Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 333 of 352
Found at i:107089400 original size:31 final size:30
Alignment explanation
Indices: 107089301--107089405 Score: 95
Period size: 31 Copynumber: 3.4 Consensus size: 30
107089291 TTATATGTGT
* *
107089301 TTGAGGATAAAATTGATAGAATTTGTAAATA
1 TTGAGGATTAAATTGATAGAATATGT-AATA
* * * * *
107089332 TGGAGGGTTAAATTTATTGAATTATGTAAAA
1 TTGAGGATTAAATTGATAGAA-TATGTAATA
* *
107089363 TT-AGGATCAAATTGATAGAATGTGTAAGTA
1 TTGAGGATTAAATTGATAGAATATGTAA-TA
107089393 TTGAGGATTAAAT
1 TTGAGGATTAAAT
107089406 GTGTTATTAT
Statistics
Matches: 56, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
29 6 0.11
30 17 0.30
31 29 0.52
32 4 0.07
ACGTcount: A:0.41, C:0.01, G:0.22, T:0.36
Consensus pattern (30 bp):
TTGAGGATTAAATTGATAGAATATGTAATA
Found at i:107089524 original size:30 final size:31
Alignment explanation
Indices: 107089470--107089532 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 31
107089460 ACAAAAAGTA
*
107089470 ACCAAAATAGAAACAATTTAAAACGTGAGTG
1 ACCAAAATAGAAACAATCTAAAACGTGAGTG
** *
107089501 ACCAAAATAG-AATGATCTAAAACGTTAGTG
1 ACCAAAATAGAAACAATCTAAAACGTGAGTG
107089531 AC
1 AC
107089533 TAAATTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 18 0.64
31 10 0.36
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (31 bp):
ACCAAAATAGAAACAATCTAAAACGTGAGTG
Found at i:107090625 original size:5 final size:6
Alignment explanation
Indices: 107090612--107090646 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
107090602 ATAATTTAAT
107090612 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAA
107090647 AATATAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 21 0.78
8 6 0.22
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:107090634 original size:14 final size:14
Alignment explanation
Indices: 107090615--107090641 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
107090605 ATTTAATAAA
107090615 TAAAAATAAAAATC
1 TAAAAATAAAAATC
107090629 TAAAAATAAAAAT
1 TAAAAATAAAAAT
107090642 AAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAAAATAAAAATC
Found at i:107090646 original size:21 final size:22
Alignment explanation
Indices: 107090589--107090647 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 22
107090579 CAACCTAATC
*
107090589 ATAAAAATTACAAATAATTTAATAA
1 ATAAAAA-TA-AAA-AATCTAATAA
107090614 ATAAAAAT-AAAAATCTAA-AA
1 ATAAAAATAAAAAATCTAATAA
107090634 ATAAAAATAAAAAA
1 ATAAAAATAAAAAA
107090648 ATATAATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 10 0.31
21 11 0.34
22 3 0.09
24 1 0.03
25 7 0.22
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (22 bp):
ATAAAAATAAAAAATCTAATAA
Found at i:107090647 original size:14 final size:14
Alignment explanation
Indices: 107090616--107090650 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
107090606 TTTAATAAAT
**
107090616 AAAAATAAAAATCT
1 AAAAATAAAAATAA
107090630 AAAAATAAAAATAA
1 AAAAATAAAAATAA
107090644 AAAAATA
1 AAAAATA
107090651 TAATTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAAATAAAAATAA
Found at i:107090679 original size:9 final size:9
Alignment explanation
Indices: 107090665--107090724 Score: 66
Period size: 9 Copynumber: 6.7 Consensus size: 9
107090655 TTTATACAAA
107090665 TAATTTGGT
1 TAATTTGGT
*
107090674 TAATTTGGG
1 TAATTTGGT
* *
107090683 TAATTCGTT
1 TAATTTGGT
107090692 TAATTTGGT
1 TAATTTGGT
* *
107090701 TAATTCGAT
1 TAATTTGGT
*
107090710 TAATTCGGT
1 TAATTTGGT
107090719 TAATTT
1 TAATTT
107090725 TATACTTATT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.25, C:0.05, G:0.18, T:0.52
Consensus pattern (9 bp):
TAATTTGGT
Found at i:107090703 original size:27 final size:27
Alignment explanation
Indices: 107090665--107090724 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
107090655 TTTATACAAA
* * *
107090665 TAATTTGGTTAATTTGGGTAATTCGTT
1 TAATTTGGTTAATTCGAGTAATTCGGT
*
107090692 TAATTTGGTTAATTCGATTAATTCGGT
1 TAATTTGGTTAATTCGAGTAATTCGGT
107090719 TAATTT
1 TAATTT
107090725 TATACTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.05, G:0.18, T:0.52
Consensus pattern (27 bp):
TAATTTGGTTAATTCGAGTAATTCGGT
Found at i:107090719 original size:18 final size:18
Alignment explanation
Indices: 107090673--107090723 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
107090663 AATAATTTGG
* *
107090673 TTAATTTGGGTAATTCGT
1 TTAATTTGGTTAATTCGA
107090691 TTAATTTGGTTAATTCGA
1 TTAATTTGGTTAATTCGA
*
107090709 TTAATTCGGTTAATT
1 TTAATTTGGTTAATT
107090724 TTATACTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.25, C:0.06, G:0.18, T:0.51
Consensus pattern (18 bp):
TTAATTTGGTTAATTCGA
Found at i:107093906 original size:13 final size:13
Alignment explanation
Indices: 107093888--107093912 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107093878 ACGAATTTAT
107093888 ATGAAAATAATAA
1 ATGAAAATAATAA
107093901 ATGAAAATAATA
1 ATGAAAATAATA
107093913 TATATACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
ATGAAAATAATAA
Found at i:107098022 original size:10 final size:9
Alignment explanation
Indices: 107098003--107098068 Score: 53
Period size: 10 Copynumber: 7.0 Consensus size: 9
107097993 ATAAATTATT
107098003 TTTTATAAA
1 TTTTATAAA
107098012 TTTTATAAAA
1 TTTTAT-AAA
*
107098022 TTTTATGAA
1 TTTTATAAA
*
107098031 TTTTAATTAA
1 TTTT-ATAAA
**
107098041 TTTCTATTACT
1 TTT-TA-TAAA
107098052 TTTTATAAA
1 TTTTATAAA
107098061 TTTT-TAAA
1 TTTTATAAA
107098069 ACAAATCTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
8 4 0.09
9 18 0.39
10 19 0.41
11 5 0.11
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (9 bp):
TTTTATAAA
Found at i:107100585 original size:37 final size:37
Alignment explanation
Indices: 107100544--107100626 Score: 150
Period size: 37 Copynumber: 2.2 Consensus size: 37
107100534 TGATAATCTT
107100544 GCACTTGGATTGCAAGAA-AAACTGTAAATAATAAACA
1 GCACTTGGATTGCAA-AATAAACTGTAAATAATAAACA
107100581 GCACTTGGATTGCAAAATAAACTGTAAATAATAAACA
1 GCACTTGGATTGCAAAATAAACTGTAAATAATAAACA
107100618 GCACTTGGA
1 GCACTTGGA
107100627 ATTTGTGACA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
36 2 0.04
37 43 0.96
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (37 bp):
GCACTTGGATTGCAAAATAAACTGTAAATAATAAACA
Found at i:107101347 original size:24 final size:24
Alignment explanation
Indices: 107101300--107101349 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
107101290 GAGAAAACTG
*
107101300 ATTTTTTTGTTAAAATTTTAATTC
1 ATTTTTTTGTTAAAATATTAATTC
*
107101324 ATTTTTATTGTTAAAA-ATTGATTC
1 ATTTTT-TTGTTAAAATATTAATTC
107101348 AT
1 AT
107101350 GTATGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.32, C:0.04, G:0.06, T:0.58
Consensus pattern (24 bp):
ATTTTTTTGTTAAAATATTAATTC
Found at i:107101797 original size:13 final size:14
Alignment explanation
Indices: 107101779--107101808 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
107101769 ATAATAAAAC
107101779 TTAATTAAA-TTAA
1 TTAATTAAAGTTAA
107101792 TTAATTAAAGTTAA
1 TTAATTAAAGTTAA
107101806 TTA
1 TTA
107101809 TCATATAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
TTAATTAAAGTTAA
Found at i:107104496 original size:28 final size:30
Alignment explanation
Indices: 107104450--107104505 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
107104440 ATTTTCCCAT
*
107104450 ATATATATACTAAAAAATATAAAAATAACA
1 ATATATATACTAAAAAATAAAAAAATAACA
*
107104480 ATATA-ATAC-AAACAATAAAAAAATAA
1 ATATATATACTAAAAAATAAAAAAATAA
107104506 AAAAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.62
29 4 0.17
30 5 0.21
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (30 bp):
ATATATATACTAAAAAATAAAAAAATAACA
Found at i:107105125 original size:3 final size:3
Alignment explanation
Indices: 107105101--107105171 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
107105091 AATATCCTTG
* * * *
107105101 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
107105148 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
107105172 GTACGTGTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:107105168 original size:23 final size:22
Alignment explanation
Indices: 107105113--107105174 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
107105103 ATTTTTATAT
*
107105113 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
107105134 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
107105156 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
107105175 CGTGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:107105181 original size:23 final size:23
Alignment explanation
Indices: 107105108--107105182 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
107105098 TTGTTATTTT
* *
107105108 TATATTATTAGTATTAT-TAGTAT
1 TATA-TATTATTATTATGTAGTAG
*
107105131 TACTATTATTATTATTATGTATTAG
1 TA-TA-TATTATTATTATGTAGTAG
*
107105156 TATATATTTTTATTATGTACGT-G
1 TATATATTATTATTATGTA-GTAG
107105179 TATA
1 TATA
107105183 CATATATATA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
23 21 0.48
24 17 0.39
25 6 0.14
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (23 bp):
TATATATTATTATTATGTAGTAG
Found at i:107105283 original size:3 final size:3
Alignment explanation
Indices: 107105270--107105308 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
107105260 TATTCCAATG
* *
107105270 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
107105309 GTTTATGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:107118083 original size:70 final size:72
Alignment explanation
Indices: 107117883--107118442 Score: 767
Period size: 72 Copynumber: 7.6 Consensus size: 72
107117873 CAATTCTGTT
*
107117883 AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
107117948 GTAATTTC
65 GTAATTTC
**
107117956 AATTT-TGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
107118020 GTAATTTC
65 GTAATTTC
*
107118028 AATTT-TGTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
107118091 TAATTTC
66 TAATTTC
* * **
107118098 AATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGA
1 AATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
*
107118163 GGTATTTTC
64 GGTAATTTC
* *
107118172 AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
*
107118237 GTATTTTC
65 GTAATTTC
107118245 AATTCCTGTTTCAATTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 AA------TTTC-----TGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
107118310 ACACGCTGAGGTAATTTC
55 ACACGCTGAGGTAATTTC
*
107118328 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-CACGCCGAGG
1 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
107118391 T-ATTTC
66 TAATTTC
**
107118397 AA-TTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTG-GTTGA
1 AATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
107118443 ACCTTTTAAT
Statistics
Matches: 450, Mismatches: 19, Indels: 40
0.88 0.04 0.08
Matches are distributed among these distances:
68 8 0.02
69 12 0.03
70 97 0.22
71 13 0.03
72 116 0.26
73 66 0.15
74 65 0.14
77 4 0.01
79 4 0.01
83 58 0.13
84 7 0.02
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTC
Found at i:107118295 original size:230 final size:223
Alignment explanation
Indices: 107118024--107118442 Score: 687
Period size: 230 Copynumber: 1.8 Consensus size: 223
107118014 GCTGAGGTAA
*
107118024 TTTCAATTTTGTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 TTTCAATTTTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
107118089 GGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
66 GGTAATTTCAATTTCTGTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--G
** **
107118154 ACACATTGAGGTATTTTCAATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
127 ACACACCGAGGTA-TTTCAA-TTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTG-GTTG
107118218 AGCCTCAAGACACGTTGAGGTATTTTCAATTCCTG
189 AGCCTCAAGACACGTTGAGGTATTTTCAATTCCTG
107118253 TTTCAATTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 TTTCAATTTTGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
* *
107118318 AGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCA
65 AGGTAATTTCAATTTCTGTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACA
*
107118383 CGCCGAGGTATTTCAATTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGGTTGA
130 CACCGAGGTATTTCAATTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGGTTGA
107118443 ACCTTTTAAT
Statistics
Matches: 180, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
224 13 0.07
225 34 0.19
226 10 0.06
228 38 0.21
229 16 0.09
230 69 0.38
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (223 bp):
TTTCAATTTTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
GGTAATTTCAATTTCTGTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACAC
ACCGAGGTATTTCAATTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGGTTGAGCCTCA
AGACACGTTGAGGTATTTTCAATTCCTG
Found at i:107118320 original size:83 final size:79
Alignment explanation
Indices: 107118168--107118402 Score: 310
Period size: 83 Copynumber: 3.0 Consensus size: 79
107118158 ATTGAGGTAT
* *
107118168 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
1 TTTCAATTT-TGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
107118233 TGAGGTATTTTCAATTCC
64 TGAGGTA-TTTCAATT-C
107118251 TGTTTCAATTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 --TTTCAATTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
107118316 TGAGG----T-AA---
64 TGAGGTATTTCAATTC
*
107118324 TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-CACGCC
1 TTTCAATTT-TGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
107118387 GAGGTATTTCAATTC
65 GAGGTATTTCAATTC
107118402 T
1 T
107118403 ACTTTCAAAA
Statistics
Matches: 138, Mismatches: 3, Indels: 25
0.83 0.02 0.15
Matches are distributed among these distances:
70 9 0.07
71 11 0.08
72 45 0.33
74 1 0.01
75 2 0.01
77 2 0.01
78 2 0.01
83 50 0.36
84 7 0.05
85 9 0.07
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (79 bp):
TTTCAATTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
AGGTATTTCAATTC
Found at i:107118335 original size:156 final size:157
Alignment explanation
Indices: 107118094--107118378 Score: 493
Period size: 156 Copynumber: 1.8 Consensus size: 157
107118084 GCTGAGGTAA
107118094 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACA
1 TTTCAATTTCTGTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACA
* *
107118159 TTGAGGTATTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65 CTGAGGTAATTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
107118224 AAGACACGTTGAGGTATTTTCAATTCCTG
129 AAGACACGTTGAGGTATTTTCAATTCCTG
* * *
107118253 TTTCAATTT-TGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTGTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACAC
107118316 TGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 TGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
107118379 GGCACGCCGA
Statistics
Matches: 121, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
155 38 0.31
156 68 0.56
158 6 0.05
159 9 0.07
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (157 bp):
TTTCAATTTCTGTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACAC
TGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTATTTTCAATTCCTG
Found at i:107118427 original size:372 final size:366
Alignment explanation
Indices: 107117752--107118843 Score: 1175
Period size: 372 Copynumber: 3.1 Consensus size: 366
107117742 CTTTCCAAGG
*
107117752 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTT-AGGTATTTT-AATTTT-
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTG
*
107117814 TTTTCAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTC-GACGCGTTGAGGTATTTTCAAT
66 TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGTTGAGGTATTTTCAAT
107117877 TCTG-TT-AATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
131 TCTGTTTCAATTT-TG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
**
107117940 ACGCTGAGGTAATTTCAATTT-TGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
194 ACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * ** *
107118004 CTCAGGACACGCTGAGGTAATTTCAATTTTGTTTTC--AAAATCAACTCATATTGCTAGAGGTGA
259 CTC-GG-CACGCCGAGGT-ATTTCAATTCTACTTTCAAAAAATCAACTCATATTGCGAGAGGTGA
107118067 GTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAA
321 GTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTC-AA
*
107118114 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT-T
107118179 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
65 GTTTTC--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACGTTGAGGTATTTT
107118244 CAATTCCTGTTTCAATTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
127 CAATT-CTGTTTCAATTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
107118309 GACACGCTGAGGTAATTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTG
191 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
107118373 AGCCTCGGCACGCCGAGGTATTTCAATTCTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
256 AGCCTCGGCACGCCGAGGTATTTCAATTCTACTTTC-AAAAAATCAACTCATATTGCGAGAGGTG
** * *
107118438 -G-T-----T---GA-AC-CT--TTTAATTTC---TACT-TTTTC--
320 AGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAA
* * * *
107118465 AAAATCAGCTCATATTGC-AGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA-TTTT
* ** * **
107118528 GTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCCGAGGTATTT
65 GT-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-G--ACACGTTGAGGTATTT
* * *
107118593 TCAAAATCTGTTTGCAAATTCTGTGTTCAAAAATCAACTCATATTGCGAGAGGTG-G-T-----T
126 TC-AATTCTGTTT-C-AATTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
** * *
107118651 ---GA-AC-CT--TTTAATTTC---TACT-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGGG
188 CAGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAG
**
107118705 TTGA--------A--CC----T-TTT-AATTTCTACTTTTTCAAAAGTTCAACTCATATTGCGAG
253 TTGAGCCTCGGCACGCCGAGGTATTTCAA-TTCTAC--TTTCAAAAAATCAACTCATATTGCGAG
**
107118754 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAA
315 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAA
* *
107118806 AAAATCAACTCATATTGCGAAAAGTGAGTTGAGCCTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
107118844 GTTCACATGT
Statistics
Matches: 637, Mismatches: 43, Indels: 119
0.80 0.05 0.15
Matches are distributed among these distances:
319 2 0.00
320 9 0.01
321 25 0.04
322 5 0.01
323 1 0.00
325 2 0.00
327 1 0.00
328 1 0.00
331 2 0.00
332 2 0.00
333 2 0.00
334 5 0.01
335 42 0.07
338 10 0.02
339 4 0.01
340 2 0.00
341 19 0.03
342 18 0.03
345 1 0.00
347 1 0.00
348 36 0.06
349 21 0.03
350 46 0.07
351 22 0.03
352 37 0.06
354 4 0.01
355 3 0.00
358 7 0.01
360 2 0.00
361 2 0.00
362 47 0.07
363 9 0.01
364 5 0.01
365 2 0.00
366 5 0.01
368 22 0.03
369 28 0.04
370 11 0.02
371 25 0.04
372 133 0.21
373 11 0.02
374 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (366 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTTG
TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGTTGAGGTATTTTCAAT
TCTGTTTCAATTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTAATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CGGCACGCCGAGGTATTTCAATTCTACTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAA
Found at i:107118546 original size:123 final size:124
Alignment explanation
Indices: 107118336--107118566 Score: 317
Period size: 123 Copynumber: 1.9 Consensus size: 124
107118326 TCAATTTCTG
107118336 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACGCCGAGGTATTTCAATT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACGCCGAGGTATTTCAATT
107118401 CTACTTTCAAAAAAATCAACTCATATTGCGAGAGGTG-GTTGAACCTTTTAATTTCTACT
66 CTACTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACT
* *
107118460 TTTTC-AAAATCAGCTCATATTGC-AGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTCAA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACGCCGAGGTA-TTTCAA
* ** ** **
107118523 TTTTTGTGTT-TTAATTTCAACTCATATTGCGAGAGGTGAGTTGA
64 TTCTACT-TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
107118567 GCCTCAGGTC
Statistics
Matches: 94, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
122 18 0.19
123 54 0.57
124 20 0.21
125 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (124 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACGCCGAGGTATTTCAATT
CTACTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACT
Found at i:107118683 original size:55 final size:56
Alignment explanation
Indices: 107118621--107118754 Score: 243
Period size: 56 Copynumber: 2.4 Consensus size: 56
107118611 TTCTGTGTTC
107118621 AAAAATCAACTCATATTGCGAGAGGT-GGTTGAACCTTTTAATTTCTACTTTTTCA
1 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCA
107118676 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCA
1 AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCA
**
107118732 AAAGTTCAACTCATATTGCGAGA
1 AAAAATCAACTCATATTGCGAGA
107118755 AATGAGTTGA
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
55 26 0.34
56 50 0.66
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (56 bp):
AAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCA
Found at i:107120136 original size:14 final size:14
Alignment explanation
Indices: 107120119--107120168 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
107120109 TATACTAAAA
107120119 AATATAAAAATAAC
1 AATATAAAAATAAC
*
107120133 AATATAATACA-AAC
1 AATATAA-AAATAAC
*
107120147 AATAAAAAAATAA-
1 AATATAAAAATAAC
*
107120160 AAAATAAAA
1 AATATAAAA
107120169 TTTTTTACCT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
13 9 0.31
14 18 0.62
15 2 0.07
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (14 bp):
AATATAAAAATAAC
Found at i:107120150 original size:28 final size:30
Alignment explanation
Indices: 107120104--107120159 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
107120094 ATTTTCCCAT
*
107120104 ATATATATACTAAAAAATATAAAAATAACA
1 ATATATATACTAAAAAATAAAAAAATAACA
*
107120134 ATATA-ATAC-AAACAATAAAAAAATAA
1 ATATATATACTAAAAAATAAAAAAATAA
107120160 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.62
29 4 0.17
30 5 0.21
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (30 bp):
ATATATATACTAAAAAATAAAAAAATAACA
Found at i:107120230 original size:30 final size:30
Alignment explanation
Indices: 107120196--107120474 Score: 558
Period size: 30 Copynumber: 9.3 Consensus size: 30
107120186 CCACCGCACG
107120196 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
1 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
107120226 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
1 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
107120256 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
1 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
107120286 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
1 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
107120316 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
1 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
107120346 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
1 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
107120376 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
1 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
107120406 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
1 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
107120436 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
1 CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
107120466 CGGTGGCCG
1 CGGTGGCCG
107120475 TCCGGTGACC
Statistics
Matches: 249, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 249 1.00
ACGTcount: A:0.03, C:0.40, G:0.47, T:0.10
Consensus pattern (30 bp):
CGGTGGCCGGCGTCGGCGCCGGCGAGCCTC
Found at i:107121009 original size:3 final size:3
Alignment explanation
Indices: 107120985--107121055 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
107120975 AATATCCTTG
* * * *
107120985 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
107121032 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
107121056 GTACGTGTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:107121052 original size:23 final size:22
Alignment explanation
Indices: 107120997--107121058 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
107120987 ATTTTTATAT
*
107120997 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
107121018 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
107121040 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
107121059 CGTGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:107121065 original size:23 final size:23
Alignment explanation
Indices: 107120992--107121066 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
107120982 TTGTTATTTT
* *
107120992 TATATTATTAGTATTAT-TAGTAT
1 TATA-TATTATTATTATGTAGTAG
*
107121015 TACTATTATTATTATTATGTATTAG
1 TA-TA-TATTATTATTATGTAGTAG
*
107121040 TATATATTTTTATTATGTACGT-G
1 TATATATTATTATTATGTA-GTAG
107121063 TATA
1 TATA
107121067 CATATATATA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
23 21 0.48
24 17 0.39
25 6 0.14
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (23 bp):
TATATATTATTATTATGTAGTAG
Found at i:107121122 original size:13 final size:14
Alignment explanation
Indices: 107121074--107121121 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
107121064 ATACATATAT
107121074 ATATTTTCATATTTA
1 ATATTTT-ATATTTA
*
107121089 ATATTTT-TATTTC
1 ATATTTTATATTTA
107121102 A-A-TTTAT-TTTA
1 ATATTTTATATTTA
107121113 ATATTTTAT
1 ATATTTTAT
107121122 TAATGTTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 7 0.25
12 3 0.11
13 11 0.39
15 7 0.25
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (14 bp):
ATATTTTATATTTA
Found at i:107121168 original size:3 final size:3
Alignment explanation
Indices: 107121155--107121195 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
107121145 TATTCCAATG
*
107121155 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
107121196 GTTTATGCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:107122819 original size:21 final size:23
Alignment explanation
Indices: 107122790--107122843 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
107122780 CAAATGTGTT
*
107122790 AAAATTATTAATT-AAA-AATAA
1 AAAAGTATTAATTAAAATAATAA
**
107122811 AAAAGTATTTTTTAAAATAATAA
1 AAAAGTATTAATTAAAATAATAA
*
107122834 AAATGTATTA
1 AAAAGTATTA
107122844 CAATCTAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 10 0.38
22 3 0.12
23 13 0.50
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
AAAAGTATTAATTAAAATAATAA
Found at i:107123512 original size:19 final size:19
Alignment explanation
Indices: 107123490--107123549 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 19
107123480 AAAATTTATT
107123490 AAATTTTAATAAAAATATA
1 AAATTTTAATAAAAATATA
*
107123509 AAA-TTTATTAAAAAT-TA
1 AAATTTTAATAAAAATATA
* *
107123526 GAATTTTTTATAAAAATAGTA
1 -AAATTTTAATAAAAATA-TA
107123547 AAA
1 AAA
107123550 AATAAAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
17 2 0.06
18 13 0.41
19 13 0.41
20 2 0.06
21 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
AAATTTTAATAAAAATATA
Found at i:107123539 original size:37 final size:38
Alignment explanation
Indices: 107123492--107123579 Score: 101
Period size: 37 Copynumber: 2.3 Consensus size: 38
107123482 AATTTATTAA
* ** *
107123492 ATTTTAATAAAAATA-TAAAATTTATTAAAAATTAG-AAT
1 ATTTTTATAAAAATAGTAAAAAATA-AAAAAATT-GTAAT
107123530 -TTTTTATAAAAATAGTAAAAAATAAAAAAATTGTAAT
1 ATTTTTATAAAAATAGTAAAAAATAAAAAAATTGTAAT
107123567 ATTTTTATAAAAA
1 ATTTTTATAAAAA
107123580 GCATAAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
36 1 0.02
37 23 0.53
38 19 0.44
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (38 bp):
ATTTTTATAAAAATAGTAAAAAATAAAAAAATTGTAAT
Found at i:107123572 original size:38 final size:38
Alignment explanation
Indices: 107123492--107123589 Score: 103
Period size: 38 Copynumber: 2.6 Consensus size: 38
107123482 AATTTATTAA
* ** *
107123492 ATTTTAATAAAAATATAAAATTTATTAAAAATTAGAAT
1 ATTTTTATAAAAATATAAAAAATATAAAAAATTAGAAT
107123530 -TTTTTATAAAAATAGTAAAAAATA-AAAAAATT-GTAAT
1 ATTTTTATAAAAATA-TAAAAAATATAAAAAATTAG-AAT
*
107123567 ATTTTTATAAAAAGCATAAAAAA
1 ATTTTTATAAAAA-TATAAAAAA
107123590 ATTTATAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
36 1 0.02
37 23 0.45
38 26 0.51
39 1 0.02
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (38 bp):
ATTTTTATAAAAATATAAAAAATATAAAAAATTAGAAT
Found at i:107123594 original size:21 final size:21
Alignment explanation
Indices: 107123570--107123610 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
107123560 TTGTAATATT
107123570 TTTATAAAAAGCATAAAAAAA
1 TTTATAAAAAGCATAAAAAAA
* *
107123591 TTTATAAAATGCATCAAAAA
1 TTTATAAAAAGCATAAAAAA
107123611 GTCCTTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.61, C:0.07, G:0.05, T:0.27
Consensus pattern (21 bp):
TTTATAAAAAGCATAAAAAAA
Found at i:107123907 original size:19 final size:19
Alignment explanation
Indices: 107123885--107123927 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
107123875 TTTCTATATG
*
107123885 TTTTATACTTTTTTATGAT
1 TTTTATAATTTTTTATGAT
*
107123904 TTTTATAATTTTTTCTGAT
1 TTTTATAATTTTTTATGAT
107123923 TTTTA
1 TTTTA
107123928 ATAAAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTTATAATTTTTTATGAT
Found at i:107123944 original size:27 final size:28
Alignment explanation
Indices: 107123914--107123972 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
107123904 TTTTATAATT
107123914 TTTTCTGATTTTTAATAAAATTTAA-AA
1 TTTTCTGATTTTTAATAAAATTTAATAA
* * **
107123941 TTTTTTTATTTTTTCTAAAATTTAATAA
1 TTTTCTGATTTTTAATAAAATTTAATAA
107123969 TTTT
1 TTTT
107123973 TATAGCTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (28 bp):
TTTTCTGATTTTTAATAAAATTTAATAA
Found at i:107125633 original size:9 final size:9
Alignment explanation
Indices: 107125619--107125652 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
107125609 ATTCATGCTT
107125619 TTATAGATA
1 TTATAGATA
107125628 TTATAGATAGA
1 TTATAGAT--A
107125639 TTATAGATA
1 TTATAGATA
107125648 TTATA
1 TTATA
107125653 CAAGGGATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 14 0.61
11 9 0.39
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (9 bp):
TTATAGATA
Found at i:107126404 original size:33 final size:33
Alignment explanation
Indices: 107126362--107126459 Score: 178
Period size: 33 Copynumber: 3.0 Consensus size: 33
107126352 TTAAATGATA
107126362 AGGATAGGAAGAAAAGTGATAAAGAATTAGCAG
1 AGGATAGGAAGAAAAGTGATAAAGAATTAGCAG
107126395 AGGATAGGAAGAAAAGTGATAAAGAATTAGCAG
1 AGGATAGGAAGAAAAGTGATAAAGAATTAGCAG
* *
107126428 AGGATAGGAAGAAAAGTGATGAAGAAATAGCA
1 AGGATAGGAAGAAAAGTGATAAAGAATTAGCA
107126460 AAGAAGTTGT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.52, C:0.03, G:0.31, T:0.14
Consensus pattern (33 bp):
AGGATAGGAAGAAAAGTGATAAAGAATTAGCAG
Found at i:107127107 original size:15 final size:16
Alignment explanation
Indices: 107127080--107127110 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
107127070 ATATACTAGA
107127080 TTTTATAATTTAATTT
1 TTTTATAATTTAATTT
107127096 TTTTATAA-TTAATTT
1 TTTTATAATTTAATTT
107127111 CTCAATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTATAATTTAATTT
Found at i:107137238 original size:45 final size:45
Alignment explanation
Indices: 107137174--107137263 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
107137164 CACAGCATTG
107137174 TTTATATTCACTTTTCTTGCTACACAAGCAAGCTGAGTCCATAAA
1 TTTATATTCACTTTTCTTGCTACACAAGCAAGCTGAGTCCATAAA
107137219 TTTATATTCACTTTTCTTGCTACACAAGCAAGCTGAGTCCATAAA
1 TTTATATTCACTTTTCTTGCTACACAAGCAAGCTGAGTCCATAAA
107137264 CAAAGGCATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (45 bp):
TTTATATTCACTTTTCTTGCTACACAAGCAAGCTGAGTCCATAAA
Found at i:107139743 original size:30 final size:31
Alignment explanation
Indices: 107139703--107139772 Score: 106
Period size: 30 Copynumber: 2.3 Consensus size: 31
107139693 AGGCTTAATG
* * *
107139703 TTTTGTCCCCTGTGATATAGT-AAAATCTCA
1 TTTTGACCCCTGTAATATAGTAAAAATATCA
107139733 TTTTGACCCCTGTAATATAGTAAAAATATCA
1 TTTTGACCCCTGTAATATAGTAAAAATATCA
107139764 TTTTGACCC
1 TTTTGACCC
107139773 TTTTCCTTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 19 0.53
31 17 0.47
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (31 bp):
TTTTGACCCCTGTAATATAGTAAAAATATCA
Found at i:107144391 original size:17 final size:17
Alignment explanation
Indices: 107144371--107144406 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
107144361 GGCAATTAAA
107144371 GTATAAGGGCTTAATTG
1 GTATAAGGGCTTAATTG
107144388 GTATAAGGGCTTAATTG
1 GTATAAGGGCTTAATTG
107144405 GT
1 GT
107144407 CCTTGGTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.06, G:0.31, T:0.36
Consensus pattern (17 bp):
GTATAAGGGCTTAATTG
Found at i:107149537 original size:40 final size:39
Alignment explanation
Indices: 107149463--107149539 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 39
107149453 ACATGAAACA
*
107149463 TGAGTCTAAATAAGTTTTGTATAATAAAGTAGTATCTATG
1 TGAGTCTAAATAAGTCTTGTATAATAAAG-AGTATCTATG
107149503 TGAGTCTAAATAAGTCTTGTATGATATAAA-AGTATCT
1 TGAGTCTAAATAAGTCTTGTAT-A-ATAAAGAGTATCT
107149540 CATGAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
40 28 0.82
41 1 0.03
42 5 0.15
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (39 bp):
TGAGTCTAAATAAGTCTTGTATAATAAAGAGTATCTATG
Found at i:107157148 original size:6 final size:6
Alignment explanation
Indices: 107157135--107157170 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
107157125 TGATGGTTTT
* *
107157135 GCTTTG GTTTTG GTTTTG GCTTTG GCTTTG GCTTTG
1 GCTTTG GCTTTG GCTTTG GCTTTG GCTTTG GCTTTG
107157171 CATTTTGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.11, G:0.33, T:0.56
Consensus pattern (6 bp):
GCTTTG
Found at i:107157158 original size:18 final size:18
Alignment explanation
Indices: 107157128--107157170 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
107157118 GGGATTGTGA
*
107157128 TGGTTTT-GCTTTGGTTT
1 TGGTTTTGGCTTTGGCTT
107157145 TGGTTTTGGCTTTGGCTT
1 TGGTTTTGGCTTTGGCTT
*
107157163 TGGCTTTG
1 TGGTTTTG
107157171 CATTTTGCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.00, C:0.09, G:0.33, T:0.58
Consensus pattern (18 bp):
TGGTTTTGGCTTTGGCTT
Found at i:107158161 original size:13 final size:12
Alignment explanation
Indices: 107158125--107158193 Score: 50
Period size: 13 Copynumber: 5.3 Consensus size: 12
107158115 GTAGGCATAA
107158125 ATATATTTTAATT
1 ATAT-TTTTAATT
*
107158138 AT-TAATTTAATT
1 ATAT-TTTTAATT
*
107158150 ATATTTTGTAATA
1 ATATTTT-TAATT
107158163 ATTATTTTTAATT
1 A-TATTTTTAATT
*
107158176 ATAATTATTTAAAT
1 AT-ATT-TTTAATT
107158190 ATAT
1 ATAT
107158194 ATAATTTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
12 14 0.30
13 18 0.39
14 14 0.30
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (12 bp):
ATATTTTTAATT
Found at i:107158161 original size:25 final size:26
Alignment explanation
Indices: 107158125--107158178 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
107158115 GTAGGCATAA
*
107158125 ATATATTTTAATTATTA-ATTTAATT
1 ATATATTTTAATAATTATATTTAATT
*
107158150 ATAT-TTTGTAATAATTATTTTTAATT
1 ATATATTT-TAATAATTATATTTAATT
107158176 ATA
1 ATA
107158179 ATTATTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.12
25 12 0.48
26 10 0.40
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (26 bp):
ATATATTTTAATAATTATATTTAATT
Found at i:107158179 original size:16 final size:16
Alignment explanation
Indices: 107158139--107158185 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
107158129 ATTTTAATTA
107158139 TTAATT-TAATTATATT
1 TTAATTATAATTAT-TT
* *
107158155 TT-GTAATAATTATTT
1 TTAATTATAATTATTT
107158170 TTAATTATAATTATTT
1 TTAATTATAATTATTT
107158186 AAATATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 5 0.20
16 20 0.80
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (16 bp):
TTAATTATAATTATTT
Found at i:107167398 original size:8 final size:8
Alignment explanation
Indices: 107167375--107167413 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
107167365 AAGATTTTTT
107167375 TTATATTTA
1 TTATA-TTA
*
107167384 GTATATTA
1 TTATATTA
107167392 TTATATTA
1 TTATATTA
107167400 TTATATTA
1 TTATATTA
107167408 TTATAT
1 TTATAT
107167414 AATAAAGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
8 24 0.86
9 4 0.14
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (8 bp):
TTATATTA
Found at i:107167446 original size:5 final size:5
Alignment explanation
Indices: 107167436--107167462 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
107167426 TTATGTTTTA
107167436 ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT AT
107167463 AAACTAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:107167978 original size:15 final size:14
Alignment explanation
Indices: 107167926--107167992 Score: 80
Period size: 14 Copynumber: 4.7 Consensus size: 14
107167916 GTTTGCAGGT
* * *
107167926 AAAATGTTTTCCGT
1 AAAATGATTTCTGG
*
107167940 AAAATGATTTCTGA
1 AAAATGATTTCTGG
*
107167954 AAAATAATTTCTTGG
1 AAAATGATTTC-TGG
107167969 AAAATGATTTCTGG
1 AAAATGATTTCTGG
107167983 AAAATGATTT
1 AAAATGATTT
107167993 ACTTTTCTGG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
14 34 0.74
15 12 0.26
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:107169655 original size:15 final size:15
Alignment explanation
Indices: 107169635--107169691 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
107169625 CGATGAATTT
107169635 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
107169650 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
107169665 ATTGAATTTATATTG
1 ATTGAATTTATATTG
107169680 ATTGAA-TTATAT
1 ATTGAATTTATAT
107169692 AATATATGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:107170112 original size:21 final size:21
Alignment explanation
Indices: 107170073--107170168 Score: 120
Period size: 21 Copynumber: 4.5 Consensus size: 21
107170063 AGGCACTTTA
107170073 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
*
107170096 TGTGTCGTATCAAGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
107170117 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
107170138 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
107170159 TGTGTCGTAT
1 TGTGTCGTAT
107170169 ACTGATCAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
21 56 0.86
23 9 0.14
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:107170163 original size:42 final size:42
Alignment explanation
Indices: 107170060--107170168 Score: 146
Period size: 42 Copynumber: 2.5 Consensus size: 42
107170050 TGCTTTACCG
107170060 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTA--TCAGGCACCTCGTGTGTCGT
* * **
107170104 ATCAAGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
* *
107170146 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
107170169 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 37 0.67
44 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.36
Consensus pattern (42 bp):
ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:107171789 original size:19 final size:19
Alignment explanation
Indices: 107171767--107171845 Score: 62
Period size: 18 Copynumber: 4.3 Consensus size: 19
107171757 TAATAAAAAT
107171767 ATAAAATAATAATATGTAC
1 ATAAAATAATAATATGTAC
*
107171786 AT-AAAT-ATATATATGTGC
1 ATAAAATAATA-ATATGTAC
*
107171804 ATATAATAA-AAGTATGTA-
1 ATAAAATAATAA-TATGTAC
*
107171822 AT--AATAATAATATCTAC
1 ATAAAATAATAATATGTAC
107171839 AATAAAA
1 -ATAAAA
107171846 GAAAATATTA
Statistics
Matches: 47, Mismatches: 4, Indels: 17
0.69 0.06 0.25
Matches are distributed among these distances:
16 10 0.21
17 5 0.11
18 18 0.38
19 11 0.23
20 3 0.06
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.33
Consensus pattern (19 bp):
ATAAAATAATAATATGTAC
Found at i:107171939 original size:19 final size:19
Alignment explanation
Indices: 107171904--107171951 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
107171894 CAACAATAAT
107171904 ATAAAATA-ATGATATGTAC
1 ATAAAATATAT-ATATGTAC
107171923 A-AAATATATATATATGTAC
1 ATAAA-ATATATATATGTAC
107171942 ATAAAATATA
1 ATAAAATATA
107171952 CACTAATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.12
19 18 0.69
20 5 0.19
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (19 bp):
ATAAAATATATATATGTAC
Found at i:107171960 original size:21 final size:20
Alignment explanation
Indices: 107171923--107171965 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
107171913 TGATATGTAC
*
107171923 AAAATATATATATATGTACAT
1 AAAATATACATATATGTA-AT
107171944 AAAATATACACTA-ATGTAAT
1 AAAATATACA-TATATGTAAT
107171964 AA
1 AA
107171966 TAATTATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 14 0.70
22 2 0.10
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAATATACATATATGTAAT
Found at i:107172089 original size:34 final size:32
Alignment explanation
Indices: 107172029--107172094 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 32
107172019 ATATGGTATT
* *
107172029 TTTAAAATATATATATATGTATATATAATAATA
1 TTTAAAATATATACATAAGTATATATAA-AATA
107172062 TTTAAGAATATATACATAAG-ATGATATAAAATA
1 TTTAA-AATATATACATAAGTAT-ATATAAAATA
107172095 CATACATGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 11 0.38
34 18 0.62
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (32 bp):
TTTAAAATATATACATAAGTATATATAAAATA
Found at i:107172166 original size:11 final size:11
Alignment explanation
Indices: 107172139--107172183 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
107172129 TTGCATTAAA
*
107172139 AAAATATATAC
1 AAAATATATAT
*
107172150 ATAATATATAT
1 AAAATATATAT
*
107172161 AAAATACATAT
1 AAAATATATAT
*
107172172 AATATATATAT
1 AAAATATATAT
107172183 A
1 A
107172184 CGTATTAGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (11 bp):
AAAATATATAT
Found at i:107172906 original size:11 final size:11
Alignment explanation
Indices: 107172872--107172909 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
107172862 ATATGTATAT
107172872 AAAAAGAAAGA
1 AAAAAGAAAGA
*
107172883 AAAAA-AAA-C
1 AAAAAGAAAGA
107172892 AAAAAGAAAGA
1 AAAAAGAAAGA
107172903 AAAAAGA
1 AAAAAGA
107172910 TTCGAAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 5 0.22
10 6 0.26
11 12 0.52
ACGTcount: A:0.84, C:0.03, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAGA
Found at i:107172937 original size:20 final size:19
Alignment explanation
Indices: 107172872--107172938 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 19
107172862 ATATGTATAT
*
107172872 AAAAAGAAAGAAAAAAAAA
1 AAAAAGAAAGAAAAAAGAA
*
107172891 CAAAAAGAAAGAAAAAAGATT
1 -AAAAAGAAAGAAAAAAGA-A
**
107172912 CGAAAGAAAAGAAAAAAGAA
1 AAAAAG-AAAGAAAAAAGAA
107172932 AAAAAGA
1 AAAAAGA
107172939 TGCAAACCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
19 1 0.03
20 25 0.66
21 12 0.32
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAAAGAAAGAAAAAAGAA
Found at i:107173927 original size:30 final size:30
Alignment explanation
Indices: 107173893--107173971 Score: 149
Period size: 30 Copynumber: 2.6 Consensus size: 30
107173883 GTGACTCGAG
107173893 GCTCAACTCACCTCTCGCAGAAATTAAAAA
1 GCTCAACTCACCTCTCGCAGAAATTAAAAA
107173923 GCTCAACTCACCTCTCGCAGAAATTAAAAA
1 GCTCAACTCACCTCTCGCAGAAATTAAAAA
*
107173953 ACTCAACTCACCTCTCGCA
1 GCTCAACTCACCTCTCGCA
107173972 ATATGAGTTG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.37, C:0.34, G:0.09, T:0.20
Consensus pattern (30 bp):
GCTCAACTCACCTCTCGCAGAAATTAAAAA
Found at i:107178586 original size:21 final size:22
Alignment explanation
Indices: 107178560--107178606 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
107178550 CTCTGCTCAA
*
107178560 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
107178581 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
107178603 ACTC
1 ACTC
107178607 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:107188055 original size:57 final size:59
Alignment explanation
Indices: 107187971--107188103 Score: 173
Period size: 58 Copynumber: 2.3 Consensus size: 59
107187961 ATTCATATAA
* *
107187971 TAATAATTATATTAAAAATTTTATTAAATTATATATTA-TTTTATTAAATTATATTTAG
1 TAATAATTATATTAAAAATATGATTAAATTATATATTATTTTTATTAAATTATATTTAG
* * * *
107188029 TAATAATTATGTT-AAAATATGATTAAATTATTTATTATTTTTATTAAATTATTTTTAA
1 TAATAATTATATTAAAAATATGATTAAATTATATATTATTTTTATTAAATTATATTTAG
*
107188087 CAATAATCT-TATTAAAA
1 TAATAAT-TATATTAAAA
107188104 TTTAATAATA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
57 21 0.33
58 39 0.61
59 4 0.06
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (59 bp):
TAATAATTATATTAAAAATATGATTAAATTATATATTATTTTTATTAAATTATATTTAG
Found at i:107188290 original size:16 final size:16
Alignment explanation
Indices: 107188269--107188307 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
107188259 TAAATTACTG
107188269 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
107188285 ATTACACCTCTATTCC
1 ATTACAGCTCTATTCC
107188301 ATTACAG
1 ATTACAG
107188308 TGAACTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.28, C:0.31, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:107188470 original size:19 final size:19
Alignment explanation
Indices: 107188442--107188478 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
107188432 TATTAACTAA
*
107188442 TTTATATTTAAATATTTTT
1 TTTATATTTAAAAATTTTT
*
107188461 TTTATTTTTAAAAATTTT
1 TTTATATTTAAAAATTTT
107188479 GTAATGTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTATATTTAAAAATTTTT
Found at i:107190467 original size:20 final size:21
Alignment explanation
Indices: 107190439--107190478 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
107190429 GTACATTTTT
*
107190439 TAAAGTTTATAT-ATATAAAC
1 TAAAATTTATATGATATAAAC
*
107190459 TAAAATTTATGTGATATAAA
1 TAAAATTTATATGATATAAA
107190479 TTTAATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (21 bp):
TAAAATTTATATGATATAAAC
Found at i:107203820 original size:21 final size:21
Alignment explanation
Indices: 107203781--107203821 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
107203771 CTAACTATAA
*
107203781 TAATTAAAATTTCATAAATTT
1 TAATTAAAATTACATAAATTT
107203802 TAATTAAAATGTACA-AAATT
1 TAATTAAAAT-TACATAAATT
107203822 AATTATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.41
Consensus pattern (21 bp):
TAATTAAAATTACATAAATTT
Found at i:107204355 original size:20 final size:20
Alignment explanation
Indices: 107204330--107204373 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
107204320 GAAAGGAATA
*
107204330 ATATAT-GTGTGTGTATATAT
1 ATATATAGTGTGTG-AGATAT
107204350 ATATATCAGTGTGTGAGATAT
1 ATATAT-AGTGTGTGAGATAT
107204371 ATA
1 ATA
107204374 ACATGTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.29
21 8 0.38
22 7 0.33
ACGTcount: A:0.34, C:0.02, G:0.20, T:0.43
Consensus pattern (20 bp):
ATATATAGTGTGTGAGATAT
Found at i:107204519 original size:41 final size:41
Alignment explanation
Indices: 107204474--107204553 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
107204464 TTTTCTCTTT
107204474 TTATCTCCATTTAGAGCCTCTTTGTACCTATATATATATCA
1 TTATCTCCATTTAGAGCCTCTTTGTACCTATATATATATCA
* *
107204515 TTATCTTCATTTAGAGCTTCTTTGTACCTATATATATAT
1 TTATCTCCATTTAGAGCCTCTTTGTACCTATATATATAT
107204554 ATAGGTAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.47
Consensus pattern (41 bp):
TTATCTCCATTTAGAGCCTCTTTGTACCTATATATATATCA
Found at i:107205006 original size:26 final size:24
Alignment explanation
Indices: 107204976--107205025 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
107204966 AAATAAAAAA
**
107204976 ATTTAAAATTATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
107205002 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
107205026 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:107205045 original size:21 final size:21
Alignment explanation
Indices: 107204996--107205054 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
107204986 ATAATAAATC
*
107204996 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
107205016 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
107205038 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
107205055 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:107205136 original size:22 final size:21
Alignment explanation
Indices: 107205077--107205137 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
107205067 TACAAAATTG
*
107205077 AAAATATAATAAAAAATGATT
1 AAAATAAAATAAAAAATGATT
* * **
107205098 ATATTAAAAATTTAAAATGATT
1 AAAAT-AAAATAAAAAATGATT
107205120 AAAAATAAAATAAAAAAT
1 -AAAATAAAATAAAAAAT
107205138 ATACAAATAT
Statistics
Matches: 29, Mismatches: 9, Indels: 3
0.71 0.22 0.07
Matches are distributed among these distances:
21 3 0.10
22 23 0.79
23 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (21 bp):
AAAATAAAATAAAAAATGATT
Found at i:107210313 original size:10 final size:10
Alignment explanation
Indices: 107210300--107210334 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
107210290 ATAAAAAATT
107210300 ATAATTAATA
1 ATAATTAATA
* *
107210310 ATAATAAATT
1 ATAATTAATA
107210320 ATAATTAATA
1 ATAATTAATA
107210330 ATAAT
1 ATAAT
107210335 ACTTTTATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
ATAATTAATA
Found at i:107210318 original size:20 final size:20
Alignment explanation
Indices: 107210289--107210335 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
107210279 AGTACAATTA
*
107210289 AATAAAAAATTATAATTAAT
1 AATAATAAATTATAATTAAT
107210309 AATAATAAATTATAATTAAT
1 AATAATAAATTATAATTAAT
107210329 AATAATA
1 AATAATA
107210336 CTTTTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AATAATAAATTATAATTAAT
Found at i:107213734 original size:3 final size:3
Alignment explanation
Indices: 107213728--107213909 Score: 52
Period size: 3 Copynumber: 59.0 Consensus size: 3
107213718 CTATTGCTGC
* * *
107213728 TAT TAT TAT TAT TCCT GAT T-T TAT TAT TAT TAAT GTAT TCTT TAT T-T
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT T-AT -TAT T-AT TAT TAT
* *** * *
107213775 TAT TAT TAC TAT TAT TAT TAT GGC TAT TAT TTT TAT GAT TA- TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
107213821 TCT TTT TGAG T-T TAT CTACT TAT TAT T-T TAT TAT TAAT TAACT TAG
1 TAT TAT T-AT TAT TAT -TA-T TAT TAT TAT TAT TAT T-AT T-A-T TAT
** * * * *
107213867 CGT TATT TAT TAT TAT TGT TAT TTT TAT CAT TAT TAC TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
107213910 CTTTTTAAAT
Statistics
Matches: 127, Mismatches: 36, Indels: 32
0.65 0.18 0.16
Matches are distributed among these distances:
2 11 0.09
3 91 0.72
4 21 0.17
5 4 0.03
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:107213774 original size:26 final size:24
Alignment explanation
Indices: 107213728--107213790 Score: 81
Period size: 26 Copynumber: 2.5 Consensus size: 24
107213718 CTATTGCTGC
107213728 TATTATTATTATTCCTGATTTTAT
1 TATTATTATTATTCCTGATTTTAT
* *
107213752 TATTATTAATGTATTCTTTATTTTAT
1 TATTATT-AT-TATTCCTGATTTTAT
*
107213778 TATTACTATTATT
1 TATTATTATTATT
107213791 ATTATGGCTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 11 0.32
25 4 0.12
26 19 0.56
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.63
Consensus pattern (24 bp):
TATTATTATTATTCCTGATTTTAT
Found at i:107215487 original size:17 final size:17
Alignment explanation
Indices: 107215465--107215498 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
107215455 TATCATATTT
107215465 TTATAATTGTATTGGTA
1 TTATAATTGTATTGGTA
107215482 TTATAATTGTATTGGTA
1 TTATAATTGTATTGGTA
107215499 AATACTATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (17 bp):
TTATAATTGTATTGGTA
Found at i:107215815 original size:20 final size:20
Alignment explanation
Indices: 107215770--107215818 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
107215760 AATACATTTG
*
107215770 GCATTGACACATCGTTGACTA
1 GCATTGAC-CATCATTGACTA
* *
107215791 -TATTGACCATTATTGACTA
1 GCATTGACCATCATTGACTA
107215810 GCATTGACC
1 GCATTGACC
107215819 GTTTAATTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (20 bp):
GCATTGACCATCATTGACTA
Found at i:107217589 original size:21 final size:20
Alignment explanation
Indices: 107217565--107217613 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
107217555 TCAAATACTT
107217565 TTTTATTTTATAAAAATAAAA
1 TTTTATTTT-TAAAAATAAAA
* *
107217586 TTTTATATTTAAAATTAAAA
1 TTTTATTTTTAAAAATAAAA
107217606 TTTCTATT
1 TTT-TATT
107217614 CAGAATTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTTATTTTTAAAAATAAAA
Found at i:107218738 original size:12 final size:11
Alignment explanation
Indices: 107218718--107218749 Score: 55
Period size: 12 Copynumber: 2.8 Consensus size: 11
107218708 TTGTATAACA
107218718 ATTATTTTATT
1 ATTATTTTATT
107218729 ATTAATTTTATT
1 ATT-ATTTTATT
107218741 ATTATTTTA
1 ATTATTTTA
107218750 GAACAAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:107224095 original size:23 final size:23
Alignment explanation
Indices: 107224052--107224095 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
107224042 GTTGACAATA
* *
107224052 TAATAATTTTATATGTAATTTTT
1 TAATAATATTATATATAATTTTT
107224075 TAATAATATTAT-TATAGATTT
1 TAATAATATTATATATA-ATTT
107224096 CAAGTCAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (23 bp):
TAATAATATTATATATAATTTTT
Found at i:107224229 original size:15 final size:17
Alignment explanation
Indices: 107224190--107224229 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
107224180 AATTATAACT
107224190 TAAAATTATTTTATATAA
1 TAAAA-TATTTTATATAA
107224208 T-AAATATTTT-TA-AA
1 TAAAATATTTTATATAA
107224222 TAAAATAT
1 TAAAATAT
107224230 ATAAAATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 3 0.14
15 8 0.38
16 6 0.29
17 3 0.14
18 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAAAATATTTTATATAA
Found at i:107224516 original size:16 final size:16
Alignment explanation
Indices: 107224491--107224523 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
107224481 CGAGTTACTC
*
107224491 AAAAAGTTAAAAATTA
1 AAAAAATTAAAAATTA
107224507 AAAAAATTAAAAATTA
1 AAAAAATTAAAAATTA
107224523 A
1 A
107224524 GTCGTTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (16 bp):
AAAAAATTAAAAATTA
Found at i:107225062 original size:21 final size:21
Alignment explanation
Indices: 107225038--107225078 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
107225028 TAAAAAAAAT
107225038 ACTA-TCATATTATTATTTTTA
1 ACTATTCATA-TATTATTTTTA
107225059 ACTATTCATATATTATTTTT
1 ACTATTCATATATTATTTTT
107225079 GTTTTAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (21 bp):
ACTATTCATATATTATTTTTA
Found at i:107225882 original size:31 final size:31
Alignment explanation
Indices: 107225844--107225914 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
107225834 ATTTCTTTAA
* *
107225844 ATGTATATAGTTGAATCACAATCAAAATTTT
1 ATGTATATAGTTGAACCACAATCAAAATTTC
** *
107225875 ATGTATATAGTTGAACCATGATCAAAGTTTC
1 ATGTATATAGTTGAACCACAATCAAAATTTC
107225906 ATGTATATA
1 ATGTATATA
107225915 ATTACGCCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (31 bp):
ATGTATATAGTTGAACCACAATCAAAATTTC
Found at i:107229221 original size:58 final size:58
Alignment explanation
Indices: 107229126--107229244 Score: 220
Period size: 58 Copynumber: 2.1 Consensus size: 58
107229116 TTTAAACAAG
*
107229126 CCTCGATTTTGATAGGTTGCTTAAACTAATTGAGATAAGGTTAAGGATAATTTTTGAC
1 CCTCAATTTTGATAGGTTGCTTAAACTAATTGAGATAAGGTTAAGGATAATTTTTGAC
*
107229184 CCTCAATTTTGATAGGTTGCTTGAACTAATTGAGATAAGGTTAAGGATAATTTTTGAC
1 CCTCAATTTTGATAGGTTGCTTAAACTAATTGAGATAAGGTTAAGGATAATTTTTGAC
107229242 CCT
1 CCT
107229245 TTTAGTATAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (58 bp):
CCTCAATTTTGATAGGTTGCTTAAACTAATTGAGATAAGGTTAAGGATAATTTTTGAC
Found at i:107231142 original size:3 final size:3
Alignment explanation
Indices: 107230966--107231122 Score: 90
Period size: 3 Copynumber: 52.7 Consensus size: 3
107230956 TAATGAAAAC
* * * * * *
107230966 AAT AAT ATT AAT AAT ATT GAT AAT AAA AAT AGT GAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
107231014 AAT AAT -AT AAT ACCT -AT GAT ACT AAT AAT AGT AAT AAT AAG AA-
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
107231057 AATT AAT ATT AGT ATT AAT AAT AAT GGAA- AAT AAT AAT AAC AAT GAT
1 AA-T AAT AAT AAT AAT AAT AAT AAT --AAT AAT AAT AAT AAT AAT AAT
*
107231104 AAT -AT AGT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
107231123 AAGTGAAATT
Statistics
Matches: 115, Mismatches: 30, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
2 9 0.08
3 101 0.88
4 3 0.03
5 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:107231482 original size:17 final size:16
Alignment explanation
Indices: 107231447--107231499 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
107231437 ATGCATAACA
107231447 ATAAAA-ATATAATAT
1 ATAAAATATATAATAT
107231462 -TAAAATATATATATAT
1 ATAAAATATATA-ATAT
*
107231478 ATAAAATGTATACATAGT
1 ATAAAATATATA-ATA-T
107231496 ATAA
1 ATAA
107231500 TGTTAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 5 0.16
15 5 0.16
16 4 0.12
17 13 0.41
18 5 0.16
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (16 bp):
ATAAAATATATAATAT
Found at i:107231837 original size:3 final size:3
Alignment explanation
Indices: 107231819--107231867 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
107231809 AAATATACAT
* * * *
107231819 TAA TAT TAA CAA TAA TAA TAA TAA TAG TAA TAC TAA TAA TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
107231866 TA
1 TA
107231868 CAAAAACAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:107232130 original size:28 final size:28
Alignment explanation
Indices: 107232050--107232136 Score: 76
Period size: 28 Copynumber: 3.1 Consensus size: 28
107232040 GGAAAGTAAT
* *
107232050 AATAATAATATAAT-TGATACTAA-AAAG
1 AATAATAATA-AATATGATAATAATAGAG
107232077 AA-AATATATAAATAT-AT-ATAGGATAGAG
1 AATAATA-ATAAATATGATAATA--ATAGAG
*
107232105 AATAATAATAAATATGATAATAATAGAT
1 AATAATAATAAATATGATAATAATAGAG
107232133 AATA
1 AATA
107232137 GCAAAAATAT
Statistics
Matches: 49, Mismatches: 3, Indels: 15
0.73 0.04 0.22
Matches are distributed among these distances:
25 2 0.04
26 9 0.18
27 7 0.14
28 22 0.45
29 6 0.12
30 3 0.06
ACGTcount: A:0.60, C:0.01, G:0.09, T:0.30
Consensus pattern (28 bp):
AATAATAATAAATATGATAATAATAGAG
Found at i:107239247 original size:20 final size:19
Alignment explanation
Indices: 107239224--107239261 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
107239214 TTATAAATTT
*
107239224 ATAAAAGAAATAATAAAAAA
1 ATAAAAAAAATAA-AAAAAA
107239244 ATAAAAAAAATAAAAAAA
1 ATAAAAAAAATAAAAAAA
107239262 TTTACCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (19 bp):
ATAAAAAAAATAAAAAAAA
Found at i:107240247 original size:40 final size:40
Alignment explanation
Indices: 107240203--107240389 Score: 302
Period size: 40 Copynumber: 4.7 Consensus size: 40
107240193 CCAACCCAAT
* * ** *
107240203 TGCCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
107240243 TGCCTTCGGGACTTAACCCGGAAATAGCAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
107240283 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
107240323 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
107240363 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
107240390 TCCTCAATTG
Statistics
Matches: 138, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.18
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
Found at i:107243347 original size:23 final size:26
Alignment explanation
Indices: 107243300--107243350 Score: 72
Period size: 23 Copynumber: 2.1 Consensus size: 26
107243290 ACGTACATAC
107243300 TTTTAATATCATTATTATGTATATAT
1 TTTTAATATCATTATTATGTATATAT
*
107243326 TTTTAATAT-A-TA-TATGTGTATAT
1 TTTTAATATCATTATTATGTATATAT
107243349 TT
1 TT
107243351 ATGTAGTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 12 0.50
24 2 0.08
25 1 0.04
26 9 0.38
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (26 bp):
TTTTAATATCATTATTATGTATATAT
Found at i:107243788 original size:20 final size:22
Alignment explanation
Indices: 107243710--107243789 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 22
107243700 TATGTTTTAT
* * *
107243710 TATGTATGTATTTTAATACTATT
1 TATGTATATATTTTAATATTA-C
107243733 TCATGTATATACTTTTAATATTAC
1 T-ATGTATATA-TTTTAATATTAC
*
107243757 TATGTATTTATTTTAATA-TA-
1 TATGTATATATTTTAATATTAC
*
107243777 TATGTACATATTT
1 TATGTATATATTT
107243790 ATGTAGTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
20 11 0.22
21 2 0.04
22 8 0.16
23 9 0.18
24 9 0.18
25 10 0.20
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.55
Consensus pattern (22 bp):
TATGTATATATTTTAATATTAC
Found at i:107246294 original size:11 final size:11
Alignment explanation
Indices: 107246261--107246303 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
107246251 AAATCATTTT
107246261 GAAGAGAGAAA
1 GAAGAGAGAAA
* * *
107246272 GAAAAAAAAAA
1 GAAGAGAGAAA
*
107246283 GAAGGGAGAAA
1 GAAGAGAGAAA
107246294 GAAGAGAGAA
1 GAAGAGAGAA
107246304 GGGAGGGGGA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:107246792 original size:18 final size:18
Alignment explanation
Indices: 107246769--107246826 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
107246759 GGTTTTTTTA
107246769 GTTTTTTTTTTGGGTTAG
1 GTTTTTTTTTTGGGTTAG
*
107246787 GTTTTTCTTTT---TT--
1 GTTTTTTTTTTGGGTTAG
*
107246800 CTTCTTTTTTTTGGGTTAG
1 GTT-TTTTTTTTGGGTTAG
107246819 GTTTTTTT
1 GTTTTTTT
107246827 GGGGGGGGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 12
0.65 0.09 0.26
Matches are distributed among these distances:
13 2 0.07
14 7 0.23
15 2 0.07
17 2 0.07
18 15 0.50
19 2 0.07
ACGTcount: A:0.03, C:0.05, G:0.19, T:0.72
Consensus pattern (18 bp):
GTTTTTTTTTTGGGTTAG
Found at i:107246824 original size:27 final size:27
Alignment explanation
Indices: 107246757--107246826 Score: 77
Period size: 32 Copynumber: 2.4 Consensus size: 27
107246747 GTTAGGTGGC
*
107246757 TAGGTTTTTTTAGTTTTTTTTTTGGGT
1 TAGGTTTTTTTACTTTTTTTTTTGGGT
*
107246784 TAGGTTTTTCTTTTTTCTTCTTTTTTTTGGGT
1 TAGG---TT-TTTTTACTT-TTTTTTTTGGGT
107246816 TAGGTTTTTTT
1 TAGGTTTTTTT
107246827 GGGGGGGGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
27 4 0.11
28 5 0.14
29 2 0.06
30 2 0.06
31 7 0.19
32 16 0.44
ACGTcount: A:0.06, C:0.04, G:0.19, T:0.71
Consensus pattern (27 bp):
TAGGTTTTTTTACTTTTTTTTTTGGGT
Found at i:107247813 original size:72 final size:73
Alignment explanation
Indices: 107247580--107247997 Score: 516
Period size: 74 Copynumber: 5.6 Consensus size: 73
107247570 AGTGTGTGAT
* *
107247580 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAAAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAAA-ACAGAAATTGAAAATA
*
107247645 CCTCAGCATGTGAAC
62 CCTCAGC--GTG-TC
* *
107247660 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAAAACAGAAATTGAAAATAC
*
107247724 CTCAACGTGTC
63 CTCAGCGTGTC
* ** * *
107247735 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTC
107247799 AGCGTGTC
66 AGCGTGTC
* *
107247807 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
107247872 TCAGCATGTC
64 TCAGCGTGTC
* ** * *
107247882 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
107247947 CAGCGTGTC
65 CAGCGTGTC
*
107247956 CTGAGGCTCAACTCACCTATCGCAATATGAGTTGAATTTTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTT
107247998 TTTGAAAAAT
Statistics
Matches: 299, Mismatches: 34, Indels: 16
0.86 0.10 0.05
Matches are distributed among these distances:
72 64 0.21
74 69 0.23
75 68 0.23
76 33 0.11
78 20 0.07
79 44 0.15
80 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (73 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTC
AGCGTGTC
Found at i:107247964 original size:74 final size:74
Alignment explanation
Indices: 107247580--107247998 Score: 547
Period size: 75 Copynumber: 5.6 Consensus size: 74
107247570 AGTGTGTGAT
* *
107247580 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAAAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAA-ACAGAAATTGAAAATA
*
107247645 CCTCAGCATGTGAAC
63 CCTCAGC--GTG-TC
* *
107247660 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAACAGAAATTGAAAATAC
*
107247724 CTCAACGTGTC
64 CTCAGCGTGTC
* ** * *
107247735 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
107247798 CAGCGTGTC
66 CAGCGTGTC
* *
107247807 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACC
*
107247872 TCAGCATGTC
65 TCAGCGTGTC
* ** * *
107247882 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
107247947 CAGCGTGTC
66 CAGCGTGTC
*
107247956 CTGAGGCTCAACTCACCTATCGCAATATGAGTTGAATTTTTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTT
107247999 TTGAAAAATA
Statistics
Matches: 300, Mismatches: 34, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
72 64 0.21
74 63 0.21
75 75 0.25
76 33 0.11
78 20 0.07
79 44 0.15
80 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (74 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
CAGCGTGTC
Found at i:107248112 original size:73 final size:73
Alignment explanation
Indices: 107248013--107248165 Score: 211
Period size: 73 Copynumber: 2.1 Consensus size: 73
107248003 AAAATATAAA
*
107248013 TTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCC-TGAAGCTCAACTCACCTCTCGCAATATG
107248077 AGTTGATTT
65 AGTTGATTT
* ** * *
107248086 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCATTTCTTGTAATATG
1 TTGA-AAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAAGCTCAACTCACCTCTCGCAATATG
107248150 AGTTGATTT
65 AGTTGATTT
*
107248159 TCGAAAA
1 TTGAAAA
107248166 ATAGATTGAA
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
72 3 0.04
73 63 0.89
74 5 0.07
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (73 bp):
TTGAAAAGCAGAAATTGAAATTACCTCAACGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:107248155 original size:165 final size:160
Alignment explanation
Indices: 107247847--107249985 Score: 833
Period size: 158 Copynumber: 13.5 Consensus size: 160
107247837 GTTGATTTTT
* * **
107247847 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAAAAATTG-AAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
107247912 GTTGATTTTTTTGAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTAT
64 GTTGA--TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
107247976 CGCAATATGAGTTGAATTTTTTTTTGAAAAATATAAA
127 CGCAATATGAGTTG-A-TTTTTTTTG-AAAATATAAA
* *
107248013 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAAAAATTGAAA-TACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
* ** *
107248078 GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCATTTCTTG
64 GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
* * *
107248143 TAATATGAGTTGA---TTTTCGAAAA-ATAGA
129 CAATATGAGTTGATTTTTTTTGAAAATATAAA
** *
107248171 TTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCCCTCGCAATATGA
1 TTGAAA-ACAAAAATTGA-AATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
107248236 GTTGATTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
64 GTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
* *
107248301 CAATATAAGTTGATTTTTTTTGAAAATAGAAA
129 CAATATGAGTTGATTTTTTTTGAAAATATAAA
* * **
107248333 TTG---------A---AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TTGAAAACAAAAATTGAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
107248386 TGAATTTTTTAGA-AAACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCT
66 TG-A-TTTTT-GACAAACAGAAATTGAAATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCT
* *
107248449 CTCGCAATATGAGTTGA---TCTTTG---A-AT--C
125 CTCGCAATATGAGTTGATTTTTTTTGAAAATATAAA
* ** ** * ** *
107248476 TTGAAAAGCAGATTTTGAAAATACCTCGATATGTGACTCAAGGCTCAACTCACCTTTCGCAATAT
1 TTGAAAA-CAAAAATTG-AAATACCTC-A-GCGTGCCTTGAGGCTCAACTCACCTCTCGCAATAT
* * * * * * *
107248541 GAGTTGATTTTTGAAAAATATAAATTGAAGTAAAAAAAAAATACCTCAGTGTGTGATCTGAAGCT
62 GAGTTGATTTTTGACAAACAGAAATT---G-------AAATTACCTCAGCGTGT--CCTGAGGCT
107248606 CAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTG-------AAA
115 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAATATAAA
* * * *
107248644 --G---ACAGAAATTGAAAATAGCTCAGCGCGTGAGC-TAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAACAAAAATTG-AAATACCTCA--GCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATAT
** * * * *
107248703 GAGTCAATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCT
62 GAGTTGA--TTTTTG--A--C----------AAACAGAAATTGAAATTACCTCAGCGTGT--CCT
107248768 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTG-------AAA
109 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAATATAAA
* * *
107248811 --G---ACAGAAATTGAAAATAGCTCAGCGCGTGAGCC--AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAACAAAAATTG-AAATACCTCA--GCGT--GCCTTGAGGCTCAACTCACCTCTCGCAATA
* * * *
107248869 TGAGTCGATTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGAC
61 TGAGTTGA---TTTTTG--A--C----------AAACAGAAATTGAAATTACCTCAGCGTGT--C
* * * * * *
107248934 CTGAGGCTCAACTCGCCGCTCGCAATA-CAGTTGA--TTTTTT-ACAACAGAAA
107 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAATATAAA
*
107248984 TTG-------AAA-T----TACCTCAGCGTTCCGTTGAGGCTCAACTCACCTCTCGC-A-ATGAT
1 TTGAAAACAAAAATTGAAATACCTCAGCGTGCC-TTGAGGCTCAACTCACCTCTCGCAATATGA-
* *
107249035 GTT--TTTTTGAAAGGCAGAA-ATTGAAAACGAATTGAAAATACCTC-GCGTGACCTGAGGCTCA
64 GTTGATTTTTG--A--CA-AACA--G---A--AATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
* * * * *
107249096 ACTCGCCGCTCGCAATACT-AGTTGA-TTTTTTTGACAACAGAAA
117 ACTCACCTCTCGCAATA-TGAGTTGATTTTTTTTGAAAATATAAA
* *
107249139 TTG-------AAA-T----TACCTCAACGTG-TTCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAATACCTCAGCGTGCCT-TGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * **
107249191 TTGATTTTTTGA-AAGACAAAAATTGAAAATACCTCAGCATGTCTTGA-GCTCAACTCATTTCTC
65 TTGA-TTTTTGACAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* * * *
107249254 GCAATATGAGTT-AATTTTTTTGACAACAGAAA
128 GCAATATGAGTTGATTTTTTTTGAAAATATAAA
** *
107249286 TTG-------AAA-T----TACCTCAGCGTGTCC-TGAGGCTCAACTCATTTCTCGTAATATGAG
1 TTGAAAACAAAAATTGAAATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
107249338 TTGATTTTTGAAAAATAGATTGAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCA
65 TTGA-TTTT------T-GA---CAA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCA
107249402 ACTCACCTCTCGCAATATGAGTTGA---TTTTTG---------A
117 ACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAATATAAA
* **
107249434 ---AAAACAGAAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAACAAAAATTG-AAATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
107249495 GTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
64 GTTGATTTTTG----AC----A---AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
**
107249560 CTCATTTCTCGCAATATGAGTTGA-TTTTTTTG-----A-AAA
118 CTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAATATAAA
* ** *
107249596 --G----CAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTG-AAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
107249655 TTGATTTTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
65 TTGA---TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* ** *
107249720 AGCAATATGAGTTGATTTTTTTTGAAAGGCAAAAA
127 CGCAATATGAGTTGATTTTTTTTGAAA-ATATAAA
* * *
107249755 TTGAAAAACGAAAATTGAAAATACCTCGGCGTGTGACC-TGAGGCTCAACTCGCCTCTCGCAATA
1 TTG-AAAACAAAAATTG-AAATACCTCAGC--GTG-CCTTGAGGCTCAACTCACCTCTCGCAATA
* * *
107249819 CGAGTTGATTTTTTTGAC-AACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
61 TGAGTTGA--TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
*
107249883 TCTCGCAATATGAGTTGA-TTTTTTTG-AAACAT--A
124 TCTCGCAATATGAGTTGATTTTTTTTGAAAATATAAA
* *
107249916 -CG-----AAAAATTGACAATACCTCAGCGTGTCC-CGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAAAAATTGA-AATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
107249974 ATTGAATTTTGA
64 GTTGATTTTTGA
107249986 AATAAAACAT
Statistics
Matches: 1638, Mismatches: 159, Indels: 368
0.76 0.07 0.17
Matches are distributed among these distances:
143 3 0.00
145 1 0.00
146 3 0.00
147 109 0.07
148 53 0.03
149 10 0.01
150 34 0.02
151 61 0.04
152 112 0.07
153 15 0.01
154 55 0.03
155 47 0.03
156 9 0.01
157 86 0.05
158 228 0.14
159 133 0.08
160 8 0.00
161 14 0.01
162 66 0.04
163 11 0.01
164 37 0.02
165 79 0.05
166 139 0.08
167 133 0.08
168 168 0.10
169 7 0.00
170 1 0.00
171 3 0.00
173 3 0.00
175 2 0.00
178 8 0.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (160 bp):
TTGAAAACAAAAATTGAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTGAAAATATAAA
Found at i:107248362 original size:75 final size:74
Alignment explanation
Indices: 107248171--107248735 Score: 458
Period size: 77 Copynumber: 7.3 Consensus size: 74
107248161 GAAAAATAGA
* * * ** *
107248171 TTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCCCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
107248236 GTTGA--TTT
65 GTTGATTTTT
* * *
107248244 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAA
1 TTG-AAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
107248309 GTTGATTTTTT
65 GTTGA-TTTTT
* * **
107248320 TTGAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
107248385 TTGAATTTTT
66 TTG-ATTTTT
* * * **
107248395 TAGAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAACAGAAATTGAAAATACCTCA--GCGTG-TCTTGAGGCTCAACTCACCTCTCGCAATAT
107248459 GAGTTGATCTTTGAAT
63 GAGTTGAT-TTT---T
** ** * ** *
107248475 CTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGACTCAAGGCTCAACTCACCTTTCGCAATA
1 -TTGAAAA-CAGAAATTGAAAATACCTC-A-GCGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
107248540 TGAGTTGA--TTT
62 TGAGTTGATTTTT
* * * * *
107248551 TTGAAAAATATAAATTGAAGTAAAAAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCT
1 TTG-AAAACAGAAATT---G-------AAAATACCTCAGCGTGT-CT-TGAGGCTCAACTCACCT
107248616 CTCGCAATATGAGTTGATTTTT
53 CTCGCAATATGAGTTGATTTTT
* * *
107248638 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGC-TAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCA--GCGTG-TCTTGAGGCTCAACTCACCTCTCGCAATA
**
107248702 TGAGTCAATTTTT
62 TGAGTTGATTTTT
*
107248715 TTGAAAGGCAGAAATTGAAAA
1 TTGAAA-ACAGAAATTGAAAA
107248736 ACGGAAATTG
Statistics
Matches: 405, Mismatches: 52, Indels: 66
0.77 0.10 0.13
Matches are distributed among these distances:
73 61 0.15
74 3 0.01
75 94 0.23
76 14 0.03
77 101 0.25
78 2 0.00
79 6 0.01
80 1 0.00
81 7 0.02
82 52 0.13
83 5 0.01
84 3 0.01
85 40 0.10
86 3 0.01
87 13 0.03
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (74 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:107248457 original size:77 final size:76
Alignment explanation
Indices: 107248171--107249761 Score: 614
Period size: 73 Copynumber: 20.3 Consensus size: 76
107248161 GAAAAATAGA
* * * * * *
107248171 TTGAAACACAAAAATTGACAATACCTCA-GCGTG-CCCCGAGGCTCAACTCACCCCTCGCAATAT
1 TTGAAA-ACAGAAATTGAAAATACCTCAGGCGTGATCTCAAGGCTCAACTCACCTCTCGCAATAT
107248234 GAGTTGA--TTT
65 GAGTTGATTTTT
* *
107248244 TTGAAAAACAAAAATTGAAAATACCTCA-GCGTG-TC-CTGAGGCTCAACTCACCTCTCGCAATA
1 TTG-AAAACAGAAATTGAAAATACCTCAGGCGTGATCTC-AAGGCTCAACTCACCTCTCGCAATA
*
107248306 TAAGTTGATTTTTT
64 TGAGTTGA-TTTTT
* * ** **
107248320 TTGAAAATAGAAATTGAAAATACCTCA-ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTGAAAACAGAAATTGAAAATACCTCAGGCGTGATCTCAAGGCTCAACTCACCTCTCGCAATATG
107248383 AGTTGAATTTTT
66 AGTTG-ATTTTT
* * *
107248395 TAGAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAACAGAAATTGAAAATACCTCAG-GCGTGATCTCAAGGCTCAACTCACCTCTCGCAATAT
107248459 GAGTTGATCTTTGAAT
65 GAGTTGAT-TTT---T
** *** *
107248475 CTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTCAAGGCTCAACTCACCTTTCGCAAT
1 -TTGAAAA-CAGAAATTGAAAATACCTC-AGGCGTGATCTCAAGGCTCAACTCACCTCTCGCAAT
107248539 ATGAGTTGA--TTT
63 ATGAGTTGATTTTT
* * * *
107248551 TTGAAAAATATAAATTGAAGTAAAAAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACC
1 TTG-AAAACAGAAATT---G-------AAAATACCTCAG-GCGTGATCTCAAGGCTCAACTCACC
107248615 TCTCGCAATATGAGTTGATTTTT
54 TCTCGCAATATGAGTTGATTTTT
* *
107248638 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCT-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAG-GCGTGATCTCAAGGCTCAACTCACCTCTCGCAATA
**
107248702 TGAGTCAATTTTT
64 TGAGTTGATTTTT
* *** *** ** * * * * *
107248715 TTGAAAGGCAGAAATTGAAAA-ACGGAAATTGAAAATACCTC--GGCGTGTGATCTGAGGCTCAA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGGCG-TGAT--CTCAAGGC---TCAACTCA-CCTC-T
* * * *
107248777 CTCACCTCTCGCAATATGAGTTGATTT
57 CGCA-ATAT-G-AGT-TGA-TT--TTT
* *
107248804 TTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAAT
1 T-TGAAA-ACAGAAATTGAAAATACCTCAG-GCGTGATCTCAAGGCTCAACTCACCTCTCGCAAT
*
107248868 ATGAGTCGATTTTTT
63 ATGAGTTGA-TTTTT
* *** *** ** * * * *
107248883 TTGAAAGGCAGAAATTGAAAA-ACGGAAATTGAAAATACCTC--GGCGTGTGACCTGAGGCTCAA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGGCG-TGAT--CTCAAGGC---TCAACTCA--C-C-T
** * * **
107248945 CTCGCCGCT-CGCAATACAGTTGATTT
55 CTCG-CAATATG-AGTTGA-TT--TTT
* * * **
107248971 TTTACAACAGAAATTGAAATTACCTCA-GCGT--TCCGTTGAGGCTCAACTCACCTCTCGC-A-A
1 TTGAAAACAGAAATTGAAAATACCTCAGGCGTGAT-C-TCAAGGCTCAACTCACCTCTCGCAATA
107249031 TGA--TG-TTTTT
64 TGAGTTGATTTTT
* * * *
107249041 TTGAAAGGCAGAAATTGAAAACGAATTGAAAATACCTC--GCGTGACCT-GAGGCTCAACTCGCC
1 TTG-AA---A-ACA--G---A--AATTGAAAATACCTCAGGCGTGATCTCAAGGCTCAACTCACC
*
107249103 GCTCGCAATACT-AGTTGATTTTT
54 TCTCGCAATA-TGAGTTGATTTTT
* * * * *
107249126 TTGACAACAGAAATTGAAATTACCTCA-ACGTGTTCT-GAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAACAGAAATTGAAAATACCTCAGGCGTGATCTCAAGGCTCAACTCACCTCTCGCAATATG
107249189 AGTTGA-TTTT
66 AGTTGATTTTT
* * ** **
107249199 TTGAAAGACAAAAATTGAAAATACCTCA-GCATG-TCTTGA-GCTCAACTCATTTCTCGCAATAT
1 TTGAAA-ACAGAAATTGAAAATACCTCAGGCGTGATCTCAAGGCTCAACTCACCTCTCGCAATAT
*
107249261 GAGTTAATTTTT
65 GAGTTGATTTTT
* * * ** *
107249273 TTGACAACAGAAATTGAAATTACCTCA-GCGTG-TC-CTGAGGCTCAACTCATTTCTCGTAATAT
1 TTGAAAACAGAAATTGAAAATACCTCAGGCGTGATCTC-AAGGCTCAACTCACCTCTCGCAATAT
107249335 GAGTTGATTTTT
65 GAGTTGATTTTT
*** * *** * *** * * *
107249347 GAAAAATAGATTGAAACACAAAAATTGACAATACCTCAGCGTG-CCCCGAGGCTCAACTCACCTC
1 TTGAAA-ACA--GAAA-TTGAAAA-T-AC-CT--CAGG-CGTGATCTCAAGGCTCAACTCACCTC
107249411 TCGCAATATGAGTTGA--TTT
56 TCGCAATATGAGTTGATTTTT
* **
107249430 TTGAAAAACAGAAATTGAAAATACCTCA-GCGTG-TC-CTGAGGCTCAACTCATTTCTCGCAATA
1 TTG-AAAACAGAAATTGAAAATACCTCAGGCGTGATCTC-AAGGCTCAACTCACCTCTCGCAATA
107249492 TGAGTTGATTTTT
64 TGAGTTGATTTTT
* * * ** **
107249505 GAAAAACATAAATTGAACAGAAATTGAAAATACCTCA-ACGTG-TCTTGAGGCTCAACTCATTTC
1 -------TTGAA---AACAGAAATTGAAAATACCTCAGGCGTGATCTCAAGGCTCAACTCACCTC
107249568 TCGCAATATGAGTTGATTTTT
56 TCGCAATATGAGTTGATTTTT
** **
107249589 TTGAAAAGCAGAAATTGAAAATACCTCA-ATGTG-TCTTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAA-CAGAAATTGAAAATACCTCAGGCGTGATCTCAAGGCTCAACTCACCTCTCGCAATAT
107249652 GAGTTGATTTTTT
65 GAGTTGA-TTTTT
* * *
107249665 TTGACAAACAGAAATTGAAATTACCTCA-GCGTG-TC-CTGAGGCTCAACTCACCTCTAGCAATA
1 TTGA-AAACAGAAATTGAAAATACCTCAGGCGTGATCTC-AAGGCTCAACTCACCTCTCGCAATA
107249727 TGAGTTGATTTTTT
64 TGAGTTGA-TTTTT
* *
107249741 TTGAAAGGCAAAAATTGAAAA
1 TTGAAA-ACAGAAATTGAAAA
107249762 ACGAAAATTG
Statistics
Matches: 1178, Mismatches: 205, Indels: 267
0.71 0.12 0.16
Matches are distributed among these distances:
70 5 0.00
71 1 0.00
72 4 0.00
73 177 0.15
74 109 0.09
75 164 0.14
76 107 0.09
77 126 0.11
78 33 0.03
79 13 0.01
80 36 0.03
81 34 0.03
82 76 0.06
83 19 0.02
84 80 0.07
85 97 0.08
86 22 0.02
87 33 0.03
88 11 0.01
89 5 0.00
90 22 0.02
91 3 0.00
92 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (76 bp):
TTGAAAACAGAAATTGAAAATACCTCAGGCGTGATCTCAAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTT
Found at i:107248793 original size:91 final size:90
Alignment explanation
Indices: 107248638--107248825 Score: 277
Period size: 91 Copynumber: 2.1 Consensus size: 90
107248628 GTTGATTTTT
* *
107248638 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCGCAATAT
*
107248703 GAGTCAATTTTTTTGAAAGGCAGAAA
66 GAGTCAA-TTTTTTGAAAGACAGAAA
* * * * *
107248729 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCGCAATAT
**
107248794 GAGTTGATTTTTTGAAAGACAGAAA
66 GAGTCAATTTTTTGAAAGACAGAAA
107248819 TTGAAAA
1 TTGAAAA
107248826 TAGCTCAGCG
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
90 24 0.28
91 63 0.72
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (90 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCGCAATAT
GAGTCAATTTTTTGAAAGACAGAAA
Found at i:107248855 original size:76 final size:77
Alignment explanation
Indices: 107248729--107249761 Score: 255
Period size: 76 Copynumber: 13.3 Consensus size: 77
107248719 AAGGCAGAAA
* * * * * **
107248729 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
107248794 GAGTTGA-TTTT
66 GAGTCGATTTTT
*
107248805 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
107248870 GAGTCGATTTTTT
66 GAGTCGA-TTTTT
* *** **** ** * * * *
107248883 TTGAAAGGCAGAAATTGAAAA-ACGGAAATTGAAAAT-A-CCTCGGCGTGTGACCTGAGGCTCAA
1 TTGAAAGACAGAAATTGAAAATAC-CTCA--GCGCGTGAGCCAAGGC---TCAACTCA--C-C-T
** * *
107248945 CTCGCCGCT-CGCAATAC-AGTTGATTT
56 CTCG-CAATATG-AGT-CGA-TT--TTT
* * * * ** ***
107248971 TTTACA-ACAGAAATTGAAATTACCTCAGCG-TTCCGTTGAGGCTCAACTCACCTCTCGC-A-AT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
107249032 GA-T-G-TTTTT
66 GAGTCGATTTTT
* ** ** * * *
107249041 TTGAAAGGCAGAAATTGAAAACGAATTGAAAATACCTCGCGTGA-CCTGAGGCTCAACTCGCCGC
1 TTGAAAGACAGAAATTG--AA--AA-T--ACCT-CAGCGCGTGAGCC-AAGGCTCAACTCACCTC
*
107249105 TCGCAATACT-AGTTGATTTTT
57 TCGCAATA-TGAGTCGATTTTT
* * * ** **
107249126 TTGACA-ACAGAAATTGAAATTACCTCA--ACGTGTTCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
*
107249188 GAGTTGA-TTTT
66 GAGTCGATTTTT
* * * ** **
107249199 TTGAAAGACAAAAATTGAAAATACCTCA--GCAT--GTCTTGAGCTCAACTCATTTCTCGCAATA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAG-GCTCAACTCACCTCTCGCAATA
**
107249260 TGAGTTAATTTTT
65 TGAGTCGATTTTT
* * * * ** *
107249273 TTGACA-ACAGAAATTGAAATTACCTCA--GCGTG-TCCTGAGGCTCAACTCATTTCTCGTAATA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
*
107249334 TGAGTTGATTTTT
65 TGAGTCGATTTTT
*** ** *** * ** ** *
107249347 GAAAAATAGATTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCT
1 -TTGAA-AGACAGAAA-TTGAAAA-T-AC-CT-CAGC-GCGTGAGCCAAGGCTCAACTCACCTCT
*
107249412 CGCAATATGAGTTGA--TTT
58 CGCAATATGAGTCGATTTTT
* * * **
107249430 TTGAAAAACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCATTTCTCGCAATA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
*
107249492 TGAGTTGATTTTT
65 TGAGTCGATTTTT
* * * ** **
107249505 GAAAAACAT-AAATTGAACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCATT
1 -------TTGAAA--G-ACAGAAATTGAAAATACCTCAGCGCGTGAGC-CAAGGCTCAACTCACC
*
107249566 TCTCGCAATATGAGTTGATTTTT
55 TCTCGCAATATGAGTCGATTTTT
** * **
107249589 TTGAAA-AGCAGAAATTGAAAATACCTCA--ATGTG-TCTTGAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAGA-CAGAAATTGAAAATACCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAAT
*
107249650 ATGAGTTGATTTTTT
64 ATGAGTCGA-TTTTT
* * * *
107249665 TTGACAA-ACAGAAATTGAAATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTAGCAAT
1 TTGA-AAGACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAAT
*
107249726 ATGAGTTGATTTTTT
64 ATGAGTCGA-TTTTT
* *
107249741 TTGAAAGGCAAAAATTGAAAA
1 TTGAAAGACAGAAATTGAAAA
107249762 ACGAAAATTG
Statistics
Matches: 734, Mismatches: 145, Indels: 156
0.71 0.14 0.15
Matches are distributed among these distances:
70 7 0.01
71 9 0.01
72 5 0.01
73 97 0.13
74 98 0.13
75 69 0.09
76 154 0.21
77 14 0.02
78 41 0.06
79 11 0.01
80 30 0.04
81 17 0.02
82 8 0.01
83 11 0.01
84 77 0.10
85 51 0.07
86 12 0.02
87 14 0.02
88 9 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (77 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTCGATTTTT
Found at i:107248973 original size:92 final size:92
Alignment explanation
Indices: 107248805--107248973 Score: 225
Period size: 92 Copynumber: 1.8 Consensus size: 92
107248795 AGTTGATTTT
* * *
107248805 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATAT
*
107248870 GAGTCGATTTTTTTTGAAAGGCAGAAA
66 CAGTCGATTTTTTTTGAAAGGCAGAAA
* * * * *
107248897 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCGCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCGCTCGCAATA
*
107248961 -CAGTTGATTTTTT
65 TCAGTCGATTTTTT
107248974 ACAACAGAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
91 13 0.20
92 53 0.80
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (92 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATAT
CAGTCGATTTTTTTTGAAAGGCAGAAA
Found at i:107249256 original size:73 final size:74
Alignment explanation
Indices: 107249055--107249761 Score: 621
Period size: 74 Copynumber: 9.3 Consensus size: 74
107249045 AAGGCAGAAA
* ** *
107249055 TTGAAAAC-G-AATTGAAAATACCTC-GCGTGACCTGAGGCTCAACTCGCCGCTCGCAATACT-A
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATA-TGA
107249116 GTTGATTTTT
65 GTTGATTTTT
* * * * *
107249126 TTGACAACAGAAATTGAAATTACCTCAACGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAG
107249191 TTGA-TTTT
66 TTGATTTTT
* * * *
107249199 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGA-GCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGA
*
107249263 GTTAATTTTT
65 GTTGATTTTT
* * * *
107249273 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAG
107249338 TTGA--TTT
66 TTGATTTTT
* * * ** * * * * * *
107249345 TTGAAAA-ATAGATTGAAACACAAAAAT-TGACAAT-ACCTCAGCGTGCCCCGAGGCTCAACTCA
1 TTGAAAACAGAAATTG-AA-A-ATACCTCAG-C-GTGTCCT--GAG-G-CTC-A-ACTC-A-T--
107249407 CCTCTCGCAATATGAGTTGA--TTT
51 -CTCTCGCAATATGAGTTGATTTTT
*
107249430 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGA
107249495 GTTGATTTTT
65 GTTGATTTTT
* * * * *
107249505 GAAAAACATAAATTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
1 -------TTGAA---AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTC
107249570 GCAATATGAGTTGATTTTT
56 GCAATATGAGTTGATTTTT
** * *
107249589 TTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGA
107249654 GTTGATTTTTT
65 GTTGA-TTTTT
* * *
107249665 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGA
107249730 GTTGATTTTTT
65 GTTGA-TTTTT
* *
107249741 TTGAAAGGCAAAAATTGAAAA
1 TTGAAA-ACAGAAATTGAAAA
107249762 ACGAAAATTG
Statistics
Matches: 525, Mismatches: 68, Indels: 81
0.78 0.10 0.12
Matches are distributed among these distances:
71 13 0.02
72 12 0.02
73 99 0.19
74 106 0.20
75 65 0.12
76 90 0.17
77 8 0.02
78 5 0.01
79 2 0.00
80 5 0.01
81 4 0.01
82 4 0.01
83 1 0.00
84 74 0.14
85 25 0.05
86 6 0.01
87 6 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (74 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTTTT
Found at i:107249401 original size:232 final size:223
Alignment explanation
Indices: 107247585--107249983 Score: 1860
Period size: 244 Copynumber: 10.2 Consensus size: 223
107247575 GTGATCTGAA
*
107247585 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAAAAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAA-ACAGAAATTGAAAATACCTCA
* ** * *
107247650 GCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAA
63 GC--GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTATTGAAAACAGAAA
* * * * ** *
107247714 TTGAAAATATCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAA
125 TTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
* **
107247778 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
190 AACAGAAATTGAAAATACCTCAGCGTGTCTTGAG
*
107247812 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCAGC
* * *
107247877 ATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTT-TTGACAACAGAAATTGAA
65 GTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTATTGAAAACAGAAATTGAA
* * *
107247940 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAATTTTTTTTTGAAA
130 AATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-------TT----
* * *
107248005 AATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAG
183 --T-T---TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCTTGAG
*
107248053 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAGAAATTGAAATTACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTGAAAATACCTCAGC
* * * *
107248116 GTGTCCTGAAGCTCAACTCATTTCTTGTAATATGAGTTGATTTTCGAAAAATAGATTGAAACACA
65 GTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT-------T-TATTGAAA-ACA
* * * * *
107248181 AAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCCCTCGCAATATGAGTTGA-TTTT
121 GAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
107248245 TGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAG
186 TG-AAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAG
* * *
107248284 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAATAGAAATTGAAAATACCTCAAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAACAGAAATTGAAAATACCTCAGC
*
107248349 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTTTA--GAAAACAGAAATTGA
65 GTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTTTATTGAAAACAGAAATTGA
* *
107248412 AAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTTTGAATC
129 AAATACCTCA--GCGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT---T-
** ** * **
107248476 TTGAAAAGCAGATTTTGAAAATACCTCGATATGTGACTCAAG
185 TTGAAAA-CAGAAATTGAAAATACCTC-A-GCGTGTCTTGAG
* * *
107248518 GCTCAACTCACCTTTCGCAATATGAGTTGA--TTTTTGAAAAATATAAATTGAAGTAAAAAAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATT---G-------AAA
* * * **
107248581 ATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT-TTGAAA
55 ATACCTCAGCGTGT--CCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTATTGAAA
* * *
107248644 GACAGAAATTGAAAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCGCAATATGAGTCA
118 -ACAGAAATTGAAAATACCTCA--GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT--
** * * *
107248709 ATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAG
178 -TGATTTT------------TTG-AAAACAGAAATTGAAAATACCTCAGCGTGT-CT-TGAG
*
107248771 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGACAGAAATTGAAAATAGCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA--
* * ** *
107248835 GCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTGAAAGGCAGAAATT
63 GCGTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTT-----------ATT
* * * * *
107248899 GAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATA-CA
114 G-AAAACAGAAATTGAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
107248963 GTTGATTTTTT-ACAACAGAAATTGAAATTACCTCAGCGT-TCCGTTGAG
176 GTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGT-C-TTGAG
*
107249011 GCTCAACTCACCTCTCGC-A-ATGA--TG-TTTTTTTGAAAGGCAGAAATTGAAAACGAATTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AA---A-ACA--G---A--AATTGAA
* **** *
107249071 AATACCTC-GCGTGACCTGAGGCTCAACTCGCCGCTCGCAATACT-AGTTGA-TTTTT-TTGACA
54 AATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATA-TGAGTTGATTTTTTATTGAAA
* * **
107249132 ACAGAAATTGAAATTACCTCAACGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
118 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
107249197 TTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGA-
183 TTTTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTCTTGAG
** * * *
107249238 GCTCAACTCATTTCTCGCAATATGAGTTAATTTTTTTGACAACAGAAATTGAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCG
* *
107249303 TGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTGAAAAATAGATTGAAACACAA
66 TGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT------T--ATTGAAA-ACAG
* * *
107249368 AAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
122 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
107249432 GAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAG
187 G-AAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAG
** * *
107249470 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-------TTGAA---AACAGAAATTGAAAA
* *
107249535 TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTT-TTGAAAAGC
56 TACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTATTGAAAA-C
** * *
107249598 AGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
120 AGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
* *
107249663 TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
183 TTTTGA-AAACAGAAATTGAAAATACCTCAGCGTGTCTTGAG
* *
107249705 GCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTGAAAGGCAAAAATTGAAAAACGAAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT-----G-----A---AAACA-G-AAAT
* *** *
107249770 TGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTTTT-T
50 TGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTAT
* * *
107249833 TGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
113 TGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * **
107249898 TGATTTTTTTGAAACATACGAAAAATTGACAATACCTCAGCGTGTCCCGAG
178 TGA-TTTTTTG-AA-A-AC-AGAAATTGAAAATACCTCAGCGTGTCTTGAG
* *
107249949 GCTCAACTCACCTCTCGCAATATGAATTGAATTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
107249984 GAAATAAAAC
Statistics
Matches: 1789, Mismatches: 199, Indels: 352
0.76 0.09 0.15
Matches are distributed among these distances:
220 15 0.01
221 94 0.05
222 12 0.01
223 50 0.03
224 4 0.00
225 72 0.04
226 31 0.02
227 61 0.03
228 32 0.02
229 31 0.02
230 1 0.00
231 113 0.06
232 196 0.11
233 58 0.03
234 48 0.03
235 70 0.04
236 15 0.01
237 3 0.00
238 4 0.00
239 70 0.04
240 40 0.02
241 123 0.07
242 143 0.08
243 58 0.03
244 216 0.12
245 6 0.00
246 4 0.00
247 21 0.01
249 6 0.00
250 55 0.03
251 4 0.00
252 1 0.00
253 53 0.03
254 17 0.01
255 5 0.00
257 2 0.00
258 3 0.00
259 49 0.03
260 3 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (223 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCG
TGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTATTGAAAACAGAAATTGAAA
ATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGA
AATTGAAAATACCTCAGCGTGTCTTGAG
Found at i:107249577 original size:84 final size:81
Alignment explanation
Indices: 107249436--107249983 Score: 483
Period size: 76 Copynumber: 6.9 Consensus size: 81
107249426 ATTTTTGAAA
**
107249436 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
107249501 TTTTGAAAAACATAAATTG
66 TTTT-AAAAACATAAA--G
* * **
107249520 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
***
107249585 TTTT---TTGA-AAAG
66 TTTTAAAAACATAAAG
** *
107249597 --CAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
****
107249660 TTTTTTTGAC----A-
66 TTTTAAAAACATAAAG
* *
107249671 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
** *
107249736 TTTTTTTGAAAGGCAAAAATTG
65 --TTTTT-AAAAACATAAA--G
* * * *
107249758 AAAAACGAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAG
1 -AACA-G-AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAG
** *
107249823 TTGATTTTT-------TTGAC
61 TTGATTTTTAAAAACATAAAG
*
107249837 AACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
** *
107249902 TTTTTTGAAACAT-ACG
65 TTTTTAAAAACATAAAG
* * * *
107249918 -A-A-AAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGAA
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
107249980 TTTT
66 TTTT
107249984 GAAATAAAAC
Statistics
Matches: 392, Mismatches: 43, Indels: 65
0.78 0.09 0.13
Matches are distributed among these distances:
74 34 0.09
75 70 0.18
76 78 0.20
77 6 0.02
78 58 0.15
79 9 0.02
80 4 0.01
81 1 0.00
82 1 0.00
84 68 0.17
88 3 0.01
89 6 0.02
90 21 0.05
92 33 0.08
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (81 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTAAAAACATAAAG
Found at i:107249863 original size:166 final size:165
Alignment explanation
Indices: 107249600--107249911 Score: 502
Period size: 166 Copynumber: 1.9 Consensus size: 165
107249590 TGAAAAGCAG
* * *
107249600 AAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAATGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTT
* *
107249665 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGA
66 TTGACAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGA
107249730 GTTGATTTTTTTTGAAAGGCAAAAATTGAAAAACGA
131 GTTGA-TTTTTTTGAAAGGCAAAAATTGAAAAACGA
** *
107249766 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTT
1 AAATTGAAAATACCTC--AATGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
*
107249830 TTTTGAC-AACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
64 TTTTGACAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATAT
107249894 GAGTTGATTTTTTTGAAA
129 GAGTTGATTTTTTTGAAA
107249912 CATACGAAAA
Statistics
Matches: 135, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
165 11 0.08
166 77 0.57
167 10 0.07
168 37 0.27
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (165 bp):
AAATTGAAAATACCTCAATGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTT
TTGACAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGA
GTTGATTTTTTTGAAAGGCAAAAATTGAAAAACGA
Found at i:107249953 original size:78 final size:74
Alignment explanation
Indices: 107249765--107249983 Score: 303
Period size: 78 Copynumber: 2.9 Consensus size: 74
107249755 TTGAAAAACG
* * *
107249765 AAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 AAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
107249830 TTTTGACAACA
64 TTTTGACAACA
* *
107249841 GAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
107249906 TTGAAACATACGA
66 TTG--ACA-AC-A
* * * *
107249919 AAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTTT
1 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
107249984 GAAATAAAAC
Statistics
Matches: 128, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
74 42 0.33
76 24 0.19
77 2 0.02
78 60 0.47
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (74 bp):
AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGACAACA
Found at i:107254115 original size:13 final size:14
Alignment explanation
Indices: 107254099--107254134 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
107254089 CAATCTCATA
107254099 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
107254112 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
107254125 TCTC-ATTTCA
1 TCTCAATTTCA
107254135 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:107254124 original size:18 final size:19
Alignment explanation
Indices: 107254086--107254126 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
107254076 TGGTTCATGT
107254086 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
107254105 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
107254123 TTTC
1 TTTC
107254127 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:107254370 original size:23 final size:23
Alignment explanation
Indices: 107254288--107254374 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
107254278 CCTGATCAGT
*
107254288 ATACGGCACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
* *
107254310 A-ACGACACATGAGGTGCCTG--
1 ATACGACACATAAAGTGCCTGAA
** * *
107254330 ATACGACACACGAGGTGCTTGAA
1 ATACGACACATAAAGTGCCTGAA
107254353 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
107254375 TCGGTAAAGC
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
20 1 0.02
21 32 0.62
22 1 0.02
23 18 0.35
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Done.