACATAAAATCAAAATTT-ATATAT
1 AAAATTACATCAAATCAAAATTTCATATAT
* *
10790900 AAAATTATATCTTAAATCATAA-TTCATATAT
1 AAAATTACATC--AAATCAAAATTTCATATAT
10790931 AA
1 AA
10790933 TTTTCGTATT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
29 14 0.26
30 23 0.43
31 16 0.30
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.36
Consensus pattern (30 bp):
AAAATTACATCAAATCAAAATTTCATATAT
Found at i:10790929 original size:31 final size:29
Alignment explanation
Indices: 10790841--10790932 Score: 94
Period size: 31 Copynumber: 3.1 Consensus size: 29
10790831 ATAATCTACA
* * *
10790841 AAAATTAGATCAAATCAAAATTTCATGTAT
1 AAAATTACATAAAATCAAAA-TTCATATAT
*
10790871 AAAATTACATAAAATCAAAATTTATATAT
1 AAAATTACATAAAATCAAAATTCATATAT
* * *
10790900 AAAATTATATCTTAAATCATAATTCATATAT
1 AAAATTACA--TAAAATCAAAATTCATATAT
10790931 AA
1 AA
10790933 TTTTCGTATT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
29 15 0.29
30 18 0.35
31 19 0.37
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.36
Consensus pattern (29 bp):
AAAATTACATAAAATCAAAATTCATATAT
Found at i:10791899 original size:16 final size:17
Alignment explanation
Indices: 10791863--10791901 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
10791853 AATTTTATTT
*
10791863 TAATAATAAGTTTTAAA
1 TAATATTAAGTTTTAAA
10791880 -AATATTAA-TTTTAAA
1 TAATATTAAGTTTTAAA
10791895 TAATATT
1 TAATATT
10791902 TTCACATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
TAATATTAAGTTTTAAA
Found at i:10792471 original size:14 final size:14
Alignment explanation
Indices: 10792452--10792490 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
10792442 TCATAAAAGT
*
10792452 AAATCATTTTTCAA
1 AAATCATTTTCCAA
*
10792466 AAATCATTTTCCAG
1 AAATCATTTTCCAA
*
10792480 AAATAATTTTC
1 AAATCATTTTC
10792491 TGAAAGTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:10792577 original size:26 final size:27
Alignment explanation
Indices: 10792538--10792594 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
10792528 CTCTAATTGG
* * *
10792538 TTTTCGAAAGTAATTTTTATTTTC-AT
1 TTTTAGAAAATAATTTTAATTTTCTAT
10792564 TTTTAGAAAATAATTTTAATTTTCTAT
1 TTTTAGAAAATAATTTTAATTTTCTAT
10792591 TTTT
1 TTTT
10792595 TTAAAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (27 bp):
TTTTAGAAAATAATTTTAATTTTCTAT
Found at i:10792949 original size:22 final size:23
Alignment explanation
Indices: 10792906--10792959 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
10792896 TTTTGAGCAA
* *
10792906 TTTAATTTTTTCTTTTATATTCT
1 TTTAACTTTTTCTTTTACATTCT
*
10792929 TTTAACTTTTT-TTTTCCATTCT
1 TTTAACTTTTTCTTTTACATTCT
*
10792951 CTTATACTT
1 TTTA-ACTT
10792960 CTCCCTGTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 12 0.46
23 14 0.54
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTAACTTTTTCTTTTACATTCT
Found at i:10794876 original size:12 final size:12
Alignment explanation
Indices: 10794861--10794885 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10794851 TACTGCTATT
10794861 GTTACTGTTACC
1 GTTACTGTTACC
10794873 GTTACTGTTACC
1 GTTACTGTTACC
10794885 G
1 G
10794886 ATACAGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:10795023 original size:18 final size:18
Alignment explanation
Indices: 10794997--10795168 Score: 191
Period size: 18 Copynumber: 9.6 Consensus size: 18
10794987 AAAATAAAGG
* * *
10794997 TACTAAATAACTGACTGC
1 TACTGAATAAATGACTGT
10795015 TACTGAATAAATGACTGT
1 TACTGAATAAATGACTGT
* * * *
10795033 TATTGAATAACTGATTAT
1 TACTGAATAAATGACTGT
*
10795051 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTGT
* *
10795069 GACTGAATAAATGATTGT
1 TACTGAATAAATGACTGT
* * *
10795087 TACTGAATAACTGATTTT
1 TACTGAATAAATGACTGT
*
10795105 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTGT
*
10795123 GACTGAATAAATGACTGT
1 TACTGAATAAATGACTGT
* *
10795141 TACTGAATAAATGATTAT
1 TACTGAATAAATGACTGT
10795159 TACTGAATAA
1 TACTGAATAA
10795169 CTGATTAATA
Statistics
Matches: 129, Mismatches: 25, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 129 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (18 bp):
TACTGAATAAATGACTGT
Found at i:10795067 original size:54 final size:54
Alignment explanation
Indices: 10794997--10795168 Score: 274
Period size: 54 Copynumber: 3.2 Consensus size: 54
10794987 AAAATAAAGG
* * *
10794997 TACTAAATAACTGACTGCT-ACTGAATAAATGACTGTTATTGAATAACTGATTAT
1 TACTGAATAATTGACTG-TGACTGAATAAATGACTGTTACTGAATAACTGATTAT
* *
10795051 TACTGAATAATTGACTGTGACTGAATAAATGATTGTTACTGAATAACTGATTTT
1 TACTGAATAATTGACTGTGACTGAATAAATGACTGTTACTGAATAACTGATTAT
*
10795105 TACTGAATAATTGACTGTGACTGAATAAATGACTGTTACTGAATAAATGATTAT
1 TACTGAATAATTGACTGTGACTGAATAAATGACTGTTACTGAATAACTGATTAT
10795159 TACTGAATAA
1 TACTGAATAA
10795169 CTGATTAATA
Statistics
Matches: 109, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
53 1 0.01
54 108 0.99
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (54 bp):
TACTGAATAATTGACTGTGACTGAATAAATGACTGTTACTGAATAACTGATTAT
Found at i:10796643 original size:31 final size:29
Alignment explanation
Indices: 10796605--10796680 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
10796595 TAATGGCTCG
* *
10796605 GTGACTAAAATGTTACATCACGTTAACATAA
1 GTGACTAAAATGTAACATCAC--AAACATAA
**
10796636 GTGACTAAAATGTAACATTTCAAACATAA
1 GTGACTAAAATGTAACATCACAAACATAA
10796665 GTGACTAAAATGTAAC
1 GTGACTAAAATGTAAC
10796681 TGAGGTAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 23 0.56
31 18 0.44
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (29 bp):
GTGACTAAAATGTAACATCACAAACATAA
Found at i:10797567 original size:17 final size:17
Alignment explanation
Indices: 10797547--10797583 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
10797537 GTTAAAACTG
10797547 TTTTTA-TCTCAAAAGTA
1 TTTTTATTC-CAAAAGTA
10797564 TTTTTATTCCAAAAGTA
1 TTTTTATTCCAAAAGTA
10797581 TTT
1 TTT
10797584 CTTAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.32, C:0.11, G:0.05, T:0.51
Consensus pattern (17 bp):
TTTTTATTCCAAAAGTA
Found at i:10799047 original size:12 final size:12
Alignment explanation
Indices: 10799030--10799063 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
10799020 CGGCCCGCCC
10799030 ATATTAATTTTT
1 ATATTAATTTTT
*
10799042 ATATTATTTTTT
1 ATATTAATTTTT
10799054 ATA-TAATTTT
1 ATATTAATTTT
10799064 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:10799220 original size:30 final size:30
Alignment explanation
Indices: 10799186--10799248 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
10799176 ACTTAACAAG
*
10799186 CAAATGT-TTCTAAAATAATAACAAAATTAA
1 CAAATGTGTT-TAAAATAATAAAAAAATTAA
10799216 CAAATGTGTTTAAAATAATAAAAAAATTAA
1 CAAATGTGTTTAAAATAATAAAAAAATTAA
10799246 CAA
1 CAA
10799249 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.29
Consensus pattern (30 bp):
CAAATGTGTTTAAAATAATAAAAAAATTAA
Found at i:10799303 original size:22 final size:22
Alignment explanation
Indices: 10799278--10799320 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
10799268 TATCCAAACA
10799278 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* *
10799300 ATAATAATAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
10799321 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.60, C:0.12, G:0.09, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:10803442 original size:37 final size:36
Alignment explanation
Indices: 10803363--10803444 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 36
10803353 TATTTACATT
* * *
10803363 AAATAATAAAATATTTTAAAATTATATTATGGTTAA
1 AAATAATTAAATATTTTAAAATCATATTATGATTAA
*
10803399 ATAATAATTAAATATTATTAAGATCATATCTAT-ATTAA
1 A-AATAATTAAATATT-TTAAAATCATAT-TATGATTAA
10803437 AAATAATT
1 AAATAATT
10803445 TTATTTAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
36 1 0.03
37 20 0.51
38 15 0.38
39 3 0.08
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.41
Consensus pattern (36 bp):
AAATAATTAAATATTTTAAAATCATATTATGATTAA
Found at i:10807138 original size:35 final size:35
Alignment explanation
Indices: 10807092--10807161 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
10807082 CCTTATACTT
*
10807092 AGATTTGTGCTATTTAGTACCTACGAGAAGCCTAA
1 AGATTTGTGCTATTTAGTACCCACGAGAAGCCTAA
*
10807127 AGATTTGTGCTATTTAGTGCCCACGAGAAGCCTAA
1 AGATTTGTGCTATTTAGTACCCACGAGAAGCCTAA
10807162 CCCTTGCCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (35 bp):
AGATTTGTGCTATTTAGTACCCACGAGAAGCCTAA
Found at i:10808652 original size:35 final size:35
Alignment explanation
Indices: 10808606--10808676 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
10808596 ATAGTATGAA
10808606 TGATTAAGTATGTAAAGTAAATTGAATGCGATGGT
1 TGATTAAGTATGTAAAGTAAATTGAATGCGATGGT
10808641 TGATTAAGTATGTAAAGTAAATTGAATGCGATGGT
1 TGATTAAGTATGTAAAGTAAATTGAATGCGATGGT
10808676 T
1 T
10808677 ATGTTTGATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.35
Consensus pattern (35 bp):
TGATTAAGTATGTAAAGTAAATTGAATGCGATGGT
Found at i:10813329 original size:24 final size:26
Alignment explanation
Indices: 10813302--10813349 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
10813292 TATGAATACG
10813302 TACAT-ATAATATA-ATAT-TAAAATA
1 TACATAAT-ATATACATATATAAAATA
10813326 TACATAATATATACATATATAAAA
1 TACATAATATATACATATATAAAA
10813350 CATGTATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 10 0.48
25 6 0.29
26 5 0.24
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (26 bp):
TACATAATATATACATATATAAAATA
Found at i:10813798 original size:3 final size:3
Alignment explanation
Indices: 10813790--10813838 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
10813780 ACATTAGAAG
10813790 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10813838 T
1 T
10813839 TAAAGTAGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10814398 original size:17 final size:17
Alignment explanation
Indices: 10814376--10814408 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10814366 AAAGTTGCCT
*
10814376 CTTTTTCTTTATTTTTA
1 CTTTTTATTTATTTTTA
10814393 CTTTTTATTTATTTTT
1 CTTTTTATTTATTTTT
10814409 TTATATGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (17 bp):
CTTTTTATTTATTTTTA
Found at i:10815426 original size:13 final size:12
Alignment explanation
Indices: 10815398--10815439 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
10815388 CGTTAGAATA
*
10815398 AAAAACAGAAATT
1 AAAAACA-AAAAT
10815411 AAAAACCAAAAAT
1 AAAAA-CAAAAAT
10815424 -AAAACAAAAAT
1 AAAAACAAAAAT
10815435 AAAAA
1 AAAAA
10815440 ACCTCAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 7 0.27
12 8 0.31
13 9 0.35
14 2 0.08
ACGTcount: A:0.79, C:0.10, G:0.02, T:0.10
Consensus pattern (12 bp):
AAAAACAAAAAT
Found at i:10815434 original size:25 final size:27
Alignment explanation
Indices: 10815399--10815452 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 27
10815389 GTTAGAATAA
* *
10815399 AAAACAGAAATTAAAAA-C-CAAAAAT
1 AAAACAAAAATAAAAAACCTCAAAAAT
10815424 AAAACAAAAATAAAAAACCTCAAAAAT
1 AAAACAAAAATAAAAAACCTCAAAAAT
10815451 AA
1 AA
10815453 TAAAAGTCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 15 0.60
26 1 0.04
27 9 0.36
ACGTcount: A:0.74, C:0.13, G:0.02, T:0.11
Consensus pattern (27 bp):
AAAACAAAAATAAAAAACCTCAAAAAT
Found at i:10815440 original size:13 final size:13
Alignment explanation
Indices: 10815394--10815441 Score: 55
Period size: 11 Copynumber: 3.8 Consensus size: 13
10815384 GGCCCGTTAG
10815394 AATAAAAAACAGAA
1 AATAAAAAACA-AA
* *
10815408 ATTAAAAACCAAA
1 AATAAAAAACAAA
10815421 AAT--AAAACAAA
1 AATAAAAAACAAA
10815432 AATAAAAAAC
1 AATAAAAAAC
10815442 CTCAAAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
11 10 0.36
13 9 0.32
14 9 0.32
ACGTcount: A:0.77, C:0.10, G:0.02, T:0.10
Consensus pattern (13 bp):
AATAAAAAACAAA
Found at i:10815916 original size:21 final size:21
Alignment explanation
Indices: 10815890--10815929 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10815880 TCCGTCTTCA
10815890 ATATATATT-TTTTCTTTTTGC
1 ATATATATTGTTTT-TTTTTGC
*
10815911 ATATATCTTGTTTTTTTTT
1 ATATATATTGTTTTTTTTT
10815930 AGTTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.17, C:0.07, G:0.05, T:0.70
Consensus pattern (21 bp):
ATATATATTGTTTTTTTTTGC
Found at i:10820907 original size:16 final size:16
Alignment explanation
Indices: 10820876--10820907 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10820866 TTTCCAAATT
*
10820876 TTTTTTTATTTTAAAA
1 TTTTTTTATTTAAAAA
10820892 TTTTTTTATTTAAAAA
1 TTTTTTTATTTAAAAA
10820908 AAAACTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTTTTATTTAAAAA
Found at i:10821306 original size:28 final size:29
Alignment explanation
Indices: 10821274--10821335 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
10821264 ATTTTACGTT
*
10821274 GAATAATATAATCC-TCCCAAACAAACCA
1 GAATAATATAATCCATCCAAAACAAACCA
*
10821302 GAATAATATAATCCATCCAAAACACACCA
1 GAATAATATAATCCATCCAAAACAAACCA
10821331 GAATA
1 GAATA
10821336 GCACAGAGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 14 0.45
29 17 0.55
ACGTcount: A:0.52, C:0.26, G:0.05, T:0.18
Consensus pattern (29 bp):
GAATAATATAATCCATCCAAAACAAACCA
Found at i:10821399 original size:13 final size:14
Alignment explanation
Indices: 10821376--10821405 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
10821366 GGATATAAAC
10821376 ATCAGCATCTCCAA
1 ATCAGCATCTCCAA
10821390 ATCA-CATCTCCAA
1 ATCAGCATCTCCAA
10821403 ATC
1 ATC
10821406 CCTTCTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.37, C:0.37, G:0.03, T:0.23
Consensus pattern (14 bp):
ATCAGCATCTCCAA
Found at i:10821522 original size:18 final size:17
Alignment explanation
Indices: 10821489--10821522 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
10821479 TTTTTTTTTA
*
10821489 AATTTCATTTCCATATC
1 AATTTCATTTCAATATC
10821506 AATTTCAATTTCAATAT
1 AATTTC-ATTTCAATAT
10821523 ACTTCCAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.18, G:0.00, T:0.47
Consensus pattern (17 bp):
AATTTCATTTCAATATC
Found at i:10822089 original size:26 final size:26
Alignment explanation
Indices: 10822053--10822160 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
10822043 ATACAAATTA
10822053 ATAATAGGTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATG
10822079 ATAATAGGTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATG
10822105 ATAATAGGTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATG
* *
10822131 ATAATGGGTTAGGTAAATGTTTCATG
1 ATAATAGGTTAGGTAAATGTTCCATG
10822157 ATAA
1 ATAA
10822161 GAATTTCATG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.35
Consensus pattern (26 bp):
ATAATAGGTTAGGTAAATGTTCCATG
Found at i:10824864 original size:20 final size:20
Alignment explanation
Indices: 10824826--10824864 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10824816 AATGGGTTTA
*
10824826 CAAAAAAAAACAAAGATTTT
1 CAAAAAAAAACAAAAATTTT
10824846 CAAAAATAAAA-AAAAATTT
1 CAAAAA-AAAACAAAAATTT
10824865 ATAAAGATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.69, C:0.08, G:0.03, T:0.21
Consensus pattern (20 bp):
CAAAAAAAAACAAAAATTTT
Found at i:10827809 original size:26 final size:26
Alignment explanation
Indices: 10827773--10827880 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
10827763 ATACAAATTA
10827773 ATAATAGGTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATG
10827799 ATAATAGGTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATG
* *
10827825 ATAATAGGTTAGGTAAATGTTTCACG
1 ATAATAGGTTAGGTAAATGTTCCATG
* *
10827851 ATAATGGGTTAGGTAAATGTTTCATG
1 ATAATAGGTTAGGTAAATGTTCCATG
10827877 ATAA
1 ATAA
10827881 GAATTTTATG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.35
Consensus pattern (26 bp):
ATAATAGGTTAGGTAAATGTTCCATG
Found at i:10831653 original size:46 final size:46
Alignment explanation
Indices: 10831603--10831778 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
10831593 TGGTTGAGCA
*
10831603 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
10831649 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
10831696 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
10831742 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
10831779 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:10831759 original size:93 final size:93
Alignment explanation
Indices: 10831600--10831771 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
10831590 GGATGGTTGA
* * * *
10831600 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
10831665 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
10831693 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTCATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
10831758 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
10831772 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:10834502 original size:23 final size:24
Alignment explanation
Indices: 10834476--10834521 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
10834466 TATCATTCAT
10834476 TTCATTATAT-CA-ATATTTTATGC
1 TTCA-TATATCCATATATTTTATGC
*
10834499 TTCATATTTCCATATATTTTATG
1 TTCATATATCCATATATTTTATG
10834522 TATATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 6 0.30
24 10 0.50
ACGTcount: A:0.28, C:0.13, G:0.04, T:0.54
Consensus pattern (24 bp):
TTCATATATCCATATATTTTATGC
Found at i:10834841 original size:46 final size:46
Alignment explanation
Indices: 10834776--10834902 Score: 175
Period size: 46 Copynumber: 2.8 Consensus size: 46
10834766 TTATCTTTGA
* * * *
10834776 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTC-TTTTCATGT
*
10834822 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCTTTTCATGT
* *
10834868 CACGTTGCCATGATATCTTTCAACCATGGTCTTAC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
10834903 ACACAGGTTG
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 5 0.07
46 67 0.93
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCTTTTCATGT
Found at i:10834923 original size:38 final size:38
Alignment explanation
Indices: 10834871--10834943 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
10834861 TTCATGTCAC
10834871 GTTGCCATGATATCTTTCAACCATGGTCTTACACACAG
1 GTTGCCATGATATCTTTCAACCATGGTCTTACACACAG
*
10834909 GTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 GTTGCCATGATATCTTTCAACCATGGTCTTACACA
10834944 TTTCATATCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (38 bp):
GTTGCCATGATATCTTTCAACCATGGTCTTACACACAG
Found at i:10837873 original size:13 final size:13
Alignment explanation
Indices: 10837850--10837891 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
10837840 TAATAATGGT
10837850 TAATAATTATA-A
1 TAATAATTATATA
*
10837862 TAATTATATATATA
1 TAATAAT-TATATA
*
10837876 TAATATTTATATA
1 TAATAATTATATA
10837889 TAA
1 TAA
10837892 CTTAAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 6 0.24
13 13 0.52
14 6 0.24
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATAATTATATA
Found at i:10837879 original size:17 final size:17
Alignment explanation
Indices: 10837857--10837890 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10837847 GGTTAATAAT
10837857 TATAATAATTATATATA
1 TATAATAATTATATATA
*
10837874 TATAATATTTATATATA
1 TATAATAATTATATATA
10837891 ACTTAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATAATAATTATATATA
Found at i:10838748 original size:22 final size:22
Alignment explanation
Indices: 10838723--10838811 Score: 72
Period size: 22 Copynumber: 3.9 Consensus size: 22
10838713 ACGCTAATAA
10838723 ACAGAGAGCACTAAAGTGCTAT
1 ACAGAGAGCACTAAAGTGCTAT
* *
10838745 ACAGAGAGCAC-AAATGTGCCAA
1 ACAGAGAGCACTAAA-GTGCTAT
* * *
10838767 ACAAAGAGTACTAACGTGCTAAT
1 ACAGAGAGCACTAAAGTGCT-AT
* *
10838790 AATCGGAGAGCACTAACGTGCT
1 -A-CAGAGAGCACTAAAGTGCT
10838812 TGAGAAAAAT
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
21 3 0.06
22 29 0.56
23 3 0.06
24 1 0.02
25 16 0.31
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.17
Consensus pattern (22 bp):
ACAGAGAGCACTAAAGTGCTAT
Found at i:10838842 original size:4 final size:5
Alignment explanation
Indices: 10838817--10838849 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
10838807 GTGCTTGAGA
10838817 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAA
10838850 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 18 0.69
6 4 0.15
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:10850770 original size:46 final size:46
Alignment explanation
Indices: 10850687--10850922 Score: 246
Period size: 46 Copynumber: 5.2 Consensus size: 46
10850677 TCCCATCCAC
* * * * * * *
10850687 GGTCTTATTTATCTT-TGACATGATGCCATAGTGTCTTTCAACTAT
1 GGTCTTACTTATTTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
*
10850732 GGTCTTACTTATTTTCTGTCAGGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTACTTATTTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
** * *
10850778 GGTCTTA-TTCA-TCCCCGTCATGTTGCCATGGTATCTTTCCACCAT
1 GGTCTTACTT-ATTTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
* **
10850823 GGTCTTA-TTCTTTTCATGTCACATTGCCATGGTATCTTTCAACCAT
1 GGTCTTACTTATTTTC-TGTCATGTTGCCATGGTATCTTTCAACCAT
** * * *
10850869 GGTCTTACACATTTTATATCCTGTTGCCATGGTATCTTTCAACCAT
1 GGTCTTACTTATTTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
10850915 GGTCTTAC
1 GGTCTTAC
10850923 ACATTTCATT
Statistics
Matches: 158, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
45 55 0.35
46 99 0.63
47 4 0.03
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (46 bp):
GGTCTTACTTATTTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
Found at i:10850843 original size:91 final size:92
Alignment explanation
Indices: 10850705--10850922 Score: 269
Period size: 91 Copynumber: 2.4 Consensus size: 92
10850695 TTATCTTTGA
* * * * **
10850705 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTTATTTTCTGTCAGGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTTATTTTCTGTCACATTGCCATGGTATCTT
** * *
10850770 TCAACCATGGTCTTATTCA-TCCCCGT
66 TCAACCATGGTCTTACACATTCCACAT
* *
10850796 CATGTTGCCATGGTATCTTTCCACCATGGTCTTA-TTCTTTTCATGTCACATTGCCATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTTATTTTC-TGTCACATTGCCATGGTATCT
** *
10850860 TTCAACCATGGTCTTACACATTTTATAT
65 TTCAACCATGGTCTTACACATTCCACAT
*
10850888 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
10850923 ACATTTCATT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
90 7 0.07
91 66 0.62
92 34 0.32
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (92 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTTATTTTCTGTCACATTGCCATGGTATCTT
TCAACCATGGTCTTACACATTCCACAT
Found at i:10852789 original size:16 final size:15
Alignment explanation
Indices: 10852764--10852794 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
10852754 CTTTTATACT
10852764 AAATAAATAATAATA
1 AAATAAATAATAATA
10852779 AAATAAAATAATAATA
1 AAAT-AAATAATAATA
10852795 CTAAAACATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AAATAAATAATAATA
Found at i:10876732 original size:5 final size:5
Alignment explanation
Indices: 10876722--10876755 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
10876712 AATTTCAAGA
*
10876722 AAAAC AAAAC AAAAC AAAAC AAACTC AAAAC AAA
1 AAAAC AAAAC AAAAC AAAAC AAA-AC AAAAC AAA
10876756 TAGAAAATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.76, C:0.21, G:0.00, T:0.03
Consensus pattern (5 bp):
AAAAC
Found at i:10876845 original size:21 final size:23
Alignment explanation
Indices: 10876814--10876856 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
10876804 ATAATCACCT
10876814 AATATTTTAATAAAAA-ATTAAC
1 AATATTTTAATAAAAATATTAAC
10876836 AATA-TTTAATAAAAATATTAA
1 AATATTTTAATAAAAATATTAA
10876857 AAATTAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
AATATTTTAATAAAAATATTAAC
Found at i:10876866 original size:20 final size:21
Alignment explanation
Indices: 10876822--10876866 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
10876812 CTAATATTTT
*
10876822 AATAAAAAATTAACAATATTT
1 AATAAAAAATTAACAATATTA
10876843 AATAAAAATATTAA-AA-ATTA
1 AATAAAAA-ATTAACAATATTA
10876863 AATA
1 AATA
10876867 TTAATTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
21 10 0.45
22 5 0.23
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (21 bp):
AATAAAAAATTAACAATATTA
Found at i:10882533 original size:29 final size:29
Alignment explanation
Indices: 10882487--10882582 Score: 90
Period size: 29 Copynumber: 3.2 Consensus size: 29
10882477 AAAGTTGTAG
*
10882487 ATTTAGTCCACATA-TTTT-AATTTGATCAA
1 ATTTAGTCC-TATACTTTTAAATTT-ATCAA
10882516 ATTTAGTCCTATACTTTTAAATTTATCAA
1 ATTTAGTCCTATACTTTTAAATTTATCAA
* * *
10882545 TTTTAGTCACTTTACTTTTCAAAATTT-TAAA
1 ATTTAGTC-CTATACTTTT--AAATTTATCAA
10882576 ATTTAGT
1 ATTTAGT
10882583 TTTAACCCAA
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
28 3 0.05
29 25 0.44
30 14 0.25
31 9 0.16
32 6 0.11
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.49
Consensus pattern (29 bp):
ATTTAGTCCTATACTTTTAAATTTATCAA
Found at i:10886833 original size:75 final size:75
Alignment explanation
Indices: 10886706--10887113 Score: 532
Period size: 75 Copynumber: 5.4 Consensus size: 75
10886696 GCAGAGGAGG
* * * * * *
10886706 TTGCACCCAGCGCTAGTCGGAT-TAATCGACGGTATTGAA-TGTGAGCCTAGCTCTAGTTGAATA
1 TTGCACCCAGTGCTAGTCGGATAT-ACCGACGATAAT-AATTGTGAGCCCAGCTCTAGTTGGATA
* *
10886769 ATCCAACGATAT
64 AACCAACAATAT
* * *
10886781 CTGCACCCAGTGCTAGTCGGATATATCGACGATAATAATTGTAAGCCCAGCTCTAGTTGGATAAA
1 TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAA
10886846 CCAACAATAT
66 CCAACAATAT
* * * *
10886856 TTACACCCAGTACTAGTCGGATATACCGACGATAATACTTGTGAGCCCAACTCTAGTTGGATAAA
1 TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAA
10886921 CCAACAATAT
66 CCAACAATAT
** * *
10886931 TTGCACCCAAAGCTAGTTGGATATACCGATGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAA
1 TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAA
10886996 CCAACAATAT
66 CCAACAATAT
* * *
10887006 TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTTAGCCTAGCTCTAGTTGGATAAG
1 TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAA
* ** *
10887071 TCAACGGTAA
66 CCAACAATAT
* *
10887081 TTGCACCCAGCGCTAGTCGGATAAACCGACGAT
1 TTGCACCCAGTGCTAGTCGGATATACCGACGAT
10887114 TATGTGACCA
Statistics
Matches: 294, Mismatches: 37, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
74 2 0.01
75 291 0.99
76 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (75 bp):
TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAA
CCAACAATAT
Found at i:10886872 original size:35 final size:34
Alignment explanation
Indices: 10886826--10887028 Score: 115
Period size: 35 Copynumber: 5.5 Consensus size: 34
10886816 TAATTGTAAG
10886826 CCCAGCTCTAGTTGGATAAACCAACAATATTTACA
1 CCCAG-TCTAGTTGGATAAACCAACAATATTTACA
* * *
10886861 CCCAGTACTAGTCGGATATACCGACGATAATACTTGTGAGC-
1 CCCAGT-CTAGTTGGATAAACC-A--ACAATA-TT-T-A-CA
* * *
10886902 CCAACTCTAGTTGGATAAACCAACAATATTTGCA
1 CCCAGTCTAGTTGGATAAACCAACAATATTTACA
* * *
10886936 CCCAAAG-CTAGTTGGATATACCGATGATAATAATTGTGA-G
1 CCC--AGTCTAGTTGGATAAACC-A--ACAAT-ATT-T-ACA
*
10886976 CCCAGCTCTAGTTGGATAAACCAACAATATTTGCA
1 CCCAG-TCTAGTTGGATAAACCAACAATATTTACA
*
10887011 CCCAGTGCTAGTCGGATA
1 CCCAGT-CTAGTTGGATA
10887029 TACCGACGAT
Statistics
Matches: 127, Mismatches: 20, Indels: 42
0.67 0.11 0.22
Matches are distributed among these distances:
33 1 0.01
34 4 0.03
35 49 0.39
36 8 0.06
37 9 0.07
38 11 0.09
39 7 0.06
40 32 0.25
41 5 0.04
42 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (34 bp):
CCCAGTCTAGTTGGATAAACCAACAATATTTACA
Found at i:10889047 original size:40 final size:40
Alignment explanation
Indices: 10888990--10889215 Score: 190
Period size: 39 Copynumber: 5.7 Consensus size: 40
10888980 ATATTTGATG
* *
10888990 TGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGTTGGAAT
1 TGTATCCGGACTTAAAGACCCGCAGGCT-TCGTGTTGGAAT
* * * *
10889030 TATATCCGGGCTTAAAGACCTGCAGGCTTCGTGTTAGAAT
1 TGTATCCGGACTTAAAGACCCGCAGGCTTCGTGTTGGAAT
** *
10889070 TGTATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGACTTAAAGACCCGCAGGCTTCGTGTTGGAAT
* * * * *
10889109 TGTATCCGGACTT-AAGATCCGTAGGCTTCGTGCTGGTAC
1 TGTATCCGGACTTAAAGACCCGCAGGCTTCGTGTTGGAAT
* ** ** * *
10889148 TATATCCGGACTT-AAGGTCCGCAGGCTTCGTACTGGTAC
1 TGTATCCGGACTTAAAGACCCGCAGGCTTCGTGTTGGAAT
* * * *
10889187 TATATCCGGGCTTAAAGTCCCGTAGGCTT
1 TGTATCCGGACTTAAAGACCCGCAGGCTT
10889216 TGTATTGGTG
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 104 0.65
40 57 0.35
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (40 bp):
TGTATCCGGACTTAAAGACCCGCAGGCTTCGTGTTGGAAT
Found at i:10889109 original size:39 final size:39
Alignment explanation
Indices: 10889024--10889215 Score: 213
Period size: 39 Copynumber: 4.9 Consensus size: 39
10889014 GGCTATATGT
* * * *
10889024 TGGAATTATATCCGGGCTTAAAGACCTGCAGGCTTCGTGT
1 TGGAATTATATCCGGACTTAAGGTCC-GCAGGCTTCGTGC
* *
10889064 TAGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCGTGC
* * *
10889103 TGGAATTGTATCCGGACTTAAGATCCGTAGGCTTCGTGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCGTGC
* * *
10889142 TGGTACTATATCCGGACTTAAGGTCCGCAGGCTTCGTAC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCGTGC
* * * * *
10889181 TGGTACTATATCCGGGCTTAAAGTCCCGTAGGCTT
1 TGGAATTATATCCGGACTTAAGGT-CCGCAGGCTT
10889216 TGTATTGGTG
Statistics
Matches: 133, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 103 0.77
40 30 0.23
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (39 bp):
TGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCGTGC
Found at i:10894005 original size:40 final size:39
Alignment explanation
Indices: 10893950--10894121 Score: 202
Period size: 39 Copynumber: 4.4 Consensus size: 39
10893940 ATTTGATGTG
* **
10893950 TATCCGGGCTTAAAGACCCGCAGG-TTATATGCTGGAATTA
1 TATCCGGACTT-AAGACCCGCAGGCTT-CGTGCTGGAATTA
* *
10893990 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGACCCGCAGGCTTCGTGCTGGAATTA
** *
10894030 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTT
1 TATCCGGACTTAAGACCCGCAGGCTTCGTGCTGGAATTA
* * * *
10894069 TATCCGGACTTAAGATCCGCAGTCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGACCCGCAGGCTTCGTGCTGGAATTA
10894108 TATCCGGACTTAAG
1 TATCCGGACTTAAG
10894122 GTTCGTAGGC
Statistics
Matches: 119, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 73 0.61
40 44 0.37
41 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGACCCGCAGGCTTCGTGCTGGAATTA
Found at i:10894061 original size:39 final size:39
Alignment explanation
Indices: 10893979--10894159 Score: 209
Period size: 39 Copynumber: 4.6 Consensus size: 39
10893969 GCAGGTTATA
* *
10893979 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGACTT-AAGATCCGCAGGCTTCG
* *
10894019 TGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGATCCGCAGGCTTCG
* *
10894058 TGCTGGAATTTTATCCGGACTTAAGATCCGCAGTCTTCG
1 TGCTGGAATTATATCCGGACTTAAGATCCGCAGGCTTCG
* * * * *
10894097 TGCTGGTACTATATCCGGACTTAAGGTTCGTAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGATCCGCAGGCTTCG
* * * * *
10894136 TACTGGTACTATATCTGGGCTTAA
1 TGCTGGAATTATATCCGGACTTAA
10894160 AGTCCCGTAG
Statistics
Matches: 124, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 104 0.84
40 20 0.16
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (39 bp):
TGCTGGAATTATATCCGGACTTAAGATCCGCAGGCTTCG
Found at i:10894119 original size:78 final size:79
Alignment explanation
Indices: 10893979--10894173 Score: 239
Period size: 78 Copynumber: 2.5 Consensus size: 79
10893969 GCAGGTTATA
* * *
10893979 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAG
1 TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAG
10894044 GTCCGCAGGCTTCG
66 GTCCGCAGGCTTCG
* * * *
10894058 TGCTGGAATTTTATCCGGACTT-AAGATCCGCAGTCTTCGTGCTGGTACTATATCCGGACTTAAG
1 TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAG
* *
10894122 GTTCGTAGGCTTCG
66 GTCCGCAGGCTTCG
* * * * * * *
10894136 TACTGGTACTATATCTGGGCTTAAAGTCCCGTAGGCTT
1 TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTT
10894174 TGTGTTGGTG
Statistics
Matches: 96, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 65 0.68
79 31 0.32
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.31
Consensus pattern (79 bp):
TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAG
GTCCGCAGGCTTCG
Found at i:10896964 original size:21 final size:21
Alignment explanation
Indices: 10896940--10896994 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
10896930 GGGTATCATC
*
10896940 TTTTTAGTGAGTTAGGGTAGA
1 TTTTTAATGAGTTAGGGTAGA
10896961 TTTTTAATGAGTTAGGGTAG-
1 TTTTTAATGAGTTAGGGTAGA
*
10896981 TTTGTAACTGAGTT
1 TTTTTAA-TGAGTT
10896995 GGGCAGCTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 6 0.19
21 25 0.81
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.45
Consensus pattern (21 bp):
TTTTTAATGAGTTAGGGTAGA
Found at i:10897685 original size:2 final size:2
Alignment explanation
Indices: 10897678--10897746 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
10897668 CAACAAACAA
10897678 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
10897720 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
10897747 TACCCATAAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:10897888 original size:79 final size:79
Alignment explanation
Indices: 10897752--10898017 Score: 263
Period size: 77 Copynumber: 3.4 Consensus size: 79
10897742 ACACATACCC
* * *
10897752 ATAAAAAATAGTCACTGCATGCAAATTAAAAAATAGTCAATAGCATGTGACCATCCCCACCAGCA
1 ATAAAAAA-AGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACA
*
10897817 ATCATACACACACAT
65 ATCATACACACACAA
* * * * *
10897832 CTAAAAAACAGTCACTGCATGCATATT-AAAAATAATCAACAGCATATGACCATCCCCATCAATA
1 ATAAAAAA-AGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACA
* *
10897896 ATCATACATAGACAA
65 ATCATACACACACAA
* * * * * * *
10897911 ATTAAAAAA--CACTGTATGTATATTGAAAAACAGTCAACAGCATGTGACCAACCCTACCAACAA
1 ATAAAAAAAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
* * *
10897974 TCATACACAAATAG
66 TCATACACACACAA
* * *
10897988 ATTAGAAAA-T-ATTGCATGCATATTAAAAAA
1 ATAAAAAAAGTCACTGCATGCATATTAAAAAA
10898018 CCCTCACTAA
Statistics
Matches: 152, Mismatches: 32, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
76 13 0.09
77 65 0.43
78 1 0.01
79 49 0.32
80 24 0.16
ACGTcount: A:0.47, C:0.22, G:0.09, T:0.22
Consensus pattern (79 bp):
ATAAAAAAAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
TCATACACACACAA
Found at i:10897917 original size:80 final size:80
Alignment explanation
Indices: 10897753--10897980 Score: 252
Period size: 79 Copynumber: 2.9 Consensus size: 80
10897743 CACATACCCA
* * *
10897753 TAAAAAATAGTCACTGCATGCAAATTAAAAAATAGTCAATAGCATGTGACCATCCCCACCAGCAA
1 TAAAAAA-AGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
*
10897818 TCATAC-ACACACATC
65 TCATACAACACAAATC
* * * *
10897833 TAAAAAACAGTCACTGCATGCATATT-AAAAATAATCAACAGCATATGACCATCCCCATCAATAA
1 TAAAAAA-AGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
*
10897897 TCATACATAGACAAAT-
65 TCATACA-ACACAAATC
* * * * * *
10897913 T-AAAAAA--CACTGTATGTATATTGAAAAACAGTCAACAGCATGTGACCAACCCTACCAACAAT
1 TAAAAAAAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAAT
10897975 CATACA
66 CATACA
10897981 CAAATAGATT
Statistics
Matches: 126, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
76 13 0.10
77 38 0.30
78 1 0.01
79 43 0.34
80 25 0.20
81 6 0.05
ACGTcount: A:0.46, C:0.24, G:0.09, T:0.21
Consensus pattern (80 bp):
TAAAAAAAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAAT
CATACAACACAAATC
Found at i:10900242 original size:6 final size:6
Alignment explanation
Indices: 10900226--10900278 Score: 88
Period size: 6 Copynumber: 8.7 Consensus size: 6
10900216 AAATAACCCT
*
10900226 AAATCCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATTA AAATCA
1 AAAT-CA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
10900275 AAAT
1 AAAT
10900279 TGAAATCGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
6 40 0.91
7 4 0.09
ACGTcount: A:0.66, C:0.15, G:0.00, T:0.19
Consensus pattern (6 bp):
AAATCA
Found at i:10900314 original size:16 final size:17
Alignment explanation
Indices: 10900294--10900332 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
10900284 TCGAACTAAC
*
10900294 CCAAAATAACCTTAAAT
1 CCAAAATAACCCTAAAT
10900311 -CAAAATAACCCTAAAT
1 CCAAAATAACCCTAAAT
10900327 CCAAAA
1 CCAAAA
10900333 AAAGAAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.56, C:0.26, G:0.00, T:0.18
Consensus pattern (17 bp):
CCAAAATAACCCTAAAT
Found at i:10915896 original size:13 final size:13
Alignment explanation
Indices: 10915864--10915905 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
10915854 TCGTTTTTGG
10915864 AAAGTGC-TGTGA
1 AAAGTGCTTGTGA
*
10915876 AGATGTGCTTGTGA
1 A-AAGTGCTTGTGA
*
10915890 AAAGTGCTTTTGA
1 AAAGTGCTTGTGA
10915903 AAA
1 AAA
10915906 ACTTGGTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 1 0.04
13 18 0.72
14 6 0.24
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (13 bp):
AAAGTGCTTGTGA
Found at i:10923350 original size:130 final size:129
Alignment explanation
Indices: 10923117--10923380 Score: 510
Period size: 130 Copynumber: 2.0 Consensus size: 129
10923107 GGGTTTCTTC
10923117 TAGTCATAAACTATAAAAACCTGCCAAAAGCAAATAAAATAAAAGTTAGTAATTAAAATAAAAAC
1 TAGTCATAAACTATAAAAACCTGCCAAAAGCAAATAAAATAAAAGTTAGTAATTAAAATAAAAAC
10923182 AAAATTAAATTGCAATAAAAATAAAAATAGCTAAAGTAATAAAAATTAAAGCGTTCCTAATATAT
66 AAAATTAAATTGCAATAAAAATAAAAATAGCTAAAGTAATAAAAATT-AAGCGTTCCTAATATAT
10923247 TAGTCATAAACTATAAAAACCTGCCAAAAGCAAATAAAATAAAAGTTAGTAATTAAAATAAAAAC
1 TAGTCATAAACTATAAAAACCTGCCAAAAGCAAATAAAATAAAAGTTAGTAATTAAAATAAAAAC
*
10923312 AAAATTAAATTGCAATAAAAATAAAAATAGCTAAAGTAATAAAAATTAAGCGTTCCTAATATCT
66 AAAATTAAATTGCAATAAAAATAAAAATAGCTAAAGTAATAAAAATTAAGCGTTCCTAATATAT
10923376 TAGTC
1 TAGTC
10923381 CCCGGCAACA
Statistics
Matches: 133, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
129 21 0.16
130 112 0.84
ACGTcount: A:0.56, C:0.11, G:0.08, T:0.25
Consensus pattern (129 bp):
TAGTCATAAACTATAAAAACCTGCCAAAAGCAAATAAAATAAAAGTTAGTAATTAAAATAAAAAC
AAAATTAAATTGCAATAAAAATAAAAATAGCTAAAGTAATAAAAATTAAGCGTTCCTAATATAT
Found at i:10928125 original size:19 final size:19
Alignment explanation
Indices: 10928060--10928125 Score: 53
Period size: 19 Copynumber: 3.3 Consensus size: 19
10928050 AAAGTGCAGG
*
10928060 ATAGAAAATAAAAAAATAA
1 ATAGAAAATAAAGAAATAA
* * *
10928079 ATAAAATCAAATTAAGATATGAA
1 AT-AGA--AAATAAAGAAAT-AA
10928102 A-AGAAAATAAAGAAATAA
1 ATAGAAAATAAAGAAATAA
10928120 ATAGAA
1 ATAGAA
10928126 TGAGGGGTAA
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
18 3 0.09
19 16 0.46
20 2 0.06
21 2 0.06
22 9 0.26
23 3 0.09
ACGTcount: A:0.71, C:0.02, G:0.09, T:0.18
Consensus pattern (19 bp):
ATAGAAAATAAAGAAATAA
Found at i:10931729 original size:55 final size:54
Alignment explanation
Indices: 10931664--10931776 Score: 208
Period size: 55 Copynumber: 2.1 Consensus size: 54
10931654 ATTTTTCTTT
*
10931664 AAAAAATAGAGGTCCTGATGGGTTTCTTCTAGTCATAAACTATAAAAACCTGCC
1 AAAAAATAGAGGTCCTGATGCGTTTCTTCTAGTCATAAACTATAAAAACCTGCC
10931718 AAAAAAGTAGAGGTCCTGATGCGTTTCTTCTAGTCATAAACTATAAAAACCTGCC
1 AAAAAA-TAGAGGTCCTGATGCGTTTCTTCTAGTCATAAACTATAAAAACCTGCC
10931773 AAAA
1 AAAA
10931777 GCAAATAAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
54 6 0.11
55 51 0.89
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (54 bp):
AAAAAATAGAGGTCCTGATGCGTTTCTTCTAGTCATAAACTATAAAAACCTGCC
Found at i:10933284 original size:18 final size:18
Alignment explanation
Indices: 10933239--10933297 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
10933229 GGTTTGTCAG
* * *
10933239 CAGTTGCAGTCTGTTATC
1 CAGTAGCAGTCAGTTATT
* *
10933257 CAATAACAGTCAGTTATT
1 CAGTAGCAGTCAGTTATT
* *
10933275 CAGTAGCAGTTAATTATT
1 CAGTAGCAGTCAGTTATT
10933293 CAGTA
1 CAGTA
10933298 CCTTTATTTA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (18 bp):
CAGTAGCAGTCAGTTATT
Found at i:10934986 original size:40 final size:42
Alignment explanation
Indices: 10934910--10934994 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 42
10934900 TAATATTTAT
10934910 TATAATATCAATTTAATAATAACATAACATTAATATTTACTTAAA
1 TATAATATCAATTTAATAATAAC--AACATTAATATTTA-TTAAA
10934955 TATAATAT-AATTT-ATAATAAC-ACATGT-ATATTTATTAAA
1 TATAATATCAATTTAATAATAACAACAT-TAATATTTATTAAA
10934994 T
1 T
10934995 TATATACACA
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
39 6 0.15
40 11 0.28
41 1 0.03
43 8 0.21
44 5 0.13
45 8 0.21
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.42
Consensus pattern (42 bp):
TATAATATCAATTTAATAATAACAACATTAATATTTATTAAA
Found at i:10937055 original size:47 final size:48
Alignment explanation
Indices: 10936930--10937061 Score: 162
Period size: 47 Copynumber: 2.8 Consensus size: 48
10936920 GTGCGAGTTA
**
10936930 TACCTTGATTTGGCTACAGGCCATGGTATAGGTA-TTTTGGAGAGGAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTTCAGGAGA-GAGT
* ** *
10936978 TACCTTAATTTGGCTATGGGCTATGGTATAGGTACTTCAGG-GTA-AGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTTCAGGAG-AGAGT
*
10937025 TACCTTGATTTGGCTACAGGCCATGATATAGGTACTT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTT
10937062 ATCGATTAAG
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
47 35 0.49
48 31 0.44
49 5 0.07
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.35
Consensus pattern (48 bp):
TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTTCAGGAGAGAGT
Found at i:10940827 original size:32 final size:34
Alignment explanation
Indices: 10940786--10940857 Score: 112
Period size: 32 Copynumber: 2.2 Consensus size: 34
10940776 GGTCCAATAT
*
10940786 TGTTTTTAGCTTTTGAATTGAGATTCCATC-A-C
1 TGTTTTTAGCTTCTGAATTGAGATTCCATCAATC
*
10940818 TGTTTTTAGCTTCTGAATTGAGTTTCCATCAATC
1 TGTTTTTAGCTTCTGAATTGAGATTCCATCAATC
10940852 TGTTTT
1 TGTTTT
10940858 ATAATAATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
32 28 0.78
33 1 0.03
34 7 0.19
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.50
Consensus pattern (34 bp):
TGTTTTTAGCTTCTGAATTGAGATTCCATCAATC
Found at i:10942149 original size:22 final size:23
Alignment explanation
Indices: 10942123--10942167 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
10942113 GACTTCCTAA
10942123 CCAAGTT-ATGACTCGATTGAGG
1 CCAAGTTGATGACTCGATTGAGG
*
10942145 CCAAGTTGATGACTCGGTTGAGG
1 CCAAGTTGATGACTCGATTGAGG
10942168 GTGACAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (23 bp):
CCAAGTTGATGACTCGATTGAGG
Found at i:10945547 original size:3 final size:3
Alignment explanation
Indices: 10945541--10945575 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
10945531 CACAGAAAAA
10945541 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
10945576 TGCTTTGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:10948486 original size:10 final size:10
Alignment explanation
Indices: 10948471--10948498 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
10948461 AATTTAAAAA
10948471 ATATTTTTTT
1 ATATTTTTTT
10948481 ATATTTTTTT
1 ATATTTTTTT
10948491 ATATTTTT
1 ATATTTTT
10948499 AATGATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (10 bp):
ATATTTTTTT
Found at i:10948507 original size:17 final size:17
Alignment explanation
Indices: 10948486--10948521 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
10948476 TTTTTATATT
*
10948486 TTTTTATATTTTTAATGA
1 TTTTTA-ATTATTAATGA
10948504 TTTTTAATTATTAATGA
1 TTTTTAATTATTAATGA
10948521 T
1 T
10948522 GGTTTTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (17 bp):
TTTTTAATTATTAATGA
Found at i:10949108 original size:17 final size:18
Alignment explanation
Indices: 10949086--10949125 Score: 73
Period size: 17 Copynumber: 2.3 Consensus size: 18
10949076 AATTTTATTG
10949086 TAATTTTTTAGT-TTTTA
1 TAATTTTTTAGTATTTTA
10949103 TAATTTTTTAGTATTTTA
1 TAATTTTTTAGTATTTTA
10949121 TAATT
1 TAATT
10949126 ATAAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
TAATTTTTTAGTATTTTA
Found at i:10949509 original size:24 final size:24
Alignment explanation
Indices: 10949488--10949542 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 24
10949478 TCAATTATTG
10949488 TTAT-AAATATTCAAAAATTTATAA
1 TTATAAAATATT-AAAAATTTATAA
*
10949512 TTATAAAATATTAAAAA-TTAAAA
1 TTATAAAATATTAAAAATTTATAA
10949535 TTATAAAA
1 TTATAAAA
10949543 AAAAAAAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 13 0.45
24 9 0.31
25 7 0.24
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
TTATAAAATATTAAAAATTTATAA
Found at i:10949550 original size:23 final size:23
Alignment explanation
Indices: 10949500--10949550 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
10949490 ATAAATATTC
* * * *
10949500 AAAAATTTATAATTATAAAATAT
1 AAAAAATTAAAATTATAAAAAAA
*
10949523 TAAAAATTAAAATTATAAAAAAA
1 AAAAAATTAAAATTATAAAAAAA
10949546 AAAAA
1 AAAAA
10949551 CAATTCAACC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (23 bp):
AAAAAATTAAAATTATAAAAAAA
Found at i:10968189 original size:11 final size:11
Alignment explanation
Indices: 10968173--10968197 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10968163 TTTAATAAGA
10968173 TATTTTATTAT
1 TATTTTATTAT
10968184 TATTTTATTAT
1 TATTTTATTAT
10968195 TAT
1 TAT
10968198 ATAAAGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:10969383 original size:21 final size:20
Alignment explanation
Indices: 10969323--10969383 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
10969313 AGCTCTTTTG
*
10969323 AGCTTCTATTTAACCCTTAT
1 AGCTTCTGTTTAACCCTTAT
* * * *
10969343 AGGTTTTCGTTCAACTCTTAT
1 AGCTTCT-GTTTAACCCTTAT
10969364 AAGCTTCTGTTTAACCCTTA
1 -AGCTTCTGTTTAACCCTTA
10969384 CGGGTTTCCG
Statistics
Matches: 30, Mismatches: 9, Indels: 3
0.71 0.21 0.07
Matches are distributed among these distances:
20 5 0.17
21 20 0.67
22 5 0.17
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.44
Consensus pattern (20 bp):
AGCTTCTGTTTAACCCTTAT
Found at i:10969414 original size:42 final size:42
Alignment explanation
Indices: 10969266--10969415 Score: 165
Period size: 42 Copynumber: 3.6 Consensus size: 42
10969256 GTTTACTTTA
* * * *
10969266 CGTTTAGCTCTCATGAGTTTCAGTTTAACCCTAATGGGTTTC
1 CGTTTAGCTCTTATGAGCTTCTGTTTAACCCTTATGGGTTTC
* * * * *
10969308 CATTTAGCTCTTTTGAGCTTCTATTTAACCCTTATAGGTTTT
1 CGTTTAGCTCTTATGAGCTTCTGTTTAACCCTTATGGGTTTC
* * * *
10969350 CGTTCAACTCTTATAAGCTTCTGTTTAACCCTTACGGGTTTC
1 CGTTTAGCTCTTATGAGCTTCTGTTTAACCCTTATGGGTTTC
* *
10969392 CGTTTAGCACTTATGTGCTTCTGT
1 CGTTTAGCTCTTATGAGCTTCTGT
10969416 ACAACCTTCG
Statistics
Matches: 85, Mismatches: 23, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
42 85 1.00
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.44
Consensus pattern (42 bp):
CGTTTAGCTCTTATGAGCTTCTGTTTAACCCTTATGGGTTTC
Found at i:10973467 original size:28 final size:28
Alignment explanation
Indices: 10973414--10973497 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
10973404 CACTTTGTGC
10973414 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
10973443 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
10973471 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
10973498 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:10973509 original size:23 final size:24
Alignment explanation
Indices: 10973418--10973511 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
10973408 TTGTGCTATT
10973418 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
10973445 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
10973475 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
10973498 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
10973512 TTAGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:10973732 original size:23 final size:22
Alignment explanation
Indices: 10973702--10973788 Score: 74
Period size: 21 Copynumber: 4.0 Consensus size: 22
10973692 GCTTTACTGA
10973702 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCAC-TTATGTGTCGTATT
* *
10973725 TCAGGCACATTGTGTGTCGCA--
1 TCAGGCAC-TTATGTGTCGTATT
* **
10973746 GCAGGCACCTCGTGTGTCG--TT
1 TCAGGCA-CTTATGTGTCGTATT
10973767 TCAGGCACTTATGTGTCGTATT
1 TCAGGCACTTATGTGTCGTATT
10973789 CTGATCAGGT
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
20 9 0.18
21 21 0.41
22 3 0.06
23 18 0.35
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (22 bp):
TCAGGCACTTATGTGTCGTATT
Found at i:10976613 original size:20 final size:21
Alignment explanation
Indices: 10976577--10976624 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
10976567 ATTTTGATAT
*
10976577 ACATGATTTGATATGATATGC
1 ACATGATATGATATGATATGC
10976598 ACATGATATG-TATGATATGC
1 ACATGATATGATATGATATGC
10976618 ACATGAT
1 ACATGAT
10976625 GTATTCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:10976709 original size:25 final size:25
Alignment explanation
Indices: 10976675--10976744 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
10976665 GAGGAAGTGC
*
10976675 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
10976700 AAAAGGGCTTCGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
10976725 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
10976745 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:10976757 original size:24 final size:24
Alignment explanation
Indices: 10976674--10976757 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
10976664 GGAGGAAGTG
*
10976674 CAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAGGGCTTTGCCCCAGTTTAT
*
10976698 CGAAAAGGGCTTCGCCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
10976723 CAAAAAGGGCTTTGCCCCAG-TTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
*
10976747 TAAAAGAGGCT
1 CAAAAG-GGCT
10976758 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
23 5 0.09
24 9 0.17
25 39 0.74
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.24
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:10977794 original size:38 final size:38
Alignment explanation
Indices: 10977732--10977858 Score: 211
Period size: 38 Copynumber: 3.3 Consensus size: 38
10977722 GGTCCTTAAC
*
10977732 CCGGATATTTTTCCAGCACT-TAGCCTGCGGACTTTAAGT
1 CCGGAT-TTATTCCAGCA-TATAGCCTGCGGACTTTAAGT
10977771 CCGGATTTATTCCAGCATATAGCCTGCGGACTTTAAGT
1 CCGGATTTATTCCAGCATATAGCCTGCGGACTTTAAGT
10977809 CCGGATTTATTCCAGCATATAGCCTGCGGACTTTAAGT
1 CCGGATTTATTCCAGCATATAGCCTGCGGACTTTAAGT
*
10977847 CCAGATTTATTC
1 CCGGATTTATTC
10977859 TTTTACTGAG
Statistics
Matches: 85, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
37 1 0.01
38 78 0.92
39 6 0.07
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (38 bp):
CCGGATTTATTCCAGCATATAGCCTGCGGACTTTAAGT
Done.