Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 330 of 352
Found at i:106439977 original size:15 final size:14
Alignment explanation
Indices: 106439941--106439973 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
106439931 CGCTAAGGTA
106439941 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
106439955 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
106439969 TTTTC
1 TTTTC
106439974 CAAAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:106440006 original size:91 final size:90
Alignment explanation
Indices: 106439838--106440330 Score: 318
Period size: 92 Copynumber: 5.3 Consensus size: 90
106439828 GAACCTCAAG
* * * * * * * * *
106439838 ACGCTGAGATGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAAATTAGCTCATATTG
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAATTTATGTTTTTC-AAAAAAATCAACTCATATTG
*
106439903 CGAGTGGTGAGTTGAGCCTTGACTCAC
65 CGAGAGGTGAGTTGAGCCTTGA-TCAC
* *
106439930 ACGCTAAGGTATTTTCAAATTCTGTTTTTCAAATTT-TGTTTTTCCAAAAAATCAACTCATATTG
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTG
* * **
106439994 CGAGAGGTGAGTTCAGCC-TCAGGAC
65 CGAGAGGTGAGTTGAGCCTTGATCAC
* * * *
106440019 ACGCTGAGATATTTTCAATTTCTTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATAT
1 ACGCTGAGGTATTTTCAAATTC---TGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATAT
* *
106440084 TGTGAGAGGTGAGTTGAGCCTCAGATCAC
63 TGCGAGAGGTGAGTTGAGCCT-TGATCAC
* * * * * * **
106440113 ACGCCGAGGTATTTTCAATTGATT-TTTATTTTTATTTTTTTTCAATTTATGCTTTGCAAAAATC
1 ACGCTGAGGTATTTTCAA---ATTCTGT-TTTTCAATTTATGT---TTT-T-C---AAAAAAATC
* * *
106440177 AACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCAC
54 AACTCATATTGCGAGAGGTGAGTTGAGCCT-TGATCAC
** * * * *
106440215 ATACCGAGGTATTTTCAAAATCTGTTTTACAAATTT-TG-TTTT---AAAAATCAACTCATATTA
1 ACGCTGAGGTATTTTCAAATTCTGTTTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTG
* *
106440275 CGAGAAGTGAGTTGAGCCTTGGCTCAC
65 CGAGAGGTGAGTTGAGCCTT-GATCAC
** * * *
106440302 GTGCTGAGCTATTTTCAATTTCTATTTTT
1 ACGCTGAGGTATTTTCAAATTCTGTTTTT
106440331 AATGTTTAGT
Statistics
Matches: 319, Mismatches: 60, Indels: 49
0.75 0.14 0.11
Matches are distributed among these distances:
87 62 0.19
89 21 0.07
90 2 0.01
91 38 0.12
92 80 0.25
93 8 0.03
94 30 0.09
95 3 0.01
97 4 0.01
98 1 0.00
99 7 0.02
100 6 0.02
102 57 0.18
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.39
Consensus pattern (90 bp):
ACGCTGAGGTATTTTCAAATTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTTGATCAC
Found at i:106440099 original size:183 final size:179
Alignment explanation
Indices: 106439796--106440130 Score: 433
Period size: 183 Copynumber: 1.8 Consensus size: 179
106439786 TGTCTTTCAA
* * * * *
106439796 AAAAAATCAGCTCATATTGCGAGAGGTAAGTTGAACCTCAAGACGCTGAGATGTTTTCCATTTCT
1 AAAAAATCAACTCATATTGCGAGAGGTAAGTTCAACCTCAACACGCTGAGATATTTTCAATTTCT
* * * * *
106439861 GTTCTTCAATTTCTGTGTTTCAAAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCCT-TGA
66 GTTCTTCAATTTATGTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA
*
106439925 CTCACACGCTAAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
131 -TCACACGCCAAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
* *
106439975 AAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGACACGCTGAGATATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTAAGTTCAACCTCA--ACACGCTGAGATATTTTCAATTT
* * *
106440040 CTTTTTTTTTTCAATTTATGT-TTGTC-AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGC
64 C---TGTTCTTCAATTTATGTGTT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
106440103 CTCAGATCACACGCCGAGGTATTTTCAA
125 CTCAGATCACACGCCAAGGTATTTTCAA
106440131 TTGATTTTTA
Statistics
Matches: 132, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
179 36 0.27
181 21 0.16
183 57 0.43
184 18 0.14
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (179 bp):
AAAAAATCAACTCATATTGCGAGAGGTAAGTTCAACCTCAACACGCTGAGATATTTTCAATTTCT
GTTCTTCAATTTATGTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA
TCACACGCCAAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCC
Found at i:106440139 original size:92 final size:89
Alignment explanation
Indices: 106439775--106440390 Score: 336
Period size: 88 Copynumber: 6.7 Consensus size: 89
106439765 CGTTGAGGTA
* * *
106439775 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTAAGTTGAACCTC--A--
1 TTTTCAATTT-TGT-TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
* * * * *
106439836 AGACGCTGAGATGTTTTCCATT-TCTGT
63 ACACGCTGAGGTATTTTCAATTAT-TTT
* * * * *
106439863 TCTTCAATTTCTGTGTTTCAAAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCCT-TGACT
1 TTTTCAATTT-TGT-TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-T
*
106439927 CACACGCTAAGGTATTTTCAA--ATTCTGT
62 CACACGCTGAGGTATTTTCAATTATT-T-T
* * *
106439955 TTTTCAAATTTTGTTTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAG--GA
1 TTTTC-AATTTTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
* *
106440018 CACGCTGAGATATTTTCAATTTCTTTTTT
64 CACGCTGAGGTATTTTCAA--T-TATTTT
*
106440047 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTT-TGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
106440112 CACGCCGAGGTATTTTCAATTGATTTT
64 CACGCTGAGGTATTTTCAATT-ATTTT
** *
106440139 TATTTTTATTTT-TTTTCAATTTATGCTTTGCAAAAATCAACTCATATTACGAGAGGTGAGTTGA
1 T-TTTCAATTTTGTTTTC-A---A--------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * ** * * *
106440203 GCCTCGGGTCACATACCGAGGTATTTTCAA-AATCTGT
53 GCCTCAGATCACACGCTGAGGTATTTTCAATTAT-TTT
* * * ** *
106440240 TTTACAAATTTTGTTTT---AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCAC
1 TTTTC-AATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
** * *
106440302 GTGCTGAGCTATTTTCAATT-TCTAT
65 ACGCTGAGGTATTTTCAATTAT-TTT
* * * ** *
106440327 TTTT-AATGTTTAGTTTT--AAAGAGTCAATTCATATTGCGAGAAATGAGTTAAG-CTCAGGATC
1 TTTTCAAT-TTT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GATC
106440388 ACA
63 ACA
106440391 TGCCGAGTAA
Statistics
Matches: 423, Mismatches: 63, Indels: 84
0.74 0.11 0.15
Matches are distributed among these distances:
85 3 0.01
86 3 0.01
87 70 0.17
88 86 0.20
89 19 0.04
90 3 0.01
91 48 0.11
92 83 0.20
93 14 0.03
94 21 0.05
100 4 0.01
101 8 0.02
102 61 0.14
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (89 bp):
TTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
CGCTGAGGTATTTTCAATTATTTT
Found at i:106440222 original size:102 final size:103
Alignment explanation
Indices: 106440043--106440232 Score: 294
Period size: 102 Copynumber: 1.8 Consensus size: 103
106440033 TCAATTTCTT
**
106440043 TTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAG
1 TTTTTTTTCAATTTATGTTTGTC-AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAG
*
106440108 ATCACACGCCGAGGTATTTTCAATTGATTTTTATTTTTA
65 ATCACACACCGAGGTATTTTCAATTGATTTTTATTTTTA
*
106440147 TTTTTTTTCAATTTATGCTTTG-C-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG
1 TTTTTTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAG
* *
106440210 GTCACATACCGAGGTATTTTCAA
65 ATCACACACCGAGGTATTTTCAA
106440233 AATCTGTTTT
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
102 57 0.72
104 18 0.23
105 4 0.05
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (103 bp):
TTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGA
TCACACACCGAGGTATTTTCAATTGATTTTTATTTTTA
Found at i:106440343 original size:87 final size:86
Alignment explanation
Indices: 106440170--106440397 Score: 235
Period size: 87 Copynumber: 2.6 Consensus size: 86
106440160 TATGCTTTGC
* * *
106440170 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
*
106440235 TCTGTTTTACAAATTTTGTTTT
66 TCTATTTTA-AAATTTTGTTTT
* * * * **
106440257 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
*
106440322 TCTATTTT-TAATGTTTAGTTTT
66 TCTATTTTAAAAT-TTT-GTTTT
* * * * * * *
106440344 AAAGAGTCAATTCATATTGCGAGAAATGAGTTAAG-CTCAGGATCACATGCCGAG
1 AAA-AATCAACTCATATTACGAGAAGTGAGTTGAGCCTC-GGCTCACATACCGAG
106440398 TAAAGAATAA
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
85 3 0.03
86 3 0.03
87 73 0.62
88 38 0.32
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (86 bp):
AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATTTTCAAAA
TCTATTTTAAAATTTTGTTTT
Found at i:106441046 original size:12 final size:12
Alignment explanation
Indices: 106441031--106441055 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
106441021 ACTCCACTAG
106441031 CCACACTTGCTC
1 CCACACTTGCTC
106441043 CCACACTTGCTC
1 CCACACTTGCTC
106441055 C
1 C
106441056 ACCACCTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.52, G:0.08, T:0.24
Consensus pattern (12 bp):
CCACACTTGCTC
Found at i:106441577 original size:22 final size:24
Alignment explanation
Indices: 106441528--106441573 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
106441518 CTTTTTTTGT
106441528 TATTATTATATT-TTTTAATATTA
1 TATTATTATATTCTTTTAATATTA
106441551 TATTATATATATTCTTTTAATAT
1 TATTAT-TATATTCTTTTAATAT
106441574 ATTAGGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATTATATTCTTTTAATATTA
Found at i:106441631 original size:25 final size:25
Alignment explanation
Indices: 106441528--106441733 Score: 85
Period size: 23 Copynumber: 8.6 Consensus size: 25
106441518 CTTTTTTTGT
* *
106441528 TATTAT-TATAT-TTTTTAATATTA
1 TATTATGTATATATATTTAATACTA
* * *
106441551 TATTATATATAT-TCTTT--TAATA
1 TATTATGTATATATATTTAATACTA
* * * *
106441573 TATTAGGTATAT-T-CTAAATTCTA
1 TATTATGTATATATATTTAATACTA
*
106441596 TATTACGTATATATA-TT-ATACTA
1 TATTATGTATATATATTTAATACTA
* *
106441619 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATATTTAATACTA
* * * **
106441644 TATTATTTATATTTTTTTTCTACATGTTA
1 TATTATGTATA--TATATT-TA-ATACTA
*
106441673 TCTTATGTATATAT-TTTAAT--TA
1 TATTATGTATATATATTTAATACTA
* * * *
106441695 TATTATGTATGTATTTTTTACACTA
1 TATTATGTATATATATTTAATACTA
*
106441720 TATTATGTACATAT
1 TATTATGTATATAT
106441734 TTTTTTTATA
Statistics
Matches: 140, Mismatches: 29, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
21 1 0.01
22 29 0.21
23 41 0.29
24 15 0.11
25 31 0.22
26 2 0.01
27 6 0.04
28 2 0.01
29 13 0.09
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (25 bp):
TATTATGTATATATATTTAATACTA
Found at i:106441653 original size:29 final size:28
Alignment explanation
Indices: 106441620--106441725 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 28
106441610 ATTATACTAT
106441620 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATACTATATTA
* ** *
106441649 TTTA--TAT-TTTTTTTCTAC-ATGTTA
1 TTTATGTATATATTTTAATACTATATTA
106441673 TCTTATGTATATATTTTAAT--TATATTA
1 T-TTATGTATATATTTTAATACTATATTA
* *
106441700 TGTATGTAT-T-TTTT-ACACTATATTA
1 TTTATGTATATATTTTAATACTATATTA
106441725 T
1 T
106441726 GTACATATTT
Statistics
Matches: 60, Mismatches: 10, Indels: 18
0.68 0.11 0.20
Matches are distributed among these distances:
23 1 0.02
24 10 0.17
25 18 0.30
26 9 0.15
27 12 0.20
28 6 0.10
29 4 0.07
ACGTcount: A:0.29, C:0.07, G:0.05, T:0.59
Consensus pattern (28 bp):
TTTATGTATATATTTTAATACTATATTA
Found at i:106441695 original size:22 final size:22
Alignment explanation
Indices: 106441670--106441736 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 22
106441660 TTTCTACATG
*
106441670 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
106441692 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
106441717 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
106441737 TTTTATATCT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 8 0.22
25 12 0.32
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:106441828 original size:25 final size:24
Alignment explanation
Indices: 106441800--106441855 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
106441790 GTTATATTTT
*
106441800 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
106441825 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
106441848 CACTATTA
1 CACTATTA
106441856 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:106442693 original size:3 final size:3
Alignment explanation
Indices: 106442685--106442761 Score: 61
Period size: 3 Copynumber: 26.0 Consensus size: 3
106442675 TGGTTTCGAC
* * *
106442685 AAT AAT AAT AA- AAT AAGG AAT AAT AAT AAC AAA AAT AAT -AT AAAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * *
106442730 AAT AA- AAA AAC AAT AAT AGT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
106442762 TGATAATACT
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
2 6 0.10
3 50 0.83
4 4 0.07
ACGTcount: A:0.69, C:0.03, G:0.04, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:106442730 original size:21 final size:20
Alignment explanation
Indices: 106442706--106442744 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
106442696 AATAAGGAAT
*
106442706 AATAATAACAAAAATAATATA
1 AATAATAA-AAAAACAATATA
106442727 AATAATAAAAAAACAATA
1 AATAATAAAAAAACAATA
106442745 ATAGTAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (20 bp):
AATAATAAAAAAACAATATA
Found at i:106442753 original size:23 final size:24
Alignment explanation
Indices: 106442703--106442760 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
106442693 TAAAATAAGG
106442703 AATAATAATAACAAAAATAATATA
1 AATAATAATAACAAAAATAATATA
106442727 AATAATAA-AA-AAACAATAATAGT-
1 AATAATAATAACAAA-AATAATA-TA
106442750 AATAATAATAA
1 AATAATAATAA
106442761 TTGATAATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
22 3 0.10
23 17 0.55
24 11 0.35
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (24 bp):
AATAATAATAACAAAAATAATATA
Found at i:106443099 original size:10 final size:10
Alignment explanation
Indices: 106443084--106443143 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
106443074 TAATTTTAGG
106443084 ATTTAT-TTT
1 ATTTATCTTT
106443093 CATTTATCTTT
1 -ATTTATCTTT
106443104 ATTTATCTTT
1 ATTTATCTTT
*
106443114 AATTATCTTT
1 ATTTATCTTT
*
106443124 GTTTAT-TTGT
1 ATTTATCTT-T
106443134 ATTTATCTTT
1 ATTTATCTTT
106443144 TAGAATTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 2 0.05
10 36 0.84
11 5 0.12
ACGTcount: A:0.20, C:0.08, G:0.03, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:106444134 original size:12 final size:12
Alignment explanation
Indices: 106444117--106444170 Score: 57
Period size: 12 Copynumber: 5.0 Consensus size: 12
106444107 GACACATCAA
*
106444117 TAATAATGATAG
1 TAATAATAATAG
106444129 TAATAATAATAG
1 TAATAATAATAG
106444141 ---TAATAATAG
1 TAATAATAATAG
106444150 -AA-AATAATAG
1 TAATAATAATAG
106444160 TAATAA-AATAG
1 TAATAATAATAG
106444171 CAAAATAACT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
9 9 0.24
10 8 0.22
11 7 0.19
12 13 0.35
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (12 bp):
TAATAATAATAG
Found at i:106444144 original size:9 final size:9
Alignment explanation
Indices: 106444132--106444165 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
106444122 ATGATAGTAA
106444132 TAATAATAG
1 TAATAATAG
106444141 TAATAATAG
1 TAATAATAG
*
106444150 AAAATAATAG
1 -TAATAATAG
106444160 TAATAA
1 TAATAA
106444166 AATAGCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (9 bp):
TAATAATAG
Found at i:106444158 original size:22 final size:22
Alignment explanation
Indices: 106444130--106444178 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
106444120 TAATGATAGT
*
106444130 AATAATAATAGTAATAATAG-AA
1 AATAATAATAATAA-AATAGCAA
*
106444152 AATAATAGTAATAAAATAGCAA
1 AATAATAATAATAAAATAGCAA
106444174 AATAA
1 AATAA
106444179 CTAAAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.24
Consensus pattern (22 bp):
AATAATAATAATAAAATAGCAA
Found at i:106448564 original size:11 final size:11
Alignment explanation
Indices: 106448550--106448620 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
106448540 ATAGCTTAAA
*
106448550 AAAATTAATAT
1 AAAATTAAAAT
106448561 AAAATCTAAAAT
1 AAAAT-TAAAAT
*
106448573 AATAA-T-AATT
1 AA-AATTAAAAT
*
106448583 AAAAAT-AAAT
1 AAAATTAAAAT
106448593 AAAATTAAAAT
1 AAAATTAAAAT
*
106448604 AAACTTAAAAT
1 AAAATTAAAAT
*
106448615 AGAATT
1 AAAATT
106448621 TCCTATTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 2 0.04
10 14 0.29
11 24 0.49
12 7 0.14
13 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:106448571 original size:21 final size:20
Alignment explanation
Indices: 106448546--106448606 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 20
106448536 AAAAATAGCT
*
106448546 TAAAAAAATTAATATAAAATC
1 TAAAAAAATTAATATAAAA-A
*
106448567 TAAAATAA-TAATAATTAAAAA
1 TAAAAAAATTAAT-A-TAAAAA
*
106448588 TAAATAAAATTAAAATAAA
1 TAAA-AAAATTAATATAAA
106448607 CTTAAAATAG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
20 4 0.12
21 16 0.50
22 9 0.28
23 3 0.09
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (20 bp):
TAAAAAAATTAATATAAAAA
Found at i:106448589 original size:16 final size:16
Alignment explanation
Indices: 106448549--106448606 Score: 59
Period size: 15 Copynumber: 3.6 Consensus size: 16
106448539 AATAGCTTAA
106448549 AAAAATTAATATAAAATCT
1 AAAAA-TAA-ATAAAAT-T
106448568 -AAAAT-AATAATAATT
1 AAAAATAAATAA-AATT
106448583 AAAAATAAATAAAATT
1 AAAAATAAATAAAATT
106448599 -AAAATAAA
1 AAAAATAAA
106448607 CTTAAAATAG
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
15 13 0.36
16 13 0.36
17 6 0.17
18 4 0.11
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAAATAAATAAAATT
Found at i:106449577 original size:15 final size:16
Alignment explanation
Indices: 106449549--106449587 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
106449539 ATATATAAAT
*
106449549 AAAGTAAAATGAATA-A
1 AAAG-AAAAAGAATAGA
106449565 AAAGAAAAAGAATAGA
1 AAAGAAAAAGAATAGA
106449581 AAAGAAA
1 AAAGAAA
106449588 GAAAGGATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.10
Consensus pattern (16 bp):
AAAGAAAAAGAATAGA
Found at i:106449639 original size:15 final size:15
Alignment explanation
Indices: 106449619--106449654 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
106449609 GAGCAGGGGA
*
106449619 AAGAAAGAAGGAAGG
1 AAGAAAGAAAGAAGG
106449634 AAGAAAGAAAGAAGG
1 AAGAAAGAAAGAAGG
106449649 AA-AAAG
1 AAGAAAG
106449655 GGGAAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (15 bp):
AAGAAAGAAAGAAGG
Found at i:106457339 original size:61 final size:61
Alignment explanation
Indices: 106457236--106457354 Score: 195
Period size: 61 Copynumber: 2.0 Consensus size: 61
106457226 TCATGTAGGA
* *
106457236 GAGAAGTTTGAAAAACTAGATTGACAACGATCAAAGATACGTCAATGATTAGAATCTAGTT
1 GAGAAGTTTGAAAAACTAGATCGACAACGATCAAAGACACGTCAATGATTAGAATCTAGTT
*
106457297 GAGAAGTTTGAAAAGCTAGATCGACAACGATCAGAAG-CACGTCAATGATTAGAATCTA
1 GAGAAGTTTGAAAAACTAGATCGACAACGATCA-AAGACACGTCAATGATTAGAATCTA
106457355 TTTGGAAAAC
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
61 51 0.94
62 3 0.06
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.24
Consensus pattern (61 bp):
GAGAAGTTTGAAAAACTAGATCGACAACGATCAAAGACACGTCAATGATTAGAATCTAGTT
Found at i:106459622 original size:12 final size:12
Alignment explanation
Indices: 106459605--106459648 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
106459595 TCCAACATGT
106459605 ACTAAAAATGAA
1 ACTAAAAATGAA
**
106459617 ACTAAAATATGTT
1 ACTAAAA-ATGAA
*
106459630 ACTAAGAATGAA
1 ACTAAAAATGAA
106459642 ACTAAAA
1 ACTAAAA
106459649 TATATTACTT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
12 16 0.64
13 9 0.36
ACGTcount: A:0.59, C:0.09, G:0.09, T:0.23
Consensus pattern (12 bp):
ACTAAAAATGAA
Found at i:106459634 original size:25 final size:25
Alignment explanation
Indices: 106459604--106459657 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
106459594 ATCCAACATG
*
106459604 TACTAAAAATGAAACTAAAATATGT
1 TACTAAAAATGAAACTAAAATATAT
*
106459629 TACTAAGAATGAAACTAAAATATAT
1 TACTAAAAATGAAACTAAAATATAT
106459654 TACT
1 TACT
106459658 TTTTACACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.30
Consensus pattern (25 bp):
TACTAAAAATGAAACTAAAATATAT
Found at i:106460227 original size:66 final size:66
Alignment explanation
Indices: 106460147--106460275 Score: 224
Period size: 66 Copynumber: 2.0 Consensus size: 66
106460137 TGAAAGGCAA
*
106460147 AAATGTATTCTTTCATAAGTTGGCATACATTCCACAATAATAAAAGTATAA-AAGAATAAAATAC
1 AAATGTATTCTTTCAAAAGTTGGCATACATTCCACAATAATAAAAGTA-AAGAAGAATAAAATAC
106460211 AC
65 AC
*
106460213 AAATGTATTCTTTCAAAAGTTGGCATACGTTCCACAATAATAAAAGTAAAGAAGAATAAAATA
1 AAATGTATTCTTTCAAAAGTTGGCATACATTCCACAATAATAAAAGTAAAGAAGAATAAAATA
106460276 TATAATCAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
65 2 0.03
66 58 0.97
ACGTcount: A:0.49, C:0.12, G:0.11, T:0.28
Consensus pattern (66 bp):
AAATGTATTCTTTCAAAAGTTGGCATACATTCCACAATAATAAAAGTAAAGAAGAATAAAATACA
C
Found at i:106460630 original size:12 final size:13
Alignment explanation
Indices: 106460606--106460643 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
106460596 AAATTTCCAA
*
106460606 ATTTTAATA-TTT
1 ATTTTTATATTTT
106460618 ATTTTTAT-TTTT
1 ATTTTTATATTTT
106460630 ATTTTTATATTTT
1 ATTTTTATATTTT
106460643 A
1 A
106460644 AGGGGTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 18 0.78
13 5 0.22
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
ATTTTTATATTTT
Found at i:106462341 original size:14 final size:14
Alignment explanation
Indices: 106462322--106462349 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
106462312 CTGTGAATGG
106462322 TTTTTACTTTTAGT
1 TTTTTACTTTTAGT
106462336 TTTTTACTTTTAGT
1 TTTTTACTTTTAGT
106462350 ATTGACAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (14 bp):
TTTTTACTTTTAGT
Found at i:106463152 original size:35 final size:35
Alignment explanation
Indices: 106463085--106463152 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
106463075 TTAATGCTTA
*
106463085 TGAATTAAAGAGCTATTAAAAACTCAAATTAATGTC
1 TGAATTAAAGAGCCATT-AAAACTCAAATTAATGTC
*
106463121 TGAATTAAAGAAGCCATT-AAACTCAATTTAAT
1 TGAATTAAAG-AGCCATTAAAACTCAAATTAAT
106463153 ATCTATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
35 13 0.45
36 10 0.34
37 6 0.21
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (35 bp):
TGAATTAAAGAGCCATTAAAACTCAAATTAATGTC
Found at i:106469408 original size:20 final size:21
Alignment explanation
Indices: 106469381--106469428 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
106469371 ATTCTCTCCC
*
106469381 CTCT-TTTTGCCTTCTTTCTT
1 CTCTCTTTTGCCTTCGTTCTT
**
106469401 -TCTCTTTTGTTTTCGTTCTT
1 CTCTCTTTTGCCTTCGTTCTT
106469421 CTCTCTTT
1 CTCTCTTT
106469429 CTCCGTTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 3 0.13
20 13 0.57
21 7 0.30
ACGTcount: A:0.00, C:0.27, G:0.06, T:0.67
Consensus pattern (21 bp):
CTCTCTTTTGCCTTCGTTCTT
Found at i:106469904 original size:17 final size:17
Alignment explanation
Indices: 106469882--106469914 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
106469872 CTCTACTCAT
106469882 TCAAATATTATGCTTTG
1 TCAAATATTATGCTTTG
106469899 TCAAATATTATGCTTT
1 TCAAATATTATGCTTT
106469915 TTTAAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.48
Consensus pattern (17 bp):
TCAAATATTATGCTTTG
Found at i:106474560 original size:38 final size:39
Alignment explanation
Indices: 106474468--106474562 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 39
106474458 ACAGTATCTT
106474468 TTGGTGTGTAGGGTTAGATGGGTCGATTATATCTCCATAC
1 TTGGTGTGTAGGGTTAGATGGGTCGATTATATCTCCA-AC
* *
106474508 TTGGTGTGTAGGGTTAGGTGGGTCGATTTTATC-CTC-AC
1 TTGGTGTGTAGGGTTAGATGGGTCGATTATATCTC-CAAC
*
106474546 TTGGTGTGTTGGGTTAG
1 TTGGTGTGTAGGGTTAG
106474563 TCGGAGGCGG
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
38 18 0.35
39 1 0.02
40 32 0.63
ACGTcount: A:0.15, C:0.11, G:0.35, T:0.40
Consensus pattern (39 bp):
TTGGTGTGTAGGGTTAGATGGGTCGATTATATCTCCAAC
Found at i:106482389 original size:38 final size:39
Alignment explanation
Indices: 106482298--106482391 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 39
106482288 CAGTATATTT
** *
106482298 TGGTGTGTAGGGTTGGATGGGTTGATTATATCCCCATACT
1 TGGTGTGTAGGGTTGGATGGGTCAATTATATCCCCA-ACA
*
106482338 TGGTGTGTAGGGTTCGG-TGGGTCAATTCTATCCCC-ACA
1 TGGTGTGTAGGGTT-GGATGGGTCAATTATATCCCCAACA
*
106482376 TGGTGTGTTGGGTTGG
1 TGGTGTGTAGGGTTGG
106482392 TCGGAGATGG
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
37 2 0.04
38 15 0.31
40 29 0.60
41 2 0.04
ACGTcount: A:0.14, C:0.14, G:0.36, T:0.36
Consensus pattern (39 bp):
TGGTGTGTAGGGTTGGATGGGTCAATTATATCCCCAACA
Found at i:106483220 original size:12 final size:12
Alignment explanation
Indices: 106483203--106483233 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
106483193 GAAGCCGGGG
106483203 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
106483215 AGAAAAAGGGAA
1 AGAAAAAGAGAA
106483227 AGAAAAA
1 AGAAAAA
106483234 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:106484162 original size:23 final size:23
Alignment explanation
Indices: 106484102--106484189 Score: 101
Period size: 23 Copynumber: 4.0 Consensus size: 23
106484092 GCTTTGCCGA
* * *
106484102 TCAGGCACTTTATATGTCGTATA
1 TCAGGCACCTTATGTGTCGTATT
*
106484125 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
*
106484148 TCAGGCACCTCATGTGTC--ATT
1 TCAGGCACCTTATGTGTCGTATT
*
106484169 TCTGGCA-CTTATGTGTCGTAT
1 TCAGGCACCTTATGTGTCGTAT
106484190 GCTGATCAGG
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
20 9 0.16
21 9 0.16
22 2 0.04
23 37 0.65
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.40
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:106486198 original size:23 final size:23
Alignment explanation
Indices: 106486168--106486214 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
106486158 TACTTTTTCA
106486168 TAAACACTTTTCAAAATAAATTT
1 TAAACACTTTTCAAAATAAATTT
106486191 TAAACACTTTTCAAAATAAATTT
1 TAAACACTTTTCAAAATAAATTT
106486214 T
1 T
106486215 CATCCATAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAACACTTTTCAAAATAAATTT
Found at i:106489501 original size:15 final size:16
Alignment explanation
Indices: 106489483--106489515 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
106489473 AATATATTTT
106489483 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
106489498 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
106489515 T
1 T
106489516 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:106489601 original size:22 final size:21
Alignment explanation
Indices: 106489565--106489646 Score: 62
Period size: 22 Copynumber: 3.8 Consensus size: 21
106489555 TTAAGAATTA
* *
106489565 TTTTAGTA-TTATTTTTATTT
1 TTTTAATATTTATTTTTATGT
106489585 GTTTTAATATTTATTTTTATGT
1 -TTTTAATATTTATTTTTATGT
*
106489607 TTTTAAATATATTTGATTTATTATAT
1 TTTT--A-ATATTT-ATTT-TTATGT
106489633 TTTTAA-ATTT-TTTT
1 TTTTAATATTTATTTT
106489647 ATTTAATGAA
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
19 1 0.02
20 3 0.06
21 11 0.21
22 15 0.29
23 2 0.04
24 7 0.13
25 4 0.08
26 9 0.17
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.70
Consensus pattern (21 bp):
TTTTAATATTTATTTTTATGT
Found at i:106489619 original size:20 final size:22
Alignment explanation
Indices: 106489565--106489620 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
106489555 TTAAGAATTA
* *
106489565 TTTTAGTAT-TATTTTTATTTG
1 TTTTAATATATATTTTTATGTG
*
106489586 TTTTAATATTTATTTTTATGT-
1 TTTTAATATATATTTTTATGTG
106489607 TTTTAA-ATATATTT
1 TTTTAATATATATTT
106489621 GATTTATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.23
21 14 0.45
22 10 0.32
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (22 bp):
TTTTAATATATATTTTTATGTG
Found at i:106489637 original size:26 final size:24
Alignment explanation
Indices: 106489591--106489650 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
106489581 ATTTGTTTTA
*
106489591 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
106489615 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
106489641 TTTTTTATTT
1 ATATTTATTT
106489651 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:106490786 original size:11 final size:11
Alignment explanation
Indices: 106490770--106490794 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
106490760 AGGTTGGCTG
106490770 ACAAAAACAAA
1 ACAAAAACAAA
106490781 ACAAAAACAAA
1 ACAAAAACAAA
106490792 ACA
1 ACA
106490795 TTTCAATGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (11 bp):
ACAAAAACAAA
Found at i:106491601 original size:23 final size:22
Alignment explanation
Indices: 106491567--106491615 Score: 89
Period size: 23 Copynumber: 2.2 Consensus size: 22
106491557 ATTACATTTA
106491567 TACATTATACATTATACAACCT
1 TACATTATACATTATACAACCT
106491589 TACATTTATACATTATACAACCT
1 TACA-TTATACATTATACAACCT
106491612 TACA
1 TACA
106491616 AAAAATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (22 bp):
TACATTATACATTATACAACCT
Found at i:106498136 original size:5 final size:5
Alignment explanation
Indices: 106498126--106498154 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
106498116 AAGGTTGTGA
106498126 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
106498155 AACACACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:106499608 original size:19 final size:21
Alignment explanation
Indices: 106499567--106499608 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
106499557 TAATGTTAAA
*
106499567 ATATATACATAATATATACAT
1 ATATATACATAATATAGACAT
*
106499588 ATATATATATAATA-AGA-AT
1 ATATATACATAATATAGACAT
106499607 AT
1 AT
106499609 TGAAAAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.21
20 2 0.11
21 13 0.68
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (21 bp):
ATATATACATAATATAGACAT
Found at i:106500184 original size:18 final size:20
Alignment explanation
Indices: 106500150--106500188 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
106500140 AAATATATAC
106500150 ATAATATATACATATTAAAA
1 ATAATATATACATATTAAAA
106500170 ATAATA-ATA-ATATTAAAA
1 ATAATATATACATATTAAAA
106500188 A
1 A
106500189 AAACAATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.53
19 3 0.16
20 6 0.32
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAATATATACATATTAAAA
Found at i:106502528 original size:19 final size:20
Alignment explanation
Indices: 106502504--106502542 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
106502494 CATTCAACTA
106502504 TCAA-TTCTTTTAATTTAGT
1 TCAATTTCTTTTAATTTAGT
*
106502523 TCAATTTTTTTTAATTTAGT
1 TCAATTTCTTTTAATTTAGT
106502543 CACTCAACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.26, C:0.08, G:0.05, T:0.62
Consensus pattern (20 bp):
TCAATTTCTTTTAATTTAGT
Found at i:106505590 original size:17 final size:16
Alignment explanation
Indices: 106505556--106505610 Score: 50
Period size: 15 Copynumber: 3.8 Consensus size: 16
106505546 GAAAAAAAAG
106505556 AAAT-ATAATAATAGT
1 AAATAATAATAATAGT
106505571 -AATAATAAT-AT--T
1 AAATAATAATAATAGT
*
106505583 AAATTAATAAAAATAGT
1 AAA-TAATAATAATAGT
106505600 AAA-AATAATAA
1 AAATAATAATAA
106505611 AAAAGGACTA
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
12 1 0.03
13 2 0.06
14 11 0.34
15 14 0.44
17 4 0.12
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (16 bp):
AAATAATAATAATAGT
Found at i:106510720 original size:29 final size:28
Alignment explanation
Indices: 106510661--106510727 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
106510651 ATTTAAAATT
* * * *
106510661 AAAAAATATATAAATTATTAAAATTTAA
1 AAAAAATATATAAAATATAAAAAATGAA
106510689 AAAAGAATATATAAAATATAAAAAATGGAA
1 AAAA-AATATATAAAATATAAAAAAT-GAA
106510719 AAAAAATAT
1 AAAAAATAT
106510728 TATTATGGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.12
29 23 0.70
30 6 0.18
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (28 bp):
AAAAAATATATAAAATATAAAAAATGAA
Found at i:106511656 original size:18 final size:18
Alignment explanation
Indices: 106511633--106511672 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
106511623 GAGGTTAATA
106511633 TAGATCGAAGATGAAGAT
1 TAGATCGAAGATGAAGAT
106511651 TAGATCGAAGATGAAGAT
1 TAGATCGAAGATGAAGAT
106511669 TAGA
1 TAGA
106511673 CTATGCTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.28, T:0.23
Consensus pattern (18 bp):
TAGATCGAAGATGAAGAT
Found at i:106515934 original size:13 final size:13
Alignment explanation
Indices: 106515916--106515940 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
106515906 GATTCATAAT
106515916 AAAATAAAAAATA
1 AAAATAAAAAATA
106515929 AAAATAAAAAAT
1 AAAATAAAAAAT
106515941 GAAATGAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATA
Found at i:106515950 original size:23 final size:25
Alignment explanation
Indices: 106515924--106515977 Score: 78
Period size: 23 Copynumber: 2.3 Consensus size: 25
106515914 ATAAAATAAA
106515924 AAATAAAAAT-AAAAAATGAAAT-G
1 AAATAAAAATAAAAAAATGAAATGG
*
106515947 AAAT-GAAATAAAAAAATGAAATGG
1 AAATAAAAATAAAAAAATGAAATGG
106515971 AAATAAA
1 AAATAAA
106515978 CAATCAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 4 0.15
23 16 0.62
24 5 0.19
25 1 0.04
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (25 bp):
AAATAAAAATAAAAAAATGAAATGG
Found at i:106515969 original size:18 final size:19
Alignment explanation
Indices: 106515942--106515977 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
106515932 ATAAAAAATG
106515942 AAATGAAAT-GAAATAAAA
1 AAATGAAATGGAAATAAAA
106515960 AAATGAAATGGAAATAAA
1 AAATGAAATGGAAATAAA
106515978 CAATCAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (19 bp):
AAATGAAATGGAAATAAAA
Found at i:106517093 original size:44 final size:44
Alignment explanation
Indices: 106517040--106517167 Score: 141
Period size: 44 Copynumber: 2.9 Consensus size: 44
106517030 GGTTTGCTAT
* * * *
106517040 CTTCGATCTATTCCACTGTAACTTCAAGGAGATAAGA-TCTATAA
1 CTTCAATCTACTCCACTGTAACTTTAAGGAGATAAGATTC-ACAA
* * * **
106517084 CTTCAATCTACTCCTCTGCAACTTTAAGGAGATAAGATTCGCGG
1 CTTCAATCTACTCCACTGTAACTTTAAGGAGATAAGATTCACAA
* *
106517128 CTTCAATCTACTCCACTGTAACTTTAGGGAGACAAGATTC
1 CTTCAATCTACTCCACTGTAACTTTAAGGAGATAAGATTC
106517168 TCCATGGTGA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
44 68 0.97
45 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGTAACTTTAAGGAGATAAGATTCACAA
Found at i:106517272 original size:183 final size:182
Alignment explanation
Indices: 106516958--106517386 Score: 653
Period size: 183 Copynumber: 2.4 Consensus size: 182
106516948 TCAACCTTCC
* *
106516958 CCACTGCAACTTTAGGGAGACAAGATT-TGCCATGGTGATTTCAATTCGTCCTACTGCATCTTCA
1 CCACTGCAACTTTAGGGAGACAAGATTCT-CCATGGTGATTTCAATCCGTCCCACTGCATCTTCA
*
106517022 GGGAATAAGGTTTGCTATCTTCGATCTATTCCACTGTAACTTCAAGGAGATAAGATCTATAACTT
65 GGGAATAAGGTTTGCTATCTTCGATCTATTCCACTGCAACTTCAAGGAGATAAGATCTATAACTT
* * *
106517087 CAATCTACTCCTCTGCAACTTTAAGGAGATAAGATTCGCGGCTTCAATCTACT
130 CAATCTACTCCTCTACAACTTCAAGGAGATAAGATTCACGGCTTCAATCTACT
* *
106517140 CCACTGTAACTTTAGGGAGACAAGATTCTCCATGGTGATTTCAATCCATCCCACTGCATCTTCAG
1 CCACTGCAACTTTAGGGAGACAAGATTCTCCATGGTGATTTCAATCCGTCCCACTGCATCTTCA-
* * *
106517205 GGGAATATGGTTTGCTATCTTCGATCTATTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTT
65 GGGAATAAGGTTTGCTATCTTCGATCTATTCCACTGCAACTTCAAGGAGATAAGATCTATAACTT
* ** *
106517270 CAATCTACTCTTCTACAACTTCGGGGAGATAAGATTCACGGCTTCAATCTGCT
130 CAATCTACTCCTCTACAACTTCAAGGAGATAAGATTCACGGCTTCAATCTACT
* * * * *
106517323 CCACTACAATTTTAGAGAGACAAGATTCGCTATGGTGATTTCAATCCGTCCCACTGCATCTTCA
1 CCACTGCAACTTTAGGGAGACAAGATTCTCCATGGTGATTTCAATCCGTCCCACTGCATCTTCA
106517387 AGGGTGTAGG
Statistics
Matches: 223, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
182 58 0.26
183 165 0.74
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (182 bp):
CCACTGCAACTTTAGGGAGACAAGATTCTCCATGGTGATTTCAATCCGTCCCACTGCATCTTCAG
GGAATAAGGTTTGCTATCTTCGATCTATTCCACTGCAACTTCAAGGAGATAAGATCTATAACTTC
AATCTACTCCTCTACAACTTCAAGGAGATAAGATTCACGGCTTCAATCTACT
Found at i:106525174 original size:25 final size:25
Alignment explanation
Indices: 106525129--106525176 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
106525119 TATAAAAGTG
*
106525129 TAAAATAAATAATATGTAAATAACC
1 TAAAATAAATAATATGAAAATAACC
106525154 TAAAATAAATAATAAT-AAAATAA
1 TAAAATAAATAAT-ATGAAAATAA
106525177 TTTGAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (25 bp):
TAAAATAAATAATATGAAAATAACC
Found at i:106525225 original size:25 final size:24
Alignment explanation
Indices: 106525197--106525264 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
106525187 GTAAAAGGGG
106525197 TTTAAAATAAAGTATATAAAAT-AA
1 TTTAAAAT-AAGTATATAAAATCAA
*
106525221 TTTTAAAATAAGTAATATATAAGTCAA
1 -TTTAAAATAAGT-ATATA-AAATCAA
106525248 TTTAAAATAA-TATATAA
1 TTTAAAATAAGTATATAA
106525265 CAAGTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
23 1 0.03
24 9 0.23
25 14 0.36
26 13 0.33
27 2 0.05
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.37
Consensus pattern (24 bp):
TTTAAAATAAGTATATAAAATCAA
Found at i:106525249 original size:27 final size:23
Alignment explanation
Indices: 106525197--106525277 Score: 76
Period size: 25 Copynumber: 3.4 Consensus size: 23
106525187 GTAAAAGGGG
106525197 TTTAAAATAAAGTATATAAAATAA
1 TTTAAAAT-AAGTATATAAAATAA
*
106525221 TTTTAAAATAAGTAATATATAAGTCAA
1 -TTTAAAATAAGT-ATATA-AAAT-AA
* *
106525248 TTTAAAATAA-TATATAACA-AG
1 TTTAAAATAAGTATATAAAATAA
106525269 TTTAAAATA
1 TTTAAAATA
106525278 TATAATATGT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
21 10 0.20
23 1 0.02
24 9 0.18
25 14 0.29
26 13 0.27
27 2 0.04
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (23 bp):
TTTAAAATAAGTATATAAAATAA
Found at i:106525280 original size:20 final size:21
Alignment explanation
Indices: 106525233--106525281 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
106525223 TTAAAATAAG
106525233 TAATATATAAGTCAATTTAAAA
1 TAATATATAAG-CAATTTAAAA
106525255 TAATATATAA-CAAGTTTAAAA
1 TAATATATAAGCAA-TTTAAAA
106525276 T-ATATA
1 TAATATA
106525282 ATATGTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.31
21 8 0.31
22 10 0.38
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (21 bp):
TAATATATAAGCAATTTAAAA
Found at i:106525282 original size:25 final size:25
Alignment explanation
Indices: 106525254--106525312 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
106525244 TCAATTTAAA
* *
106525254 ATAATATATAACAAG-TTTAAAATAT
1 ATAATATATAA-AAGATTAAAAATAG
*
106525279 ATAATATGTAAAAGAATTAAAAATAG
1 ATAATATATAAAAG-ATTAAAAATAG
106525305 ATAATATA
1 ATAATATA
106525313 AATATATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 3 0.11
25 10 0.36
26 15 0.54
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (25 bp):
ATAATATATAAAAGATTAAAAATAG
Found at i:106525427 original size:25 final size:24
Alignment explanation
Indices: 106525360--106525429 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
106525350 AAAAATAGTT
* *
106525360 ATTTGAAATACATAATATACAATA
1 ATTTGAAATAAATAATATAAAATA
* * *
106525384 ACTTAAGAATAAACAATATAAAATA
1 ATTTGA-AATAAATAATATAAAATA
106525409 ATTTGAAATAAATATATATAA
1 ATTTGAAATAAATA-ATATAA
106525430 CAAAACAGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
24 11 0.31
25 25 0.69
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (24 bp):
ATTTGAAATAAATAATATAAAATA
Found at i:106526441 original size:18 final size:19
Alignment explanation
Indices: 106526415--106526458 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
106526405 TAAAATAAAA
*
106526415 AAATAAAAAAATGAAAT-G
1 AAATAAAAAAAGGAAATGG
*
106526433 AAATGAAAAAAGGAAATGG
1 AAATAAAAAAAGGAAATGG
106526452 AAATAAA
1 AAATAAA
106526459 CAGTCAACCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (19 bp):
AAATAAAAAAAGGAAATGG
Found at i:106534702 original size:26 final size:26
Alignment explanation
Indices: 106534673--106534780 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
106534663 TGATACAAAT
106534673 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
106534699 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106534725 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106534751 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
106534777 TGAT
1 TGAT
106534781 GGGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:106536283 original size:26 final size:26
Alignment explanation
Indices: 106536254--106536306 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
106536244 TTTACAGTTT
106536254 TACCCCTAGGAGATAAATT-ACCAAAA
1 TACCCCTAGG-GATAAATTGACCAAAA
* *
106536280 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCAAAA
106536306 T
1 T
106536307 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCAAAA
Found at i:106539804 original size:5 final size:5
Alignment explanation
Indices: 106539785--106539858 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
106539775 ACAACCCAAT
* * * *
106539785 TTTTA TTTT- TATTTA TTTTA TTTTA GTTTA GTTTA GTTTA GTTTA TTTT-
1 TTTTA TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
106539834 TATTTA TTTTA -TTTA TTATTA TTTT
1 T-TTTA TTTTA TTTTA TT-TTA TTTT
106539859 CAGATATTAA
Statistics
Matches: 61, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
4 6 0.10
5 48 0.79
6 7 0.11
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:106540791 original size:99 final size:100
Alignment explanation
Indices: 106540607--106540801 Score: 261
Period size: 99 Copynumber: 2.0 Consensus size: 100
106540597 CTTAAGAATG
* *
106540607 TGTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGTTGTCATCACTCTTCGCGTCAAAAGGTTCGA
1 TGTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGCTGTCATCACTCTTCGCGTCAAAAGGTTCAA
* ** *
106540672 CATGTTCTTAGGAAAAATAAA-AAAATAAAAAGTA
66 CATATTCACAGCAAAAATAAATAAAATAAAAAGTA
* *
106540706 TGTTGGGCTGAGTAATCTGGGTTTGGTGCTT-GGCTGTCATCACTCTTCGCGTCAAAAGGTTCAA
1 TGTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGCTGTCATCACTCTTCGCGTCAAAAGGTTCAA
* *
106540770 CATATATACACA-CATACATAAATAAAATAAAA
66 CATAT-T-CACAGCAAAAATAAATAAAATAAAA
106540802 TAAAAAGTAA
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
98 35 0.42
99 37 0.45
100 11 0.13
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (100 bp):
TGTTGGGCTGAGTAACCGGGGTTTGGTGCTTGGGCTGTCATCACTCTTCGCGTCAAAAGGTTCAA
CATATTCACAGCAAAAATAAATAAAATAAAAAGTA
Found at i:106541479 original size:10 final size:10
Alignment explanation
Indices: 106541464--106541491 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
106541454 AGGATTTGAT
106541464 TTTAATTATC
1 TTTAATTATC
106541474 TTTAATTATC
1 TTTAATTATC
106541484 TTTAATTA
1 TTTAATTA
106541492 AATGTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTAATTATC
Found at i:106546452 original size:13 final size:14
Alignment explanation
Indices: 106546431--106546460 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
106546421 AGAAAAAAAA
106546431 AAGAGAAGAAGAAG
1 AAGAGAAGAAGAAG
106546445 AAGA-AAGAAGAAG
1 AAGAGAAGAAGAAG
106546458 AAG
1 AAG
106546461 GCTAGTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (14 bp):
AAGAGAAGAAGAAG
Found at i:106547329 original size:300 final size:302
Alignment explanation
Indices: 106546999--106547671 Score: 1287
Period size: 300 Copynumber: 2.2 Consensus size: 302
106546989 ATTTATATTA
*
106546999 TTATTTATTTATTTGATAATTTTTATTGATTGATTAAAATTTTGATTAAATTTGTTGTTATATAA
1 TTATTTATTTATTTGATAATTTTTATTGATTGATTAAAATTTTGATTAAATTTGTTATTATATAA
106547064 TTTTATAGGTTATGTGAAAGAAACTACTTAGGTATGTTTCAATTTCAATTATTTTTAATTCATAT
66 TTTTATAGGTTATGTGAAAGAAACTACTTAGGTATGTTTCAATTTCAATTATTTTTAATTCATAT
106547129 GTTTTTTAATCTTTAGATAATTTATATTTA-TTTTTATTGTATGTAAATGATGGGGAATTATAAA
131 GTTTTTTAATCTTTAGATAATTTATATTTATTTTTTATTGTATGTAAATGATGGGGAATTATAAA
*
106547193 ATTAATTTTTAAAATGGTTGTGCAATAAAATTATTTTTTAGTAGTGTATTAGTGTATTGTGATTT
196 ATTAATTTTTAAAATGGTTGTGCAATAAAATTATTTTTTAATAGTGTATTAGTGTATTGTGATTT
106547258 TTTTGATAATGTATTTT-AAAAAATGATTAGGTTATATAAAT
261 TTTTGATAATGTATTTTAAAAAAATGATTAGGTTATATAAAT
106547299 TTATTTATTTATTTGATAATTTTTATTGATTGATTAAAATTTTGATTAAATTTGTTATTATATAA
1 TTATTTATTTATTTGATAATTTTTATTGATTGATTAAAATTTTGATTAAATTTGTTATTATATAA
* *
106547364 TTTCATAGGTTGTGTGAAAGAAACTACTTAGGTATGTTTCAATTTCAATTATTTTTAATTCATAT
66 TTTTATAGGTTATGTGAAAGAAACTACTTAGGTATGTTTCAATTTCAATTATTTTTAATTCATAT
106547429 GTTTTTTAATCTTTAGATAATTTATATTTATTTTTTATTGTATGTAAATGATGGGGAATTATAAA
131 GTTTTTTAATCTTTAGATAATTTATATTTATTTTTTATTGTATGTAAATGATGGGGAATTATAAA
106547494 ATTAATTTTTAAAATGGTTGTGCAATAAAATTATTTTTTAATAGTGTATTAGTGTATTGTGATTT
196 ATTAATTTTTAAAATGGTTGTGCAATAAAATTATTTTTTAATAGTGTATTAGTGTATTGTGATTT
106547559 TTTTGATAATGTATTTTAAAAAAAATGATTAGGTTATATAAAT
261 TTTTGATAATGTATTTT-AAAAAAATGATTAGGTTATATAAAT
106547602 TTATTTATTTATTTGATAATTTTTATTGATTGATTAAAATTTTGATTAAATTTGTTATTATATAA
1 TTATTTATTTATTTGATAATTTTTATTGATTGATTAAAATTTTGATTAAATTTGTTATTATATAA
106547667 TTTTA
66 TTTTA
106547672 ATTACAGATT
Statistics
Matches: 365, Mismatches: 5, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
300 157 0.43
301 115 0.32
303 93 0.25
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (302 bp):
TTATTTATTTATTTGATAATTTTTATTGATTGATTAAAATTTTGATTAAATTTGTTATTATATAA
TTTTATAGGTTATGTGAAAGAAACTACTTAGGTATGTTTCAATTTCAATTATTTTTAATTCATAT
GTTTTTTAATCTTTAGATAATTTATATTTATTTTTTATTGTATGTAAATGATGGGGAATTATAAA
ATTAATTTTTAAAATGGTTGTGCAATAAAATTATTTTTTAATAGTGTATTAGTGTATTGTGATTT
TTTTGATAATGTATTTTAAAAAAATGATTAGGTTATATAAAT
Found at i:106549606 original size:20 final size:21
Alignment explanation
Indices: 106549566--106549622 Score: 93
Period size: 20 Copynumber: 2.9 Consensus size: 21
106549556 GGTTTTGTAT
106549566 TGTAAATTACTTTATTTTTTA
1 TGTAAATTACTTTATTTTTTA
106549587 TGTAAATTACTTTA-TTTTTA
1 TGTAAATTACTTTATTTTTTA
106549607 TGTAAATTA-TTT-TTTT
1 TGTAAATTACTTTATTTT
106549623 GCATTATATT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.17
20 15 0.43
21 14 0.40
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.63
Consensus pattern (21 bp):
TGTAAATTACTTTATTTTTTA
Found at i:106553508 original size:17 final size:17
Alignment explanation
Indices: 106553486--106553518 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
106553476 TCTTCTTTCT
106553486 TTCTTCACTGCTTCACA
1 TTCTTCACTGCTTCACA
*
106553503 TTCTTCATTGCTTCAC
1 TTCTTCACTGCTTCAC
106553519 TGCACGGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.33, G:0.06, T:0.45
Consensus pattern (17 bp):
TTCTTCACTGCTTCACA
Found at i:106553605 original size:3 final size:3
Alignment explanation
Indices: 106553599--106553630 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
106553589 TTTTTAAAAT
106553599 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
106553631 TTAGAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:106558799 original size:21 final size:22
Alignment explanation
Indices: 106558766--106558809 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
106558756 ATAAGATAAT
*
106558766 AAACATATTTAA-TAATACATGA
1 AAACATATGTAATTAATA-ATGA
106558788 AAACATA-GTAATTAATAATGA
1 AAACATATGTAATTAATAATGA
106558809 A
1 A
106558810 TTTTGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACATATGTAATTAATAATGA
Found at i:106558955 original size:20 final size:18
Alignment explanation
Indices: 106558930--106558982 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 18
106558920 ATTTAATATG
106558930 AAAATAATAATATACATGAA
1 AAAATAATAATATA-AT-AA
106558950 AAAATATATATATATAATAA
1 AAAATA-ATA-ATATAATAA
*
106558970 ATAATAATAATAT
1 AAAATAATAATAT
106558983 GAAATAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 4 0.13
19 3 0.10
20 13 0.43
21 5 0.17
22 5 0.17
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
AAAATAATAATATAATAA
Found at i:106558988 original size:13 final size:13
Alignment explanation
Indices: 106558935--106559096 Score: 55
Period size: 13 Copynumber: 12.8 Consensus size: 13
106558925 ATATGAAAAT
*
106558935 AATAATATACATGA
1 AATAATATATAT-A
*
106558949 AAAAATATATATA
1 AATAATATATATA
*
106558962 TATAATA-A-AT-
1 AATAATATATATA
106558972 AATAATA-ATATGA
1 AATAATATATAT-A
106558985 AATAATATAT-T-
1 AATAATATATATA
** * *
106558996 GTTAAAATGTA-A
1 AATAATATATATA
106559008 AATAATATA-ATA
1 AATAATATATATA
*
106559020 ATATAAAAATATATA
1 A-AT-AATATATATA
* *
106559035 AATATTATGTGATA
1 AATAATATAT-ATA
106559049 AA-AATATA-ATA
1 AATAATATATATA
106559060 TAATAA-ATAATAAGTA
1 -AATAATAT-AT-A-TA
106559076 AATAAT-TATA-A
1 AATAATATATATA
106559087 AAT-ATATATA
1 AATAATATATA
106559097 ATACGTACAT
Statistics
Matches: 110, Mismatches: 19, Indels: 41
0.65 0.11 0.24
Matches are distributed among these distances:
10 9 0.08
11 22 0.20
12 12 0.11
13 28 0.25
14 26 0.24
15 11 0.10
16 2 0.02
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (13 bp):
AATAATATATATA
Found at i:106558988 original size:20 final size:20
Alignment explanation
Indices: 106558931--106558989 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
106558921 TTTAATATGA
*
106558931 AAATAATAATATACATGAAA-
1 AAATAATAATA-ATATGAAAT
106558951 AAAT-AT-AT-ATAT-ATAAT
1 AAATAATAATAATATGA-AAT
106558968 AAATAATAATAATATGAAAT
1 AAATAATAATAATATGAAAT
106558988 AA
1 AA
106558990 TATATTGTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
15 1 0.03
16 5 0.16
17 4 0.12
18 4 0.12
19 4 0.12
20 13 0.41
21 1 0.03
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (20 bp):
AAATAATAATAATATGAAAT
Found at i:106559021 original size:8 final size:8
Alignment explanation
Indices: 106559008--106559099 Score: 56
Period size: 8 Copynumber: 11.9 Consensus size: 8
106558998 TAAAATGTAA
106559008 AATAATAT
1 AATAATAT
106559016 AATAATAT
1 AATAATAT
*
106559024 AAAAATAT
1 AATAATAT
106559032 -ATAA-AT
1 AATAATAT
* *
106559038 ATTATGTGAT
1 AATA-AT-AT
106559048 AA-AA-AT
1 AATAATAT
106559054 -ATAATAT
1 AATAATAT
106559061 AATAA-AT
1 AATAATAT
106559068 AATAAGTA-
1 AATAA-TAT
106559076 AATAATTAT
1 AATAA-TAT
106559085 AA-AATAT
1 AATAATAT
106559092 ATATAATA
1 A-ATAATA
106559100 CGTACATTCA
Statistics
Matches: 65, Mismatches: 7, Indels: 23
0.68 0.07 0.24
Matches are distributed among these distances:
5 1 0.02
6 6 0.09
7 18 0.28
8 29 0.45
9 8 0.12
10 3 0.05
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (8 bp):
AATAATAT
Found at i:106559033 original size:18 final size:19
Alignment explanation
Indices: 106558923--106559035 Score: 78
Period size: 18 Copynumber: 6.0 Consensus size: 19
106558913 AACATCAATT
106558923 TAATATG-AAAATA-ATAA
1 TAATATGAAAAATATATAA
*
106558940 TATACATGAAAAA-ATAT-A
1 TA-ATATGAAAAATATATAA
106558958 TATATAT-AATAAATA-ATAA
1 TA-ATATGAA-AAATATATAA
**
106558977 TAATATGAAATAATATATTGT
1 TAATATGAAA-AATATA-TAA
* *
106558998 TAAAATGTAAAATAATATAA
1 TAATATGAAAAAT-ATATAA
106559018 TAATAT-AAAAATATATAA
1 TAATATGAAAAATATATAA
106559036 ATATTATGTG
Statistics
Matches: 75, Mismatches: 10, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
17 4 0.05
18 28 0.37
19 21 0.28
20 10 0.13
21 12 0.16
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (19 bp):
TAATATGAAAAATATATAA
Found at i:106559079 original size:49 final size:47
Alignment explanation
Indices: 106558950--106559079 Score: 122
Period size: 47 Copynumber: 2.7 Consensus size: 47
106558940 TATACATGAA
106558950 AAAATATATATATATAATAAATAATAAT-AATATGAAATAATATATTGT
1 AAAA-ATATA-ATATAATAAATAATAATAAATATGAAATAATATATTGT
* * * * *
106558998 TAAAATGTAAAATAATATAATAAT-ATAAAAAT-ATATAAATATTATGTGAT
1 AAAAATATAATATAATA-AATAATAATAAATATGAAAT-AATA-TAT-TG-T
106559048 AAAAATATAATATAATAAATAATAAGTAAATA
1 AAAAATATAATATAATAAATAATAA-TAAATA
106559080 ATTATAAAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
46 12 0.18
47 18 0.28
48 6 0.09
49 8 0.12
50 16 0.25
51 5 0.08
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.35
Consensus pattern (47 bp):
AAAAATATAATATAATAAATAATAATAAATATGAAATAATATATTGT
Found at i:106561566 original size:206 final size:206
Alignment explanation
Indices: 106560863--106561615 Score: 1132
Period size: 206 Copynumber: 3.7 Consensus size: 206
106560853 AAATCTGCTT
* *
106560863 CTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * *
106560928 GCGAAAGCCAAATCAGCTAT-GTCTTCGATTTGTACCTTGTAAGCACAAGGATACCAAACCATCT
66 GTGAAAGCCAAATCAGCTATGGT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
* * * * ** * * *
106560992 TGGATTTGCTTCAATCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
130 TGGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATAT
106561057 GGAGACGCCAAA
195 GGAGACGCCAAA
*
106561069 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGA----C-T--T-GTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
106561126 GTGAAAGCTAAATCAGCTATGGTTTTGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
106561191 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGAT-TGCTATGTATCTGCTCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATG
106561255 GAGACGCCAAA
196 GAGACGCCAAA
*
106561266 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
106561331 GTGAAAGCTAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
*
106561396 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTACTATGTATCTGCTCTCCGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATG
*
106561461 AAGACGCCAAA
196 GAGACGCCAAA
* *
106561472 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTATTGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* ** *
106561537 GTGAAAGCCAAATTAATTAT-GTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
66 GTGAAAGCCAAATCAGCTATGGT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
106561601 TGGATCTTGCTTCAG
130 TGGATC-TGCTTCAG
106561616 CCAGATCTGC
Statistics
Matches: 502, Mismatches: 33, Indels: 23
0.90 0.06 0.04
Matches are distributed among these distances:
197 81 0.16
198 92 0.18
199 2 0.00
201 2 0.00
202 2 0.00
204 1 0.00
205 109 0.22
206 205 0.41
207 8 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAATATG
GAGACGCCAAA
Found at i:106573567 original size:21 final size:22
Alignment explanation
Indices: 106573534--106573577 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
106573524 ATAAGATAAT
*
106573534 AAACATATTTAA-TAATACATGA
1 AAACATATGTAATTAATA-ATGA
106573556 AAACATA-GTAATTAATAATGA
1 AAACATATGTAATTAATAATGA
106573577 A
1 A
106573578 TTTTGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACATATGTAATTAATAATGA
Found at i:106579228 original size:25 final size:23
Alignment explanation
Indices: 106579156--106579229 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 23
106579146 TAATGAAAAA
*
106579156 ATATTTTTAATATTTTTAAAACTTT
1 ATATTTTTTA-ATTTTTAAAA-TTT
* * *
106579181 ATATTCTTTTAATATTCATAATTT
1 ATATT-TTTTAATTTTTAAAATTT
106579205 AACTATTTTTTAATTTTTAAAATTT
1 -A-TATTTTTTAATTTTTAAAATTT
106579230 TTATAATACT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
24 3 0.08
25 28 0.72
26 8 0.21
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (23 bp):
ATATTTTTTAATTTTTAAAATTT
Found at i:106579820 original size:3 final size:3
Alignment explanation
Indices: 106579814--106579965 Score: 116
Period size: 3 Copynumber: 51.3 Consensus size: 3
106579804 TAAAAAAATG
* * * * *
106579814 ATA ATA AAA ATA ATT GTA ATA ATA ATA CTA ATA ATA CT- ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
106579861 ATG ACA GTA GTG ATA A-A ATA ATA ATA ATA GTA GTG ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
106579908 ATA ATA ATA ATA ATA ATA GA-A ATA ATA ATA CTGA A-A ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA AT-A ATA ATA ATA ATA
106579953 A-A TATA ATA ATA A
1 ATA -ATA ATA ATA A
106579966 ATATAAAACT
Statistics
Matches: 117, Mismatches: 24, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
2 7 0.06
3 107 0.91
4 3 0.03
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:106580480 original size:5 final size:5
Alignment explanation
Indices: 106580472--106580508 Score: 56
Period size: 5 Copynumber: 7.0 Consensus size: 5
106580462 CTAATTTAAT
106580472 AATAA AATAA AATAA AATAAA AATAAA AATAA AATAA
1 AATAA AATAA AATAA AAT-AA AAT-AA AATAA AATAA
106580509 TATCTTCCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 20 0.65
6 11 0.35
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:106581054 original size:89 final size:88
Alignment explanation
Indices: 106580957--106581305 Score: 305
Period size: 89 Copynumber: 3.9 Consensus size: 88
106580947 GGTTGGTAAT
* * *
106580957 TTCAACCTGCTCCACTGCAACTTCAGGGATATAAGGTTTGTGGTCTTTAGTCTGCTCCACTGCAA
1 TTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGT-ATCTTTAGTCTGCTCCACTGCAA
* *
106581022 CTTTAGAGAGATAAAACTTGCTTC
65 CTTCAGAGAGATAAGACTTGCTTC
* * * ** * *
106581046 TTCAACCTGCTCTACTGCAACTTCAAAGAGATAAGGTTTGTTATC-TTCGATCTATTTCGCTGCA
1 TTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTG-TATCTTTAG-TCTGCTCCACTGCA
*
106581110 ACTTCA-AGGAGATAAGATTTGCTATC
64 ACTTCAGA-GAGATAAGACTTGCT-TC
* * * *** *
106581136 CTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACCTGCTAT-TTTCAGTTTGCTCCACTGCA
1 TTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTG-TATCTTT-AGTCTGCTCCACTGCA
*
106581200 ACTTCAGGGAGATAAGACTTG-TTAC
64 ACTTCAGAGAGATAAGACTTGCTT-C
* * * * **
106581225 TTCAACCTGCTCTACTACAACTTCAGAGAAATAAGGTTT-TCCAT-TTTCGATCTGCTCCGTTGC
1 TTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGT--ATCTTTAG-TCTGCTCCACTGC
*
106581288 AACTTCAGGGAGATAAGA
63 AACTTCAGAGAGATAAGA
106581306 TCTACTATTT
Statistics
Matches: 206, Mismatches: 43, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
87 1 0.00
88 6 0.03
89 131 0.64
90 67 0.33
91 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (88 bp):
TTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGTTTGTATCTTTAGTCTGCTCCACTGCAAC
TTCAGAGAGATAAGACTTGCTTC
Found at i:106581154 original size:45 final size:45
Alignment explanation
Indices: 106580930--106581306 Score: 262
Period size: 45 Copynumber: 8.4 Consensus size: 45
106580920 ACTCTGCTGG
* ** * *
106580930 AACTTCAAGGAGGTAAGGGTTGGTAAT-TTCAACCTGCTCCACTGC
1 AACTTCAAGGAGATAAGATTTGCT-ATCTTCAATCTGCTCCACTGC
* * * * * *
106580975 AACTTCAGGGATATAAGGTTTG-TGGTCTTTAGTCTGCTCCACTGC
1 AACTTCAAGGAGATAAGATTTGCT-ATCTTCAATCTGCTCCACTGC
* * * * *
106581020 AACTT-TAGAGAGATAAAACTTGCT-TCTTCAACCTGCTCTACTGC
1 AACTTCAAG-GAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
* * * * ** * *
106581064 AACTTCAAAGAGATAAGGTTTGTTATCTTCGATCTATTTCGCTGC
1 AACTTCAAGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
*
106581109 AACTTCAAGGAGATAAGATTTGCTATCCTCAATCTGCTCCACTGC
1 AACTTCAAGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
* ** * * *
106581154 AACTTCAGGGAGATAAGACCTGCTATTTTCAGTTTGCTCCACTGC
1 AACTTCAAGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
* * * * * *
106581199 AACTTCAGGGAGATAAGACTTGTTA-CTTCAACCTGCTCTACTAC
1 AACTTCAAGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
* * * * * * **
106581243 AACTTC-AGAGAAATAAGGTTTTCCATTTTCGATCTGCTCCGTTGC
1 AACTTCAAG-GAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
*
106581288 AACTTCAGGGAGATAAGAT
1 AACTTCAAGGAGATAAGAT
106581307 CTACTATTTT
Statistics
Matches: 251, Mismatches: 73, Indels: 16
0.74 0.21 0.05
Matches are distributed among these distances:
43 1 0.00
44 64 0.25
45 184 0.73
46 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (45 bp):
AACTTCAAGGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGC
Found at i:106581214 original size:179 final size:178
Alignment explanation
Indices: 106580908--106581306 Score: 457
Period size: 179 Copynumber: 2.2 Consensus size: 178
106580898 AAGAGATTTA
* * * ** * *
106580908 TATCTTCGATCTACTCTGCTGGAACTTCAAGGAGGTAAGGGTTGGTAATTTCAACCTGCTCCACT
1 TATCTTCGATCTATTC-GCTGCAACTTCAAGGAGATAAGATTTGCTAATCTCAACCTGCTCCACT
* *** * *
106580973 GCAACTTCAGGGATATAAGGTTTGTGGTCTTTAGTCTGCTCCACTGCAACTTTAGAGAGATAAAA
65 GCAACTTCAGGGAGATAAGACCTGTGATCTTTAGTCTGCTCCACTGCAACTTCAGAGAGATAAAA
* *
106581038 CTTGCTT-CTTCAACCTGCTCTACTGCAACTTCAAAGAGATAAGGTTTGT-
130 CTTG-TTACTTCAACCTGCTCTACTACAACTTCAAAGAAATAAGGTTT-TC
*
106581087 TATCTTCGATCTATTTCGCTGCAACTTCAAGGAGATAAGATTTGCT-ATCCTCAATCTGCTCCAC
1 TATCTTCGATCTA-TTCGCTGCAACTTCAAGGAGATAAGATTTGCTAAT-CTCAACCTGCTCCAC
* *
106581151 TGCAACTTCAGGGAGATAAGACCTGCT-AT-TTTCAGTTTGCTCCACTGCAACTTCAGGGAGATA
64 TGCAACTTCAGGGAGATAAGACCTG-TGATCTTT-AGTCTGCTCCACTGCAACTTCAGAGAGATA
* *
106581214 AGACTTGTTACTTCAACCTGCTCTACTACAACTTCAGAGAAATAAGGTTTTC
127 AAACTTGTTACTTCAACCTGCTCTACTACAACTTCAAAGAAATAAGGTTTTC
* * * * * *
106581266 CATTTTCGATCTGCTCCGTTGCAACTTCAGGGAGATAAGAT
1 TATCTTCGATCT-ATTCGCTGCAACTTCAAGGAGATAAGAT
106581307 CTACTATTTT
Statistics
Matches: 187, Mismatches: 26, Indels: 14
0.82 0.11 0.06
Matches are distributed among these distances:
178 8 0.04
179 176 0.94
180 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (178 bp):
TATCTTCGATCTATTCGCTGCAACTTCAAGGAGATAAGATTTGCTAATCTCAACCTGCTCCACTG
CAACTTCAGGGAGATAAGACCTGTGATCTTTAGTCTGCTCCACTGCAACTTCAGAGAGATAAAAC
TTGTTACTTCAACCTGCTCTACTACAACTTCAAAGAAATAAGGTTTTC
Found at i:106581434 original size:89 final size:88
Alignment explanation
Indices: 106581341--106581526 Score: 214
Period size: 89 Copynumber: 2.1 Consensus size: 88
106581331 GCTACCTCAA
* * *
106581341 GGAGATAAGGCTAGTGGCTTAAATCTGCT-TCATTACCGCTACATGGAGATAAGATTCACCGTCT
1 GGAGATAAGGCTAGTGGCCTAAATCTGCTCT-ATTACCGCTACATGGAGATAAAATTCACCAT-T
* *
106581405 TT-GATCTACCCCACTGCTACTTTAG
64 TTCGATCTACCCCACTGCTA-GTAAG
* * * * * *
106581430 GGAGATGAGGTTGGTGGCCTAAATCTGCTCTATTGCTGCTTCATGGAGATAAAATTCACCATTTT
1 GGAGATAAGGCTAGTGGCCTAAATCTGCTCTATTACCGCTACATGGAGATAAAATTCACCATTTT
* *
106581495 CGATCTGCTCCACTGCTAGTAAG
66 CGATCTACCCCACTGCTAGTAAG
106581518 GGAGATAAG
1 GGAGATAAG
106581527 ATCTACAATC
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
88 14 0.17
89 66 0.81
90 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (88 bp):
GGAGATAAGGCTAGTGGCCTAAATCTGCTCTATTACCGCTACATGGAGATAAAATTCACCATTTT
CGATCTACCCCACTGCTAGTAAG
Found at i:106581630 original size:132 final size:132
Alignment explanation
Indices: 106581476--106582587 Score: 1284
Period size: 132 Copynumber: 8.4 Consensus size: 132
106581466 TGCTTCATGG
* * ** * * *
106581476 AGATAAAATTCACCATTTTCGATCTGCTCCACTGCTAG-TAAGGGAGATAAGATCTACAATCTTC
1 AGATAAGATTCACCGTCCTCGATCTGCTCCACTACT-GCTTAGGGAGATAAGATCTGCAATCTTC
* * * * * * *
106581540 AGCTTGCCCCACTGCCGCTTAGGGATATAAGGCTAGTGGCTTAAATCTAC-TCTCCTGCTACCTT
65 AGCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTC-CCTACTACCTT
106581604 AGAA
129 AGAA
* *
106581608 AGATAAGATTCACCGTCCTCGATATGCTCCACTATTGCTTAGGGAGATACA-ATCTGCAATCTTC
1 AGATAAGATTCACCGTCCTCGATCTGCTCCACTACTGCTTAGGGAGATA-AGATCTGCAATCTTC
** *
106581672 AGCCTGCTCCACTATTGCTCAGGGAGATAAGGCCAGTGGCTTAAATCTGCTTCCCTACTA-CTTC
65 AGCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTT-
* *
106581736 GGGA
129 AGAA
* *** * * * * *
106581740 GGATAAGATTTGTCATCCTCGACCTGCTCCACTATTGCTTAGCGAGATAAGATCTGTAATCTTCA
1 AGATAAGATTCACCGTCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCA
*
106581805 GCCTGCTCCACTGCTGCTCAGGGAGATAAAGCTAGTGGCTTAAATCTGCTTCCCTACTACCTT-G
66 GCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTAG
106581869 AGA
131 A-A
** * *
106581872 AGATAAGATTCGTCGTCCTTGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGCAATCTTCA
1 AGATAAGATTCACCGTCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCA
* * * * * ** *
106581937 GCCTTCTCCACTTCTGCTTAGGGAGATAAGGCTAATGGTTTAAATCTGCTTCATTACTACCTCA-
66 GCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTAG
106582001 AGA
131 A-A
** * * * *
106582004 AGATAAGATTCGTCGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATATGATCTGTAATCTTCA
1 AGATAAGATTCACCGTCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCA
* * * * * * *
106582069 GCCTGCTCTACTGCTGCTCAGGGAGATAAGCCTAATGGCTTAAATATACTTCTCTACTACCTCAG
66 GCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTAG
106582134 AA
131 AA
* * *
106582136 AGATAAGATTCACCATCCTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCA
1 AGATAAGATTCACCGTCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCA
* * * * * *
106582201 ACCTGCTCCACTACTGCTCAGGGAGATAAGGCTAGTGACTTAAATATGCTTCTCTACTACCTTGG
66 GCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTAG
*
106582266 GA
131 AA
* * * * *
106582268 AGATAAGATTCGCTGTCCTCGATCTGCTCCACTACTGCTTAAGGAGACAAAATCTGCAATCTTCA
1 AGATAAGATTCACCGTCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCA
* * * * * * *
106582333 GCATGCTCTACTACTGCTCAAGGAGATAAGGCTAGTAGCTTAAATCTGCTTCCCTACTATC-TCG
66 GCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTAG
106582397 AGA
131 A-A
* *
106582400 AGATAAGATTCACCGTCCTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTACAATCTTCA
1 AGATAAGATTCACCGTCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCA
* * * * **
106582465 GCCTGCTCCACTGTTACTTAGGGAGATAAGGCTAATGGCTTAAATCTGCTTCCCTACTACCTCGG
66 GCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTAG
*
106582530 GA
131 AA
* * * * *
106582532 AGATAAGATTCATCATCATTGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTG
1 AGATAAGATTCACCGTCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
106582588 TGAATTCACC
Statistics
Matches: 837, Mismatches: 132, Indels: 22
0.84 0.13 0.02
Matches are distributed among these distances:
131 8 0.01
132 821 0.98
133 8 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (132 bp):
AGATAAGATTCACCGTCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCA
GCCTGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTAG
AA
Found at i:106581831 original size:44 final size:44
Alignment explanation
Indices: 106581632--106581833 Score: 153
Period size: 44 Copynumber: 4.6 Consensus size: 44
106581622 GTCCTCGATA
* *
106581632 TGCTCCACTATTGCTTAGGGAGATACA-ATCTGCAATCTTCAGCC
1 TGCTCCACTATTGCTCAGGGAGATA-AGATCTGTAATCTTCAGCC
** * ** * **
106581676 TGCTCCACTATTGCTCAGGGAGATAAGGCCAGT-GGCTTAAATC
1 TGCTCCACTATTGCTCAGGGAGATAAGATCTGTAATCTTCAGCC
* * * * *
106581719 TGCTTCC-CTACTACTTC-GGGAGGATAAGATTTGTCATCCTC-GACC
1 TGC-TCCACTATTGC-TCAGGGA-GATAAGATCTGTAATCTTCAG-CC
* *
106581764 TGCTCCACTATTGCTTAGCGAGATAAGATCTGTAATCTTCAGCC
1 TGCTCCACTATTGCTCAGGGAGATAAGATCTGTAATCTTCAGCC
**
106581808 TGCTCCACTGCTGCTCAGGGAGATAA
1 TGCTCCACTATTGCTCAGGGAGATAA
106581834 AGCTAGTGGC
Statistics
Matches: 116, Mismatches: 33, Indels: 18
0.69 0.20 0.11
Matches are distributed among these distances:
43 18 0.16
44 83 0.72
45 15 0.13
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (44 bp):
TGCTCCACTATTGCTCAGGGAGATAAGATCTGTAATCTTCAGCC
Found at i:106582052 original size:44 final size:44
Alignment explanation
Indices: 106582027--106582230 Score: 118
Period size: 44 Copynumber: 4.6 Consensus size: 44
106582017 CGTCTTCGAT
* *
106582027 CTGCTCTACTACTGCTTAGGGAGATATGATCTGTAATCTTCAGC
1 CTGCTCTACTACTGCTCAGGGAGATAAGATCTGTAATCTTCAGC
* * * **
106582071 CTGCTCTACTGCTGCTCAGGGAGATAAG--C-CTAATGGCTTAAATATA
1 CTGCTCTACTACTGCTCAGGGAGATAAGATCTGTAAT--CTT---CAGC
* ** * * *
106582117 CTTCTCTACTAC--CTCAGAAAGATAAGAT-T-CACCATCCTC-GAT
1 CTGCTCTACTACTGCTCAGGGAGATAAGATCTGTA--ATCTTCAG-C
* * * *
106582159 CTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAAC
1 CTGCTCTACTACTGCTCAGGGAGATAAGATCTGTAATCTTCAGC
*
106582203 CTGCTCCACTACTGCTCAGGGAGATAAG
1 CTGCTCTACTACTGCTCAGGGAGATAAG
106582231 GCTAGTGACT
Statistics
Matches: 117, Mismatches: 27, Indels: 32
0.66 0.15 0.18
Matches are distributed among these distances:
41 4 0.03
42 11 0.09
43 3 0.03
44 81 0.69
45 4 0.03
46 12 0.10
47 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
CTGCTCTACTACTGCTCAGGGAGATAAGATCTGTAATCTTCAGC
Found at i:106582165 original size:396 final size:393
Alignment explanation
Indices: 106581494--106582588 Score: 1437
Period size: 396 Copynumber: 2.8 Consensus size: 393
106581484 TTCACCATTT
* * * * * *
106581494 TCGATCTGCTCCACTGCTAG-TAAGGGAGATAAGATCTACAATCTTCAG-CTTGCCCCACTGCCG
1 TCGATCTGCTCCACTACT-GCTTA-GGAGATAAGATCTGCAATCTTCAGCCTT-CTCCACTACTG
* * * *
106581557 CTTAGGGATATAAGGCTAGTGGCTTAAATCTACTCTCCTGCTACCT-TAGAAAGATAAGATTCAC
63 CTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCT-TCCTACTACCTCAAG-AAGATAAGATTCAC
* *
106581621 CGTCCTCGATATGCTCCACTATTGCTTAGGGAGATACA-ATCTGCAATCTTCAGCCTGCTCCACT
126 CGTCCTCGATCTGCTCCACTACTGCTTAGGGAGATA-AGATCTGCAATCTTCAGCCTGCTCCACT
* * * *
106581685 ATTGCTCAGGGAGATAAGGCC-AGTGGCTTAAATCTGCTTCCCTACTACTTCGGGAGGATAAGAT
190 GTTGCTCAGGGAGATAA-GCCTAATGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGAT
** * * *
106581749 TTGTCATCCTCGACCTGCTCCACTATTGCTTAGCGAGATAAGATCTGTAATCTTCAGCCTGCTCC
254 TCATCATCCTCGATCTGCTCCACTACTGCTTAG-GAGATAAGATCTGTAATCTTCAACCTGCTCC
* * *
106581814 ACTGCTGCTCAGGGAGATAAAGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGAGAAGATAAG
318 ACTACTGCTCAGGGAGATAAAGCTAGTGACTTAAATATGCTTCCCTACTACCTTGAGAAGATAAG
106581879 ATTCG-TCGTCC
383 ATTCGCT-GTCC
* *
106581890 TTGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGCAATCTTCAGCCTTCTCCACTTCTGCT
1 TCGATCTGCTCCACTACTGCTTAGG-AGATAAGATCTGCAATCTTCAGCCTTCTCCACTACTGCT
* * * **
106581955 TAGGGAGATAAGGCTAATGGTTTAAATCTGCTTCATTACTACCTCAAGAAGATAAGATTCGTCGT
65 TAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTC-CTACTACCTCAAGAAGATAAGATTCACCGT
* * * * * *
106582020 CTTCGATCTGCTCTACTACTGCTTAGGGAGATATGATCTGTAATCTTCAGCCTGCTCTACTGCTG
129 CCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTGTTG
* * * * * *
106582085 CTCAGGGAGATAAGCCTAATGGCTTAAATATACTTCTCTACTACCTCAGAAAGATAAGATTCACC
194 CTCAGGGAGATAAGCCTAATGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCATC
*
106582150 ATCCTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAACCTGCTCCACTAC
259 ATCCTCGATCTGCTCCACTACTGCTTA-GGAGATAAGATCTGTAATCTTCAACCTGCTCCACTAC
* * *
106582215 TGCTCAGGGAGATAAGGCTAGTGACTTAAATATGCTTCTCTACTACCTTGGGAAGATAAGATTCG
323 TGCTCAGGGAGATAAAGCTAGTGACTTAAATATGCTTCCCTACTACCTTGAGAAGATAAGATTCG
106582280 CTGTCC
388 CTGTCC
* * * * *
106582286 TCGATCTGCTCCACTACTGCTTAAGGAGACAAAATCTGCAATCTTCAGCATGCTCTACTACTGCT
1 TCGATCTGCTCCACTACTGCTT-AGGAGATAAGATCTGCAATCTTCAGCCTTCTCCACTACTGCT
* * * * *
106582351 CAAGGAGATAAGGCTAGTAGCTTAAATCTGCTTCCCTACTATCTCGAGAAGATAAGATTCACCGT
65 TAGGGAGATAAGGCTAGTGGCTTAAATCTGCTT-CCTACTACCTCAAGAAGATAAGATTCACCGT
* * *
106582416 CCTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGTTA
129 CCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTGTTG
* *
106582481 CTTAGGGAGATAAGGCTAATGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCATC
194 CTCAGGGAGATAAGCCTAATGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCATC
* *
106582546 ATCATTGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGT
259 ATCCTCGATCTGCTCCACTACTGCTTAGG-AGATAAGATCTGT
106582589 GAATTCACCG
Statistics
Matches: 604, Mismatches: 83, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
395 10 0.02
396 583 0.97
397 11 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (393 bp):
TCGATCTGCTCCACTACTGCTTAGGAGATAAGATCTGCAATCTTCAGCCTTCTCCACTACTGCTT
AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCTACTACCTCAAGAAGATAAGATTCACCGTCC
TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTGTTGCT
CAGGGAGATAAGCCTAATGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCATCAT
CCTCGATCTGCTCCACTACTGCTTAGGAGATAAGATCTGTAATCTTCAACCTGCTCCACTACTGC
TCAGGGAGATAAAGCTAGTGACTTAAATATGCTTCCCTACTACCTTGAGAAGATAAGATTCGCTG
TCC
Found at i:106583390 original size:30 final size:30
Alignment explanation
Indices: 106583356--106583417 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
106583346 TCTTTTATGA
106583356 AAGTACTATTAGTCCACTAATCGTTATTTC
1 AAGTACTATTAGTCCACTAATCGTTATTTC
*
106583386 AAGTATTATTAGTCCACTAATCGTTATTTC
1 AAGTACTATTAGTCCACTAATCGTTATTTC
106583416 AA
1 AA
106583418 TGCAAAATGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (30 bp):
AAGTACTATTAGTCCACTAATCGTTATTTC
Found at i:106587561 original size:25 final size:21
Alignment explanation
Indices: 106587526--106587573 Score: 51
Period size: 23 Copynumber: 2.1 Consensus size: 21
106587516 TATATACAAA
*
106587526 AATATTTAAATGATATATTATAT
1 AATATTTAAAT-A-ATATGATAT
106587549 AATATCTTAAAATAATATGATAT
1 AATAT-TT-AAATAATATGATAT
106587572 AA
1 AA
106587574 AGAAAATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 15 0.68
24 3 0.14
25 4 0.18
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (21 bp):
AATATTTAAATAATATGATAT
Found at i:106589662 original size:89 final size:89
Alignment explanation
Indices: 106589569--106589841 Score: 242
Period size: 89 Copynumber: 3.1 Consensus size: 89
106589559 CGATACATGG
*
106589569 AGATAAGATTCGCCTCTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATCTTCA
1 AGATAAGATTCGCCTCTTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTTCAATCTTCA
**
106589634 GTCTGCTTCCTTGCTACATCAAAA
66 GTCTGCTTCCTTGCTACATCAGGA
** * * ** * **
106589658 AGATAAGACTT--AATC-TTCAACCTGCTCTCTTGCTAC--CTTAGATAGATAA-AGCTT-AGGG
1 AGATAAGA-TTCGCCTCTTTCGATCTGCTC-C--GCTACTGCTTAGGGAGATAAGATCTTCA-AT
* * **
106589716 CTTAAATCTGC-TCCATTG-TTGATACATGGA
61 CTTCAGTCTGCTTCC-TTGCTACAT-CA-GGA
*
106589746 A-ATAAGATTCGCCTCTTTCGATTTGCTCCGCTACTGCTTAGGGAGATAAGATCTTCAATCTTCA
1 AGATAAGATTCGCCTCTTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTTCAATCTTCA
*
106589810 GTCTGCTTCCTTGCTACCTCAGGA
66 GTCTGCTTCCTTGCTACATCAGGA
106589834 AGATAAGA
1 AGATAAGA
106589842 CTCAATCTTC
Statistics
Matches: 135, Mismatches: 31, Indels: 36
0.67 0.15 0.18
Matches are distributed among these distances:
86 14 0.10
87 34 0.25
88 34 0.25
89 41 0.30
90 12 0.09
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (89 bp):
AGATAAGATTCGCCTCTTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTTCAATCTTCA
GTCTGCTTCCTTGCTACATCAGGA
Found at i:106589681 original size:176 final size:176
Alignment explanation
Indices: 106589363--106589975 Score: 877
Period size: 176 Copynumber: 3.5 Consensus size: 176
106589353 AGGCTGGTGA
* * * * * * * *
106589363 CTTAAATCTGCTCCATTGCCGATACATAGAGATAAAATTTG-CTGTCTTCGATCTACTCCGCTGC
1 CTTAAATCTGCTCCATTGCCGATACATGGAAATAAGATTCGCCTCT-TTCGATCTGCTCCACTAC
** * * * * *
106589427 AACTTCAGGGAGATAATATCTTTAATATTCAGTCTGCTTCCCTGTTACCTCAGGAAGATAAGACT
65 TGCTT-AGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT
*
106589492 CAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTTGGGG
129 CAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGCTTGGGG
*
106589540 CTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCTCTTTCGATCTGCTCCACTACT
1 CTTAAATCTGCTCCATTGCCGATACATGGAAATAAGATTCGCCTCTTTCGATCTGCTCCACTACT
* ** *
106589605 GCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACATCAAAAAGATAAGACTTA
66 GCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCA
* *
106589670 ATCTTCAACCTGCTCTCTTGCTACCTTAGATAGATAAAGCTTAGGG
131 ATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGCTTGGGG
** * *
106589716 CTTAAATCTGCTCCATTGTTGATACATGGAAATAAGATTCGCCTCTTTCGATTTGCTCCGCTACT
1 CTTAAATCTGCTCCATTGCCGATACATGGAAATAAGATTCGCCTCTTTCGATCTGCTCCACTACT
106589781 GCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCA
66 GCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCA
* * ** *
106589846 ATCTTCAACCTGCTCTCTTGCTACGTTAGAGAGATAAGGCCAGTGG
131 ATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGCTTGGGG
* * * *
106589892 CTAAAATCTGCTCCATTGCCGATACATGGAAATAAGATTCGCCGCATTCGATCTGCTCCACCACT
1 CTTAAATCTGCTCCATTGCCGATACATGGAAATAAGATTCGCCTCTTTCGATCTGCTCCACTACT
106589957 GCTTAGGGAGATAAGATCT
66 GCTTAGGGAGATAAGATCT
106589976 GACTTCACCA
Statistics
Matches: 390, Mismatches: 45, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
176 331 0.85
177 56 0.14
178 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (176 bp):
CTTAAATCTGCTCCATTGCCGATACATGGAAATAAGATTCGCCTCTTTCGATCTGCTCCACTACT
GCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCA
ATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAAGCTTGGGG
Found at i:106589881 original size:43 final size:44
Alignment explanation
Indices: 106589782--106589883 Score: 111
Period size: 43 Copynumber: 2.3 Consensus size: 44
106589772 TCCGCTACTG
**
106589782 CTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTAC
1 CTTA-GGAGATAAGATCTTCAATCTTCAACCTGCTTCCTTGCTAC
*
106589827 CTCAGGAAGATAAGA-C-TCAATCTTCAACCTGC-TCTCTTGCTAC
1 CTTAGG-AGATAAGATCTTCAATCTTCAACCTGCTTC-CTTGCTAC
*
106589870 GTTAGAGAGATAAG
1 CTTAG-GAGATAAG
106589884 GCCAGTGGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.04
43 32 0.65
44 4 0.08
45 11 0.22
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
CTTAGGAGATAAGATCTTCAATCTTCAACCTGCTTCCTTGCTAC
Found at i:106600693 original size:12 final size:11
Alignment explanation
Indices: 106600662--106600695 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
106600652 CATTCTAACA
106600662 AATTAAGTTTT
1 AATTAAGTTTT
*
106600673 AATTCAGTTTAT
1 AATTAAGTTT-T
106600685 AATTAAGTTTT
1 AATTAAGTTTT
106600696 CTACAGCTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.53
Consensus pattern (11 bp):
AATTAAGTTTT
Found at i:106603506 original size:10 final size:10
Alignment explanation
Indices: 106603493--106603537 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
106603483 AGCTCACTTG
106603493 AGCTCGATTC
1 AGCTCGATTC
* *
106603503 AGCTCGTTTG
1 AGCTCGATTC
*
106603513 AGCTAGAATTC
1 AGCTCG-ATTC
106603524 AGCTCGATTC
1 AGCTCGATTC
106603534 AGCT
1 AGCT
106603538 TATTTCTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
10 21 0.75
11 7 0.25
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (10 bp):
AGCTCGATTC
Found at i:106603525 original size:21 final size:20
Alignment explanation
Indices: 106603481--106603529 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
106603471 TCAGCTCCCA
* *
106603481 TCAGCTCACTTGAGCTCGAT
1 TCAGCTCGCTTGAGCTAGAT
*
106603501 TCAGCTCGTTTGAGCTAGAAT
1 TCAGCTCGCTTGAGCTAG-AT
106603522 TCAGCTCG
1 TCAGCTCG
106603530 ATTCAGCTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (20 bp):
TCAGCTCGCTTGAGCTAGAT
Found at i:106603578 original size:11 final size:12
Alignment explanation
Indices: 106603559--106603591 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
106603549 CATTCTAATA
106603559 AATTAAGTTT-T
1 AATTAAGTTTAT
*
106603570 AATTCAGTTTAT
1 AATTAAGTTTAT
106603582 AATTAAGTTT
1 AATTAAGTTT
106603592 GCTACAGCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (12 bp):
AATTAAGTTTAT
Found at i:106605675 original size:29 final size:30
Alignment explanation
Indices: 106605628--106605685 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
106605618 ATAATAGATC
*
106605628 TTTTAAAAAAAGTATATATATATAAATAAA
1 TTTTAAAAAAAGTATATATATAAAAATAAA
*
106605658 TTTTAAAAGAAA-T-TATATGTAAAAATAA
1 TTTTAAAA-AAAGTATATATATAAAAATAA
106605686 TATGGAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 13 0.52
30 9 0.36
31 3 0.12
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (30 bp):
TTTTAAAAAAAGTATATATATAAAAATAAA
Found at i:106605764 original size:23 final size:23
Alignment explanation
Indices: 106605738--106605785 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
106605728 TATATACAAA
*
106605738 AATAT-TTAAACAAAATATTATAT
1 AATATGTTAAA-AAAATATGATAT
*
106605761 AATATGTTAAAATAATATGATAT
1 AATATGTTAAAAAAATATGATAT
106605784 AA
1 AA
106605786 AGAAAATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (23 bp):
AATATGTTAAAAAAATATGATAT
Found at i:106609110 original size:15 final size:14
Alignment explanation
Indices: 106609090--106609128 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
106609080 GAATAGGTAC
106609090 ATAATAGGATAATA
1 ATAATAGGATAATA
*
106609104 TATAATAAGATAATA
1 -ATAATAGGATAATA
106609119 ATAATGAGGA
1 ATAAT-AGGA
106609129 CAAGAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.28
Consensus pattern (14 bp):
ATAATAGGATAATA
Found at i:106609169 original size:20 final size:19
Alignment explanation
Indices: 106609133--106609173 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
106609123 TGAGGACAAG
106609133 AATAAAATAAAAATGAAAT
1 AATAAAATAAAAATGAAAT
*
106609152 AATAAAATAATTAATGAAAT
1 AATAAAATAA-AAATGAAAT
106609172 AA
1 AA
106609174 CAAAGGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (19 bp):
AATAAAATAAAAATGAAAT
Found at i:106609275 original size:3 final size:3
Alignment explanation
Indices: 106609269--106609420 Score: 78
Period size: 3 Copynumber: 51.3 Consensus size: 3
106609259 TAAAAAAATG
* * * *
106609269 ATA ATA AAA ATA ATA GTA ATA ATA ATA CTA ATA ATA CT- ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * *
106609316 ATG ACA GTA GTG AGA A-A ATA ATA ATA ATA ATA ATA GTA ATA GTA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
106609363 GTA GTA ACA GTA ATA ACA AAA ATA ATA ATA CTGA A-A ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
106609408 A-A TATA ATA ATA A
1 ATA -ATA ATA ATA A
106609421 ATATAAAACT
Statistics
Matches: 113, Mismatches: 30, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
2 6 0.05
3 105 0.93
4 2 0.02
ACGTcount: A:0.59, C:0.04, G:0.09, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:106609414 original size:12 final size:12
Alignment explanation
Indices: 106609399--106609426 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
106609389 AATACTGAAA
106609399 ATAATAATAAAT
1 ATAATAATAAAT
106609411 ATAATAATAAAT
1 ATAATAATAAAT
106609423 ATAA
1 ATAA
106609427 AACTCAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAATAATAAAT
Found at i:106623879 original size:21 final size:21
Alignment explanation
Indices: 106623854--106623896 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
106623844 ATTTCTATTA
106623854 TCATTCTTGCTAGAATTTCAG
1 TCATTCTTGCTAGAATTTCAG
106623875 TCATTCTTGCTAGAATTTCAG
1 TCATTCTTGCTAGAATTTCAG
106623896 T
1 T
106623897 TTATACTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (21 bp):
TCATTCTTGCTAGAATTTCAG
Found at i:106624461 original size:21 final size:21
Alignment explanation
Indices: 106624435--106624475 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
106624425 GTTACATTAA
* *
106624435 TATTTTCATCTTGAATTTCAG
1 TATTTTCATCCTGAAATTCAG
*
106624456 TATTTTTATCCTGAAATTCA
1 TATTTTCATCCTGAAATTCA
106624476 AGATAAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.15, G:0.07, T:0.51
Consensus pattern (21 bp):
TATTTTCATCCTGAAATTCAG
Found at i:106636657 original size:29 final size:30
Alignment explanation
Indices: 106636603--106636665 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
106636593 TTCAAATTAA
* **
106636603 AAAATAAGAAGATTAAATTTTTAATTTT-T
1 AAAATAAGAAGATTAAATCTCAAATTTTAT
106636632 AAAATAA-AGAGATTAAATCTCAAATTTTAT
1 AAAATAAGA-AGATTAAATCTCAAATTTTAT
106636662 AAAA
1 AAAA
106636666 AAACGAGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 23 0.79
30 5 0.17
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (30 bp):
AAAATAAGAAGATTAAATCTCAAATTTTAT
Found at i:106637868 original size:14 final size:16
Alignment explanation
Indices: 106637839--106637870 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
106637829 AATTTTATTT
106637839 TATTAATTCAAAATAA
1 TATTAATTCAAAATAA
106637855 TATT-ATTC-AAATAA
1 TATTAATTCAAAATAA
106637869 TA
1 TA
106637871 ACCAACATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 4 0.25
16 4 0.25
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (16 bp):
TATTAATTCAAAATAA
Found at i:106645623 original size:31 final size:30
Alignment explanation
Indices: 106645588--106645654 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
106645578 TTGTTTACAT
*
106645588 TTTTATAAATTTTTAAA-AGATTAAATTAAAA
1 TTTTAT-AATTTTTAAAGAGA-TAAAGTAAAA
* *
106645619 TTTTATTATTTTTAAAGAGATAAAGTATAA
1 TTTTATAATTTTTAAAGAGATAAAGTAAAA
106645649 TTTTAT
1 TTTTAT
106645655 CTTTATTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 23 0.72
31 9 0.28
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (30 bp):
TTTTATAATTTTTAAAGAGATAAAGTAAAA
Found at i:106645631 original size:30 final size:30
Alignment explanation
Indices: 106645596--106645654 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
106645586 ATTTTTATAA
*
106645596 ATTTTTAAA-AGATTAAATTAAAATTTTATT
1 ATTTTTAAAGAGA-TAAAGTAAAATTTTATT
*
106645626 ATTTTTAAAGAGATAAAGTATAATTTTAT
1 ATTTTTAAAGAGATAAAGTAAAATTTTAT
106645655 CTTTATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 23 0.88
31 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.47
Consensus pattern (30 bp):
ATTTTTAAAGAGATAAAGTAAAATTTTATT
Found at i:106645856 original size:15 final size:15
Alignment explanation
Indices: 106645808--106645863 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
106645798 TATAATATTA
* *
106645808 AATTTAATCTTTAAT
1 AATTTAATTTTTTAT
*
106645823 -ATTTACATATTTTATT
1 AATTTA-ATTTTTTA-T
106645839 AATTTAATTTTTTAT
1 AATTTAATTTTTTAT
*
106645854 AATTAAATTT
1 AATTTAATTT
106645864 GATCTTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 5 0.15
15 16 0.47
16 8 0.24
17 5 0.15
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTTAATTTTTTAT
Found at i:106648163 original size:22 final size:23
Alignment explanation
Indices: 106648138--106648187 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
106648128 ATTTTTTGAG
*
106648138 TTAAAATT-TAATTTTAT-TATT
1 TTAAAATTAAAATTTTATATATT
106648159 ATT-AAATTAAAATTTTATATATT
1 -TTAAAATTAAAATTTTATATATT
106648182 TTAAAA
1 TTAAAA
106648188 AATTTAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 5 0.21
22 12 0.50
23 7 0.29
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
TTAAAATTAAAATTTTATATATT
Found at i:106651641 original size:23 final size:23
Alignment explanation
Indices: 106651613--106651706 Score: 125
Period size: 23 Copynumber: 4.1 Consensus size: 23
106651603 ATGTGTGTAT
* *
106651613 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
106651636 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
106651659 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
*
106651682 CTTTTCATATGCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
106651705 CT
1 CT
106651707 CTTCTAACTT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.22, C:0.26, G:0.05, T:0.47
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:106654584 original size:23 final size:23
Alignment explanation
Indices: 106654556--106654649 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
106654546 ATGTGTGTAT
* *
106654556 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
106654579 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
106654602 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
106654625 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
106654648 CT
1 CT
106654650 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:106656577 original size:94 final size:94
Alignment explanation
Indices: 106656454--106656645 Score: 366
Period size: 94 Copynumber: 2.0 Consensus size: 94
106656444 TGTTGCTTGA
106656454 TAAGAATTTAAACCCTAAAATATCCGATTTCAGTTTGGCCAAGCTTGATGAAGAAAATAATACCC
1 TAAGAATTTAAACCCTAAAATATCCGATTTCAGTTTGGCCAAGCTTGATGAAGAAAATAATACCC
106656519 ATATTAGTACCCGAATCGCAGGAACTTAG
66 ATATTAGTACCCGAATCGCAGGAACTTAG
*
106656548 TAAGAATTTAAACCCTAAAATATCCGATTTCGGTTTGGCCAAGCTTGATGAAGAAAATAATACCC
1 TAAGAATTTAAACCCTAAAATATCCGATTTCAGTTTGGCCAAGCTTGATGAAGAAAATAATACCC
*
106656613 ATATTAGTACTCGAATCGCAGGAACTTAG
66 ATATTAGTACCCGAATCGCAGGAACTTAG
106656642 TAAG
1 TAAG
106656646 TCTCTTTTCA
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 96 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (94 bp):
TAAGAATTTAAACCCTAAAATATCCGATTTCAGTTTGGCCAAGCTTGATGAAGAAAATAATACCC
ATATTAGTACCCGAATCGCAGGAACTTAG
Found at i:106658059 original size:17 final size:17
Alignment explanation
Indices: 106658039--106658074 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
106658029 GTTATATCAC
106658039 TTGAATAGTTATTTTTA
1 TTGAATAGTTATTTTTA
106658056 TTGAATAGTTATTTTTA
1 TTGAATAGTTATTTTTA
106658073 TT
1 TT
106658075 TAAGAGAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (17 bp):
TTGAATAGTTATTTTTA
Done.