Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 332 of 352
Found at i:106925273 original size:38 final size:38
Alignment explanation
Indices: 106925231--106925306 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
106925221 GAATAGTATG
* * *
106925231 ATATTTAAAA-ATATATACATATATATATATATAAAATA
1 ATATTAAAAATATATATACATA-ACATATACATAAAATA
106925269 ATATTAAAAATATATATACATAACATATACATAAAATA
1 ATATTAAAAATATATATACATAACATATACATAAAATA
106925307 TATACATAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 23 0.68
39 11 0.32
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (38 bp):
ATATTAAAAATATATATACATAACATATACATAAAATA
Found at i:106925282 original size:37 final size:35
Alignment explanation
Indices: 106925231--106925325 Score: 104
Period size: 38 Copynumber: 2.6 Consensus size: 35
106925221 GAATAGTATG
* *
106925231 ATAT-TTAAAAATATATACATATATATATATATAAA
1 ATATATTAAAAATATATACATA-ACATATACATAAA
106925266 ATAATATTAAAAATATATATACATAACATATACATAAA
1 AT-ATATT-AAAA-ATATATACATAACATATACATAAA
*
106925304 ATATA-TACATAATATATACATA
1 ATATATTA-AAAATATATACATA
106925326 GAATAGTATG
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
35 14 0.27
36 5 0.10
37 5 0.10
38 17 0.33
39 11 0.21
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (35 bp):
ATATATTAAAAATATATACATAACATATACATAAA
Found at i:106925307 original size:24 final size:24
Alignment explanation
Indices: 106925280--106925330 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
106925270 TATTAAAAAT
106925280 ATATATACATAACATATACATAAA
1 ATATATACATAACATATACATAAA
* *
106925304 ATATATACATAATATATACATAGA
1 ATATATACATAACATATACATAAA
106925328 ATA
1 ATA
106925331 GTATGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (24 bp):
ATATATACATAACATATACATAAA
Found at i:106925330 original size:13 final size:11
Alignment explanation
Indices: 106925240--106925325 Score: 67
Period size: 11 Copynumber: 8.1 Consensus size: 11
106925230 GATATTTAAA
106925240 AATATATACAT
1 AATATATACAT
106925251 -ATATAT--AT
1 AATATATACAT
*
106925259 -ATATA-AAAT
1 AATATATACAT
* *
106925268 AATAT-TAAAA
1 AATATATACAT
106925278 ATATATATACAT
1 A-ATATATACAT
*
106925290 AACATATACAT
1 AATATATACAT
106925301 AAAATATATACAT
1 --AATATATACAT
106925314 AATATATACAT
1 AATATATACAT
106925325 A
1 A
106925326 GAATAGTATG
Statistics
Matches: 62, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
8 7 0.11
9 2 0.03
10 14 0.23
11 25 0.40
12 4 0.06
13 10 0.16
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (11 bp):
AATATATACAT
Found at i:106925473 original size:3 final size:3
Alignment explanation
Indices: 106925465--106925493 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
106925455 ATATACATAT
106925465 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
106925494 CTATAAACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:106930144 original size:12 final size:12
Alignment explanation
Indices: 106930127--106930157 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
106930117 GAAGCAGGGG
106930127 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
106930139 AGAAAAAGGGAA
1 AGAAAAAGAGAA
106930151 AGAAAAA
1 AGAAAAA
106930158 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:106931168 original size:39 final size:38
Alignment explanation
Indices: 106931111--106931198 Score: 97
Period size: 39 Copynumber: 2.3 Consensus size: 38
106931101 TCGATTAGGT
* *
106931111 ACTGGGTACCAACTTTACTTCG-GCTAGGCCGATGAGAC
1 ACTGGGTGCCAACTTTACTTCGAACTA-GCCGATGAGAC
* * * *
106931149 ACTGGGTGTCAACTATTACTTTGAACTATCCGATGAGGC
1 ACTGGGTGCCAACT-TTACTTCGAACTAGCCGATGAGAC
106931188 ACTGGGTGCCA
1 ACTGGGTGCCA
106931199 TATTGGTGTG
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
38 12 0.29
39 26 0.63
40 3 0.07
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (38 bp):
ACTGGGTGCCAACTTTACTTCGAACTAGCCGATGAGAC
Found at i:106931324 original size:18 final size:18
Alignment explanation
Indices: 106931301--106931340 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
106931291 TAAAAAAAAG
106931301 GAAATT-GAATTATGAATA
1 GAAATTGGAATTATG-ATA
*
106931319 GAAATTGGAATTGTGATA
1 GAAATTGGAATTATGATA
106931337 GAAA
1 GAAA
106931341 GAGAAAAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (18 bp):
GAAATTGGAATTATGATA
Found at i:106931851 original size:20 final size:20
Alignment explanation
Indices: 106931828--106931865 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
106931818 GTTATTAAGT
106931828 TAAAAATTATGTTA-ATGATA
1 TAAAAATTA-GTTATATGATA
*
106931848 TAAATATTAGTTATATGA
1 TAAAAATTAGTTATATGA
106931866 ATGTGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (20 bp):
TAAAAATTAGTTATATGATA
Found at i:106932502 original size:19 final size:20
Alignment explanation
Indices: 106932478--106932521 Score: 81
Period size: 19 Copynumber: 2.2 Consensus size: 20
106932468 TCCAAACACT
106932478 AGAAAAGTAAATCATTTT-C
1 AGAAAAGTAAATCATTTTCC
106932497 AGAAAAGTAAATCATTTTCC
1 AGAAAAGTAAATCATTTTCC
106932517 AGAAA
1 AGAAA
106932522 TTATTTTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.27
Consensus pattern (20 bp):
AGAAAAGTAAATCATTTTCC
Found at i:106948594 original size:20 final size:21
Alignment explanation
Indices: 106948556--106948594 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
106948546 ATTTGCCTCC
106948556 CTATCTAAGATCATGTTTCCT
1 CTATCTAAGATCATGTTTCCT
*
106948577 CTATCTAAG-TCATTTTTC
1 CTATCTAAGATCATGTTTC
106948595 AGAGGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (21 bp):
CTATCTAAGATCATGTTTCCT
Found at i:106952346 original size:23 final size:21
Alignment explanation
Indices: 106952319--106952378 Score: 66
Period size: 23 Copynumber: 2.7 Consensus size: 21
106952309 ATTTTTTTTA
106952319 AAAAAATCTCAAAAAAAAATTCT
1 AAAAAAT-T-AAAAAAAAATTCT
* *
106952342 AAAAAATATATAAAGAAAATTTT
1 AAAAAAT-TA-AAAAAAAATTCT
106952365 AAAAAATTAAAAAA
1 AAAAAATTAAAAAA
106952379 TTTCTAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 4 0.12
22 3 0.09
23 25 0.78
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (21 bp):
AAAAAATTAAAAAAAAATTCT
Found at i:106952785 original size:32 final size:32
Alignment explanation
Indices: 106952744--106952808 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
106952734 CAACTAACAA
106952744 TGGAGGAATCACATATATTGTTTATATTCACT
1 TGGAGGAATCACATATATTGTTTATATTCACT
106952776 TGGAGGAATCACATATATTGTTTATATTCACT
1 TGGAGGAATCACATATATTGTTTATATTCACT
106952808 T
1 T
106952809 TTCTTGCTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (32 bp):
TGGAGGAATCACATATATTGTTTATATTCACT
Found at i:106955459 original size:21 final size:21
Alignment explanation
Indices: 106955427--106955467 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
106955417 AGGCTCGAGG
106955427 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
106955448 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
106955468 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:106963542 original size:153 final size:150
Alignment explanation
Indices: 106963164--106963661 Score: 617
Period size: 150 Copynumber: 3.3 Consensus size: 150
106963154 ACATACCTTG
* * * * * *
106963164 TTTATATTCACTTTTCTTGTTACACAAGCAATCCGAAACCATAAATAAAGGAAT-ACTTTTTTTG
1 TTTATATTCACTTTTCTTGCTACACAAGCAAGCCAAAACCATAAACAAAGGCATAACTTTTTCT-
* *** * *
106963228 CCTTTTTTAAATGGTTTTCTTGTTTCTTTCCCACTTTTTAAATTCTTAATTTAATTCAAATTCAA
65 CCTTTTTTAAATGGTTTTCTTGATTCTTTGTTA-TTTTTAAATTCTTCATTTAATTCAAGTTCAA
106963293 GAAACCATACT-AATATATATA
129 GAAACCATACTAAATATATATA
* * * *
106963314 TATATATTCACTTTTCTTGCAACACTAGCAAGCCAAAACCATAAACAAAGGCATACCTTTTTCTC
1 TTTATATTCACTTTTCTTGCTACACAAGCAAGCCAAAACCATAAACAAAGGCATAACTTTTTCTC
* * * *
106963379 CCTTTTTAAATGGTTTTCTTGATTCTTTGTTGTTTTTAAAATTCTTCATTAAATTCAAGTTAAAG
66 CTTTTTTAAATGGTTTTCTTGATTCTTTGTTATTTTT-AAATTCTTCATTTAATTCAAGTTCAAG
*
106963444 AAACCATACTAAATATATATG
130 AAACCATACTAAATATATATA
** * ** **
106963465 TTTATATTCGTTTTTTTTTTGCTACACAAGCAAGCTGAAACCATAAACAAAGGCATAAAATTTTC
1 TTTATATTC--ACTTTTCTTGCTACACAAGCAAGCCAAAACCATAAACAAAGGCATAACTTTTTC
*
106963530 TCCTTTTTTAAATGGTTTTCTT-ATTTCTTTGTTATTTTTTAGA-TCTTCATTTAATTCAAGTTC
64 TCCTTTTTTAAATGGTTTTCTTGA-TTCTTTGTTA-TTTTTAAATTCTTCATTTAATTCAAGTTC
* *
106963593 AAGAAACCATACTACATATATGTA
127 AAGAAACCATACTAAATATATATA
*
106963617 TTTATATTCACTTTTCTTGTTACACAAGCAAGCCAAAACCATAAA
1 TTTATATTCACTTTTCTTGCTACACAAGCAAGCCAAAACCATAAA
106963662 TAAATACATA
Statistics
Matches: 295, Mismatches: 46, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
149 5 0.02
150 136 0.46
151 24 0.08
152 49 0.17
153 76 0.26
154 5 0.02
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (150 bp):
TTTATATTCACTTTTCTTGCTACACAAGCAAGCCAAAACCATAAACAAAGGCATAACTTTTTCTC
CTTTTTTAAATGGTTTTCTTGATTCTTTGTTATTTTTAAATTCTTCATTTAATTCAAGTTCAAGA
AACCATACTAAATATATATA
Found at i:106964420 original size:22 final size:21
Alignment explanation
Indices: 106964369--106964420 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
106964359 TTTTAATCAC
* *
106964369 TAAATTATTAATTTTTTCGATT
1 TAAA-TATTAAATTTTTCGAAT
**
106964391 TAGTTATTAAATTTTTCGAAAT
1 TAAATATTAAATTTTTCG-AAT
106964413 TAAATATT
1 TAAATATT
106964421 TTGATCACTC
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (21 bp):
TAAATATTAAATTTTTCGAAT
Found at i:106965866 original size:14 final size:14
Alignment explanation
Indices: 106965821--106965869 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
106965811 TTATAAAAAT
*
106965821 TAATTATATTTTGA
1 TAATTATATTTTAA
* *
106965835 TAATAATA-TTAAA
1 TAATTATATTTTAA
106965848 TTAATTATATTTTAA
1 -TAATTATATTTTAA
106965863 TAATTAT
1 TAATTAT
106965870 GTAATATTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
13 3 0.11
14 21 0.75
15 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (14 bp):
TAATTATATTTTAA
Found at i:106966946 original size:37 final size:37
Alignment explanation
Indices: 106966889--106967014 Score: 141
Period size: 37 Copynumber: 3.4 Consensus size: 37
106966879 GCAATAATTT
* *
106966889 TCATTCGATTATGAATATACCTTTCTTG-TGAGTATTC
1 TCATTCTATTATGACTATACCTTTCTTGCT-AGTATTC
*
106966926 TCATTCTATT-TCGAAC-ATACCTTTCTTGCTTGTATTC
1 TCATTCTATTAT-G-ACTATACCTTTCTTGCTAGTATTC
**
106966963 TCATTCTATTATGACTATACCTTTCTTGCTTTTATTC
1 TCATTCTATTATGACTATACCTTTCTTGCTAGTATTC
*
106967000 TTATTCTATTGATGA
1 TCATTCTATT-ATGA
106967015 TTAATGTTGC
Statistics
Matches: 78, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
36 3 0.04
37 68 0.87
38 7 0.09
ACGTcount: A:0.21, C:0.19, G:0.10, T:0.50
Consensus pattern (37 bp):
TCATTCTATTATGACTATACCTTTCTTGCTAGTATTC
Found at i:106973098 original size:21 final size:19
Alignment explanation
Indices: 106973074--106973112 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
106973064 ATTTGCCTCC
106973074 CTATCTAAGACCATGTTTCCT
1 CTATCTAAG-CCAT-TTTCCT
106973095 CTATCTAAGCCATTTTCC
1 CTATCTAAGCCATTTTCC
106973113 GGAGGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 4 0.22
21 9 0.50
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (19 bp):
CTATCTAAGCCATTTTCCT
Found at i:106976801 original size:19 final size:19
Alignment explanation
Indices: 106976760--106976829 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
106976750 TTACAAAAAT
106976760 AAATTCAAAATAATTTTCAA
1 AAATTCAAAAT-ATTTTCAA
* **
106976780 AAATTGAAAATATTTTTTA
1 AAATTCAAAATATTTTCAA
*
106976799 AAATTTAAAATATTTAT-AA
1 AAATTCAAAATATTT-TCAA
106976818 AAATTCCAAAAT
1 AAATT-CAAAAT
106976830 TTATATTTCT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
19 26 0.62
20 16 0.38
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.39
Consensus pattern (19 bp):
AAATTCAAAATATTTTCAA
Found at i:106976876 original size:21 final size:21
Alignment explanation
Indices: 106976851--106976904 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
106976841 AAAATATTAT
* *
106976851 AAAAATTTCAAAA-AAATTCTA
1 AAAAATTTAAAAAGAAAGT-TA
*
106976872 AAAAATATAAAAAGAAAGTTA
1 AAAAATTTAAAAAGAAAGTTA
106976893 AAAAA-TTAAAAA
1 AAAAATTTAAAAA
106976905 TTTTCTAGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 6 0.21
21 18 0.64
22 4 0.14
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (21 bp):
AAAAATTTAAAAAGAAAGTTA
Found at i:106977494 original size:13 final size:13
Alignment explanation
Indices: 106977476--106977516 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
106977466 TGCCTTTTGG
106977476 AAGTGTTTTTAAA
1 AAGTGTTTTTAAA
*
106977489 AAGTGTTTTGAAA
1 AAGTGTTTTTAAA
**
106977502 AAGTAATTTTAAA
1 AAGTGTTTTTAAA
106977515 AA
1 AA
106977517 ATACTTTTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.39
Consensus pattern (13 bp):
AAGTGTTTTTAAA
Found at i:106983685 original size:10 final size:10
Alignment explanation
Indices: 106983658--106983717 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
106983648 TTAAATTCTA
106983658 AAAGATAAAT
1 AAAGATAAAT
106983668 ACAA-ATAAAT
1 A-AAGATAAAT
*
106983678 AAAGATAATT
1 AAAGATAAAT
*
106983688 AAAGATAATT
1 AAAGATAAAT
106983698 AAAGATAAAT
1 AAAGATAAAT
106983708 GAAA-ATAAAT
1 -AAAGATAAAT
106983718 CCTCAAATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:106983767 original size:14 final size:13
Alignment explanation
Indices: 106983731--106983768 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
106983721 CAAATTAAAT
106983731 CTAAATAATTATC
1 CTAAATAATTATC
*
106983744 CTTAATAATTATC
1 CTAAATAATTATC
106983757 CTAATATAATTA
1 CTAA-ATAATTA
106983769 AACATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:106988506 original size:13 final size:13
Alignment explanation
Indices: 106988488--106988517 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
106988478 TTCTTGTAAA
106988488 CATTTCACACAAC
1 CATTTCACACAAC
*
106988501 CATTTCATACAAC
1 CATTTCACACAAC
106988514 CATT
1 CATT
106988518 CGTCATCTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.33, G:0.00, T:0.30
Consensus pattern (13 bp):
CATTTCACACAAC
Found at i:106988854 original size:138 final size:138
Alignment explanation
Indices: 106988601--106988918 Score: 447
Period size: 138 Copynumber: 2.3 Consensus size: 138
106988591 TTATCTTTGA
* * * * *
106988601 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCTATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTT
* * * * **
106988666 TCAACCATGGTCTTGTTCATTTCATGTCACGTTGTCATGGTATCTTTCAACCATGGTCTTATTCA
66 TCAACCATGGTATTATTCATTTCATGTCACATTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
106988731 TTTCATGT
131 TTTCATAT
* * * *
106988739 CATGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCGTGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTT
*
106988804 TCAACCATGGTATTATTCTTTTCATGTCACATTGCCATGGTATCTTTCAACCATGGTCTTACACA
66 TCAACCATGGTATTATTCATTTCATGTCACATTGCCATGGTATCTTTCAACCATGGTCTTACACA
106988869 TTTCATAT
131 TTTCATAT
* * * *
106988877 CATGTTGTCATAGTATCTTTCAACCATTGTCTTACACATTTC
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTC
106988919 ATTTCAGAAA
Statistics
Matches: 157, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
138 157 1.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.42
Consensus pattern (138 bp):
CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATCTT
TCAACCATGGTATTATTCATTTCATGTCACATTGCCATGGTATCTTTCAACCATGGTCTTACACA
TTTCATAT
Found at i:106988911 original size:46 final size:46
Alignment explanation
Indices: 106988601--106988920 Score: 399
Period size: 46 Copynumber: 7.0 Consensus size: 46
106988591 TTATCTTTGA
* * * * *
106988601 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
* *
106988647 CATGTTGCTATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* *
106988693 CACGTTGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* **
106988739 CATGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * *
106988785 CATGTTGCCGTGGTATCTTTCAACCATGGTATTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
** ** *
106988831 CACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * * **
106988877 CATGTTGTCATAGTATCTTTCAACCATTGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
106988921 TTCAGAAAGC
Statistics
Matches: 238, Mismatches: 35, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
45 4 0.02
46 234 0.98
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:106990813 original size:30 final size:31
Alignment explanation
Indices: 106990745--106990813 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 31
106990735 AATAATATTA
*
106990745 AAATATCTTATTAAAATATTAATAAAATAAT
1 AAATATCTAATTAAAATATTAATAAAATAAT
**
106990776 ATTTATCTAATT-AAATAATT-ATAAAAT-AT
1 AAATATCTAATTAAAAT-ATTAATAAAATAAT
106990805 CAAATATCT
1 -AAATATCT
106990814 GTAGCATCAC
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
29 2 0.06
30 17 0.55
31 12 0.39
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (31 bp):
AAATATCTAATTAAAATATTAATAAAATAAT
Found at i:106996272 original size:34 final size:34
Alignment explanation
Indices: 106996224--106996325 Score: 154
Period size: 34 Copynumber: 3.1 Consensus size: 34
106996214 ACGTGTGTTC
*
106996224 TTTTTTTTTTTTAAGTTGATTGTGTCAAAGTTTG
1 TTTTTTTTTGTTAAGTTGATTGTGTCAAAGTTTG
106996258 TTTTTTTTTGTTAAGTTGATTGTGTCAAA-TTT-
1 TTTTTTTTTGTTAAGTTGATTGTGTCAAAGTTTG
* * *
106996290 TATTTTTTTGTTAAGTAGATTATGTCAAAGTTTG
1 TTTTTTTTTGTTAAGTTGATTGTGTCAAAGTTTG
106996324 TT
1 TT
106996326 CCGGTTTTTA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
32 26 0.43
33 6 0.10
34 29 0.48
ACGTcount: A:0.21, C:0.03, G:0.17, T:0.60
Consensus pattern (34 bp):
TTTTTTTTTGTTAAGTTGATTGTGTCAAAGTTTG
Found at i:107001656 original size:40 final size:41
Alignment explanation
Indices: 107001607--107001702 Score: 131
Period size: 41 Copynumber: 2.4 Consensus size: 41
107001597 CGTTTTAACA
* *
107001607 AAAATGCCGCTAAAAACT-GAGCAATAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACTAGAGCAATAGCGACGCTTTTGGT
* * * *
107001647 AGAACGCCGCTGAAGACTAGAGCATTAGCGACGCTTTTGGT
1 AAAACGCCGCTAAAAACTAGAGCAATAGCGACGCTTTTGGT
107001688 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
107001703 GTTATATAAC
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
40 14 0.30
41 32 0.70
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACTAGAGCAATAGCGACGCTTTTGGT
Found at i:107002279 original size:24 final size:24
Alignment explanation
Indices: 107002252--107002300 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
107002242 CATATATTTA
107002252 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
107002276 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
107002300 T
1 T
107002301 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:107002937 original size:10 final size:10
Alignment explanation
Indices: 107002915--107002949 Score: 56
Period size: 9 Copynumber: 3.7 Consensus size: 10
107002905 AATTTAAAAG
107002915 AAAAAATAG-
1 AAAAAATAGA
107002924 AAAAAATAGA
1 AAAAAATAGA
107002934 AAAAAATA-A
1 AAAAAATAGA
107002943 AAAAAAT
1 AAAAAAT
107002950 TAAAATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (10 bp):
AAAAAATAGA
Found at i:107002953 original size:10 final size:9
Alignment explanation
Indices: 107002915--107002954 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
107002905 AATTTAAAAG
*
107002915 AAAAAATAG
1 AAAAAATAA
107002924 AAAAAATAGA
1 AAAAAATA-A
107002934 AAAAAATAA
1 AAAAAATAA
107002943 AAAAAATTAA
1 AAAAAA-TAA
107002953 AA
1 AA
107002955 TTAAACAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 15 0.54
10 13 0.46
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.12
Consensus pattern (9 bp):
AAAAAATAA
Found at i:107004496 original size:23 final size:23
Alignment explanation
Indices: 107004464--107004507 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
107004454 GCAATCTACT
107004464 GACTAATTGTTTTTGCTTAAGAG
1 GACTAATTGTTTTTGCTTAAGAG
* *
107004487 GACTACTTGTTTTTGTTTAAG
1 GACTAATTGTTTTTGCTTAAG
107004508 CAGATCCATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.09, G:0.20, T:0.48
Consensus pattern (23 bp):
GACTAATTGTTTTTGCTTAAGAG
Found at i:107007173 original size:93 final size:93
Alignment explanation
Indices: 107007045--107007216 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
107007035 GCCCATAAGT
* * * *
107007045 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAATTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
107007110 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * * * *
107007138 GAACTTGGACTCAACTCAACGAGTTCAGATATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
107007203 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
107007217 CAAATATCCC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:107007200 original size:46 final size:46
Alignment explanation
Indices: 107007037--107007213 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
107007027 TGTAACCCGC
***
107007037 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATATTCGCAT
* * * ** * *
107007083 CCATAAATGAATTCAGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT-ATTCGCAT
* *** * * *
107007129 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCAGATATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATATTCGCAT
*
107007176 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
107007214 GCCCAAATAT
Statistics
Matches: 100, Mismatches: 28, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
46 68 0.68
47 32 0.32
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATATTCGCAT
Found at i:107010715 original size:24 final size:24
Alignment explanation
Indices: 107010665--107010720 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
107010655 CCACTTAATT
*
107010665 AATTCAAATGATATTTACTCATTA
1 AATTCAAATGATATTTACTCATAA
*
107010689 AATTCAAATGATATTTCAGT-ATAA
1 AATTCAAATGATATTT-ACTCATAA
107010713 AA-TCAAAT
1 AATTCAAAT
107010721 TATCTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 6 0.21
24 21 0.72
25 2 0.07
ACGTcount: A:0.46, C:0.11, G:0.05, T:0.38
Consensus pattern (24 bp):
AATTCAAATGATATTTACTCATAA
Found at i:107011258 original size:18 final size:17
Alignment explanation
Indices: 107011237--107011270 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
107011227 TTGAATTTTA
*
107011237 TAATTTGAATAACTAGAG
1 TAATTCGAATAA-TAGAG
107011255 TAATTCGAATAATAGA
1 TAATTCGAATAATAGA
107011271 TTGGTGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (17 bp):
TAATTCGAATAATAGAG
Found at i:107011392 original size:20 final size:21
Alignment explanation
Indices: 107011368--107011428 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 21
107011358 AATTAAAAAA
107011368 CAAAATAATTTTTTAAAATTT
1 CAAAATAATTTTTTAAAATTT
* *
107011389 -AAAAT-ATTTATAAAAATTT
1 CAAAATAATTTTTTAAAATTT
107011408 CAAAATTAATATTTTTTAAAA
1 CAAAA-T-A-ATTTTTTAAAA
107011429 AATCTCAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
19 12 0.39
20 9 0.29
21 1 0.03
24 9 0.29
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (21 bp):
CAAAATAATTTTTTAAAATTT
Found at i:107011397 original size:19 final size:21
Alignment explanation
Indices: 107011350--107011413 Score: 61
Period size: 19 Copynumber: 3.4 Consensus size: 21
107011340 TAGAAAATAA
107011350 TTCAAAATAA-TTA-AAAAA-
1 TTCAAAATAATTTATAAAAAT
* *
107011368 --CAAAATAATTTTTTAAAAT
1 TTCAAAATAATTTATAAAAAT
107011387 TT-AAAAT-ATTTATAAAAAT
1 TTCAAAATAATTTATAAAAAT
107011406 TTCAAAAT
1 TTCAAAAT
107011414 TAATATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
16 8 0.22
17 2 0.06
18 4 0.11
19 12 0.33
20 10 0.28
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
TTCAAAATAATTTATAAAAAT
Found at i:107011771 original size:90 final size:91
Alignment explanation
Indices: 107011654--107011834 Score: 294
Period size: 90 Copynumber: 2.0 Consensus size: 91
107011644 TAAAAGAAAA
* *
107011654 AGTTAAAGAAATCTTGAACCTCTAAATATTGAGTAACAGCTAGTGTTAAAAGTGAATAAAG-CTC
1 AGTTAAAGAAATCTTGAACCTCTAAATATTGAATAACAGATAGTGTTAAAAGTGAATAAAGACTC
107011718 AGCTATTATCTACAACAAACAATGGAG
66 -GCTATTATCTACAACAAACAATGGAG
* * *
107011745 AGTT-AAGAAATCTTGAACCTCTAAATATTGAATAACAGATATTTTTAAAAGTGAATAAAGATTC
1 AGTTAAAGAAATCTTGAACCTCTAAATATTGAATAACAGATAGTGTTAAAAGTGAATAAAGACTC
107011809 GCTATTATCTACAACAAACAATGGAG
66 GCTATTATCTACAACAAACAATGGAG
107011835 GAATCACAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
90 78 0.93
91 6 0.07
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (91 bp):
AGTTAAAGAAATCTTGAACCTCTAAATATTGAATAACAGATAGTGTTAAAAGTGAATAAAGACTC
GCTATTATCTACAACAAACAATGGAG
Found at i:107017363 original size:16 final size:16
Alignment explanation
Indices: 107017342--107017374 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
107017332 CCAAAAAGTT
107017342 AGGCTATAACTATGAA
1 AGGCTATAACTATGAA
*
107017358 AGGCTATGACTATGAA
1 AGGCTATAACTATGAA
107017374 A
1 A
107017375 TTCACAATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.24
Consensus pattern (16 bp):
AGGCTATAACTATGAA
Found at i:107018960 original size:39 final size:39
Alignment explanation
Indices: 107018917--107019044 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
107018907 GGTCTTTAAC
** *
107018917 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * *
107018956 CCGGATATATTTCTAGCATATAGCCTGCGGATCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
107018995 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
107019034 CCGGATATTTT
1 CCGGATATTTT
107019045 CAACCTCATA
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:107024051 original size:149 final size:147
Alignment explanation
Indices: 107023795--107024393 Score: 545
Period size: 152 Copynumber: 4.1 Consensus size: 147
107023785 GTACGTTGTT
* * * * * *
107023795 TATATTCACTTTTTTTTGCTACACAAGCAATCCGAAACCATAAATAGAGGA-ATAC--TTTTTTC
1 TATATTCAC-TTTTCTTGCTACATAAGCAAGCCAAAACCATAAACA-AAGACATACATTTTTTTC
* * ** * *
107023857 GTTTTTTTTAATGCTTTTCTTGTTTC-TTTTCGTTTTTCAAATTCTTCATTCAATTCAAGCTCAA
64 -CTTTTTTTAATGATTTTCTTGTTTCTTTTTTATTTTTAAAATTCTTCATTCAATTCAAGTTCAA
*
107023921 GAAACCATACTAAATATATA
128 GAAATCATACTAAATATATA
* * *
107023941 TATATTCACTTTTCTTACTACGTAAGCAAGCCAAAACCATAAACAAAGACATGCCATTTTTTTTC
1 TATATTCACTTTTCTTGCTACATAAGCAAGCCAAAACCATAAACAAAGACAT-ACA-TTTTTTTC
* * *
107024006 CTTTTTTTAATGGTTTTCTTGATTCTTTTTTATTTTTAAAATTCTTCTTTCAATTCAAGTTCAAG
64 CTTTTTTTAATGATTTTCTTGTTTCTTTTTTATTTTTAAAATTCTTCATTCAATTCAAGTTCAAG
*
107024071 AAATCATATTAAATATATATA
129 AAATCATACT-AA-ATATATA
* * * *** * *
107024092 TTTATATTCCCTTTTTTTGCTACACAAGCAAGTTGAAACCATAAACAAAGGCATACATTTTTCTC
1 --TATATTCACTTTTCTTGCTACATAAGCAAGCCAAAACCATAAACAAAGACATACATTTTTTTC
* * * * *
107024157 CTTTTTTTAAATGATTTTCTTGTTTCTTTGTTATTTTTTAGATTCTTCGTTTAATTCAAGTTCAA
64 CTTTTTTT-AATGATTTTCTTGTTTCTTTTTTATTTTTAAAATTCTTCATTCAATTCAAGTTCAA
* *
107024222 GAAATCATGCTAAATATATGTGTT
128 GAAATCATACTAAATATA----TA
* * *
107024246 TATATTCACTTTTCTTGCTACATAAGCAAGCCAAAACCATAAATAAAGGCATAC--TATTTTCTC
1 TATATTCACTTTTCTTGCTACATAAGCAAGCCAAAACCATAAACAAAGACATACATTTTTTTC-C
** *
107024309 TTTTTTTACCG------TTGTTGC-------TTTTT-AAATTCTTCATTCAATTCAAGTTCAAGA
65 TTTTTTTAATGATTTTCTTGTTTCTTTTTTATTTTTAAAATTCTTCATTCAATTCAAGTTCAAGA
*
107024360 AATCATACTATATATATA
130 AATCATACTAAATATATA
107024378 TATATTCACTTTTCTT
1 TATATTCACTTTTCTT
107024394 ATTACACAAG
Statistics
Matches: 379, Mismatches: 58, Indels: 46
0.78 0.12 0.10
Matches are distributed among these distances:
132 17 0.04
136 39 0.10
137 5 0.01
144 9 0.02
145 31 0.08
146 10 0.03
148 22 0.06
149 49 0.13
150 14 0.04
151 32 0.08
152 107 0.28
153 43 0.11
154 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.45
Consensus pattern (147 bp):
TATATTCACTTTTCTTGCTACATAAGCAAGCCAAAACCATAAACAAAGACATACATTTTTTTCCT
TTTTTTAATGATTTTCTTGTTTCTTTTTTATTTTTAAAATTCTTCATTCAATTCAAGTTCAAGAA
ATCATACTAAATATATA
Found at i:107024217 original size:152 final size:149
Alignment explanation
Indices: 107023793--107024316 Score: 576
Period size: 152 Copynumber: 3.5 Consensus size: 149
107023783 ACGTACGTTG
* * * * * *
107023793 TTTATATTCACTTTTTTTTGCTACACAAGCAATCCGAAACCATAAATAGAGGAATACTTTTT-TC
1 TTTATATTCAC-TTTTCTTGCTACACAAGCAAGCCAAAACCATAAACAAAGGCATACTTTTTCTC
* * * ** * * *
107023857 GTTTTTTTTAATGCTTTTCTTGTTTCTTTTCGTTTTTCAAATTCTTCATTCAATTCAAGCTCAAG
65 CTTTTTTTAAATGATTTTCTTGTTTCTTTTTATTTTTAAAATTCTTC-TTTAATTCAAGTTCAAG
*
107023922 AAACCATACT-AA-ATATATA
129 AAATCATACTAAATATATATA
* ** * * *
107023941 --TATATTCACTTTTCTTACTACGTAAGCAAGCCAAAACCATAAACAAAGACATGCCATTTTTTT
1 TTTATATTCACTTTTCTTGCTACACAAGCAAGCCAAAACCATAAACAAAGGCAT---ACTTTTTC
* *
107024004 TCCTTTTTTT-AATGGTTTTCTTGATTCTTTTTTATTTTTAAAATTCTTCTTTCAATTCAAGTTC
63 TCCTTTTTTTAAATGATTTTCTTGTTTC-TTTTTATTTTTAAAATTCTTCTTT-AATTCAAGTTC
*
107024068 AAGAAATCATATTAAATATATATA
126 AAGAAATCATACTAAATATATATA
* * ***
107024092 TTTATATTCCCTTTTTTTGCTACACAAGCAAGTTGAAACCATAAACAAAGGCATACATTTTTCTC
1 TTTATATTCACTTTTCTTGCTACACAAGCAAGCCAAAACCATAAACAAAGGCATAC-TTTTTCTC
* *
107024157 CTTTTTTTAAATGATTTTCTTGTTTCTTTGTTATTTTTTAGATTCTTCGTTTAATTCAAGTTCAA
65 CTTTTTTTAAATGATTTTCTTGTTTCTTT-TTATTTTTAAAATTCTTC-TTTAATTCAAGTTCAA
* * *
107024222 GAAATCATGCTAAATATATGTG
128 GAAATCATACTAAATATATATA
* *
107024244 TTTATATTCACTTTTCTTGCTACATAAGCAAGCCAAAACCATAAATAAAGGCATACTATTTTCT-
1 TTTATATTCACTTTTCTTGCTACACAAGCAAGCCAAAACCATAAACAAAGGCATACT-TTTTCTC
107024308 CTTTTTTTA
65 CTTTTTTTA
107024317 CCGTTGTTGC
Statistics
Matches: 314, Mismatches: 47, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
145 33 0.11
146 9 0.03
148 23 0.07
149 48 0.15
150 3 0.01
151 35 0.11
152 117 0.37
153 46 0.15
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.45
Consensus pattern (149 bp):
TTTATATTCACTTTTCTTGCTACACAAGCAAGCCAAAACCATAAACAAAGGCATACTTTTTCTCC
TTTTTTTAAATGATTTTCTTGTTTCTTTTTATTTTTAAAATTCTTCTTTAATTCAAGTTCAAGAA
ATCATACTAAATATATATA
Found at i:107025049 original size:22 final size:21
Alignment explanation
Indices: 107024998--107025049 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
107024988 ATTTAATCAC
*
107024998 TAAATTATTAATTTTTCCAATT
1 TAAA-TATTAATTTTTCCAAAT
** *
107025020 TAGTTATTAAATTTTTCGAAAT
1 TAAATATT-AATTTTTCCAAAT
107025042 TAAATATT
1 TAAATATT
107025050 TTGATCACTC
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (21 bp):
TAAATATTAATTTTTCCAAAT
Found at i:107027215 original size:37 final size:37
Alignment explanation
Indices: 107027043--107027203 Score: 243
Period size: 37 Copynumber: 4.3 Consensus size: 37
107027033 AACAATTTTT
*
107027043 ATTCGATTATGAATATACCTTTCTTGTTTGTATTCTC
1 ATTCTATTATGAATATACCTTTCTTGTTTGTATTCTC
* *
107027080 ATTCGATTATGAATATACCTTTCTTGTTAGTATTCTC
1 ATTCTATTATGAATATACCTTTCTTGTTTGTATTCTC
* * *
107027117 ATTCTATT-TCGAACATACCTTTCTTGCTTGTATTTTC
1 ATTCTATTAT-GAATATACCTTTCTTGTTTGTATTCTC
107027154 ATTCTATTATGAATATACCTTTCTTGTTTGTATTCTC
1 ATTCTATTATGAATATACCTTTCTTGTTTGTATTCTC
107027191 ATTCTATTGATGA
1 ATTCTATT-ATGA
107027204 TTAATGTTTC
Statistics
Matches: 112, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
36 1 0.01
37 106 0.95
38 5 0.04
ACGTcount: A:0.22, C:0.17, G:0.10, T:0.51
Consensus pattern (37 bp):
ATTCTATTATGAATATACCTTTCTTGTTTGTATTCTC
Found at i:107028867 original size:17 final size:18
Alignment explanation
Indices: 107028836--107028869 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
107028826 AATTTAACTT
107028836 TAATTAAATTATTTAAAA
1 TAATTAAATTATTTAAAA
*
107028854 TAATT-AATTTTTTAAA
1 TAATTAAATTATTTAAA
107028870 TTATAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTAAATTATTTAAAA
Found at i:107029184 original size:36 final size:37
Alignment explanation
Indices: 107029143--107029222 Score: 94
Period size: 36 Copynumber: 2.2 Consensus size: 37
107029133 TTCGAGGTTT
*
107029143 AAGTTTAAAG-TTCAAGGGTTT-AGGGTTATGGGTTAC
1 AAGTTTAAAGATTC-AGGGTTTAAGGGTTAGGGGTTAC
* * *
107029179 AAGTTT-AGGATTCATGGTTTAAGGGTTCGGGGTTAC
1 AAGTTTAAAGATTCAGGGTTTAAGGGTTAGGGGTTAC
107029215 AAGTTTAA
1 AAGTTTAA
107029223 GGTTTTATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
35 8 0.22
36 28 0.76
37 1 0.03
ACGTcount: A:0.28, C:0.06, G:0.30, T:0.36
Consensus pattern (37 bp):
AAGTTTAAAGATTCAGGGTTTAAGGGTTAGGGGTTAC
Found at i:107034974 original size:10 final size:10
Alignment explanation
Indices: 107034961--107035010 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
107034951 TAATTTTAAG
107034961 ATTTAT-TTT
1 ATTTATCTTT
107034970 CATTTATCTTT
1 -ATTTATCTTT
*
107034981 AATTATCTTT
1 ATTTATCTTT
107034991 ATTTAT-TTGT
1 ATTTATCTT-T
107035001 ATTTATCTTT
1 ATTTATCTTT
107035011 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:107035324 original size:15 final size:15
Alignment explanation
Indices: 107035301--107035332 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
107035291 TTCATCGCTT
107035301 CTCCACATTACGGGG
1 CTCCACATTACGGGG
*
107035316 CTCCGCATTACGGGG
1 CTCCACATTACGGGG
107035331 CT
1 CT
107035333 GACGCTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.34, G:0.28, T:0.22
Consensus pattern (15 bp):
CTCCACATTACGGGG
Found at i:107039225 original size:25 final size:25
Alignment explanation
Indices: 107039197--107039245 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
107039187 CAGTTTTGAC
107039197 ATTTTGCT-AAGCTTGCAACTTGCAA
1 ATTTTGCTGAA-CTTGCAACTTGCAA
*
107039222 ATTTTGCTGAACTTGCAGCTTGCA
1 ATTTTGCTGAACTTGCAACTTGCA
107039246 CATTGGAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (25 bp):
ATTTTGCTGAACTTGCAACTTGCAA
Found at i:107044709 original size:3 final size:3
Alignment explanation
Indices: 107044701--107044981 Score: 125
Period size: 3 Copynumber: 94.3 Consensus size: 3
107044691 TTTGGCTACT
* * * * *
107044701 TTA TTA TTA -AA TTAA TTA TTT TTA ATA TTA TTA TTA CTA TTT TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** ** * *
107044746 TTA TTA AAA TTA TTA TTA TTA TTA TTA ACA -TA TTA TTA TTT TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * *
107044793 TTA TTA TTA TTA ACA -TA TTA TTA TTC TTT TTA ATA -TA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * ** *
107044838 TCC TT- TT- TTA -TA TTA TTA TTT TTA TTA TTA ACA TGTA TTA TTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * ** *
107044881 TTA TTAA TGTA TTG TTA TTC TCTA TTA TTA TTA TTG TTA CCA -TA TCA
1 TTA TT-A T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
107044928 TTA TTA TTAA GGTA TTA TT- TTCA TTA TTC TCTA TT- TTA TTA TTA TTC
1 TTA TTA TT-A -TTA TTA TTA TT-A TTA TTA T-TA TTA TTA TTA TTA TTA
107044975 TTA TTA T
1 TTA TTA T
107044982 CATTTTTTAT
Statistics
Matches: 204, Mismatches: 55, Indels: 38
0.69 0.19 0.13
Matches are distributed among these distances:
2 17 0.08
3 168 0.82
4 17 0.08
5 2 0.01
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:107044978 original size:24 final size:23
Alignment explanation
Indices: 107044940--107044993 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
107044930 ATTATTAAGG
*
107044940 TATTATTTTCATTATTCTCTATTT
1 TATTATTTTCATTATTATC-ATTT
107044964 TATTATTATTC-TTATTATCATTT
1 TATTATT-TTCATTATTATCATTT
107044987 T-TTATTT
1 TATTATTT
107044994 GTTTGTTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 1 0.04
22 5 0.18
23 5 0.18
24 14 0.50
25 3 0.11
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (23 bp):
TATTATTTTCATTATTATCATTT
Found at i:107050596 original size:7 final size:7
Alignment explanation
Indices: 107050584--107050622 Score: 60
Period size: 7 Copynumber: 5.3 Consensus size: 7
107050574 GATGTGAATA
107050584 ATAAAAT
1 ATAAAAT
107050591 ATAAAAT
1 ATAAAAT
107050598 ATAAAAT
1 ATAAAAT
107050605 ATTAAAAT
1 A-TAAAAT
107050613 ATCAAAAT
1 AT-AAAAT
107050621 AT
1 AT
107050623 TAGAATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 16 0.53
8 14 0.47
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (7 bp):
ATAAAAT
Found at i:107050603 original size:14 final size:14
Alignment explanation
Indices: 107050584--107050622 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 14
107050574 GATGTGAATA
107050584 ATAAAATATAAAAT
1 ATAAAATATAAAAT
107050598 ATAAAATATTAAAAT
1 ATAAAATA-TAAAAT
107050613 ATCAAAATAT
1 AT-AAAATAT
107050623 TAGAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.35
15 9 0.39
16 6 0.26
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (14 bp):
ATAAAATATAAAAT
Found at i:107050610 original size:8 final size:8
Alignment explanation
Indices: 107050580--107050629 Score: 59
Period size: 8 Copynumber: 6.5 Consensus size: 8
107050570 TAATGATGTG
*
107050580 AATAATAA
1 AATATTAA
107050588 AATA-TAA
1 AATATTAA
107050595 AATA-TAA
1 AATATTAA
107050602 AATATTAA
1 AATATTAA
*
107050610 AATATCAA
1 AATATTAA
*
107050618 AATATTAG
1 AATATTAA
107050626 AATA
1 AATA
107050630 ATAATAATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
7 14 0.37
8 24 0.63
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (8 bp):
AATATTAA
Found at i:107050621 original size:16 final size:15
Alignment explanation
Indices: 107050584--107050629 Score: 67
Period size: 16 Copynumber: 3.1 Consensus size: 15
107050574 GATGTGAATA
107050584 ATAAAATA-TAAAAT
1 ATAAAATATTAAAAT
107050598 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
107050613 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
107050629 A
1 A
107050630 ATAATAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 8 0.28
15 8 0.28
16 13 0.45
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:107050876 original size:29 final size:29
Alignment explanation
Indices: 107050836--107050902 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
107050826 TATAGTTAAG
*
107050836 ATATATACATAAGATAACATGTAAA-ATAT
1 ATATATAAATAAGATAACAT-TAAAGATAT
* *
107050865 ATATATAAATAATATAATATTAAAGATAT
1 ATATATAAATAAGATAACATTAAAGATAT
*
107050894 ATACATAAA
1 ATATATAAA
107050903 ATAGTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (29 bp):
ATATATAAATAAGATAACATTAAAGATAT
Found at i:107050893 original size:25 final size:25
Alignment explanation
Indices: 107050777--107050998 Score: 124
Period size: 25 Copynumber: 9.0 Consensus size: 25
107050767 TAAATACGTG
* *
107050777 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
107050802 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
107050827 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * *
107050849 ATAACATGTAAAATATATATATAAATAAT
1 ATAATAT-T--AA-AGATATATACATAAT
*
107050878 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * *
107050903 ATAGTATAAAATATATATATACATAAT
1 ATAATAT-TAA-AGATATATACATAAT
* *
107050930 ATAGA-ATTTAA-A-ATATACCTAAT
1 ATA-ATATTAAAGATATATACATAAT
* *
107050953 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
*
107050975 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
107050998 A
1 A
107050999 ACAAAAAAGG
Statistics
Matches: 153, Mismatches: 29, Indels: 32
0.71 0.14 0.15
Matches are distributed among these distances:
21 4 0.03
22 27 0.18
23 28 0.18
24 8 0.05
25 43 0.28
26 5 0.03
27 18 0.12
28 2 0.01
29 18 0.12
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.34
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:107050945 original size:27 final size:27
Alignment explanation
Indices: 107050783--107050946 Score: 93
Period size: 27 Copynumber: 6.4 Consensus size: 27
107050773 CGTGATAATA
*
107050783 TTAAAA-ATATGTACATAATATAG--T
1 TTAAAATATATATACATAATATAGAAT
*
107050807 GTTAAAA-ATACATACATAATATAG---
1 -TTAAAATATATATACATAATATAGAAT
* *
107050831 TT--AAGATATATACATAAGATA-ACAT
1 TTAAAATATATATACATAATATAGA-AT
* * *
107050856 GTAAAATATATATATA-AATAATATAAT
1 TTAAAATATATATACATAAT-ATAGAAT
* * *
107050883 ATT-AAAGATATATACATAAAATAGTA-
1 -TTAAAATATATATACATAATATAGAAT
*
107050909 TAAAATATATATATACATAATATAGAAT
1 TTAAA-ATATATATACATAATATAGAAT
107050937 TTAAAATATA
1 TTAAAATATA
107050947 CCTAATATAT
Statistics
Matches: 106, Mismatches: 19, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
21 2 0.02
22 14 0.13
23 2 0.02
25 23 0.22
26 4 0.04
27 53 0.50
28 8 0.08
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (27 bp):
TTAAAATATATATACATAATATAGAAT
Found at i:107051521 original size:30 final size:30
Alignment explanation
Indices: 107051485--107051629 Score: 195
Period size: 30 Copynumber: 4.8 Consensus size: 30
107051475 TAGGTACAAG
* *
107051485 TGGTGGTGGAGCAA-GTATGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTATGGCTAGTGGAGT
107051515 TGGTGGTGGAAAAGG-AGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTA-TGGCTAGTGGAGT
* * *
107051545 TGGTGGTAGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTATGGCTAGTGGAGT
*
107051575 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTATGGCTAGTGGAGT
*
107051605 TGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTATGGCTAGT
107051630 TGAGAAAAGT
Statistics
Matches: 105, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
29 3 0.03
30 102 0.97
ACGTcount: A:0.21, C:0.03, G:0.49, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTATGGCTAGTGGAGT
Found at i:107051578 original size:60 final size:60
Alignment explanation
Indices: 107051506--107051629 Score: 221
Period size: 60 Copynumber: 2.1 Consensus size: 60
107051496 CAAGTATGGT
*
107051506 TAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTAGAGAAGGTGTGGC
1 TAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTAGAAAAGGTGTGGC
* *
107051566 TAGTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGTGTGGC
1 TAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTAGAAAAGGTGTGGC
107051626 TAGT
1 TAGT
107051630 TGAGAAAAGT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.21, C:0.03, G:0.49, T:0.27
Consensus pattern (60 bp):
TAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGTGGAGTTGGTGGTAGAAAAGGTGTGGC
Found at i:107052436 original size:75 final size:73
Alignment explanation
Indices: 107052338--107052619 Score: 367
Period size: 75 Copynumber: 3.8 Consensus size: 73
107052328 CGACATGTAA
* *
107052338 ACCCAAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTAAAAAGCAGAAATTGAAAA-CGC
1 ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAGCAGAAATTGAAAATAG-
107052402 CTCAGCGTGTG
65 CTCAGC--GTG
* * *
107052413 ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGAAGAAATTGAAAATAGC
1 ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAGCAGAAATTGAAAATAGC
107052478 TCAGCGTG
66 TCAGCGTG
* * *
107052486 A-GC-AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAATAG
1 ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAAAGCAGAAATTGAAAATAG
107052549 CTCAGCACGTG
65 CTCAG--CGTG
* * *
107052560 AGCAAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAA-CAGAAATT-AAAA
1 ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAAAAGCAGAAATTGAAAA
107052620 GGCTCAACTC
Statistics
Matches: 187, Mismatches: 13, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
71 31 0.17
72 32 0.17
73 4 0.02
74 9 0.05
75 76 0.41
76 35 0.19
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (73 bp):
ACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAGCAGAAATTGAAAATAGC
TCAGCGTG
Found at i:107052576 original size:147 final size:145
Alignment explanation
Indices: 107052343--107052619 Score: 414
Period size: 147 Copynumber: 1.9 Consensus size: 145
107052333 TGTAAACCCA
* *
107052343 AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTAAAAAGCAGAAATTGAAAACGCCTCAGC
1 AGGCTCAACTCACATCTCACAATATGAGTTGATTTTTAAAAAGCAGAAATTGAAAAAGCCTCAGC
** **
107052408 GTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGA-AGAAATTGAA
66 ACGTGACCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-ACAGAAATT-AA
107052472 AATAGCTCAGCGTGAGC
129 AATAGCTCAGCGTGAGC
* *
107052489 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAATAG-CTCA
1 AGGCTCAACTCACATCTCACAATATGAGTTGA-TTTTTAAAAAGCAGAAATTGAAAA-AGCCTCA
* *
107052553 GCACGTGAGCAAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
64 GCACGTGACCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
107052618 AA
129 AA
107052620 GGCTCAACTC
Statistics
Matches: 118, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
146 35 0.30
147 82 0.69
148 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (145 bp):
AGGCTCAACTCACATCTCACAATATGAGTTGATTTTTAAAAAGCAGAAATTGAAAAAGCCTCAGC
ACGTGACCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
TAGCTCAGCGTGAGC
Found at i:107052669 original size:54 final size:54
Alignment explanation
Indices: 107052563--107052673 Score: 177
Period size: 54 Copynumber: 2.1 Consensus size: 54
107052553 GCACGTGAGC
* *
107052563 AAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTA
1 AAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTA
* **
107052617 AAAGGCTCAACTCACCTCTCTCAATATGAGTTGATTTTTGAAAAGTAAAAATTA
1 AAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTA
107052671 AAA
1 AAA
107052674 ATAGAGTTTG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (54 bp):
AAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTA
Found at i:107052782 original size:15 final size:15
Alignment explanation
Indices: 107052759--107052791 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
107052749 TTGATTTTTG
*
107052759 AAAAGCAGAAATTGA
1 AAAAACAGAAATTGA
107052774 AAAAACAGAAATTGA
1 AAAAACAGAAATTGA
107052789 AAA
1 AAA
107052792 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.67, C:0.06, G:0.15, T:0.12
Consensus pattern (15 bp):
AAAAACAGAAATTGA
Found at i:107052965 original size:71 final size:73
Alignment explanation
Indices: 107052774--107054289 Score: 1179
Period size: 71 Copynumber: 20.0 Consensus size: 73
107052764 CAGAAATTGA
*
107052774 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
107052839 GATTTTTTTTTG
66 GA----TTTTTG
*
107052851 AAAAAAAACAAAAATTGAAATT-CCTCAGCGTG-CC-GAGGCTCAACTCA-CT-TCGCAATATGA
1 ---AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
107052911 GTTGATTTTTG
63 GTTGATTTTTG
*
107052922 AAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
107052987 GA-TTTTG
66 GATTTTTG
* * * * *
107052994 ACAAACAGAAATAGAAATTAAAATACCTCAGCGTGAGCC-GAGGCTCAACTCACTTCTTGCAATA
1 AAAAACAGAAATTGAAA-T----TACCTCAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
107053058 TGA-TTGATTTTTTG
60 TGAGTTGA-TTTTTG
* * * * *
107053072 ---AATAGAAATTGCAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
107053134 GATTTTTG
66 GATTTTTG
107053142 -AAAACA-ATAATTGAAACACAAAATTGAAATACCTCAGCGTG-CC-GAGGCTCAACTCACCTCT
1 AAAAACAGA-AATTG-------AAA-T----TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
107053203 CGCAATATGAGTTGATTTTTG
53 CGCAATATGAGTTGATTTTTG
* *
107053224 AAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
107053289 GATTTTTTTTTT
66 GA----TTTTTG
** * ** *** * *
107053301 ACGAACAGAAATTGAAA--AACAGAAATTGAAAAGCCTCAGCATGTG-TCGAGGCTCAACTCACT
1 AAAAACAGAAATTGAAATTACCTCAGCGTG----TCCT--G-A-G-GCTC-A-ACTC-A--C-CT
107053363 CTCGCAATATGAGTTGATTTTTG
51 CTCGCAATATGAGTTGATTTTTG
* *
107053386 ACAAACAGAAATTGAAATTA-CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
107053450 GATTTTTG
66 GATTTTTG
* * *
107053458 AAAAA-AGAAATTAAAAATACCT-AACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
107053521 GATTTTTTT
66 GA-TTTTTG
* *
107053530 ACGAAACAGAAATTGAAAAAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACC
1 A-AAAACAGAAATT------GAAATT------ACCTCAGC--GTG-TCCTGAGGCTCAACTCACC
107053594 T-TCGCAATATGAGTTGATTTTTG
50 TCTCGCAATATGAGTTGATTTTTG
* *
107053617 ACAAACA-AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
107053681 GATTTTTG
66 GATTTTTG
*
107053689 -AAAACAGAAATT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
107053752 GATTTTTTTT
66 GA--TTTTTG
** ** ** * * * * *
107053762 ACGAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAG-CATGTGAGC-CGAGGCTCAACTCAC
1 AAAAACAGAAATTG--AA-ATTACCT---CAG-CGT--GTCCTGAG-GCTC-A---AC---TCAC
*
107053825 CTCTCGCAATATGAGTTAATTTTTG
49 CTCTCGCAATATGAGTTGATTTTTG
* *
107053850 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCA-C-CTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
107053913 GATTTTTG
66 GATTTTTG
*
107053921 AAAAA-AGAAATT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
107053984 GATTTTTTTT
66 GA--TTTTTG
** ** ** * * * ** **
107053994 ACGAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAG-CATGTGAGCGAGGCTCAACTCACCT
1 AAAAACAGAAATTG--AA-ATTACCT---CAG-CGT--GTC--CTGAG-G-CTCAA--CTCACCT
107054058 CTCGCAATATGAGTT-A-TTTTG
51 CTCGCAATATGAGTTGATTTTTG
* *
107054079 ACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
107054144 GA-TTTTG
66 GATTTTTG
107054151 -AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT-GCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
107054214 GA-TTTTG
66 GATTTTTG
* * * * * *
107054221 -AAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCATCT-TCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
107054284 GATTTT
66 GATTTT
107054290 CCTTGAAAAG
Statistics
Matches: 1181, Mismatches: 128, Indels: 263
0.75 0.08 0.17
Matches are distributed among these distances:
68 18 0.02
69 43 0.04
70 130 0.11
71 281 0.24
72 103 0.09
73 79 0.07
74 26 0.02
75 36 0.03
76 14 0.01
77 76 0.06
78 20 0.02
79 28 0.02
80 27 0.02
81 7 0.01
82 51 0.04
83 23 0.02
84 18 0.02
85 53 0.04
86 17 0.01
87 11 0.01
88 36 0.03
89 60 0.05
90 24 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (73 bp):
AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTG
Found at i:107053323 original size:14 final size:14
Alignment explanation
Indices: 107053304--107053332 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
107053294 TTTTTTTACG
107053304 AACAGAAATTGAAA
1 AACAGAAATTGAAA
107053318 AACAGAAATTGAAA
1 AACAGAAATTGAAA
107053332 A
1 A
107053333 GCCTCAGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:107053643 original size:231 final size:231
Alignment explanation
Indices: 107052774--107054219 Score: 2023
Period size: 232 Copynumber: 6.3 Consensus size: 231
107052764 CAGAAATTGA
107052774 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAA-AGAAATT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
** * **
107052839 GATTTTTTTTTG---A-AAA---AAAACAAAAATTG-AAATTCCTCAGC--GTGCCGAGGCTCAA
64 GATTTTTTTACGAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTGCCGAGGCTCAA
* * *
107052894 CTCA-CT-TCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCATGTCCTG
129 CTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCG
107052957 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTG
194 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * *
107052994 ACAAACAGAAATAGAAATTAAAATACCTCAGCGTGAGCC-GAGGCTCAACTCACTTCTTGCAATA
1 ----A-A-AAA-AGAAATTAAAATACCTCAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
* * *
107053058 TGA-TTGA-TTTTTT--GAATAGAAATTG----C---AATT------ACCTCAACATGTCCCGAG
58 TGAGTTGATTTTTTTACGAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTGCCGAG
*
107053106 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAATAATTGAAACACAAAATTGAAA
123 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG---AC--------AAACA-GAAATTGAAA
107053171 -TACCTCAGCGTG--CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
176 TTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
107053224 AAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAA-AGAAATT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
107053289 GATTTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAG-CCTCAGCATGTGTCGAGGC
64 GA---TTTTTTTACGAACAGAAATTG-AAAACAGAAATTGAAAAGACCTCAGCATGTGCCGAGGC
107053353 TCAACTCA-CTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTA-CTCAGCGTGT
125 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
107053416 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
190 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
107053458 AAAAAAGAAATTAAAAATACCT-AACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAAAAGAAATT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
107053522 ATTTTTTTACGAAACAGAAATTGAAAA-AGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTC
65 ATTTTTTTACG-AACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGT--GCCGAGGCTC
107053586 AACTCACCT-TCGCAATATGAGTTGATTTTTGACAAACA-AAATTGAAATTACCTCAGCGTGTCC
127 AACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCC
107053649 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
192 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
107053689 AAAACAGAAATTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAAAAAGAAATTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
107053754 TTTTTTTTACGAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCA
66 -TTTTTTTACGAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGT--GCCGAGGCTCA
*
107053819 ACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCC
128 ACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCC
107053884 GAGGCTCAACTCA-C-CTCGCAATATGAGTTGATTTTTG
193 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
107053921 AAAAAAGAAATTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAAAAAGAAATTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
107053986 TTTTTTTTACGAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCGAGGCTCAA
66 -TTTTTTTACGAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTG-CCGAGGCTCAA
107054051 CTCACCTCTCGCAATATGAGTT-A-TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCG
129 CTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCG
107054114 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTG
194 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
107054151 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT-GCAATATGAGTTG
1 AAAAAAGAAATT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
107054215 ATTTT
65 ATTTT
107054220 GAAAACAAAA
Statistics
Matches: 1125, Mismatches: 29, Indels: 131
0.88 0.02 0.10
Matches are distributed among these distances:
216 6 0.01
218 17 0.02
219 2 0.00
220 22 0.02
221 5 0.00
223 7 0.01
224 19 0.02
225 89 0.08
226 17 0.02
228 13 0.01
229 115 0.10
230 76 0.07
231 266 0.24
232 277 0.25
233 53 0.05
234 85 0.08
237 1 0.00
240 4 0.00
241 2 0.00
244 25 0.02
245 24 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (231 bp):
AAAAAAGAAATTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTACGAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTGCCGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
Found at i:107053707 original size:463 final size:464
Alignment explanation
Indices: 107052775--107054219 Score: 2097
Period size: 463 Copynumber: 3.2 Consensus size: 464
107052765 AGAAATTGAA
107052775 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* **
107052840 ATTTTTTTTT-------GAAA---AAAAACAAAAATTGAAATTCCTCAGC--GTGCCGAGGCTCA
66 ATTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGCCTCAGCATGTGCCGAGGCTCA
* * *
107052893 ACTCACT-TCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCATGTCCTG
131 ACTCACTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCG
107052957 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAATAGAAATTAAAATACC
196 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG----A-A-AAA-AGAAATTAAAATACC
* * * *
107053021 TCAGCGTGAGCC-GAGGCTCAACTCACTTCTTGCAATATGA-TTGA-TTTTTT--GAATAGAAAT
254 TCAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACGAACAGAAAT
* * *
107053081 T------GCAATT------ACCTCAACATGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAG
318 TGAAAAAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
107053132 TTGATTTTTGA-AAACAATAATTGAAACACAAAATTGAAATACCTCAGCGTG--CCGAGGCTCAA
383 TTGATTTTTGACAAACAA-AATTG-------AAA-T----TACCTCAGCGTGTCCCGAGGCTCAA
107053194 CTCACCTCTCGCAATATGAGTTGATTTTTG
435 CTCACCTCTCGCAATATGAGTTGATTTTTG
*
107053224 AAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
107053289 GATTTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGCCTCAGCATGTGTCGAGGCT
65 GA-TTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGCCTCAGCATGTGCCGAGGCT
107053354 CAACTCACTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTA-CTCAGCGTGTCC
129 CAACTCACTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCC
*
107053418 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAGAAATTAAAAATACCT-AA
194 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAGAAATT-AAAATACCTCAG
107053482 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACGAAACAGAAATTGAA
258 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACG-AACAGAAATTGAA
107053547 AAAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCT-TCGCAATATGAGTTGA
322 AAAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
107053611 TTTTTGACAAACAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
387 TTTTTGACAAACAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
107053676 GAGTTGATTTTTG
452 GAGTTGATTTTTG
107053689 AAAACAGAAATT-AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
107053753 A-TTTTTTTTACGAACAGAAATTG-AAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGC
66 ATTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAG-CCTCAGCATGT--GCCGAGGC
*
107053816 TCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
128 TCAACTCA-CTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
107053881 CCCGAGGCTCAACTCA-C-CTCGCAATATGAGTTGATTTTTGAAAAAAGAAATTAAAATACCTCA
192 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAGAAATTAAAATACCTCA
107053944 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGA
257 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTACGAACAGAAATTGA
107054009 AAACAGAAATTGAAAAGACCTCAGCATGTGAG-CGAGGCTCAACTCACCTCTCGCAATATGAGTT
321 AAA-AGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
107054073 -A-TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
385 GATTTTTGACAAACA-AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
107054136 TATGAGTTGA-TTTTG
449 TATGAGTTGATTTTTG
*
107054151 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT-GCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
107054215 ATTTT
66 ATTTT
107054220 GAAAACAAAA
Statistics
Matches: 924, Mismatches: 20, Indels: 89
0.89 0.02 0.09
Matches are distributed among these distances:
450 65 0.07
451 9 0.01
456 2 0.00
457 38 0.04
458 20 0.02
459 7 0.01
460 19 0.02
461 57 0.06
462 61 0.07
463 352 0.38
464 155 0.17
465 67 0.07
467 1 0.00
468 8 0.01
474 11 0.01
475 28 0.03
476 24 0.03
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (464 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGCCTCAGCATGTGCCGAGGCTCA
ACTCACTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAGAAATTAAAATACCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACGAACAGAAATTGAAAAAG
AAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGACAAACAAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTG
Found at i:107053783 original size:13 final size:13
Alignment explanation
Indices: 107053765--107053792 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
107053755 TTTTTTTACG
107053765 AACAGAAATTGAA
1 AACAGAAATTGAA
107053778 AACAGAAATTGAA
1 AACAGAAATTGAA
107053791 AA
1 AA
107053793 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (13 bp):
AACAGAAATTGAA
Found at i:107054015 original size:13 final size:13
Alignment explanation
Indices: 107053997--107054024 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
107053987 TTTTTTTACG
107053997 AACAGAAATTGAA
1 AACAGAAATTGAA
107054010 AACAGAAATTGAA
1 AACAGAAATTGAA
107054023 AA
1 AA
107054025 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (13 bp):
AACAGAAATTGAA
Found at i:107054067 original size:89 final size:86
Alignment explanation
Indices: 107053918--107054077 Score: 241
Period size: 89 Copynumber: 1.8 Consensus size: 86
107053908 GAGTTGATTT
* *
107053918 TTGAAAAAAGAAATTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGAAAAAAGAAATTAAAAGACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
107053983 TGATTTTTTTTACGAACAGAAA
66 T-ATTTTTTTTACGAACAGAAA
* *
107054005 TTGAAAACAGAAATTGAAAAGACCTCAGCATGTGAGC-GAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAAAGAAATT-AAAAGACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATG
107054069 AGTTATTTT
63 AGTTATTTT
107054078 GACAAACAGA
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
87 14 0.21
88 17 0.26
89 31 0.47
90 4 0.06
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (86 bp):
TTGAAAAAAGAAATTAAAAGACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TATTTTTTTTACGAACAGAAA
Found at i:107054219 original size:70 final size:71
Alignment explanation
Indices: 107054005--107054289 Score: 416
Period size: 70 Copynumber: 4.0 Consensus size: 71
107053995 CGAACAGAAA
** **
107054005 TTGAAAACAGAAATTGAAAAGACCTCAGCATGTGAGC-GAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAACAGAAATTGAAATTACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
107054069 AGTT-ATT
64 AGTTGATT
*
107054076 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
107054141 GTTGATT
65 GTTGATT
107054148 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT-GCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
107054212 TTGATT
66 TTGATT
* * * * * *
107054218 TTGAAAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCATCT-TCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
107054282 TTGATT
66 TTGATT
107054288 TT
1 TT
107054290 CCTTGAAAAG
Statistics
Matches: 199, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
69 1 0.01
70 84 0.42
71 84 0.42
72 30 0.15
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (71 bp):
TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATT
Found at i:107054261 original size:141 final size:141
Alignment explanation
Indices: 107054005--107054289 Score: 414
Period size: 141 Copynumber: 2.0 Consensus size: 141
107053995 CGAACAGAAA
*
107054005 TTGAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAGAAATTGAAAAGACCTCAGCA-GTGACCGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
107054070 GTTATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
65 GTTATTTTGACAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCT-TCGCA
107054135 ATATGAGTTGATT
129 ATATGAGTTGATT
** *
107054148 TTGAAAACAGAAATTGAAATTACCTCAGC-GTGTCCTGAGGCTCAACTCACCTCT-GCAATATGA
1 TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGACC-GAGGCTCAACTCACCTCTCGCAATATGA
** *
107054211 GTTGATTTTGA-AAACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCATCTTCGCA
65 GTT-ATTTTGACAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCTTCGCA
107054275 ATATGAGTTGATT
129 ATATGAGTTGATT
107054288 TT
1 TT
107054290 CCTTGAAAAG
Statistics
Matches: 129, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
140 20 0.16
141 57 0.44
142 25 0.19
143 27 0.21
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (141 bp):
TTGAAAACAGAAATTGAAAAGACCTCAGCAGTGACCGAGGCTCAACTCACCTCTCGCAATATGAG
TTATTTTGACAAACAAAAATTAAAAGTACCTCAACGTGTCCCGAGGCTCAACTCACCTTCGCAAT
ATGAGTTGATT
Found at i:107064221 original size:16 final size:15
Alignment explanation
Indices: 107064200--107064247 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
107064190 GATGTGAATA
107064200 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
107064216 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
107064231 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
107064247 A
1 A
107064248 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:107064223 original size:24 final size:24
Alignment explanation
Indices: 107064196--107064251 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
107064186 TAATGATGTG
*
107064196 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
107064220 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
107064244 AATAATAA
1 AATAATAA
107064252 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:107064230 original size:8 final size:8
Alignment explanation
Indices: 107064196--107064247 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
107064186 TAATGATGTG
*
107064196 AATAATAA
1 AATATTAA
107064204 AATATATAA
1 AATAT-TAA
107064213 AATA-TAA
1 AATATTAA
107064220 AATATTAA
1 AATATTAA
*
107064228 AATATCAA
1 AATATTAA
*
107064236 AATATTAG
1 AATATTAA
107064244 AATA
1 AATA
107064248 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:107064493 original size:29 final size:29
Alignment explanation
Indices: 107064453--107064519 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
107064443 TATAGTTAAG
*
107064453 ATATATACATAAGATAACATGTAAA-ATAT
1 ATATATAAATAAGATAACAT-TAAAGATAT
* *
107064482 ATATATAAATAATATAATATTAAAGATAT
1 ATATATAAATAAGATAACATTAAAGATAT
*
107064511 ATACATAAA
1 ATATATAAA
107064520 ATAGTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (29 bp):
ATATATAAATAAGATAACATTAAAGATAT
Found at i:107064510 original size:25 final size:25
Alignment explanation
Indices: 107064394--107064609 Score: 119
Period size: 25 Copynumber: 8.8 Consensus size: 25
107064384 TAAATATGTG
* *
107064394 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
107064419 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
107064444 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * *
107064466 ATAACATGTAAAATATATATATAAATAAT
1 ATAATAT-T--AA-AGATATATACATAAT
*
107064495 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * *
107064520 ATAGTATAAAATATATATATACATAAT
1 ATAATAT-TAA-AGATATATACATAAT
* *
107064547 ATAGA-ATTTAA-A-ATATACCTAAT
1 ATA-ATATTAAAGATATATACATAAT
* *
107064570 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
*
107064592 ATAATATT-AAGAAATATA
1 ATAATATTAAAGATATATA
107064610 ATAGTAACAA
Statistics
Matches: 147, Mismatches: 29, Indels: 31
0.71 0.14 0.15
Matches are distributed among these distances:
21 4 0.03
22 27 0.18
23 22 0.15
24 8 0.05
25 43 0.29
26 5 0.03
27 18 0.12
28 2 0.01
29 18 0.12
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:107064562 original size:27 final size:27
Alignment explanation
Indices: 107064400--107064563 Score: 93
Period size: 27 Copynumber: 6.4 Consensus size: 27
107064390 TGTGATAATA
*
107064400 TTAAAA-ATATGTACATAATATAG--T
1 TTAAAATATATATACATAATATAGAAT
*
107064424 GTTAAAA-ATACATACATAATATAG---
1 -TTAAAATATATATACATAATATAGAAT
* *
107064448 TT--AAGATATATACATAAGATA-ACAT
1 TTAAAATATATATACATAATATAGA-AT
* * *
107064473 GTAAAATATATATATA-AATAATATAAT
1 TTAAAATATATATACATAAT-ATAGAAT
* * *
107064500 ATT-AAAGATATATACATAAAATAGTA-
1 -TTAAAATATATATACATAATATAGAAT
*
107064526 TAAAATATATATATACATAATATAGAAT
1 TTAAA-ATATATATACATAATATAGAAT
107064554 TTAAAATATA
1 TTAAAATATA
107064564 CCTAATATAT
Statistics
Matches: 106, Mismatches: 19, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
21 2 0.02
22 14 0.13
23 2 0.02
25 23 0.22
26 4 0.04
27 53 0.50
28 8 0.08
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (27 bp):
TTAAAATATATATACATAATATAGAAT
Found at i:107065247 original size:30 final size:30
Alignment explanation
Indices: 107065097--107065271 Score: 228
Period size: 30 Copynumber: 5.8 Consensus size: 30
107065087 TAGGTACAAG
* *
107065097 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
107065127 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
107065157 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
**
107065187 TGGTGGTGGAAAAGGAATGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
107065217 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
107065247 TGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
107065272 TGAGAAAAGT
Statistics
Matches: 129, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
29 2 0.02
30 127 0.98
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:107065444 original size:41 final size:41
Alignment explanation
Indices: 107065399--107065481 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
107065389 TTAATTTTGG
* *
107065399 TGAGTTAGGTAAGGCTAAATTGGGTTTTGATTTAAATGGGC
1 TGAGTTAGGTAAGGCTAAATTGGATTTTGATGTAAATGGGC
*
107065440 TGAGTTAGGTAAGGTTAAATTGGATTTTGATGTAAATGGGC
1 TGAGTTAGGTAAGGCTAAATTGGATTTTGATGTAAATGGGC
107065481 T
1 T
107065482 AAAATTGGCC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.28, C:0.04, G:0.31, T:0.37
Consensus pattern (41 bp):
TGAGTTAGGTAAGGCTAAATTGGATTTTGATGTAAATGGGC
Found at i:107065940 original size:23 final size:23
Alignment explanation
Indices: 107065910--107065956 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
107065900 TTGCTATCTT
107065910 TGATTACCTTATTCTTTTCAAGA
1 TGATTACCTTATTCTTTTCAAGA
107065933 TGATTACCTTATTCTTTTCAAGA
1 TGATTACCTTATTCTTTTCAAGA
107065956 T
1 T
107065957 ATGTCCCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.09, T:0.49
Consensus pattern (23 bp):
TGATTACCTTATTCTTTTCAAGA
Found at i:107067034 original size:89 final size:89
Alignment explanation
Indices: 107066915--107067221 Score: 254
Period size: 89 Copynumber: 3.5 Consensus size: 89
107066905 GGTAGCAAGA
* * *
107066915 GAGCAGGTTGAAGATTGT-AATCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAGGATTAAAG
1 GAGCAGATCGAAGATGGTGAATCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAGGATTAAAG
*
107066979 ATCTAATCTCCCTAAGCAATAGTG
66 ATCTTATCTCCCTAAGCAATAGTG
* * * * * * * * **
107067003 GAGCAGATCGAAGATGGTGAATCTCATCTTCCTGAGGTAGGAGGGGAGAAGATTTTAGCCA--CC
1 GAGCAGATCGAAGATGGTGAATCTTATCTTCCTGAGGTAGCAAGGAAGCAGA-CTAAG-GATTAA
* *
107067066 A-ACCTTATCTCTCTTAGGTAGC-A-AGT-
64 AGATCTTATCTC-CCTA---AGCAATAGTG
* * * * * * *
107067092 GAGTAGGTTGAAGAT--TGAAATCTTATCTTTCTGAGGTAGCAAGGAAGCAAACTGAGGATTGAA
1 GAGCAGATCGAAGATGGTG-AATCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAGGATTAAA
*
107067155 GATCTTATCTCCCTAAGCAGTAGTG
65 GATCTTATCTCCCTAAGCAATAGTG
* *
107067180 GAGCAGATCGAAGATGGCGAATCTTATCTTCCCGAGGTAGCA
1 GAGCAGATCGAAGATGGTGAATCTTATCTTCCTGAGGTAGCA
107067222 GGGGAGTAGA
Statistics
Matches: 163, Mismatches: 40, Indels: 31
0.70 0.17 0.13
Matches are distributed among these distances:
85 3 0.02
86 1 0.01
87 8 0.05
88 65 0.40
89 74 0.45
90 7 0.04
91 2 0.01
92 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (89 bp):
GAGCAGATCGAAGATGGTGAATCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAGGATTAAAG
ATCTTATCTCCCTAAGCAATAGTG
Found at i:107067187 original size:177 final size:176
Alignment explanation
Indices: 107066891--107067377 Score: 726
Period size: 177 Copynumber: 2.8 Consensus size: 176
107066881 GAATTCATAG
* *
107066891 CCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAATCTTATCTTCCTGAGGTAGCA
1 CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAATCTTATCTTCCTGAGGTAGCA
* * * *
107066956 AGGAAGCAGACTAAGGATTAAAGATCTAATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGT
66 AGGAAGCAGACTGAGGATT-AAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGC
* *
107067021 GAATCTCATCTTCCTGAGGTAGGAGGGGAGAAGATTTTAGCCACCAA
130 GAATCTCATCTTCCCGAGGTAGCAGGGGAGAAGATTTTAGCCACCAA
* * * *
107067068 CCTTATCTCTCTTAGGTAGCAAGTGAGTAGGTTGAAGATTGAAATCTTATCTTTCTGAGGTAGCA
1 CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAATCTTATCTTCCTGAGGTAGCA
*
107067133 AGGAAGCAAACTGAGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGC
66 AGGAAGCAGACTGAGGATT-AAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGC
* * *
107067198 GAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGATTTTAGCCACCAG
130 GAATCTCATCTTCCCGAGGTAGCAGGGGAGAAGATTTTAGCCACCAA
* * * *
107067245 CCTTATCTCTCTGAGGTAGAAAGAGAGCAGGTTAAATATTGAAGTCTTATCTTCCTGAGGTAGCA
1 CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAATCTTATCTTCCTGAGGTAGCA
* * * *
107067310 AGGAAGCAGATTGAAGA-T-AGATCTTGTCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCG
66 AGGAAGCAGACTGAGGATTAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCG
107067373 AATCT
131 AATCT
107067378 TGTCTCCCTA
Statistics
Matches: 280, Mismatches: 30, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
174 48 0.17
176 1 0.00
177 231 0.82
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (176 bp):
CCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAATCTTATCTTCCTGAGGTAGCA
AGGAAGCAGACTGAGGATTAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCG
AATCTCATCTTCCCGAGGTAGCAGGGGAGAAGATTTTAGCCACCAA
Found at i:107067367 original size:41 final size:43
Alignment explanation
Indices: 107067314--107067499 Score: 137
Period size: 44 Copynumber: 4.3 Consensus size: 43
107067304 GTAGCAAGGA
* *
107067314 AGCAGATTGAAGAT-AG-ATCTTGTCTCCCTAAGTAGTAGTGG
1 AGCAGATCGAAGATGAGAATCTTGTCTCCCTAAGCAGTAGTGG
*
107067355 AGCAGATCGAAGATGGCGAATCTTGTCTCCCTAAGCAGTAGTGG
1 AGCAGATCGAAGAT-GAGAATCTTGTCTCCCTAAGCAGTAGTGG
** ** ** * * * *
107067399 AGCAGATTTAAG-CCACCATCCTATCTCCCTAAGAAATAGTGG
1 AGCAGATCGAAGATGAGAATCTTGTCTCCCTAAGCAGTAGTGG
* * * * * *
107067441 AGTAG-GCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGA
1 AGCAGATC-GAAGATGAGA-ATCTTGTCTCCCTAAGCAGTAGTGG
*
107067485 AGCAGATCAAAGATG
1 AGCAGATCGAAGATG
107067500 GCAAATCTTA
Statistics
Matches: 109, Mismatches: 29, Indels: 11
0.73 0.19 0.07
Matches are distributed among these distances:
41 13 0.12
42 28 0.26
43 3 0.03
44 64 0.59
45 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (43 bp):
AGCAGATCGAAGATGAGAATCTTGTCTCCCTAAGCAGTAGTGG
Found at i:107067738 original size:44 final size:43
Alignment explanation
Indices: 107067690--107068046 Score: 140
Period size: 44 Copynumber: 8.1 Consensus size: 43
107067680 AGCCTTAACC
107067690 CCCTAAGCAGTAGGGTAACAGGCTAAAAATTATAGATCTTATCT
1 CCCTAAGCAGTAGGG-AACAGGCTAAAAATTATAGATCTTATCT
* * * *** * * *
107067734 CCCTAAGTAGTAGCG--CA-GCAAATCGAAGACGGT-GAGCCTTAACCC
1 CCCTAAGCAGTAGGGAACAGGCTAA---AA-ATTATAGA-TCTT-ATCT
* ** *
107067779 CCCTAAGTAGTAGGGTAACAGGCTGGAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGG-AACAGGCTAAAAATTATAGATCTTATCT
* * * * * *** * *
107067823 CCCTAAGCAGTAGCAGAGCA-GATCGAAGACGGT-GAGCCTTAACT
1 CCCTAAGCAGTAG-GGAACAGGCT-AAAAATTATAGA-TCTTATCT
*
107067867 CCCTAAGCAGTAGGGTAACAGGCTAAAAATTATAGATCTTGTCT
1 CCCTAAGCAGTAGGG-AACAGGCTAAAAATTATAGATCTTATCT
* * * * *
107067911 CCCTAAGCAGTAGTGGAGCA-GATCAAAGATGGTA-AG-TCTTAACC
1 CCCTAAGCAGTAG-GGAACAGGCT-AAAAAT--TATAGATCTTATCT
* * * * *
107067955 CCCTAAGTAGTAGGGAAACATGCTAGAAATTACAGACCTTATCT
1 CCCTAAGCAGTAGGG-AACAGGCTAAAAATTATAGATCTTATCT
* * *
107067999 CCCTAAGCAGTACTGGAGCAGGCTAAAAATTA-CGAGTCTTATCT
1 CCCTAAGCAGTA-GGGAACAGGCTAAAAATTATAGA-TCTTATCT
107068043 CCCT
1 CCCT
107068047 GAAGTTGCAG
Statistics
Matches: 222, Mismatches: 64, Indels: 54
0.65 0.19 0.16
Matches are distributed among these distances:
40 4 0.02
41 2 0.01
42 2 0.01
43 17 0.08
44 154 0.69
45 33 0.15
46 6 0.03
48 2 0.01
49 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGAACAGGCTAAAAATTATAGATCTTATCT
Found at i:107067738 original size:88 final size:88
Alignment explanation
Indices: 107067627--107068019 Score: 561
Period size: 88 Copynumber: 4.5 Consensus size: 88
107067617 AAGCAGACTG
*
107067627 AAAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCC
1 AAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCC
107067692 CTAAGCAGTAGGGTAACAGGCTA
66 CTAAGCAGTAGGGTAACAGGCTA
* * * * *
107067715 AAAATTATAGATCTTATCTCCCTAAGTAGTAGCGCAGCAAATCGAAGACGGTGAGCCTTAACCCC
1 AAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAA-CCC
* *
107067780 CCTAAGTAGTAGGGTAACAGGCTG
65 CCTAAGCAGTAGGGTAACAGGCTA
* ** *
107067804 GAAATTACAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAGACGGTGAGCCTTAACTCC
1 AAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCC
107067869 CTAAGCAGTAGGGTAACAGGCTA
66 CTAAGCAGTAGGGTAACAGGCTA
* * * * * *
107067892 AAAATTATAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTAAGTCTTAACCCC
1 AAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCC
* * *
107067957 CTAAGTAGTAGGGAAACATGCTA
66 CTAAGCAGTAGGGTAACAGGCTA
* * *
107067980 GAAATTACAGACCTTATCTCCCTAAGCAGTACTGGAGCAG
1 AAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
107068020 GCTAAAAATT
Statistics
Matches: 269, Mismatches: 35, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
88 189 0.70
89 80 0.30
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (88 bp):
AAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCC
CTAAGCAGTAGGGTAACAGGCTA
Found at i:107067811 original size:177 final size:176
Alignment explanation
Indices: 107067628--107068019 Score: 613
Period size: 177 Copynumber: 2.2 Consensus size: 176
107067618 AGCAGACTGA
*
107067628 AAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCC
1 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCC
*
107067693 TAAGCAGTAGGGTAACAGGCTAAAAATTATAGATCTTATCTCCCTAAGTAGTAGCGCAGCAAATC
66 TAAGCAGTAGGGTAACAGGCTAAAAATTATAGATCTTATCTCCCTAAGCAGTAGCGCAGCAAATC
* * * *
107067758 GAAGACGGTGAGCCTTAACCCCCCTAAGTAGTAGGGTAACAGGCTGG
131 AAAGACGGTAAGCCTTAA-CCCCCTAAGTAGTAGGGAAACAGGCTAG
** *
107067805 AAATTACAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAGACGGTGAGCCTTAACTCCC
1 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCC
* * * *
107067870 TAAGCAGTAGGGTAACAGGCTAAAAATTATAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATC
66 TAAGCAGTAGGGTAACAGGCTAAAAATTATAGATCTTATCTCCCTAAGCAGTAGCGCAGCAAATC
* * *
107067935 AAAGATGGTAAGTCTTAACCCCCTAAGTAGTAGGGAAACATGCTAG
131 AAAGACGGTAAGCCTTAACCCCCTAAGTAGTAGGGAAACAGGCTAG
* *
107067981 AAATTACAGACCTTATCTCCCTAAGCAGTACTGGAGCAG
1 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
107068020 GCTAAAAATT
Statistics
Matches: 195, Mismatches: 20, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
176 60 0.31
177 135 0.69
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (176 bp):
AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCC
TAAGCAGTAGGGTAACAGGCTAAAAATTATAGATCTTATCTCCCTAAGCAGTAGCGCAGCAAATC
AAAGACGGTAAGCCTTAACCCCCTAAGTAGTAGGGAAACAGGCTAG
Found at i:107068236 original size:44 final size:44
Alignment explanation
Indices: 107068173--107068421 Score: 200
Period size: 44 Copynumber: 5.7 Consensus size: 44
107068163 ACCAACAGTG
* * *
107068173 AATCTTATCTCCCTAAAGTTGTAGTGGAGTAGATTGAAGCCACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * *
107068217 AATCTTATCCCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACC
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * * * *
107068261 AGTCTTATCTCCCTGAAGTTGTAGCGGAGCAGACTGAAGATAGCA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTA-CA
* ** * ** * * *
107068306 AATCTCATAC-CTTTAAAATTGCAAAGGAACGGATT--A-CCACA
1 AATCTTAT-CTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * *
107068347 AATCTTATCTCCCTGAAGATGCAGTGGAGTAGATTGAAGTTACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACA
* *
107068391 AACCTTATCTCCCTGAAGTTGCAGTGGAGCA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCA
107068422 ATGGATCGGA
Statistics
Matches: 153, Mismatches: 46, Indels: 12
0.73 0.22 0.06
Matches are distributed among these distances:
40 1 0.01
41 24 0.16
42 1 0.01
43 2 0.01
44 102 0.67
45 22 0.14
46 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACA
Found at i:107069707 original size:3 final size:3
Alignment explanation
Indices: 107069699--107069887 Score: 90
Period size: 3 Copynumber: 62.3 Consensus size: 3
107069689 TTTGGCTACT
*
107069699 TTA TTA TTA -AA TTAA TTA TTA TTA -TA TTA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* **
107069742 TCCTA TT- TT- TTA -TA TTA TTA TTA TTG TTA TTA ACA TGTA TTA TTA
1 T--TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * * ** *
107069787 TTAA TGTA TTG TTG TTC TCTA TTA TTA TTA TTG TTA CCA -TA TAA TTA
1 TT-A T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
107069834 TTA TTAA GGTA TTA TT- TTCA TTA TTT TCTA TT- TTA TTA TTA TTA TTC
1 TTA TT-A -TTA TTA TTA TT-A TTA TTA T-TA TTA TTA TTA TTA TTA TTA
107069881 TTA TTA T
1 TTA TTA T
107069888 CATTTTTTAT
Statistics
Matches: 143, Mismatches: 24, Indels: 38
0.70 0.12 0.19
Matches are distributed among these distances:
2 15 0.10
3 107 0.75
4 18 0.13
5 3 0.02
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:107069727 original size:23 final size:20
Alignment explanation
Indices: 107069713--107069887 Score: 65
Period size: 20 Copynumber: 8.6 Consensus size: 20
107069703 TATTAAATTA
107069713 ATTATTATTATATTATTATT
1 ATTATTATTATATTATTATT
*
107069733 ATTATTATTTCCTATT-TT-TT
1 ATTATTA-TT-ATATTATTATT
*
107069753 A-TATTATTATTATTGTTATT
1 ATTATTATTA-TATTATTATT
**
107069773 AACATGTATTATTATTAATGTATT
1 ATTAT-TATTA-TATT-AT-TATT
* * * *
107069797 GTTGTT-CTCTATTATTATT
1 ATTATTATTATATTATTATT
* ** *
107069816 ATTGTTACCATATAATTATT
1 ATTATTATTATATTATTATT
* *
107069836 ATTAAGGTATTATTTTCATTATT
1 ATT-A-TTATTATATT-ATTATT
* *
107069859 -TT-CTATTTTATTATTATT
1 ATTATTATTATATTATTATT
*
107069877 ATTCTTATTAT
1 ATTATTATTAT
107069888 CATTTTTTAT
Statistics
Matches: 115, Mismatches: 25, Indels: 30
0.68 0.15 0.18
Matches are distributed among these distances:
18 12 0.10
19 25 0.22
20 33 0.29
21 10 0.09
22 22 0.19
23 8 0.07
24 5 0.04
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.61
Consensus pattern (20 bp):
ATTATTATTATATTATTATT
Found at i:107069789 original size:31 final size:31
Alignment explanation
Indices: 107069699--107069789 Score: 89
Period size: 31 Copynumber: 3.0 Consensus size: 31
107069689 TTTGGCTACT
* *
107069699 TTATTATTA-AATTAATTAT-TATTATATTA
1 TTATTATTATTATTAACTATGTATTATATTA
** * *
107069728 TTATTATTATTATTTCCTATTTTTTATATTA
1 TTATTATTATTATTAACTATGTATTATATTA
*
107069759 TTATTATTGTTATTAAC-ATGTATTATTATTA
1 TTATTATTATTATTAACTATGTATTA-TATTA
107069790 ATGTATTGTT
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
29 9 0.18
30 12 0.24
31 28 0.57
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (31 bp):
TTATTATTATTATTAACTATGTATTATATTA
Found at i:107069873 original size:27 final size:25
Alignment explanation
Indices: 107069843--107069898 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 25
107069833 ATTATTAAGG
*
107069843 TATTATT-TTCATTATTTTCTATTTTAT
1 TATTATTATTC-TTATTATC-ATTTT-T
107069870 TATTATTATTCTTATTATCATTTTT
1 TATTATTATTCTTATTATCATTTTT
107069895 TATT
1 TATT
107069899 TGTTTGTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 5 0.19
26 5 0.19
27 14 0.52
28 3 0.11
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (25 bp):
TATTATTATTCTTATTATCATTTTT
Found at i:107073317 original size:68 final size:67
Alignment explanation
Indices: 107073209--107073335 Score: 220
Period size: 68 Copynumber: 1.9 Consensus size: 67
107073199 AGTATAACCA
*
107073209 TTTAAGAATAAATATCTAAGTTGTTTTCACCTATGAATA-TTCCTAACCTTTCCATGTCATGAAA
1 TTTAAGAATAAATATCTAAGTTGTTTTCACCTATGAATATTTCC-AAACTTTCCATGTCATGAAA
107073273 TAT
65 TAT
107073276 TTTAAGAAATAAATATCTAAGTTGTTTTCACCTATGAATATTTCCAAACTTTCCATGTCA
1 TTTAAG-AATAAATATCTAAGTTGTTTTCACCTATGAATATTTCCAAACTTTCCATGTCA
107073336 AAGATAAATT
Statistics
Matches: 57, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
67 6 0.11
68 47 0.82
69 4 0.07
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.40
Consensus pattern (67 bp):
TTTAAGAATAAATATCTAAGTTGTTTTCACCTATGAATATTTCCAAACTTTCCATGTCATGAAAT
AT
Found at i:107075343 original size:174 final size:175
Alignment explanation
Indices: 107075036--107075389 Score: 494
Period size: 174 Copynumber: 2.0 Consensus size: 175
107075026 ATAGTCACTC
* * * * *
107075036 AACTTTGCCTAGTCTAACGTGGCAAGTTAATTAACCACATTAGCTAATTATTACTTACCACGTCA
1 AACTTTACCTAGTCCAACGTGGCAAGTTAACTAACCACATCAGCTAATTA-TACTGACCACGTCA
* * * * * *
107075101 CCTGTCTCGTTAGGCTTGTAACAAAAAATGTTAATGGGTGACTTATTTGTCACTTTTTGATAACG
65 CCTATCTCGTTAGGCCTATAACAAAAAATGTGAATAGGTGACTGATTTGTCACTTTTTGATAACG
** *
107075166 TTAGTGACTGATTTATTATTTTTTTAAAGTTGAGTGATTGAATTGA
130 TTAGTGACTGATTTATTATTTTTCAAAAGTTGAGTGACTGAATTGA
* ** * *
107075212 AACTTTACCTCGTCCAACGTGGCAAGTTAACTGGCCACGTCAGCTAATTA-ACTGGCCACGTCAC
1 AACTTTACCTAGTCCAACGTGGCAAGTTAACTAACCACATCAGCTAATTATACTGACCACGTCAC
* *
107075276 CTATCTCGTTAGGCCTATAACAGAAAATGTGAATAGGTGACTGATTTGTCGCTTTTTGATAACGT
66 CTATCTCGTTAGGCCTATAACAAAAAATGTGAATAGGTGACTGATTTGTCACTTTTTGATAACGT
*
107075341 TAGTGACTGTTTTATTATTTTTCAAAAGTTGAGTGACTGAATTGA
131 TAGTGACTGATTTATTATTTTTCAAAAGTTGAGTGACTGAATTGA
107075386 AACT
1 AACT
107075390 AGAGTGACTA
Statistics
Matches: 156, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
174 114 0.73
176 42 0.27
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (175 bp):
AACTTTACCTAGTCCAACGTGGCAAGTTAACTAACCACATCAGCTAATTATACTGACCACGTCAC
CTATCTCGTTAGGCCTATAACAAAAAATGTGAATAGGTGACTGATTTGTCACTTTTTGATAACGT
TAGTGACTGATTTATTATTTTTCAAAAGTTGAGTGACTGAATTGA
Found at i:107076726 original size:17 final size:17
Alignment explanation
Indices: 107076706--107076838 Score: 158
Period size: 17 Copynumber: 7.5 Consensus size: 17
107076696 AATGATATGT
107076706 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
* *
107076723 AATCTTAAATATGATTGC
1 AATCTTAGATATGA-TAC
107076741 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
107076758 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
*
107076776 AATCTTAAATATGATAC
1 AATCTTAGATATGATAC
* *
107076793 AATCATAGATATGATTGC
1 AATCTTAGATATGA-TAC
*
107076811 AATCTTGGATATGATATAC
1 AATCTTAGATATG--ATAC
107076830 AATCTTAGA
1 AATCTTAGA
107076839 AGATATGATT
Statistics
Matches: 97, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
17 43 0.44
18 43 0.44
19 10 0.10
20 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (17 bp):
AATCTTAGATATGATAC
Found at i:107076746 original size:35 final size:35
Alignment explanation
Indices: 107076697--107076838 Score: 212
Period size: 35 Copynumber: 4.0 Consensus size: 35
107076687 ATAATCTTCA
* *
107076697 ATGATATGTAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
107076733 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
* *
107076768 ATGATTGCAATCTTAAATATGATACAATCATAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
107076803 ATGATTGCAATCTTGGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
107076839 AGATATGATT
Statistics
Matches: 97, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
35 80 0.82
36 5 0.05
37 12 0.12
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:107077381 original size:17 final size:17
Alignment explanation
Indices: 107077316--107077381 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
107077306 TCTAAACCAA
*
107077316 TATATTTTATATTTT-T
1 TATATATTATATTTTAT
107077332 TATATAATTATTATTCTTA-
1 TATAT-ATTA-TATT-TTAT
*
107077351 TAAATA-TAT-TTTTAT
1 TATATATTATATTTTAT
107077366 TATATATTATATTTTA
1 TATATATTATATTTTA
107077382 AATTTATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
14 3 0.08
15 7 0.17
16 9 0.22
17 10 0.25
18 5 0.12
19 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATATTATATTTTAT
Found at i:107080861 original size:22 final size:22
Alignment explanation
Indices: 107080836--107080891 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
107080826 GCATGAATAC
* * *
107080836 ATATATTACAAATACATAAAAA
1 ATATAATACAAAAAAATAAAAA
107080858 ATATAATACAAAAAAAT-AAAA
1 ATATAATACAAAAAAATAAAAA
*
107080879 ATA-AAAACAAAAA
1 ATATAATACAAAAA
107080892 CGTACCTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 7 0.23
22 14 0.47
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (22 bp):
ATATAATACAAAAAAATAAAAA
Found at i:107080871 original size:15 final size:16
Alignment explanation
Indices: 107080846--107080875 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
107080836 ATATATTACA
107080846 AATACATAAAAAATAT
1 AATACATAAAAAATAT
107080862 AATACA-AAAAAATA
1 AATACATAAAAAATA
107080876 AAAATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (16 bp):
AATACATAAAAAATAT
Found at i:107080885 original size:15 final size:15
Alignment explanation
Indices: 107080845--107080878 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
107080835 CATATATTAC
107080845 AAATACATAAAAAATA
1 AAATACA-AAAAAATA
*
107080861 TAATACAAAAAAATA
1 AAATACAAAAAAATA
107080876 AAA
1 AAA
107080879 ATAAAAACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (15 bp):
AAATACAAAAAAATA
Found at i:107081597 original size:22 final size:19
Alignment explanation
Indices: 107081558--107081610 Score: 54
Period size: 22 Copynumber: 2.6 Consensus size: 19
107081548 TTCCTTTTAT
*
107081558 TATTATTATTTTATTAATATA
1 TATTATTATTTT-GTAAT-TA
107081579 GTATTATTATTATTGTAATTA
1 -TATTATTATT-TTGTAATTA
107081600 TATT-TTATTTT
1 TATTATTATTTT
107081611 TGTTTATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 2 0.07
19 5 0.17
20 4 0.14
21 2 0.07
22 14 0.48
23 2 0.07
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (19 bp):
TATTATTATTTTGTAATTA
Found at i:107081608 original size:25 final size:25
Alignment explanation
Indices: 107081552--107081608 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
107081542 TTTTTATTCC
*
107081552 TTTTATTATTATTATTTTATTAATA
1 TTTTATTATTATTATTTAATTAATA
**
107081577 TAGTATTATTATTATTGTAATT-ATA
1 TTTTATTATTATTATT-TAATTAATA
107081602 TTTTATT
1 TTTTATT
107081609 TTTGTTTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.65
Consensus pattern (25 bp):
TTTTATTATTATTATTTAATTAATA
Found at i:107081673 original size:17 final size:17
Alignment explanation
Indices: 107081651--107081691 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
107081641 TCATTAATTC
107081651 ATTATTATTAACATATT
1 ATTATTATTAACATATT
* **
107081668 ATTATTCTTAATGTATT
1 ATTATTATTAACATATT
107081685 ATTATTA
1 ATTATTA
107081692 CTAGTTATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (17 bp):
ATTATTATTAACATATT
Found at i:107081686 original size:31 final size:30
Alignment explanation
Indices: 107081632--107081721 Score: 85
Period size: 31 Copynumber: 2.9 Consensus size: 30
107081622 TTACTGTTTT
107081632 GTTATTAATTCATTAAT-TCATTATTATTAACATA
1 GTTATT-ATTC-TTAATGT-ATTATTATT-AC-TA
107081666 -TTATTATTCTTAATGTATTATTATTACTA
1 GTTATTATTCTTAATGTATTATTATTACTA
* **
107081695 GTTATTATTATTTCTAGTATTATTATT
1 GTTATTATTCTTAAT-GTATTATTATT
107081722 GTGTATGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
29 2 0.04
30 13 0.26
31 25 0.50
32 5 0.10
33 5 0.10
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (30 bp):
GTTATTATTCTTAATGTATTATTATTACTA
Found at i:107081737 original size:3 final size:3
Alignment explanation
Indices: 107081455--107081721 Score: 81
Period size: 3 Copynumber: 88.3 Consensus size: 3
107081445 TTTTATTAAA
* * *
107081455 TAT TAT TAT TAT CAT T-T CTAA TAT TAT TAA TAT TAT TAT T-T ATAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * * * * * * *
107081500 T-T T-T TAT TGT TAC TAT TAT TAA TAT TCT TGT TAT TAA CAT TGT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
107081546 TAT TCCT T-T TAT TAT TAT TAT T-T TAT TAA TA- TAG TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
107081589 TAT TGT AAT TA- TAT T-T TAT TTT TGTT TATT TACT TAC TGT T-T TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TA-T TA-T TAT TAT TAT TAT
* * *
107081634 TAT TAAT TCAT TAAT TCAT TAT TAT TAA CA- TAT TAT TAT TCT TAAT
1 TAT T-AT T-AT T-AT T-AT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* *
107081680 GTAT TAT TAT TAC TAGT TAT TAT TAT T-T CTAG TAT TAT TAT T
1 -TAT TAT TAT TAT TA-T TAT TAT TAT TAT -TAT TAT TAT TAT T
107081722 GTGTATGTTT
Statistics
Matches: 195, Mismatches: 48, Indels: 42
0.68 0.17 0.15
Matches are distributed among these distances:
2 20 0.10
3 145 0.74
4 29 0.15
5 1 0.01
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:107081923 original size:150 final size:136
Alignment explanation
Indices: 107081712--107082369 Score: 537
Period size: 144 Copynumber: 4.7 Consensus size: 136
107081702 TTATTTCTAG
* * *
107081712 TATTATTATTGTGTATGTTTTATTATATATGTATATATATATTTATATATAGTATTATTTTTACT
1 TATTAATATTGTGAATGTTTTATCATATATGTATATATATATTTATATATAGTATTATTTTTA-T
*
107081777 TACTTTATTTTAATATTATGGTTATGTTATATTTACTTTTTTTTGCATTTTAATATTATTACTAT
65 TACTTTATTTTAATATT-T--TTA--TTATATTTACTTTTTTTTGCATTTCAATATTATTACTAT
107081842 TATTGCTATCAT
125 TATTGCTATCAT
107081854 TATTAATATTAGTGAATGTTTTTATCATATATGTATATATATATTTATATTTATATAGTATTATT
1 TATTAATATT-GTGAATG-TTTTATCATATATGTATATATATA-TT-TA--TATATAGTATTA--
* * * *
107081919 TTTTTATTACTTTATTTTAATATTTTTATTGTATTTGCTTTTTTTTGTATTTCAATATTATTATT
58 TTTTTATTACTTTATTTTAATATTTTTATTATATTTACTTTTTTTTGCATTTCAATATTATTACT
*
107081984 ATTA-T--TATTAT
123 ATTATTGCTATCAT
** * *
107081995 TA-T-ATATT-TTTAT-TATATAT-GTATATG--TATATATATTTATATATAGTATTATTTTTTT
1 TATTAATATTGTGAATGT-TTTATCATATATGTATATATATATTTATATATAGTATTA--TTTTT
* *
107082053 ATTACTTTATTTTAATACTTTTATTATATTATA-TTTGCTTTTTGTATTTCAATATTA-T--TAT
63 ATTACTTTATTTTAATATTTTTATTATATT-TACTTT--TTTTTGCATTTCAATATTATTACTAT
* *
107082114 CA-T-C-ATTAT
125 TATTGCTATCAT
*
107082123 TATTAATATTAGTGTATAT-TTTTATTATATATGTATGTATATGTATATATATTTATATATAGTA
1 TATTAATATT-GTG-A-ATGTTTTA-T-CATA--TATG--TA--TATATATATTTATATATAGTA
* *
107082187 TTATTTTTAATTACTTTATTTTAATATTATTATATTATATTTAC--TTTTTTGTATTTCATTATT
55 TTATTTTT-ATTACTTTATTTTAATATT-TT-TATTATATTTACTTTTTTTTGCATTTCAATATT
** * **
107082250 ATTGTTAATATTATTATCAT
117 ATTACTATTATTGCTATCAT
* * *
107082270 TATTAATATTAGTGTATGTTTTTATTATATGTGTATATATATATATCTTTATATATAGTATTATT
1 TATTAATATT-GTGAATG-TTTTATCATATATG--TATATATATA--TTTATATATAGTATTATT
107082335 TTTAATTACTTTATTTTAATATTATTATATTATAT
60 TTT-ATTACTTTATTTTAATATT-TT-TATTATAT
107082370 GTCTTCCTTT
Statistics
Matches: 443, Mismatches: 29, Indels: 87
0.79 0.05 0.16
Matches are distributed among these distances:
128 12 0.03
129 51 0.12
130 7 0.02
131 21 0.05
132 3 0.01
133 11 0.02
134 4 0.01
135 7 0.02
136 6 0.01
137 3 0.01
138 4 0.01
139 5 0.01
140 1 0.00
141 33 0.07
142 15 0.03
143 86 0.19
144 90 0.20
145 18 0.04
146 6 0.01
147 23 0.05
148 13 0.03
149 18 0.04
150 6 0.01
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.60
Consensus pattern (136 bp):
TATTAATATTGTGAATGTTTTATCATATATGTATATATATATTTATATATAGTATTATTTTTATT
ACTTTATTTTAATATTTTTATTATATTTACTTTTTTTTGCATTTCAATATTATTACTATTATTGC
TATCAT
Found at i:107081980 original size:3 final size:3
Alignment explanation
Indices: 107081974--107082010 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
107081964 TGTATTTCAA
*
107081974 TAT TAT TAT TAT TAT TAT TAT TAT ATAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
107082011 ATATGTATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:107082015 original size:129 final size:128
Alignment explanation
Indices: 107081872--107082410 Score: 518
Period size: 143 Copynumber: 4.0 Consensus size: 128
107081862 TTAGTGAATG
* * *
107081872 TTTTTATCATATATGTATATATATATTTATATT-TATATAGTATTATTTTTTTATTACTTTATTT
1 TTTTTATTATATATGTATATATATATATATATTATATATAGTATTA-TTTTTAATTACTTTATTT
*
107081936 TAATATTTTTATTGTATTTGCTTTTTTTTGTATTTCAATATTATTATTATTATTATTATTATATA
65 TAATATTTTTATTATATTT-CTTTTTTTTGTATTTCAATATTATTATTATTATTATTATTATATA
* *
107082001 TTTTTATTATATATGTATATGTATATATAT-TTATATATAGTATTATTTTTTTATTACTTTATTT
1 TTTTTATTATATATGTATATATATATATATATTATATATAGTATTA-TTTTTAATTACTTTATTT
* *
107082065 TAATACTTTTATTATATTATATTTGCTTTTTGTATTTCAATATTATTATCATCATTATTATTAAT
65 TAATATTTTTATTATATT-TCTTT--TTTTTGTATTTCAATATTATTAT--T-ATTATTA-T--T
107082130 ATTAGTGTATA
121 ATTA---TATA
*
107082141 TTTTTATTATATATGTATGTATATGTATATATATTTATATATAGTATTATTTTTAATTACTTTAT
1 TTTTTATTATATATGTA--TATATATATATATA-TTATATATAGTATTATTTTTAATTACTTTAT
* *
107082206 TTTAATATTATTATATTATATTTAC--TTTTTTGTATTTCATTATTATTGTTAATATTATTATCA
63 TTTAATATT-TT-TATTATATTT-CTTTTTTTTGTATTTCA--A-TA---TTATTATTATTATTA
107082269 TTATTAATATTA
119 TTATT-ATA-TA
* * *
107082281 GTGTATGTTTTTATTATATGTGTATATATATATATCTTTATATATAGTATTATTTTTAATTACTT
1 -T-T-T-TTATTA-TATATGTATATATATATATAT-ATTATATATAGTATTATTTTTAATTACTT
* * *
107082346 TATTTTAATATTATTATATTATATGTCTTCCTTTTTGTGTTT--AT-TTATTTATTATT-TTATT
60 TATTTTAATATT-TT-TATTATATTTCTT-TTTTTTGTATTTCAATATTA-TTATTATTATTATT
107082407 ATTA
121 ATTA
107082411 ACTAATTTAG
Statistics
Matches: 350, Mismatches: 22, Indels: 70
0.79 0.05 0.16
Matches are distributed among these distances:
128 2 0.01
129 77 0.22
130 1 0.00
131 23 0.07
133 1 0.00
134 7 0.02
135 2 0.01
136 10 0.03
137 12 0.03
139 2 0.01
140 24 0.07
141 19 0.05
142 14 0.04
143 92 0.26
144 31 0.09
145 27 0.08
147 6 0.02
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.62
Consensus pattern (128 bp):
TTTTTATTATATATGTATATATATATATATATTATATATAGTATTATTTTTAATTACTTTATTTT
AATATTTTTATTATATTTCTTTTTTTTGTATTTCAATATTATTATTATTATTATTATTATATA
Found at i:107082126 original size:143 final size:140
Alignment explanation
Indices: 107081972--107082369 Score: 541
Period size: 143 Copynumber: 2.8 Consensus size: 140
107081962 TTTGTATTTC
*
107081972 AATATTATTATTATTATTATTATTATATATTTTTATTATATATGTATATGTATATATATTTATAT
1 AATATTATTATTATTATTAATATTATATATTTTTATTATATATGTATATGTATATATATTTATAT
* *
107082037 ATAGTATTATTTTTTTATTACTTTATTTTAATACTTTTATTATATTATATTTGC-TTTTTGTATT
66 ATAGTATTA-TTTTTAATTACTTTATTTTAATA---TTATTATATTATATTTACTTTTTTGTATT
107082101 TCAATATTATT-AT
127 TCAATATTATTGAT
* * * * * *
107082114 CATCATTATTATTAATATTAGT-GTATATTTTTATTATATATGTATGTATATGTATATATATTTA
1 AAT-ATTATTATTATTATTAATATTATATATTT-TTAT-TATATATGTATATGTATATATATTTA
107082178 TATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATATTATATTTACTTTTTTGTATTT
63 TATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATATTATATTTACTTTTTTGTATTT
* *
107082243 CATTATTATTGTT
128 CAATATTATTGAT
* * * * *
107082256 AATATTATTATCATTATTAATATTAGTGTATGTTTTTATTATATGTGTATATATATATATCTTTA
1 AATATTATTATTATTATTAATATTA---TATATTTTTATTATATATGTATATGTATATATATTTA
107082321 TATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATATTATAT
63 TATATAGTATTATTTTTAATTACTTTATTTTAATATTATTATATTATAT
107082370 GTCTTCCTTT
Statistics
Matches: 227, Mismatches: 20, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
140 17 0.07
141 35 0.15
142 15 0.07
143 113 0.50
144 41 0.18
145 6 0.03
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (140 bp):
AATATTATTATTATTATTAATATTATATATTTTTATTATATATGTATATGTATATATATTTATAT
ATAGTATTATTTTTAATTACTTTATTTTAATATTATTATATTATATTTACTTTTTTGTATTTCAA
TATTATTGAT
Found at i:107082161 original size:23 final size:22
Alignment explanation
Indices: 107082122--107082164 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
107082112 ATCATCATTA
107082122 TTATTAATATTAGTGTATATTT
1 TTATTAATATTAGTGTATATTT
107082144 TTATTATATATGTA-TGTATAT
1 TTATTA-ATAT-TAGTGTATAT
107082165 GTATATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 11 0.58
24 2 0.11
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (22 bp):
TTATTAATATTAGTGTATATTT
Found at i:107082165 original size:10 final size:10
Alignment explanation
Indices: 107082148--107082187 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
107082138 ATATTTTTAT
107082148 TATATATGTA
1 TATATATGTA
*
107082158 TGTATATGTA
1 TATATATGTA
*
107082168 TATATATTTA
1 TATATATGTA
107082178 TATATA-GTA
1 TATATATGTA
107082187 T
1 T
107082188 TATTTTTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
9 3 0.12
10 23 0.88
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.53
Consensus pattern (10 bp):
TATATATGTA
Found at i:107082191 original size:16 final size:16
Alignment explanation
Indices: 107082137--107082192 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
107082127 AATATTAGTG
*
107082137 TATATTTTTAT-TATA
1 TATATATTTATATATA
* * *
107082152 TATGTATGTATATGTA
1 TATATATTTATATATA
107082168 TATATATTTATATATA
1 TATATATTTATATATA
107082184 GTAT-TATTT
1 -TATATATTT
107082193 TTAATTACTT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
15 8 0.25
16 21 0.66
17 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (16 bp):
TATATATTTATATATA
Found at i:107082275 original size:18 final size:18
Alignment explanation
Indices: 107082244--107082280 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
107082234 TTTGTATTTC
* *
107082244 ATTATTATTGTTAATATT
1 ATTATCATTATTAATATT
107082262 ATTATCATTATTAATATT
1 ATTATCATTATTAATATT
107082280 A
1 A
107082281 GTGTATGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (18 bp):
ATTATCATTATTAATATT
Found at i:107084863 original size:18 final size:18
Alignment explanation
Indices: 107084832--107084872 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
107084822 CACAGTTGGG
* *
107084832 GTTGATAACGAAGAGAAA
1 GTTGAGAACAAAGAGAAA
*
107084850 GTTGAGAACAAAGAGGAA
1 GTTGAGAACAAAGAGAAA
107084868 GTTGA
1 GTTGA
107084873 AACCAATGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.46, C:0.05, G:0.32, T:0.17
Consensus pattern (18 bp):
GTTGAGAACAAAGAGAAA
Found at i:107087566 original size:13 final size:13
Alignment explanation
Indices: 107087534--107087573 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
107087524 TTTTAAATTC
*
107087534 TTTCATTTTTATT
1 TTTCATTTTTCTT
*
107087547 TTT-ATTTGTCTT
1 TTTCATTTTTCTT
107087559 TTTCATTTTTCTT
1 TTTCATTTTTCTT
107087572 TT
1 TT
107087574 ACGCCATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.10, C:0.10, G:0.03, T:0.78
Consensus pattern (13 bp):
TTTCATTTTTCTT
Found at i:107088709 original size:19 final size:19
Alignment explanation
Indices: 107088673--107088710 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
107088663 ATTTAACGAT
*
107088673 TTAATTGTTAAAATATATA
1 TTAATTGTTAAAAAATATA
107088692 TTAATTG-TACAAAAATATA
1 TTAATTGTTA-AAAAATATA
107088711 CGAAAAGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (19 bp):
TTAATTGTTAAAAAATATA
Done.