Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 339 of 352
Found at i:108650933 original size:9 final size:9
Alignment explanation
Indices: 108650919--108650970 Score: 61
Period size: 9 Copynumber: 5.7 Consensus size: 9
108650909 TATATAAAAA
108650919 TAATAATAT
1 TAATAATAT
*
108650928 TGATAATAT
1 TAATAATAT
108650937 TAATAATAT
1 TAATAATAT
*
108650946 TAGA-AATAA
1 TA-ATAATAT
108650955 TAATAATATT
1 TAATAATA-T
108650965 TAATAA
1 TAATAA
108650971 AGAAACAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
8 1 0.03
9 28 0.78
10 7 0.19
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (9 bp):
TAATAATAT
Found at i:108656909 original size:19 final size:19
Alignment explanation
Indices: 108656887--108656927 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
108656877 TTATTAATAA
108656887 TTTGAATTTTAAAAATTAT
1 TTTGAATTTTAAAAATTAT
**
108656906 TTTGAATTTTGGAAATTAT
1 TTTGAATTTTAAAAATTAT
108656925 TTT
1 TTT
108656928 TTATTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (19 bp):
TTTGAATTTTAAAAATTAT
Found at i:108658299 original size:19 final size:21
Alignment explanation
Indices: 108658245--108658305 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 21
108658235 ATGATTCCTA
108658245 AAATAATTTAAAAAATAAAACAACT
1 AAATAA-TTAAAAAAT--AA-AACT
108658270 AAATAATTAAAAAATAAAACT
1 AAATAATTAAAAAATAAAACT
108658291 AAA-AA-TAAAAAATAA
1 AAATAATTAAAAAATAA
108658306 TTTAAAAAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
19 10 0.28
20 2 0.06
21 7 0.19
22 2 0.06
24 9 0.25
25 6 0.17
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (21 bp):
AAATAATTAAAAAATAAAACT
Found at i:108661374 original size:15 final size:16
Alignment explanation
Indices: 108661354--108661385 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
108661344 TTAAAATATA
108661354 TAATAAAA-ATAAAAT
1 TAATAAAACATAAAAT
108661369 TAATAAAACATAAAAT
1 TAATAAAACATAAAAT
108661385 T
1 T
108661386 TTATCATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (16 bp):
TAATAAAACATAAAAT
Found at i:108662189 original size:15 final size:17
Alignment explanation
Indices: 108662158--108662190 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
108662148 CATTCGAATG
108662158 AAATAAGATGAAAGAAA
1 AAATAAGATGAAAGAAA
108662175 AAATAAGA-G-AAGAAA
1 AAATAAGATGAAAGAAA
108662190 A
1 A
108662191 TAAAATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.09
Consensus pattern (17 bp):
AAATAAGATGAAAGAAA
Found at i:108689848 original size:15 final size:15
Alignment explanation
Indices: 108689828--108689858 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
108689818 GTCATGTAAG
108689828 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
108689843 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
108689858 T
1 T
108689859 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:108690050 original size:17 final size:17
Alignment explanation
Indices: 108690017--108690055 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
108690007 TAAGCTTTTG
108690017 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
108690034 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
108690051 ATTTT
1 ATTTT
108690056 CCACAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:108690822 original size:15 final size:15
Alignment explanation
Indices: 108690798--108690827 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
108690788 TGGAGATCGA
*
108690798 GGAAATGGTCGTGGT
1 GGAAAAGGTCGTGGT
108690813 GGAAAAGGTCGTGGT
1 GGAAAAGGTCGTGGT
108690828 CAAGAAGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (15 bp):
GGAAAAGGTCGTGGT
Found at i:108694208 original size:15 final size:15
Alignment explanation
Indices: 108694188--108694218 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
108694178 GTCATGTAAG
108694188 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
108694203 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
108694218 T
1 T
108694219 ATATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:108694409 original size:17 final size:17
Alignment explanation
Indices: 108694376--108694414 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
108694366 TAAGCTTTTG
108694376 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
108694393 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
108694410 ATTTT
1 ATTTT
108694415 CCACATTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:108697132 original size:20 final size:20
Alignment explanation
Indices: 108697094--108697133 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
108697084 TCAATCATAT
* *
108697094 AAAAAATTTGAATTATATGA
1 AAAAAATTTAAATGATATGA
*
108697114 AAAAAATTTAAATGGTATGA
1 AAAAAATTTAAATGATATGA
108697134 GAAACTGTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (20 bp):
AAAAAATTTAAATGATATGA
Found at i:108703513 original size:12 final size:11
Alignment explanation
Indices: 108703477--108703518 Score: 52
Period size: 12 Copynumber: 3.9 Consensus size: 11
108703467 TTTTCTTCTA
108703477 TTTTAATAATT
1 TTTTAATAATT
*
108703488 TTAT-A-AATT
1 TTTTAATAATT
108703497 TTTTAATAATT
1 TTTTAATAATT
108703508 TATTTAATAAT
1 T-TTTAATAAT
108703519 CTTGCCTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 7 0.27
10 2 0.08
11 8 0.31
12 9 0.35
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAATAATT
Found at i:108721810 original size:5 final size:6
Alignment explanation
Indices: 108721796--108721835 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
108721786 AAATTATATG
*
108721796 TTTTAT TTTTAT TTTTAT TTTTAGAA TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTT--AT TTTTAT TTTTAT TT
108721836 ATTAAATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 25 0.83
8 5 0.17
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:108721876 original size:13 final size:13
Alignment explanation
Indices: 108721860--108721884 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
108721850 AATTTTTATG
108721860 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
108721873 ATTGGGTTGGGT
1 ATTGGGTTGGGT
108721885 TAGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:108721884 original size:18 final size:18
Alignment explanation
Indices: 108721861--108721898 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
108721851 ATTTTTATGA
*
108721861 TTGGGTTGGGTAATTGGG
1 TTGGGTTAGGTAATTGGG
*
108721879 TTGGGTTAGGTACTTGGG
1 TTGGGTTAGGTAATTGGG
108721897 TT
1 TT
108721899 AATATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.03, G:0.45, T:0.42
Consensus pattern (18 bp):
TTGGGTTAGGTAATTGGG
Found at i:108723242 original size:10 final size:10
Alignment explanation
Indices: 108723216--108723254 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
108723206 AACATATTAT
*
108723216 AAAATAGTAGC
1 AAAATAGTA-A
108723227 AAAATAGTAA
1 AAAATAGTAA
*
108723237 AAAATAATAA
1 AAAATAGTAA
108723247 AAAATAGT
1 AAAATAGT
108723255 TTTCTTTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.21
Consensus pattern (10 bp):
AAAATAGTAA
Found at i:108728382 original size:13 final size:13
Alignment explanation
Indices: 108728364--108728389 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
108728354 CTTAAAAACC
108728364 TTTTAATTTTAAA
1 TTTTAATTTTAAA
108728377 TTTTAATTTTAAA
1 TTTTAATTTTAAA
108728390 AAAGATCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTAATTTTAAA
Found at i:108740548 original size:6 final size:6
Alignment explanation
Indices: 108740537--108740561 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
108740527 TAGCAAAGAA
108740537 TTCACT TTCACT TTCACT TTCACT T
1 TTCACT TTCACT TTCACT TTCACT T
108740562 CTTTCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (6 bp):
TTCACT
Found at i:108745670 original size:25 final size:24
Alignment explanation
Indices: 108745642--108745715 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 24
108745632 CAAAATTAAC
108745642 TTAAATAATATATATTTAATTAATA
1 TTAAATAATATATATTTAA-TAATA
* * *
108745667 TTAAATATTATAATTTTTAATATTA
1 TTAAATAATAT-ATATTTAATAATA
108745692 TTAAAT-ATATATATTTAATAATA
1 TTAAATAATATATATTTAATAATA
108745715 T
1 T
108745716 AATAATTTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
23 12 0.29
24 3 0.07
25 20 0.48
26 7 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAAATAATATATATTTAATAATA
Found at i:108745740 original size:13 final size:13
Alignment explanation
Indices: 108745722--108745746 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
108745712 ATATAATAAT
108745722 TTATTAATTTAAA
1 TTATTAATTTAAA
108745735 TTATTAATTTAA
1 TTATTAATTTAA
108745747 TAAAGTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATTAATTTAAA
Found at i:108745740 original size:49 final size:50
Alignment explanation
Indices: 108745642--108745749 Score: 125
Period size: 49 Copynumber: 2.2 Consensus size: 50
108745632 CAAAATTAAC
* *
108745642 TTAAATAATATATATTTAATTAATATTAAATATTATAATTTTTAATATTA
1 TTAAATAATATATATTTAATTAATATAAAATATTATAATTTTAAATATTA
108745692 TTAAAT-ATATATATTTAA-TAATATAATAAT-TTATTAA-TTTAAATTATTAA
1 TTAAATAATATATATTTAATTAATATAA-AATATTA-TAATTTTAAA-TATT-A
*
108745742 TTTAATAA
1 TTAAATAA
108745750 AGTATTTAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
48 15 0.30
49 22 0.44
50 12 0.24
51 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (50 bp):
TTAAATAATATATATTTAATTAATATAAAATATTATAATTTTAAATATTA
Found at i:108745747 original size:29 final size:29
Alignment explanation
Indices: 108745710--108745779 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
108745700 ATATATTTAA
* *
108745710 TAATATAATAATTTA-TTAAT-TTAAATTAT
1 TAATTTAATAATGTATTTAATATT-AATT-T
*
108745739 TAATTTAATAAAGTATTTAATATTAATTT
1 TAATTTAATAATGTATTTAATATTAATTT
*
108745768 TATTTTAATAAT
1 TAATTTAATAAT
108745780 AAATTTTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
29 23 0.68
30 9 0.26
31 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (29 bp):
TAATTTAATAATGTATTTAATATTAATTT
Found at i:108745774 original size:17 final size:18
Alignment explanation
Indices: 108745754--108745787 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
108745744 TAATAAAGTA
*
108745754 TTTAAT-ATTAATTTTAT
1 TTTAATAATAAATTTTAT
108745771 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
108745788 AAAATAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:108746310 original size:2 final size:2
Alignment explanation
Indices: 108746303--108746339 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
108746293 ACATACTCTC
108746303 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
108746340 AAAGTTTATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:108750858 original size:22 final size:22
Alignment explanation
Indices: 108750824--108750887 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
108750814 TCAACATTTT
*
108750824 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
108750846 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
108750867 AATTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
108750888 CATTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:108750881 original size:15 final size:16
Alignment explanation
Indices: 108750861--108750892 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
108750851 ATATATAATA
108750861 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
108750876 ATATAAAAATTACATT
1 ATATAAAAATTACATT
108750892 A
1 A
108750893 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:108751078 original size:113 final size:113
Alignment explanation
Indices: 108750941--108751382 Score: 645
Period size: 113 Copynumber: 3.9 Consensus size: 113
108750931 TATAATTATA
* * *
108750941 TACTAACACAAAATAACTATAAAATTA-TTTTTTAAAATACATTACT-AAAAAATCACAATACAC
1 TACTAA-A-AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACAC
* *
108751004 TAATACACACTAAACCACTAAACAGTAACAA-CATATAACCTAATCTTAAAT
64 TAAT--ACACTAAACCACTAAACACTAACAATTATATAACCTAATCTTAAAT
108751055 TACTAAAAAAATAGCTATAAAAATATTTTTTTAAAATATATTACT--AAAAA--A-AAT-CAC-A
1 TACTAAAAAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTA
108751113 ATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAAT
66 ATACACTAAACCACTAAACACTAACAA-TTATATAACCTAATCTTAAAT
* *
108751162 TACTAATAAAATAGCTATAAAAATA-TTTTTTAAAATATATTACTAAAAAAATTACAATACACTA
1 TACTAAAAAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTA
108751226 ATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAAT
66 ATACACTAAACCACTAAACACTAACAA-TTATATAACCTAATCTTAAAT
* *
108751275 TACTAATAAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACAGTA
1 TACTAAAAAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTA
* *
108751340 ATGCACTAAACTACTAAACACTAACAATTTATATAACCTAATC
66 ATACACTAAACCACTAAACACTAACAA-TTATATAACCTAATC
108751383 AACTATAAAA
Statistics
Matches: 307, Mismatches: 10, Indels: 22
0.91 0.03 0.06
Matches are distributed among these distances:
105 24 0.08
106 19 0.06
107 46 0.15
108 8 0.03
109 3 0.01
110 2 0.01
111 3 0.01
112 24 0.08
113 94 0.31
114 84 0.27
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.30
Consensus pattern (113 bp):
TACTAAAAAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTA
ATACACTAAACCACTAAACACTAACAATTATATAACCTAATCTTAAAT
Found at i:108751267 original size:220 final size:222
Alignment explanation
Indices: 108750950--108751382 Score: 680
Period size: 220 Copynumber: 1.9 Consensus size: 222
108750940 ATACTAACAC
*
108750950 AAAATAACTATAAAATTATTTTTTAAAATACATTACTAAAAAATCACAATACACTAATACACACT
1 AAAATAACTATAAAAATATTTTTTAAAATACATTACTAAAAAATCACAATACACTAATA-ACACT
*
108751015 AAACCACTAAACAGTAACAACATATAACCTAATCTTAAATTACTAAAAAAATAGCTATAAAAATA
65 AAACCACTAAACACTAACAACATATAACCTAATCTTAAATTACTAAAAAAATAGCTATAAAAATA
108751080 TTTTTTTAAAATATATTACTAAAAAAAATCAC-A-A-T-A-CACTAAACCACTAAACACTAACAA
130 TTTTTTTAAAATATATTACT-AAAAAAATCACAACAGTAAGCACTAAACCACTAAACACTAACAA
108751140 TTTATATAACCTAATCTTAAATTACTAAT
194 TTTATATAACCTAATCTTAAATTACTAAT
* * *
108751169 AAAATAGCTATAAAAATATTTTTTAAAATATATTACTAAAAAAATTACAATACACTAAT-ACACT
1 AAAATAACTATAAAAATATTTTTTAAAATACATTACT-AAAAAATCACAATACACTAATAACACT
* *
108751233 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAA
65 AAACCACTAAACACTAACAA--CATATAACCTAATCTTAAATTACTAAAAAAATAGCTATAAAAA
*
108751298 TATTTTTTTAAAATATATTACTAAAAAAATCACAATACAGTAATGCACTAAACTACTAAACACTA
128 TATTTTTTTAAAATATATTACTAAAAAAATCAC-A-ACAGTAA-GCACTAAACCACTAAACACTA
108751363 ACAATTTATATAACCTAATC
190 ACAATTTATATAACCTAATC
108751383 AACTATAAAA
Statistics
Matches: 195, Mismatches: 8, Indels: 14
0.90 0.04 0.06
Matches are distributed among these distances:
218 24 0.12
219 45 0.23
220 83 0.43
222 1 0.01
223 1 0.01
224 1 0.01
225 1 0.01
227 39 0.20
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.30
Consensus pattern (222 bp):
AAAATAACTATAAAAATATTTTTTAAAATACATTACTAAAAAATCACAATACACTAATAACACTA
AACCACTAAACACTAACAACATATAACCTAATCTTAAATTACTAAAAAAATAGCTATAAAAATAT
TTTTTTAAAATATATTACTAAAAAAATCACAACAGTAAGCACTAAACCACTAAACACTAACAATT
TATATAACCTAATCTTAAATTACTAAT
Found at i:108751393 original size:220 final size:209
Alignment explanation
Indices: 108750892--108751454 Score: 675
Period size: 220 Copynumber: 2.6 Consensus size: 209
108750882 AAATTACATT
* * * ** * *
108750892 AAAAAATCACAAAACACTAAACTA-TAAACACTAAAAATTTATAATTATATACT-AAC-ACAAAA
1 AAAAAATCACAATACACTAAACTACTAAACACTAACAATTTAT-ATAACCTAATCAACTATAAAA
*
108750954 TAACTATAAAATTATTTTTTAAAATACATTACT-AAAAAATCACAATACACTAATACACACTAAA
65 T-ACTATAAAA-TATTTTTTAAAATATATTACTAAAAAAATCACAATACACTAAT--ACACTAAA
*
108751018 CCACTAAACAGTAACAACATATAACCTAATCTTAAATTACTAAAAAAATAGCTATAAAAATATTT
126 CCACTAAACACTAACAACATATAACCTAATCTTAAATTACTAAAAAAATAGCTATAAAAATATTT
108751083 TTTTAAAATATATTACTAA
191 TTTTAAAATATATTACTAA
*
108751102 AAAAAATCACAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTA
1 AAAAAATCACAATACACTAAACTACTAAACACTAACAATTTATATAACCTAATC----A--ACT-
*
108751167 ATAAAATAGCTATAAAAATATTTTTTAAAATATATTACTAAAAAAATTACAATACACTAATACAC
59 ATAAAATA-CTAT-AAAATATTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACAC
* *
108751232 TAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAA
122 TAAACCACTAAACACTAACAA--CATATAACCTAATCTTAAATTACTAAAAAAATAGCTATAAAA
108751297 ATATTTTTTTAAAATATATTACT-A
185 ATATTTTTTTAAAATATATTACTAA
108751321 AAAAAATCACAATACAGTAATGCACTAAACTACTAAACACTAACAATTTATATAACCTAATCAAC
1 AAAAAATCAC---A-A-T-A--CACTAAACTACTAAACACTAACAATTTATATAACCTAATCAAC
*
108751386 TATAAAAT--TAT----T-TTTTTTAAATATATTATTACTAAAAAAATCACAATATACTAATACA
58 TATAAAATACTATAAAATATTTTTTAAA-ATA-TATTACTAAAAAAATCACAATACACTAATACA
108751444 CTAAA-CACTAA
121 CTAAACCACTAA
108751455 CAATTTGTAA
Statistics
Matches: 312, Mismatches: 16, Indels: 48
0.83 0.04 0.13
Matches are distributed among these distances:
210 28 0.09
211 26 0.08
212 10 0.03
213 35 0.11
215 1 0.00
217 5 0.02
218 25 0.08
219 41 0.13
220 94 0.30
221 3 0.01
222 1 0.00
223 2 0.01
224 1 0.00
225 1 0.00
227 39 0.12
ACGTcount: A:0.53, C:0.15, G:0.01, T:0.31
Consensus pattern (209 bp):
AAAAAATCACAATACACTAAACTACTAAACACTAACAATTTATATAACCTAATCAACTATAAAAT
ACTATAAAATATTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAACCACT
AAACACTAACAACATATAACCTAATCTTAAATTACTAAAAAAATAGCTATAAAAATATTTTTTTA
AAATATATTACTAA
Found at i:108754492 original size:17 final size:17
Alignment explanation
Indices: 108754451--108754493 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
108754441 TTATAAACTC
108754451 CTTATTCTAAGTCTTTTT
1 CTTATT-TAAGTCTTTTT
108754469 CTT-TTTAAGTCTTTTT
1 CTTATTTAAGTCTTTTT
*
108754485 TTTATTTAA
1 CTTATTTAA
108754494 AAAATATGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 13 0.57
17 7 0.30
18 3 0.13
ACGTcount: A:0.19, C:0.12, G:0.05, T:0.65
Consensus pattern (17 bp):
CTTATTTAAGTCTTTTT
Found at i:108759103 original size:26 final size:27
Alignment explanation
Indices: 108759058--108759116 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
108759048 TGTTTTCCAT
108759058 ATAG-TCGATTTCCTTAAAAAAAGGGC
1 ATAGTTCGATTTCCTTAAAAAAAGGGC
108759084 ATAGTTCGATTTCCTTAAAAAAAGGGC
1 ATAGTTCGATTTCCTTAAAAAAAGGGC
108759111 ATAGTT
1 ATAGTT
108759117 TGACTTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (27 bp):
ATAGTTCGATTTCCTTAAAAAAAGGGC
Found at i:108765046 original size:9 final size:9
Alignment explanation
Indices: 108765032--108765092 Score: 61
Period size: 9 Copynumber: 6.4 Consensus size: 9
108765022 ATTATTTTAG
108765032 AAAATTTTT
1 AAAATTTTT
108765041 AAAA-TTTT
1 AAAATTTTT
108765049 AAAATTTTT
1 AAAATTTTT
108765058 AATATATATTTT
1 AA-A-AT-TTTT
*
108765070 AGAATTTTT
1 AAAATTTTT
*
108765079 ATAATTTTTT
1 A-AAATTTTT
108765089 AAAA
1 AAAA
108765093 ATATAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 8 0.19
9 17 0.40
10 10 0.23
11 3 0.07
12 5 0.12
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
AAAATTTTT
Found at i:108765069 original size:21 final size:19
Alignment explanation
Indices: 108765032--108765092 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 19
108765022 ATTATTTTAG
108765032 AAAATTTTTA-AA-ATTTT
1 AAAATTTTTATAATATTTT
108765049 AAAATTTTTAATATATATTTT
1 AAAATTTTT-ATA-ATATTTT
* *
108765070 AGAATTTTTATAATTTTTT
1 AAAATTTTTATAATATTTT
108765089 AAAA
1 AAAA
108765093 ATATAAAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
17 9 0.24
18 1 0.03
19 10 0.27
20 4 0.11
21 13 0.35
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
AAAATTTTTATAATATTTT
Found at i:108765152 original size:19 final size:20
Alignment explanation
Indices: 108765112--108765155 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
108765102 TTGAATTTTT
108765112 TTTTTGAAAATTATTTTGAA
1 TTTTTGAAAATTATTTTGAA
108765132 TTTTTGAAAATTATTTT-AA
1 TTTTTGAAAATTATTTTGAA
108765151 TTTTT
1 TTTTT
108765156 TTGTAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (20 bp):
TTTTTGAAAATTATTTTGAA
Found at i:108768669 original size:21 final size:21
Alignment explanation
Indices: 108768643--108768683 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
108768633 ATCTGCTCAA
* *
108768643 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
108768664 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
108768684 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:108771906 original size:25 final size:24
Alignment explanation
Indices: 108771873--108771922 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 24
108771863 AATTAATCCA
108771873 AATACAAATAGAAATAGGATTATTG
1 AATACAAATAGAAATAGGATT-TTG
*
108771898 AATATAAATAGAAATAGGATTTTG
1 AATACAAATAGAAATAGGATTTTG
108771922 A
1 A
108771923 TTAATCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.52, C:0.02, G:0.16, T:0.30
Consensus pattern (24 bp):
AATACAAATAGAAATAGGATTTTG
Found at i:108771933 original size:6 final size:6
Alignment explanation
Indices: 108771924--108771953 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
108771914 GGATTTTGAT
*
108771924 TAATCC TAATCC TAATCC TAATTC TAATCC
1 TAATCC TAATCC TAATCC TAATCC TAATCC
108771954 AACTCCATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (6 bp):
TAATCC
Found at i:108775222 original size:67 final size:68
Alignment explanation
Indices: 108775108--108775243 Score: 213
Period size: 67 Copynumber: 2.0 Consensus size: 68
108775098 TCAAATTAAA
* *
108775108 CCACATGCTCCACCACTTGTGCGGCCCCTTGTCAATTCCTTTAAGTTTCATTCTTGC-AGATGTA
1 CCACATGCTCCACCACTTGTGCAGCCCCTTGTCAATTCCTTTAAGTTTCATTCTTACGA-ATGTA
108775172 CTCC
65 CTCC
* *
108775176 CCACATGCTCCACTACTTGTGCAGCCCC-TGTCAATTCCTTTTAGTTTCATTCTTACGAATGTAC
1 CCACATGCTCCACCACTTGTGCAGCCCCTTGTCAATTCCTTTAAGTTTCATTCTTACGAATGTAC
108775240 TCC
66 TCC
108775243 C
1 C
108775244 TAGGTTGGAT
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
67 36 0.57
68 27 0.43
ACGTcount: A:0.18, C:0.34, G:0.13, T:0.35
Consensus pattern (68 bp):
CCACATGCTCCACCACTTGTGCAGCCCCTTGTCAATTCCTTTAAGTTTCATTCTTACGAATGTAC
TCC
Found at i:108775452 original size:4 final size:4
Alignment explanation
Indices: 108775443--108775467 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
108775433 TGAAGAGGTT
108775443 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
108775468 GATTCTAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:108778849 original size:44 final size:44
Alignment explanation
Indices: 108778786--108778874 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
108778776 ATTTTATGTC
*
108778786 ATGAAACACTACATAATTAAAAATACTACATAAGTATTGAAATT
1 ATGAAACACTACATAATTAAAAAGACTACATAAGTATTGAAATT
108778830 ATGAAACACTACATAATTAAAAAGACTACATAAGTATTGAAATT
1 ATGAAACACTACATAATTAAAAAGACTACATAAGTATTGAAATT
108778874 A
1 A
108778875 ACACATAATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.28
Consensus pattern (44 bp):
ATGAAACACTACATAATTAAAAAGACTACATAAGTATTGAAATT
Found at i:108780696 original size:21 final size:20
Alignment explanation
Indices: 108780668--108780706 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
108780658 TGTTGGGTTG
*
108780668 ATTGGTATGGAATTATGTGC
1 ATTGGTATGGAATGATGTGC
*
108780688 ATTGAGTATTGAATGATGT
1 ATTG-GTATGGAATGATGT
108780707 ACTTTGTGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.28, C:0.03, G:0.28, T:0.41
Consensus pattern (20 bp):
ATTGGTATGGAATGATGTGC
Found at i:108782254 original size:39 final size:39
Alignment explanation
Indices: 108782211--108782286 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
108782201 TATAGGTAAC
108782211 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT
1 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT
* * *
108782250 GAGTTTAACTGAGTTTCGAGTTTGGATCGAGGAACTG
1 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTG
108782287 TTTAGCAGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30
Consensus pattern (39 bp):
GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT
Found at i:108787468 original size:29 final size:29
Alignment explanation
Indices: 108787436--108787519 Score: 79
Period size: 28 Copynumber: 3.0 Consensus size: 29
108787426 TATTAAAACA
108787436 ATATATAATTTATTAAAAATTTAAAAATT
1 ATATATAATTTATTAAAAATTTAAAAATT
* *
108787465 ATAT-T-ATATATATAAAATATTT-AAATTT
1 ATATATAATTTAT-TAAAA-ATTTAAAAATT
*
108787493 ATATATAA-TTATCAAGAAA-TTAAAAAT
1 ATATATAATTTATTAA-AAATTTAAAAAT
108787520 AAAACTATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
27 7 0.16
28 22 0.50
29 14 0.32
30 1 0.02
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (29 bp):
ATATATAATTTATTAAAAATTTAAAAATT
Found at i:108787553 original size:56 final size:56
Alignment explanation
Indices: 108787426--108787553 Score: 136
Period size: 56 Copynumber: 2.3 Consensus size: 56
108787416 TTAATTTTTT
* * * * * *
108787426 TATTAAAACAATATATAATTTATTAAAAATTTAAAAATTATATTATATATATAAAA
1 TATTTAAATAATATATAATTTATCAAAAATTTAAAAATAAAACTATATATATAAAA
*
108787482 TATTTAAATTTATATATAA-TTATCAAGAAA-TTAAAAATAAAACTATATATATGAAAAA
1 TATTTAAA-TAATATATAATTTATCAA-AAATTTAAAAATAAAACTATATATAT--AAAA
108787540 TATTTAAA-AATATA
1 TATTTAAATAATATA
108787554 GATAAATCCA
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
56 37 0.62
57 11 0.18
58 12 0.20
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (56 bp):
TATTTAAATAATATATAATTTATCAAAAATTTAAAAATAAAACTATATATATAAAA
Found at i:108789359 original size:18 final size:18
Alignment explanation
Indices: 108789306--108789359 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
108789296 CGCTTAACCT
108789306 ATTTTTA-A-ATT-TATA
1 ATTTTTATATATTATATA
* * *
108789321 ATATTT-TATATTATGTT
1 ATTTTTATATATTATATA
108789338 ATTTTTATATATTATATA
1 ATTTTTATATATTATATA
108789356 ATTT
1 ATTT
108789360 ATAACACATT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
15 6 0.21
16 3 0.10
17 7 0.24
18 13 0.45
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
ATTTTTATATATTATATA
Found at i:108795390 original size:22 final size:21
Alignment explanation
Indices: 108795363--108795413 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 21
108795353 CAATTATATG
108795363 TTGCCACTTGACCATATTATAA
1 TTGCCACTTGACCATA-TATAA
108795385 TTGCCACTTGACCATATATAA
1 TTGCCACTTGACCATATATAA
*
108795406 GTG-CACTT
1 TTGCCACTT
108795414 ATGTATCATG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 16 0.57
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (21 bp):
TTGCCACTTGACCATATATAA
Found at i:108803431 original size:22 final size:21
Alignment explanation
Indices: 108803388--108803431 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
108803378 TTTGTTGTTG
* *
108803388 TTTTTTATTGTTTTGCTGCTA
1 TTTTTTATTGTTTTACTACTA
*
108803409 TTTTCTTATTGTTTTATTACTA
1 TTTT-TTATTGTTTTACTACTA
108803431 T
1 T
108803432 GTTGTTACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.14, C:0.09, G:0.09, T:0.68
Consensus pattern (21 bp):
TTTTTTATTGTTTTACTACTA
Found at i:108805047 original size:126 final size:126
Alignment explanation
Indices: 108804822--108805073 Score: 450
Period size: 126 Copynumber: 2.0 Consensus size: 126
108804812 ACTTTTACTA
108804822 AAAAATAGACAAATTAGTTAATGTACATTAGATTAAAAAGCAAATTGATCATTTCTATTAAAAAT
1 AAAAATAGACAAATTAGTTAATGTACATTAGATTAAAAAGCAAATTGATCATTTCTATTAAAAAT
*
108804887 TTCATCTATTTTTACAGTTAAAAACTAGCGTGGGTGACAAAATAACTAGACAACTACACGT
66 TTCATCCATTTTTACAGTTAAAAACTAGCGTGGGTGACAAAATAACTAGACAACTACACGT
* * *
108804948 AAAAATAGACAAATTAGTTAATGTATATTAGATTAAAAAGCAAATTGATTATTTCTATTTAAAAT
1 AAAAATAGACAAATTAGTTAATGTACATTAGATTAAAAAGCAAATTGATCATTTCTATTAAAAAT
* *
108805013 TTCATCCATTTTTACAGTTAAAAACTAGTGTGGGTGACGAAATAACTAGACAACTACACGT
66 TTCATCCATTTTTACAGTTAAAAACTAGCGTGGGTGACAAAATAACTAGACAACTACACGT
108805074 GTACCTCATG
Statistics
Matches: 120, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 120 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (126 bp):
AAAAATAGACAAATTAGTTAATGTACATTAGATTAAAAAGCAAATTGATCATTTCTATTAAAAAT
TTCATCCATTTTTACAGTTAAAAACTAGCGTGGGTGACAAAATAACTAGACAACTACACGT
Found at i:108814541 original size:42 final size:42
Alignment explanation
Indices: 108814492--108814578 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
108814482 ACCTGCACGA
*
108814492 TAAATAAATTATCACATGTGCATTGTTATATTAACTTGTTAT
1 TAAATAAATTATCACATGTGCATTGTCATATTAACTTGTTAT
*
108814534 TAAATAAATTATCACATGTGCATTGTCATATTTACTTGTTAT
1 TAAATAAATTATCACATGTGCATTGTCATATTAACTTGTTAT
108814576 TAA
1 TAA
108814579 TAGAAAAATC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.36, C:0.10, G:0.09, T:0.45
Consensus pattern (42 bp):
TAAATAAATTATCACATGTGCATTGTCATATTAACTTGTTAT
Found at i:108819217 original size:22 final size:22
Alignment explanation
Indices: 108819174--108819242 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
108819164 TATGCACTAT
* *
108819174 TAAACAAAGAGCACTAAA-GTGC
1 TAAACAGAGAACAC-AAATGTGC
*
108819196 TATACAGAGAACACAAATGTGC
1 TAAACAGAGAACACAAATGTGC
* *
108819218 TAAACAGAGAGCACTAATGTGC
1 TAAACAGAGAACACAAATGTGC
108819240 TAA
1 TAA
108819243 TAATCGGAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
21 3 0.08
22 37 0.93
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.17
Consensus pattern (22 bp):
TAAACAGAGAACACAAATGTGC
Found at i:108825122 original size:2 final size:2
Alignment explanation
Indices: 108825115--108825144 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
108825105 TATAATAGGG
*
108825115 GT GT GT GT GT GT GT GT GT GC GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
108825145 AACACTATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.03, G:0.50, T:0.47
Consensus pattern (2 bp):
GT
Found at i:108825971 original size:34 final size:34
Alignment explanation
Indices: 108825925--108826036 Score: 152
Period size: 34 Copynumber: 3.3 Consensus size: 34
108825915 CATAGGCCTC
* *
108825925 ACTGATATTGTTACTGAAATGGGCTCAGGCCCAG
1 ACTGATACTGTTACTGAAATGGGCTCAGGCCCAA
* *
108825959 ACTGATACTGTTACTAAAATAGGCTCAGGCCCAA
1 ACTGATACTGTTACTGAAATGGGCTCAGGCCCAA
* * *
108825993 ACTGCTACTGTTACTGAAATGGGCTAAGGCCCTA
1 ACTGATACTGTTACTGAAATGGGCTCAGGCCCAA
*
108826027 ACTGAAACTG
1 ACTGATACTG
108826037 AAAGGGCTTA
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 67 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (34 bp):
ACTGATACTGTTACTGAAATGGGCTCAGGCCCAA
Found at i:108828857 original size:30 final size:30
Alignment explanation
Indices: 108828805--108828863 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
108828795 TGTAATAGAT
108828805 TTTAAAAAAAATAATGATGTATACAAATAAA
1 TTTAAAAAAAATAATGATGTATA-AAATAAA
* *
108828836 TTTAAAAGAAATTAT-ATGTATAAAATAA
1 TTTAAAAAAAATAATGATGTATAAAATAA
108828864 CATGGATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 6 0.23
30 7 0.27
31 13 0.50
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (30 bp):
TTTAAAAAAAATAATGATGTATAAAATAAA
Found at i:108836460 original size:36 final size:37
Alignment explanation
Indices: 108836393--108836471 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 37
108836383 ATTTTACATA
* *
108836393 TAAAAATAATTATAATATTTAATTTAAAATTATTTGTT
1 TAAAAATAATTATAATATTTAAATTAAAATTATTAG-T
* *
108836431 TAAAAATAATTA-GA-ATTTAAATTACAATTATTAGT
1 TAAAAATAATTATAATATTTAAATTAAAATTATTAGT
108836466 TAAAAA
1 TAAAAA
108836472 GAGTTGTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 7 0.19
36 17 0.46
37 1 0.03
38 12 0.32
ACGTcount: A:0.52, C:0.01, G:0.04, T:0.43
Consensus pattern (37 bp):
TAAAAATAATTATAATATTTAAATTAAAATTATTAGT
Found at i:108838165 original size:25 final size:23
Alignment explanation
Indices: 108838136--108838200 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
108838126 AATAAAAAAC
*
108838136 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAAT-AAATACA
108838161 TTTAAAACATAAAAATAAAT--A
1 TTTAAAACATAAAAATAAATACA
108838182 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAATAAATA
108838201 AATAATGGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
19 10 0.26
20 8 0.21
21 1 0.03
23 4 0.11
24 4 0.11
25 11 0.29
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (23 bp):
TTTAAAACATAAAAATAAATACA
Found at i:108838193 original size:19 final size:20
Alignment explanation
Indices: 108838162--108838200 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
108838152 TCAAATACAT
108838162 TTAAAACATAAAAATAAATA
1 TTAAAACATAAAAATAAATA
108838182 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAATAAATA
108838201 AATAATGGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (20 bp):
TTAAAACATAAAAATAAATA
Found at i:108838682 original size:13 final size:13
Alignment explanation
Indices: 108838661--108838690 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
108838651 GACCATACAT
*
108838661 AAAAGGAGAGGAA
1 AAAAAGAGAGGAA
108838674 AAAAAGAGAGGAA
1 AAAAAGAGAGGAA
108838687 AAAA
1 AAAA
108838691 CACCCTAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (13 bp):
AAAAAGAGAGGAA
Found at i:108844985 original size:181 final size:181
Alignment explanation
Indices: 108844677--108845038 Score: 652
Period size: 181 Copynumber: 2.0 Consensus size: 181
108844667 CCAACTAATC
*
108844677 GGGTTCAGAAAACAGACATCTCACCCACAACAGTCACGAATTACACATTAACAGAACACATAGCC
1 GGGTTCAAAAAACAGACATCTCACCCACAACAGTCACGAATTACACATTAACAGAACACATAGCC
* * *
108844742 ATATATATAGAGACTTAGTTACCCTCACTAAATTCTAGCCAAGGGTCGGAATACAAAGACGCATT
66 ATAGATATAGAGACTTAGCTACCCTCACTAAAGTCTAGCCAAGGGTCGGAATACAAAGACGCATT
108844807 TTCAGATAAAAAACATACACAAACTAAAAGTGGTGACTTAGGACCAAACAG
131 TTCAGATAAAAAACATACACAAACTAAAAGTGGTGACTTAGGACCAAACAG
*
108844858 GGGTTCAAAAAACAGACATCTCACCCTCAACAGTCACGAATTACACATTAACAGAACACATAGCC
1 GGGTTCAAAAAACAGACATCTCACCCACAACAGTCACGAATTACACATTAACAGAACACATAGCC
* *
108844923 ATAGATATAGAGAGTTAGCTACCCTCACTAAAGTCTAGCCAAGGGTCGGAATACACAGACGCATT
66 ATAGATATAGAGACTTAGCTACCCTCACTAAAGTCTAGCCAAGGGTCGGAATACAAAGACGCATT
*
108844988 TTCAGATAAAAAACATACACAAACTAAAATTGGTGACTTAGGACCAAACAG
131 TTCAGATAAAAAACATACACAAACTAAAAGTGGTGACTTAGGACCAAACAG
108845039 CTGAATAGAA
Statistics
Matches: 173, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
181 173 1.00
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.20
Consensus pattern (181 bp):
GGGTTCAAAAAACAGACATCTCACCCACAACAGTCACGAATTACACATTAACAGAACACATAGCC
ATAGATATAGAGACTTAGCTACCCTCACTAAAGTCTAGCCAAGGGTCGGAATACAAAGACGCATT
TTCAGATAAAAAACATACACAAACTAAAAGTGGTGACTTAGGACCAAACAG
Found at i:108845822 original size:19 final size:18
Alignment explanation
Indices: 108845800--108845841 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
108845790 ATTTTCAAAG
108845800 GAAAAAGAAAAGAAACAG-A
1 GAAAAAG-AAAGAAA-AGAA
108845819 GAAAAAGAAAGAAAAGAA
1 GAAAAAGAAAGAAAAGAA
108845837 GAAAA
1 GAAAA
108845842 GGGAACTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 2 0.09
18 13 0.59
19 7 0.32
ACGTcount: A:0.76, C:0.02, G:0.21, T:0.00
Consensus pattern (18 bp):
GAAAAAGAAAGAAAAGAA
Found at i:108846822 original size:300 final size:296
Alignment explanation
Indices: 108846148--108847123 Score: 1051
Period size: 300 Copynumber: 3.3 Consensus size: 296
108846138 GGGGTGTTAC
* * * *
108846148 ATTAAATTTACCACTCAACCAAAGCCTTATTTTAATATATTTTATACTTTTGTATTTTAATAGGC
1 ATTAAATTTACCACTCAACCAAAACTTTATTTTAATATATTTTATACATTT-TATTTTAATATGC
* * * * * * *
108846213 ACGAGTTGTTCTCTTCATTAGTTG--TA-TA-ACTATACTATTTATTAAGTATTTTGCTAAGTTG
65 ACAAGTTATTATCTCCACTAGTTGTATATTATACT-TACTATTTATTAAGTGTTTTACTAAGTTG
* * * * * *
108846274 GTGTCACCCTCAACTAGGTCACCAACTCGGTTAGGAAATTATAAAAATGTCCTTTCGTAATTAAA
129 GTGTCACCCTCATCGA-GTCACCAACTCGGTTAAGAAATTACAAAAAT-ACCTTTTGTAATTAAA
*
108846339 ATAAGTTATACTGTTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAAAAATTAAAATATGCAT
192 ATAAGTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAAAAATTAAAATATGCAT
* * *
108846404 AT-GT-GAGATTTGAA-CTCACACAAATTGGA-TTAAAAAAC
257 ATAGTGGA-ATTTGAACCT-ACACAAATTGAATTTGAAAAAT
* * *
108846442 CTTAAATTTATCACTCAACCAAAA-TTTCATTTTAATATATTTTATACATTTTTATTTTAAAATG
1 ATTAAATTTACCACTCAACCAAAACTTT-ATTTTAATATATTTTATACA-TTTTATTTTAATATG
* * * *
108846506 CACAAATTACTATCTCCACTAGTTGTATATTTATACTTACTATTTATTAAGTGTTTTATTATGTT
64 CACAAGTTATTATCTCCACTAGTTGTATA-TTATACTTACTATTTATTAAGTGTTTTACTAAGTT
* ** *
108846571 GGTGTCACCCTCGATCGAGTCACCAAATCAATTAAGAAATTACAAAAATACATTTTGTAATTAAA
128 GGTGTCACCCTC-ATCGAGTCACCAACTCGGTTAAGAAATTACAAAAATACCTTTTGTAATTAAA
*
108846636 ATAACTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAATAAATTAAAATATGCA
192 ATAAGTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAA-AAATTAAAATATGCA
* * * * *
108846701 CATAGTGGAATTTGAACCTACCCCAATTAAATTTGTAAAAT
256 TATAGTGGAATTTGAACCTACACAAATTGAATTTGAAAAAT
* * *
108846742 ATTAAATTTACCACTTAACCAAAACTTTGTTTTAATATATTTTATACAATTTTATTTTAATTTGC
1 ATTAAATTTACCACTCAACCAAAACTTTATTTTAATATATTTTATAC-ATTTTATTTTAATATGC
* * * *
108846807 ACAAGTTATTATCTCC-CATAGTTGTATATCTATAGTTAATA-TTATTAAGCGTTTTACTAAATT
65 ACAAGTTATTATCTCCAC-TAGTTGTATAT-TATACTTACTATTTATTAAGTGTTTTACTAAGTT
* ** * * * *
108846870 GCTGTCACATTCAATTGGGTCACCAACTCGGTTAAAAAATTACAAAAATACCTTTTCATAATTAA
128 GGTGTCACCCTC-ATCGAGTCACCAACTCGGTTAAGAAATTACAAAAATACCTTTT-GTAATTAA
* * * *
108846935 AATAAGTTATACTATTTAAGAGTATTTTAGTATTTTCTTTTTAACAAAAACAAATTAAAATATGC
191 AATAAGTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAA-AAATTAAAATATGC
* * * * *
108847000 ATATAGTAGG-ATTTGAACCCACACTAATTGAGTTAGCAAAACT
255 ATATAGT-GGAATTTGAACCTACACAAATTGAATTTG-AAAAAT
* * * * * * *
108847043 -TTAATTTTACCAATCAACCAAAGCTTCATTTTATTCTAATTTATACATTTTCATTTTTAATATG
1 ATTAAATTTACCACTCAACCAAAACTTTATTTTAATATATTTTATACATTTT-A-TTTTAATATG
*
108847107 CATAAGTTATTATCTCC
64 CACAAGTTATTATCTCC
108847124 GTTACTTTTA
Statistics
Matches: 570, Mismatches: 90, Indels: 37
0.82 0.13 0.05
Matches are distributed among these distances:
293 2 0.00
294 68 0.12
295 3 0.01
296 2 0.00
297 60 0.11
298 81 0.14
299 93 0.16
300 226 0.40
301 35 0.06
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.40
Consensus pattern (296 bp):
ATTAAATTTACCACTCAACCAAAACTTTATTTTAATATATTTTATACATTTTATTTTAATATGCA
CAAGTTATTATCTCCACTAGTTGTATATTATACTTACTATTTATTAAGTGTTTTACTAAGTTGGT
GTCACCCTCATCGAGTCACCAACTCGGTTAAGAAATTACAAAAATACCTTTTGTAATTAAAATAA
GTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAAAAATTAAAATATGCATATAG
TGGAATTTGAACCTACACAAATTGAATTTGAAAAAT
Found at i:108856522 original size:30 final size:30
Alignment explanation
Indices: 108856488--108856551 Score: 85
Period size: 32 Copynumber: 2.1 Consensus size: 30
108856478 ACCATTGAAC
108856488 CTAAATCTCGAAATTT-AAAAAATACAAAGA
1 CTAAATCTC-AAATTTAAAAAAATACAAAGA
*
108856518 CTAAATTTCAAATTTGAAAAAAAATACAAAGA
1 CTAAATCTCAAATTT--AAAAAAATACAAAGA
108856550 CT
1 CT
108856552 TATCTCATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 6 0.20
30 8 0.27
32 16 0.53
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.25
Consensus pattern (30 bp):
CTAAATCTCAAATTTAAAAAAATACAAAGA
Found at i:108858057 original size:8 final size:8
Alignment explanation
Indices: 108858044--108858068 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
108858034 TATAAAAATT
108858044 TGTCAAGC
1 TGTCAAGC
108858052 TGTCAAGC
1 TGTCAAGC
108858060 TGTCAAGC
1 TGTCAAGC
108858068 T
1 T
108858069 TAAAACTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (8 bp):
TGTCAAGC
Found at i:108859975 original size:12 final size:12
Alignment explanation
Indices: 108859951--108859992 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
108859941 AGAAACATTC
*
108859951 GAAAAAG-GGAA
1 GAAAAAGAGAAA
108859962 GAAAAAGAGAAA
1 GAAAAAGAGAAA
*
108859974 GAAAAAGAAAAA
1 GAAAAAGAGAAA
108859986 GGAAAAA
1 -GAAAAA
108859993 CTAGAGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 7 0.26
12 14 0.52
13 6 0.22
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
GAAAAAGAGAAA
Found at i:108860737 original size:40 final size:39
Alignment explanation
Indices: 108860690--108860769 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
108860680 AATTATGGGA
* * *
108860690 TACTGAATATTGTTTTGAATACTGAATTGAACTGTGAAAT
1 TACTGAATAATG-TTAGAATACTGAATTGAACTGTAAAAT
* * *
108860730 TACTGAATAATGTTAGTATATTGCATTGAACTGTAAAAT
1 TACTGAATAATGTTAGAATACTGAATTGAACTGTAAAAT
108860769 T
1 T
108860770 TCTAATGAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 23 0.68
40 11 0.32
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.40
Consensus pattern (39 bp):
TACTGAATAATGTTAGAATACTGAATTGAACTGTAAAAT
Found at i:108861032 original size:45 final size:45
Alignment explanation
Indices: 108860982--108861088 Score: 164
Period size: 45 Copynumber: 2.4 Consensus size: 45
108860972 CGACTACTGT
108860982 TACTGTTACCGTTACTGTTATC-GATTC-GACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTA-CAGATTCAG-CACTTTGTGTGTCGAA
*
108861027 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
*
108861072 TACTGTTACTGTTACTG
1 TACTGTTACCGTTACTG
108861089 CTACTGCTAC
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
44 1 0.02
45 56 0.97
46 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.41
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
Found at i:108861103 original size:18 final size:18
Alignment explanation
Indices: 108861072--108861106 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
108861062 GTGTGTTGAA
* *
108861072 TACTGTTACTGTTACTGC
1 TACTGCTACCGTTACTGC
108861090 TACTGCTACCGTTACTG
1 TACTGCTACCGTTACTG
108861107 ATTACTGATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (18 bp):
TACTGCTACCGTTACTGC
Found at i:108862883 original size:9 final size:9
Alignment explanation
Indices: 108862869--108862913 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
108862859 AATGTTATTT
108862869 ATTATAAAA
1 ATTATAAAA
108862878 ATTATAAAA
1 ATTATAAAA
108862887 ATT-T-AAA
1 ATTATAAAA
108862894 ATT-TAAAA
1 ATTATAAAA
108862902 A-TATAATAA
1 ATTATAA-AA
108862911 ATT
1 ATT
108862914 CCCTAGTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
7 8 0.25
8 8 0.25
9 15 0.47
10 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (9 bp):
ATTATAAAA
Found at i:108862912 original size:17 final size:17
Alignment explanation
Indices: 108862871--108862913 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
108862861 TGTTATTTAT
108862871 TATAAAAATTATAAAAA
1 TATAAAAATTATAAAAA
*
108862888 T-TTAAAATT-TAAAAA
1 TATAAAAATTATAAAAA
108862903 TATAATAAATT
1 TATAA-AAATT
108862914 CCCTAGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 7 0.32
16 9 0.41
17 6 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TATAAAAATTATAAAAA
Found at i:108864669 original size:5 final size:5
Alignment explanation
Indices: 108864656--108864685 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
108864646 TGGCTAAAGG
*
108864656 GAAAA GAAAG GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA
108864686 TTGATGGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:108866088 original size:24 final size:23
Alignment explanation
Indices: 108866039--108866089 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
108866029 TAGTTCAATC
*
108866039 AAATAAATTATTAAAAATATAAA
1 AAATAAATTATTAAAAATAGAAA
* *
108866062 AAATAAAATTATTTAAAATAGAGA
1 AAAT-AAATTATTAAAAATAGAAA
108866086 AAAT
1 AAAT
108866090 TGATTCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (23 bp):
AAATAAATTATTAAAAATAGAAA
Found at i:108866419 original size:29 final size:29
Alignment explanation
Indices: 108866377--108866447 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
108866367 GAAGAAGAGA
* *
108866377 AAAAAAATAGAAAAAT-AAAAATAAAAAG
1 AAAATAATATAAAAATAAAAAATAAAAAG
* *
108866405 AGAAATAATAT-AAAATAAAAAATGAAAAT
1 A-AAATAATATAAAAATAAAAAATAAAAAG
108866434 AAAATAAT-TAAAAA
1 AAAATAATATAAAAA
108866448 ATATTTTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
27 1 0.03
28 17 0.47
29 18 0.50
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (29 bp):
AAAATAATATAAAAATAAAAAATAAAAAG
Found at i:108866423 original size:28 final size:27
Alignment explanation
Indices: 108866388--108866446 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
108866378 AAAAAATAGA
108866388 AAAAT-AAAAATAAAAAGAGAAATAATAT
1 AAAATAAAAAATAAAAAGA-AAATAAT-T
* *
108866416 AAAATAAAAAATGAAAATAAAATAATT
1 AAAATAAAAAATAAAAAGAAAATAATT
108866443 AAAA
1 AAAA
108866447 AATATTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 5 0.18
28 12 0.43
29 11 0.39
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (27 bp):
AAAATAAAAAATAAAAAGAAAATAATT
Found at i:108866431 original size:22 final size:22
Alignment explanation
Indices: 108866378--108866449 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
108866368 AAGAAGAGAA
108866378 AAAAAATAGAAA-AATA-AAAAT
1 AAAAAAT-GAAATAATATAAAAT
108866399 AAAAAGA-GAAATAATATAAAAT
1 AAAAA-ATGAAATAATATAAAAT
* *
108866421 AAAAAATGAAAATAAAAT-AATT
1 AAAAAATG-AAATAATATAAAAT
108866443 AAAAAAT
1 AAAAAAT
108866450 ATTTTTTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
20 4 0.09
21 10 0.23
22 22 0.50
23 8 0.18
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (22 bp):
AAAAAATGAAATAATATAAAAT
Found at i:108866440 original size:18 final size:19
Alignment explanation
Indices: 108866375--108866439 Score: 75
Period size: 18 Copynumber: 3.6 Consensus size: 19
108866365 AGGAAGAAGA
108866375 GAAAA-AAAATAGAAAAAT
1 GAAAATAAAATAGAAAAAT
* *
108866393 AAAAATAAAA-AGAGAAAT
1 GAAAATAAAATAGAAAAAT
*
108866411 -AATATAAAATA-AAAAAT
1 GAAAATAAAATAGAAAAAT
108866428 GAAAATAAAATA
1 GAAAATAAAATA
108866440 ATTAAAAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
17 13 0.33
18 22 0.56
19 4 0.10
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (19 bp):
GAAAATAAAATAGAAAAAT
Found at i:108877201 original size:6 final size:6
Alignment explanation
Indices: 108877190--108877221 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
108877180 AGTGTAGTGT
108877190 ATGTAG ATGTAG ATGTAG ATGTAG ATGTAG AT
1 ATGTAG ATGTAG ATGTAG ATGTAG ATGTAG AT
108877222 AGCTGATTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (6 bp):
ATGTAG
Found at i:108878872 original size:5 final size:5
Alignment explanation
Indices: 108878855--108878905 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
108878845 TTTCATTCTG
* * * *
108878855 ATCAT ATCTT ATCAT ATCAT AAT-GT ATTAT AACAT ATCAT ATCAT ATCAT
1 ATCAT ATCAT ATCAT ATCAT -ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT
108878905 A
1 A
108878906 ACATGTCCTA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
4 2 0.05
5 33 0.89
6 2 0.05
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (5 bp):
ATCAT
Found at i:108879406 original size:16 final size:15
Alignment explanation
Indices: 108879385--108879414 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
108879375 TTCACCGTTC
108879385 TTCTTTTCATTTTTCT
1 TTCTTTTC-TTTTTCT
108879401 TTCTTTTCTTTTTC
1 TTCTTTTCTTTTTC
108879415 ATTTTGCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (15 bp):
TTCTTTTCTTTTTCT
Found at i:108880844 original size:15 final size:16
Alignment explanation
Indices: 108880813--108880845 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
108880803 TACCCTGAAA
108880813 AATAGACATACTTATC
1 AATAGACATACTTATC
*
108880829 AATAGTCATA-TTATC
1 AATAGACATACTTATC
108880844 AA
1 AA
108880846 CATATACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.33
Consensus pattern (16 bp):
AATAGACATACTTATC
Found at i:108890093 original size:19 final size:20
Alignment explanation
Indices: 108890055--108890094 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
108890045 AATACTATGC
*
108890055 ATATATATATTTAGGGTTTA
1 ATATATATATTTAGGATTTA
*
108890075 ATATATA-ATTTAGTATTTA
1 ATATATATATTTAGGATTTA
108890094 A
1 A
108890095 CTTTGTCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (20 bp):
ATATATATATTTAGGATTTA
Found at i:108893007 original size:21 final size:21
Alignment explanation
Indices: 108892981--108893021 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
108892971 AGACGAGCAA
* *
108892981 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
108893002 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
108893022 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:108894958 original size:16 final size:16
Alignment explanation
Indices: 108894925--108894958 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
108894915 GGAGATTGTT
* *
108894925 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
108894941 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
108894957 AA
1 AA
108894959 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:108896809 original size:16 final size:16
Alignment explanation
Indices: 108896780--108896831 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
108896770 CTTCTTAATT
*
108896780 TTTCACTTCTTTTTCC
1 TTTCATTTCTTTTTCC
*
108896796 TTTCATATTCTTTTTCA
1 TTTCAT-TTCTTTTTCC
*
108896813 TTTCATTTCTCTTTCC
1 TTTCATTTCTTTTTCC
108896829 TTT
1 TTT
108896832 GTTTTTTCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 16 0.52
17 15 0.48
ACGTcount: A:0.10, C:0.25, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTCATTTCTTTTTCC
Found at i:108902574 original size:28 final size:28
Alignment explanation
Indices: 108902543--108902614 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
108902533 TTGATATTTT
*
108902543 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
108902571 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
108902599 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
108902615 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:108907806 original size:18 final size:19
Alignment explanation
Indices: 108907778--108907815 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
108907768 ATTCTTTTGA
*
108907778 AAATCATAAAAATATAAAT
1 AAATCATAAAAATAAAAAT
108907797 AAAT-ATAAAAATAAAAAT
1 AAATCATAAAAATAAAAAT
108907815 A
1 A
108907816 TATTTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (19 bp):
AAATCATAAAAATAAAAAT
Found at i:108911197 original size:110 final size:110
Alignment explanation
Indices: 108910979--108911199 Score: 410
Period size: 108 Copynumber: 2.0 Consensus size: 110
108910969 TTCAAATTTG
108910979 TATAAAATATCAATCTCTTTTATATATATATTGCATTTTATACAATTACAAATGTATTTTTTATT
1 TATAAAATATCAATCTCTTTTATATATATATTGCATTTTATACAATTACAAATGTATTTTTTATT
*
108911044 CCTGAACTTGATAGTTAAGTCTATTATAATATATATATATATATA
66 CCCGAACTTGATAGTTAAGTCTATTATAATATATATATATATATA
*
108911089 TATAAAATATTAATCTC-TTT-TATATATATTGCATTTTATACAATTACAAATGTATTTTTTATT
1 TATAAAATATCAATCTCTTTTATATATATATTGCATTTTATACAATTACAAATGTATTTTTTATT
108911152 CCCGAACTTGATAGTTAAGTCTATTATAATATATATATATATATA
66 CCCGAACTTGATAGTTAAGTCTATTATAATATATATATATATATA
108911197 TAT
1 TAT
108911200 TAGGTCTACT
Statistics
Matches: 109, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
108 90 0.83
109 3 0.03
110 16 0.15
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (110 bp):
TATAAAATATCAATCTCTTTTATATATATATTGCATTTTATACAATTACAAATGTATTTTTTATT
CCCGAACTTGATAGTTAAGTCTATTATAATATATATATATATATA
Found at i:108928727 original size:155 final size:156
Alignment explanation
Indices: 108928442--108928757 Score: 499
Period size: 155 Copynumber: 2.0 Consensus size: 156
108928432 TTTAACAGAC
108928442 GCATGATGTCACAACGAACAAGCGGCAACATCGTGACGAGGGTCATCGGGGGACAAGCAAAGATC
1 GCATGATGTCACAACGAACAAGCGGCAACATCGTGACGAGGGTCATC-GGGGACAAGCAAAGATC
* *
108928507 TCTTGAGGTAGGAGTAGGGGCGACGTCACGAAGAGGAGAGTCATGACGTCGCAACGATATTTCAC
65 TCTTGAGGTAGGAGCAGGGGCGACGTCACGAAGAGGAGAGTCATGACGTCGCAACGATATCTCAC
*
108928572 CTAATGTAGCTGCGTTTTAGATTCCAA
130 CTAATGTAGCTGCGTTTTAGACTCCAA
* * * *
108928599 GCATGATGTCACGACGAGCAAGCGGCAACGTCGTGACGAGGGTCATC-GGGACGAGCAAAGATCT
1 GCATGATGTCACAACGAACAAGCGGCAACATCGTGACGAGGGTCATCGGGGACAAGCAAAGATCT
* * * * *
108928663 CTTGAGGTAGGAGCAGGGGCGATGTCATGAAGAGGAGATTCATGATGTCGCGACGATATCTCACC
66 CTTGAGGTAGGAGCAGGGGCGACGTCACGAAGAGGAGAGTCATGACGTCGCAACGATATCTCACC
*
108928728 TAATGTAGTTGCGTTTTAGACTCCAA
131 TAATGTAGCTGCGTTTTAGACTCCAA
108928754 GCAT
1 GCAT
108928758 TACTTCTTCA
Statistics
Matches: 146, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
155 102 0.70
157 44 0.30
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (156 bp):
GCATGATGTCACAACGAACAAGCGGCAACATCGTGACGAGGGTCATCGGGGACAAGCAAAGATCT
CTTGAGGTAGGAGCAGGGGCGACGTCACGAAGAGGAGAGTCATGACGTCGCAACGATATCTCACC
TAATGTAGCTGCGTTTTAGACTCCAA
Found at i:108931594 original size:21 final size:22
Alignment explanation
Indices: 108931570--108931621 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 22
108931560 ACTTTTCTTC
* *
108931570 ATATGATATAAAT-CATATAAT
1 ATATGATATAAATAAAAATAAT
* *
108931591 ATATAAAATAAATGAAAAATAAT
1 ATATGATATAAAT-AAAAATAAT
108931614 ATATGATA
1 ATATGATA
108931622 AATTTAAAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 11 0.48
23 12 0.52
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (22 bp):
ATATGATATAAATAAAAATAAT
Found at i:108938390 original size:44 final size:44
Alignment explanation
Indices: 108938327--108938413 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
108938317 TTAATCTCTA
108938327 TTTTCTCCCTTACAAAATCTCATACTTGAGATTTATGGTTTTAG
1 TTTTCTCCCTTACAAAATCTCATACTTGAGATTTATGGTTTTAG
108938371 TTTTCTCCCTTACAAAATCTCATACTTGAGATTTATGGTTTTA
1 TTTTCTCCCTTACAAAATCTCATACTTGAGATTTATGGTTTTA
108938414 ATTACTAAAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.46
Consensus pattern (44 bp):
TTTTCTCCCTTACAAAATCTCATACTTGAGATTTATGGTTTTAG
Found at i:108943303 original size:43 final size:43
Alignment explanation
Indices: 108943256--108943352 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 43
108943246 TAGCCTAGCT
*
108943256 ATGGTCTTACATGAAATCAAATAACGATGCCAATGCCCCAGAC
1 ATGGTCTTACACGAAATCAAATAACGATGCCAATGCCCCAGAC
* ** * *
108943299 ATGGTC-TACACGTAATCTCATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGAAATCAAATAACGATGCCAATGCCCCAGAC
108943341 ATGGTCTTACAC
1 ATGGTCTTACAC
108943353 ATAATTACAT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 36 0.77
43 11 0.23
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCAAATAACGATGCCAATGCCCCAGAC
Found at i:108947067 original size:75 final size:75
Alignment explanation
Indices: 108946893--108947132 Score: 367
Period size: 75 Copynumber: 3.2 Consensus size: 75
108946883 AAAATGAAAG
108946893 TGAGCCCCA-CTCTAGTTGGATTAACCAACAATATTTGCACCCAGTGCTAGTCAGAT-AACCGAC
1 TGAG-CCCAGCTCTAGTTGGATTAACCAACAATATTTGCACCCAGTGCTAGTCAGATAAACCGAC
*
108946956 GATGATGATTA
65 GATAATGATTA
* * * *
108946967 TGAGCCCAGCTCTAGTTAGATTAACCACCAATATTTGCACCCAGTGCTAGTCGGATAAACCGACA
1 TGAGCCCAGCTCTAGTTGGATTAACCAACAATATTTGCACCCAGTGCTAGTCAGATAAACCGACG
*
108947032 ATAATAATTA
66 ATAATGATTA
** *
108947042 TGAGCCCAGCTCTAGTTGGATTAACCAACAATATTTGCACCCAGTGCTAGTTTGATAAACCAACG
1 TGAGCCCAGCTCTAGTTGGATTAACCAACAATATTTGCACCCAGTGCTAGTCAGATAAACCGACG
108947107 ATAATGATTA
66 ATAATGATTA
*
108947117 TGAGCCTAGCTCTAGT
1 TGAGCCCAGCTCTAGT
108947133 CAAATATATC
Statistics
Matches: 150, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
73 4 0.03
74 48 0.32
75 98 0.65
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (75 bp):
TGAGCCCAGCTCTAGTTGGATTAACCAACAATATTTGCACCCAGTGCTAGTCAGATAAACCGACG
ATAATGATTA
Found at i:108947073 original size:40 final size:37
Alignment explanation
Indices: 108946963--108947132 Score: 122
Period size: 35 Copynumber: 4.5 Consensus size: 37
108946953 GACGATGATG
* * *
108946963 ATTATGAGCCCAGCTCTAGTTAGATTAACC-ACCAAT
1 ATTATGAGCCCAGCTCTAGTTGGATAAACCAACTAAT
* *
108946999 ATT-TGCA-CCCAG-TGCTAGTCGGATAAACCGACAATAAT
1 ATTATG-AGCCCAGCT-CTAGTTGGATAAACC-A-ACTAAT
*
108947037 AATTATGAGCCCAGCTCTAGTTGGATTAACCAAC-AAT
1 -ATTATGAGCCCAGCTCTAGTTGGATAAACCAACTAAT
*
108947074 ATT-TGCA-CCCAG-TGCTAGTTTGATAAACCAACGATAAT
1 ATTATG-AGCCCAGCT-CTAGTTGGATAAACCAAC--TAAT
*
108947112 GATTATGAGCCTAGCTCTAGT
1 -ATTATGAGCCCAGCTCTAGT
108947133 CAAATATATC
Statistics
Matches: 105, Mismatches: 11, Indels: 32
0.71 0.07 0.22
Matches are distributed among these distances:
34 2 0.02
35 42 0.40
36 8 0.08
37 3 0.03
38 8 0.08
39 9 0.09
40 31 0.30
41 2 0.02
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (37 bp):
ATTATGAGCCCAGCTCTAGTTGGATAAACCAACTAAT
Found at i:108947104 original size:35 final size:35
Alignment explanation
Indices: 108946904--108947105 Score: 153
Period size: 35 Copynumber: 5.5 Consensus size: 35
108946894 GAGCCCCACT
108946904 CTAGTTGGATTAACCAACAATATTTGCACCCAGTG
1 CTAGTTGGATTAACCAACAATATTTGCACCCAGTG
** *
108946939 CTAGTCAGA-TAACCGACGATGATGATTATG-AGCCCAGCT-
1 CTAGTTGGATTAACCAAC-A--AT-ATT-TGCA-CCCAG-TG
* *
108946978 CTAGTTAGATTAACCACCAATATTTGCACCCAGTG
1 CTAGTTGGATTAACCAACAATATTTGCACCCAGTG
* * *
108947013 CTAGTCGGATAAACCGACAATAATAATTATG-AGCCCAGCT-
1 CTAGTTGGATTAA-C--CAACAAT-ATT-TGCA-CCCAG-TG
108947053 CTAGTTGGATTAACCAACAATATTTGCACCCAGTG
1 CTAGTTGGATTAACCAACAATATTTGCACCCAGTG
* *
108947088 CTAGTTTGATAAACCAAC
1 CTAGTTGGATTAACCAAC
108947106 GATAATGATT
Statistics
Matches: 132, Mismatches: 16, Indels: 38
0.71 0.09 0.20
Matches are distributed among these distances:
34 9 0.07
35 48 0.36
36 9 0.07
37 10 0.08
38 9 0.07
39 21 0.16
40 25 0.19
41 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (35 bp):
CTAGTTGGATTAACCAACAATATTTGCACCCAGTG
Found at i:108950221 original size:30 final size:30
Alignment explanation
Indices: 108950185--108950244 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
108950175 TGAACACTCT
108950185 TCCCCTTTTCTTCCTCAAAATTTCAGCAGC
1 TCCCCTTTTCTTCCTCAAAATTTCAGCAGC
*
108950215 TCCCCTTTTCTTCCTCAAAATTTCGGCAGC
1 TCCCCTTTTCTTCCTCAAAATTTCAGCAGC
108950245 AAGAGCAGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.18, C:0.37, G:0.08, T:0.37
Consensus pattern (30 bp):
TCCCCTTTTCTTCCTCAAAATTTCAGCAGC
Found at i:108953055 original size:26 final size:24
Alignment explanation
Indices: 108953019--108953067 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
108953009 AAAAAATAAA
* *
108953019 ATAAAATATTATATAATATTTAAAAT
1 ATAAAAAATTA-ATAA-ATTAAAAAT
108953045 ATAAAAAATTAATAAATTAAAAA
1 ATAAAAAATTAATAAATTAAAAA
108953068 AATTAGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 4 0.19
26 10 0.48
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (24 bp):
ATAAAAAATTAATAAATTAAAAAT
Found at i:108955479 original size:22 final size:21
Alignment explanation
Indices: 108955420--108955462 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
108955410 AATTTTTAAG
108955420 GATATGCAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
108955439 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGAAGATAT
108955460 GAT
1 GAT
108955463 CTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
21 9 0.41
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (21 bp):
GATATGCAATCTTGAAGATAT
Found at i:108958558 original size:12 final size:12
Alignment explanation
Indices: 108958541--108958565 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
108958531 TAAAGTTATT
108958541 AAAAAGAGAAAG
1 AAAAAGAGAAAG
108958553 AAAAAGAGAAAG
1 AAAAAGAGAAAG
108958565 A
1 A
108958566 GAGAAGAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:108961073 original size:9 final size:8
Alignment explanation
Indices: 108961058--108961104 Score: 53
Period size: 9 Copynumber: 5.9 Consensus size: 8
108961048 CTATTTCAAA
108961058 AAAAAAAG
1 AAAAAAAG
108961066 AGAAAAAA-
1 A-AAAAAAG
*
108961074 ATAAAAAG
1 AAAAAAAG
108961082 -AAAAAAG
1 AAAAAAAG
108961089 AAAAAAAAG
1 -AAAAAAAG
108961098 AAAAAAA
1 AAAAAAA
108961105 ATGGAGAGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
7 11 0.33
8 9 0.27
9 13 0.39
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (8 bp):
AAAAAAAG
Found at i:108961079 original size:16 final size:15
Alignment explanation
Indices: 108961055--108961106 Score: 70
Period size: 16 Copynumber: 3.4 Consensus size: 15
108961045 CTTCTATTTC
108961055 AAAAA-AAAAAGAGAA
1 AAAAATAAAAAGA-AA
108961070 AAAAATAAAAAGAAA
1 AAAAATAAAAAGAAA
*
108961085 AAAGAAAAAAAAGAAA
1 AAA-AATAAAAAGAAA
108961101 AAAAAT
1 AAAAAT
108961107 GGAGAGGCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 12 0.36
16 21 0.64
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.04
Consensus pattern (15 bp):
AAAAATAAAAAGAAA
Found at i:108961103 original size:23 final size:22
Alignment explanation
Indices: 108961055--108961105 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
108961045 CTTCTATTTC
*
108961055 AAAAAAAAAAGAGAAAAAAATA
1 AAAAAAAAAAGAGAAAAAAAAA
* *
108961077 AAAAGAAAAA-AGAAAAAAAAG
1 AAAAAAAAAAGAGAAAAAAAAA
108961098 AAAAAAAA
1 AAAAAAAA
108961106 TGGAGAGGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.88, C:0.00, G:0.10, T:0.02
Consensus pattern (22 bp):
AAAAAAAAAAGAGAAAAAAAAA
Found at i:108962204 original size:87 final size:87
Alignment explanation
Indices: 108962102--108962578 Score: 660
Period size: 87 Copynumber: 5.5 Consensus size: 87
108962092 GAAGATACCA
* *
108962102 GATTTGGCGTTTCTGTATTGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
108962167 TACGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
*
108962189 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTTACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
108962254 TACGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* * * * * *
108962276 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGAC--AGATGATTTGGC-GTCTC-TGTA
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT-
* * * *
108962337 TT--GTTAGGGAGTAGATCGAAGAT
65 TTACGTT--GAAGCAAATCTAAGAT
108962360 ACCAGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACG
1 ----GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACG
* *
108962425 TATTTACATTGAAGCAAATCTAAGAT
62 TGTTTACGTTGAAGCAAATCTAAGAT
* * * *
108962451 GATTCGGCATCTCTGTGTTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
108962516 TACGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* *
108962538 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACA
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACA
108962579 GATGATTTAG
Statistics
Matches: 343, Mismatches: 34, Indels: 26
0.85 0.08 0.06
Matches are distributed among these distances:
82 3 0.01
83 3 0.01
84 16 0.05
85 11 0.03
87 241 0.70
88 37 0.11
90 11 0.03
91 17 0.05
92 2 0.01
93 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (87 bp):
GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
TACGTTGAAGCAAATCTAAGAT
Found at i:108962519 original size:262 final size:262
Alignment explanation
Indices: 108962054--108962678 Score: 1106
Period size: 262 Copynumber: 2.4 Consensus size: 262
108962044 AGCAGATCCA
* *
108962054 AGATGATTTGGCGTCTCTATATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTTTCTGTA
1 AGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTA
* *
108962119 TTGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCT
66 TTGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTATTTACATTGAAGCAAATCT
* * * *
108962184 AAGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTTAC
131 AAGATGATTCGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
*
108962249 GTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAG
196 GTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAG
108962314 AC
261 AC
* *
108962316 AGATGATTTGGCGTCTCTGTATTGTTAGGGAGTAGATCGAAGATACCAGATTTGGCGTCTCTGTA
1 AGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTA
*
108962381 TTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTATTTACATTGAAGCAAATCT
66 TTGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTATTTACATTGAAGCAAATCT
*
108962446 AAGATGATTCGGCATCTCTGTGTTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
131 AAGATGATTCGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
108962511 GTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAG
196 GTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAG
108962576 AC
261 AC
*
108962578 AGATGATTTAGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTA
1 AGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTA
* *
108962643 TTGGCTGGGAGCAGATCGAAGATATAGCAGATTTGG
66 TTGGCAGGGAGCAGATCGAAGATATAGCTGATTTGG
108962679 TGTCTCTATA
Statistics
Matches: 344, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
262 344 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (262 bp):
AGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTA
TTGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTATTTACATTGAAGCAAATCT
AAGATGATTCGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCAC
GTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAG
AC
Found at i:108962691 original size:46 final size:44
Alignment explanation
Indices: 108962058--108963191 Score: 600
Period size: 44 Copynumber: 25.9 Consensus size: 44
108962048 GATCCAAGAT
* * * *
108962058 GATTTGGCGTCTCTATATTGTCAGGGAGCAGATCGAAGATACCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * *
108962102 GATTTGGCGTTTCTGTATTGGCAGGGAGCAGATCGAAGATATAGCT
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAGCA
* * * ** * *
108962148 GATTTGGCTTTCACGTGT-TTACGTTGA-AGCAAATCTAAGAT----
1 GATTTGGC-GTCTC-TGTATT-GGCAGAGAGCAGATCGAAGATAGCA
* *
108962189 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCT
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAGCA
* * * ** * *
108962235 GATTTGGCTTTTACGTGT-TTACGTTGA-AGCAAATCTAAGAT----
1 GATTTGGCGTCT-C-TGTATT-GGCAGAGAGCAGATCGAAGATAGCA
* * *
108962276 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGACAG-A
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
** * * *
108962319 TGATTTGGCGTCTCTGTATTGTTAGGGAGTAGATCGAAGATACCA
1 -GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* *
108962364 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCT
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAGCA
* * ** * *
108962410 GATTTGGC-TTTCACGTATTTACATTGA-AGCAAATCTAAGAT----
1 GATTTGGCGTCTC-TGTATTGGCA--GAGAGCAGATCGAAGATAGCA
* * * *
108962451 GATTCGGCATCTCTGTGTTGGCAGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAGCA
* * * ** * *
108962497 GATTTGGCTTTCACGTGT-TTACGTTGA-AGCAAATCTAAGAT----
1 GATTTGGC-GTCTC-TGTATT-GGCAGAGAGCAGATCGAAGATAGCA
* *
108962538 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAG-A
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * * *
108962581 TGATTTAGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCA
1 -GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* *
108962626 GATTTGGCGTCTCTGTATTGGCTGGGAGCAGATCGAAGATATAGCA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAGCA
* * *
108962672 GATTTGGTGTCTCTATATTGGCAGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAGCA
* * * * *
108962718 GATTTGGCTTTCACGTGT-TT-ACATTGA-AGCAAATCTAAGAT----
1 GATTTGGC-GTCTC-TGTATTGGCA--GAGAGCAGATCGAAGATAGCA
* *
108962759 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAG-A
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * * *
108962802 TGATTTAGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCA
1 -GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * *
108962847 GATTTGGCGTTTCTATATTGGCAGGGAGCAGATCGAAGACATAGCTA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAGC-A
* * ** * * *
108962894 -ATTTGGC-TTTCATGTGTTTAC-GTTGAAGCAAATCTAAGAT----
1 GATTTGGCGTCTC-TGTATTGGCAG-AG-AGCAGATCGAAGATAGCA
* * *
108962934 GATTTGGTGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCT
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAGCA
* * * ** *
108962980 GATTTGGCTTTCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT----
1 GATTTGGC-GTCTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATAGCA
* * * *
108963021 GATTTGGCATCTCTGTATTGGCAGAGAGCAAATCAAAGATAACA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * **
108963065 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
*
108963109 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGAA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
* * * * *
108963153 TATTTGACGTCTCTGTATTGTCAGAGAGCATATCAAAGA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
108963192 AAAGAACAAC
Statistics
Matches: 841, Mismatches: 163, Indels: 172
0.72 0.14 0.15
Matches are distributed among these distances:
39 30 0.04
40 96 0.11
41 71 0.08
42 13 0.02
44 361 0.43
45 25 0.03
46 127 0.15
47 92 0.11
48 26 0.03
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCA
Found at i:108962754 original size:221 final size:221
Alignment explanation
Indices: 108962468--108962899 Score: 803
Period size: 221 Copynumber: 2.0 Consensus size: 221
108962458 CATCTCTGTG
*
108962468 TTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCT
1 TTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAATCT
108962533 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAGATGATTTAGCGTCTCTGT
66 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAGATGATTTAGCGTCTCTGT
* *
108962598 ATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTATTGGCTGGGAGCAGATCGAA
131 ATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTATATTGGCAGGGAGCAGATCGAA
*
108962663 GATATAGC-AGATTTGGTGTCTCTATA
196 GACATAGCTA-ATTTGGTGTCTCTATA
108962689 TTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAATCT
1 TTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAATCT
108962754 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAGATGATTTAGCGTCTCTGT
66 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAGATGATTTAGCGTCTCTGT
*
108962819 ATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTTTCTATATTGGCAGGGAGCAGATCGAA
131 ATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTATATTGGCAGGGAGCAGATCGAA
108962884 GACATAGCTAATTTGG
196 GACATAGCTAATTTGG
108962900 CTTTCATGTG
Statistics
Matches: 205, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
221 204 1.00
222 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (221 bp):
TTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAATCT
AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAGATGATTTAGCGTCTCTGT
ATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTATATTGGCAGGGAGCAGATCGAA
GACATAGCTAATTTGGTGTCTCTATA
Found at i:108962764 original size:262 final size:256
Alignment explanation
Indices: 108962054--108963191 Score: 847
Period size: 262 Copynumber: 4.3 Consensus size: 256
108962044 AGCAGATCCA
* *
108962054 AGATGATTTGGCGTCTCTATATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTTTCTGTA
1 AGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTA
* * * ** *
108962119 TTGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCT
66 TTGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTGTCACGTATTT-GGCAGAAGCAAATCG
* * * * * * * *
108962184 AAGATGATTTGGC-GTCTC-TGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTT
130 AAGATGATTTGGCTTTCACGTGT-TT-ACATGAAGCAAATCGAAG--A-A-CTGATTTGGC-ATC
** *
108962247 ACGTGT-TTACGTTGA-AGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGTAGATC
188 AC-TGTATT-CGCAGAGAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
108962310 GAAGAC
251 GAAGAC
* *
108962316 AGATGATTTGGCGTCTCTGTATTGTTAGGGAGTAGATCGAAGATACCAGATTTGGCGTCTCTGTA
1 AGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTA
* * *
108962381 TTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTATTT-ACATTGAAGCAAATC
66 TTGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTGTCACGTATTTGGCA--GAAGCAAATC
* * * * ** * *
108962445 TAAGATGATTCGGCATCTC-TGTGTTGGCA-GAGAGCAGATCGAAGACATAGCTGATTTGGCTTT
129 GAAGATGATTTGGC-TTTCACGTGTTTACATGA-AGCAAATCGAAG--A-A-CTGATTTGGC-AT
**
108962508 CACGTGT-TTACGTTGA-AGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
187 CAC-TGTATT-CGCAGAGAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
108962571 CGAAGAC
250 CGAAGAC
*
108962578 AGATGATTTAGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTA
1 AGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTA
* * * *
108962643 TTGGCTGGGAGCAGATCGAAGATATAGCAGATTTGG-TGTCTC-TATATTGGCAGAGAGCAGATC
66 TTGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTGTCACGTAT-TTGGCAGA-AGCAAATC
*
108962706 GAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAATCTAAG-A-TGATTTGGCAT
129 GAAG----A--TGATTTGGCTTTCACGTGTTTACA-TGAAGCAAATCGAAGAACTGATTTGGCAT
* * * * * * * *
108962769 CTCTGTATTGGCAGAGAGCAGATCGAAGACAGATGATTTAGCGTCTCTGTATTGTCAGGGAGCAG
187 CACTGTATTCGCAGAGAGCAAATC---TA-AGATGATTTGGCATCTCTGTATTGGCAGAGAGCAG
*
108962834 ATCGAAGAT
248 ATCGAAGAC
* * * * * *
108962843 ACCA-GATTTGGCGTTTCTATATTGGCAGGGAGCAGATCGAAGACATAGCTA-ATTTGGC-TTTC
1 A-GATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAG--ATA-CCAGATTTGGCGTCTC
* ** * * * * *
108962905 ATGTGTTTAC-GTTGA--AG--C-AA-ATCTAAGATGATTTGG-TGTCTCTGTA-TTGGCAGGGA
62 -TGTATTGGCAG-GGAGCAGATCGAAGATAT-AGCTGATTTGGCTGTCAC-GTATTTGGCA-GAA
* * * *
108962961 GCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAG-A-TGAT
122 GCAAATCGAAG----A--TGATTTGGCTTTCACGTGTTTAC-ATGAAGCAAATCGAAGAACTGAT
* * * *
108963024 TTGGCATCTCTGTATTGGCAGAGAGCAAATCAAAGATAACAGATTTGACATCTCTGTATTGGCAG
180 TTGGCATCACTGTATTCGCAGAGAGCAAATCTAAGAT----GATTTGGCATCTCTGTATTGGCAG
*
108963089 AGAGCAGATCGAAGAT
241 AGAGCAGATCGAAGAC
* * ** * *
108963105 A-ATAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGAATATTTGACGTCTCTGT
1 AGAT-GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGT
* * * *
108963169 ATTGTCAGAGAGCATATCAAAGA
65 ATTGGCAGGGAGCAGATCGAAGA
108963192 AAAGAACAAC
Statistics
Matches: 744, Mismatches: 82, Indels: 96
0.81 0.09 0.10
Matches are distributed among these distances:
258 4 0.01
259 2 0.00
260 29 0.04
261 36 0.05
262 525 0.71
263 3 0.00
264 10 0.01
265 79 0.11
266 9 0.01
267 33 0.04
268 12 0.02
269 2 0.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (256 bp):
AGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTA
TTGGCAGGGAGCAGATCGAAGATATAGCTGATTTGGCTGTCACGTATTTGGCAGAAGCAAATCGA
AGATGATTTGGCTTTCACGTGTTTACATGAAGCAAATCGAAGAACTGATTTGGCATCACTGTATT
CGCAGAGAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAC
Found at i:108962780 original size:87 final size:87
Alignment explanation
Indices: 108962672--108963059 Score: 462
Period size: 87 Copynumber: 4.4 Consensus size: 87
108962662 AGATATAGCA
* *
108962672 GATTTGGTGTCTCTATATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
108962737 TACATTGAAGCAAATCTAAGAT
66 TACATTGAAGCAAATCTAAGAT
* * * * *
108962759 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAC--AGATGATTTAGC-GTCTC-TGTA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT-
* * * * *
108962820 TTGTCA-GGGAGCAGATCGAAGAT
65 TT-ACATTGAAGCAAATCTAAGAT
* * * * *
108962843 ACCAGATTTGGCGTTTCTATATTGGCAGGGAGCAGATCGAAGACATAGCTAATTTGGCTTTCATG
1 ----GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACG
*
108962908 TGTTTACGTTGAAGCAAATCTAAGAT
62 TGTTTACATTGAAGCAAATCTAAGAT
* *
108962934 GATTTGGTGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
* *
108962999 TACGTTGAAGCAAGTCTAAGAT
66 TACATTGAAGCAAATCTAAGAT
* * *
108963021 GATTTGGCATCTCTGTATTGGCAGAGAGCAAATCAAAGA
1 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGA
108963060 TAACAGATTT
Statistics
Matches: 251, Mismatches: 39, Indels: 22
0.80 0.12 0.07
Matches are distributed among these distances:
83 3 0.01
84 18 0.07
85 12 0.05
87 152 0.61
88 36 0.14
90 10 0.04
91 17 0.07
92 3 0.01
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (87 bp):
GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
TACATTGAAGCAAATCTAAGAT
Found at i:108962922 original size:175 final size:176
Alignment explanation
Indices: 108962578--108962974 Score: 609
Period size: 175 Copynumber: 2.3 Consensus size: 176
108962568 GATCGAAGAC
* * * *
108962578 AGATGATTTAGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGTA
1 AGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACACCAGATTTAGCGTCTCTGTA
* * *
108962643 TTGGCTGGGAGCAGATCGAAGATATAGCAGATTTGGTGTCTCTATATTGGCAGAGAGCAGATCGA
66 TTGGCAGGGAGCAGATCGAAGA-ATACCAGATTTGGCGTCTCTATATTGGCAGAGAGCAGATCGA
*
108962708 AGACATAGCTGATTTGGCTTTCACGTGTTTACATTGAAGCAAATCTA
130 AGACATAGCTAATTTGGCTTTCACGTGTTTACATTGAAGCAAATCTA
* * *
108962755 AGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACA-GATGATTTAGCGTCTCTGT
1 AGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACACCA-GATTTAGCGTCTCTGT
* * *
108962819 ATTGTCAGGGAGCAGATCGAAG-ATACCAGATTTGGCGTTTCTATATTGGCAGGGAGCAGATCGA
65 ATTGGCAGGGAGCAGATCGAAGAATACCAGATTTGGCGTCTCTATATTGGCAGAGAGCAGATCGA
* *
108962883 AGACATAGCTAATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCTA
130 AGACATAGCTAATTTGGCTTTCACGTGTTTACATTGAAGCAAATCTA
*
108962930 AGATGATTTGGTGTCTCTGTATTGGCAGGGAGCAGATCGAAGACA
1 AGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACA
108962975 TAGCTGATTT
Statistics
Matches: 200, Mismatches: 19, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
175 124 0.62
176 1 0.00
177 75 0.38
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (176 bp):
AGATGATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACACCAGATTTAGCGTCTCTGTA
TTGGCAGGGAGCAGATCGAAGAATACCAGATTTGGCGTCTCTATATTGGCAGAGAGCAGATCGAA
GACATAGCTAATTTGGCTTTCACGTGTTTACATTGAAGCAAATCTA
Found at i:108962949 original size:483 final size:483
Alignment explanation
Indices: 108962189--108963191 Score: 1609
Period size: 483 Copynumber: 2.1 Consensus size: 483
108962179 AATCTAAGAT
* * *
108962189 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTTACGTGTT
1 GATTTGGCGTCTCTATATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
* *
108962254 TACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGACAGA
66 TACATTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAGA
* * * *
108962319 TGATTTGGCGTCTCTGTATTGTTAGGGAGTAGATCGAAGATACCAGATTTGGCGTCTCTGTATTG
131 TGATTTAGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTATATTG
*
108962384 GCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTATTTACATTGAAGCAAATCTAAG
196 GCAGGGAGCAGATCGAAGACATAGCTAATTTGGCTTTCACGTATTTACATTGAAGCAAATCTAAG
*
108962449 ATGATTCGGCATCTCTGTGTTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTG
261 ATGATTCGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTG
* *
108962514 TTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACA
326 TTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCAAAGACA
* * * * *
108962579 GA-TGATTT-AGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTGT
391 -ACAGATTTGA-CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGT
* *
108962642 ATTGGCTGGGAGCAGATCGAAGATATAGCA
454 ATTGGCAGAGAGCAGATCGAAGATATAGCA
*
108962672 GATTTGGTGTCTCTATATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTATATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
108962737 TACATTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAGA
66 TACATTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAGA
*
108962802 TGATTTAGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTTTCTATATTG
131 TGATTTAGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTATATTG
* * *
108962867 GCAGGGAGCAGATCGAAGACATAGCTAATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCTAAG
196 GCAGGGAGCAGATCGAAGACATAGCTAATTTGGCTTTCACGTATTTACATTGAAGCAAATCTAAG
* ** *
108962932 ATGATTTGGTGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTG
261 ATGATTCGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTG
* *
108962997 TTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCAAAGATA
326 TTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCAAAGACA
*
108963062 ACAGATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTAT
391 ACAGATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
*
108963127 TGGCAGAGAGCAGATCGAAG--ATAGAA
456 TGGCAGAGAGCAGATCGAAGATATAGCA
* * * * * *
108963153 TATTTGACGTCTCTGTATTGTCAGAGAGCATATCAAAGA
1 GATTTGGCGTCTCTATATTGGCAGAGAGCAGATCGAAGA
108963192 AAAGAACAAC
Statistics
Matches: 478, Mismatches: 40, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
481 37 0.08
482 1 0.00
483 439 0.92
484 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (483 bp):
GATTTGGCGTCTCTATATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
TACATTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACAGA
TGATTTAGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATACCAGATTTGGCGTCTCTATATTG
GCAGGGAGCAGATCGAAGACATAGCTAATTTGGCTTTCACGTATTTACATTGAAGCAAATCTAAG
ATGATTCGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTG
TTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAAATCAAAGACA
ACAGATTTGACATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
TGGCAGAGAGCAGATCGAAGATATAGCA
Found at i:108963386 original size:44 final size:44
Alignment explanation
Indices: 108963244--108963743 Score: 203
Period size: 44 Copynumber: 11.1 Consensus size: 44
108963234 GATCCAAGAT
* *
108963244 GATTTGGCAT-TCCTGTGTTTACAGGAAACAGATCGAAGACATAGCA
1 GATTTGGCATCT-CTGTGTTTACAGGGAACAGATTGAAG--ATAGCA
* * * * ** ***
108963290 GATCTGACAT-TCCTGTGCTTACAGCGAAGCAGATCAAAGATTTTA
1 GATTTGGCATCT-CTGTGTTTACAGGGAA-CAGATTGAAGATAGCA
** *
108963335 -ACATGGCATCTCTGTGTTTATAGGGAACA-AGTTGAAGATAGCA
1 GATTTGGCATCTCTGTGTTTACAGGGAACAGA-TTGAAGATAGCA
* **
108963378 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCAAAGACATAGCA
1 GATTTGGCATCTCTGTGTTTACAGGGAACAGATTGAAG--ATAGCA
* * **
108963424 GATTTGACAT-TCTTGTGTTTACAGTGAAGCAGATTGAAGATTTCA
1 GATTTGGCATCTC-TGTGTTTACAGGGAA-CAGATTGAAGATAGCA
* * *
108963469 GCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGTA
1 G-ATTTGGCATCTCTGTGTTTACAGGGAACAGA-TTGAAGATAGCA
** * * * * * *
108963512 GATTTGGCATCTCCATATTCGACGGGGAGCAGATTAAAGACATAGTA
1 GATTTGGCATCTCTGTGTT-TACAGGGAACAGATTGAAG--ATAGCA
* * * ** **
108963559 GATCTGACCT-TCATGTGTTTACATCGAAGCAGATCCAAGAT-GACA
1 GATTTGGCATCTC-TGTGTTTACAGGGAA-CAGATTGAAGATAG-CA
* * * * * * * * *
108963604 GATTTGGCATCTTTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTGTT-TACAGGGAACAGATTGAAGATAGCA
* * * *
108963649 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTGTT-TACAGGGAACAGATTGAAGATAGCA
* * * * * * *
108963693 AATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTGTT-TACAGGGAACAGATTGAAGATAGCA
108963738 GATTTG
1 GATTTG
108963744 ACGTCTCTCT
Statistics
Matches: 343, Mismatches: 86, Indels: 51
0.71 0.18 0.11
Matches are distributed among these distances:
42 3 0.01
43 21 0.06
44 119 0.35
45 94 0.27
46 65 0.19
47 41 0.12
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (44 bp):
GATTTGGCATCTCTGTGTTTACAGGGAACAGATTGAAGATAGCA
Found at i:108963396 original size:134 final size:134
Alignment explanation
Indices: 108963244--108963599 Score: 471
Period size: 134 Copynumber: 2.6 Consensus size: 134
108963234 GATCCAAGAT
* * * * *
108963244 GATTTGGCATTCCTGTGTTTACAGGAAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCAAAGACATAGCAGATCTGACATTCATGTGTT
* *
108963309 TACAGCGAAGCAGATCAAAGATTTTAACATGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
108963374 AGCA
131 AGCA
* *
108963378 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCAAAGACATAGCAGATTTGACATTCTTGTGTT
1 GATTTGGCATCCCTGTGTTTACAGGGAACAGATCAAAGACATAGCAGATCTGACATTCATGTGTT
* ** *
108963443 TACAGTGAAGCAGATTGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
66 TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
*
108963508 AGTA
131 AGCA
* ** * * * * *
108963512 GATTTGGCATCTCCATAT-TCGACGGGGAGCAGATTAAAGACATAGTAGATCTGACCTTCATGTG
1 GATTTGGCATC-CC-TGTGTTTACAGGGAACAGATCAAAGACATAGCAGATCTGACATTCATGTG
* *
108963576 TTTACATCGAAGCAGATCCAAGAT
64 TTTACAGCGAAGCAGATCAAAGAT
108963600 GACAGATTTG
Statistics
Matches: 193, Mismatches: 27, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
134 132 0.68
135 59 0.31
136 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (134 bp):
GATTTGGCATCCCTGTGTTTACAGGGAACAGATCAAAGACATAGCAGATCTGACATTCATGTGTT
TACAGCGAAGCAGATCAAAGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
AGCA
Found at i:108963666 original size:45 final size:45
Alignment explanation
Indices: 108963586--108963785 Score: 258
Period size: 45 Copynumber: 4.5 Consensus size: 45
108963576 TTTACATCGA
* * *
108963586 AGCAGATCCAAGATGACAGATTTGGCATCTTTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
108963631 AGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
108963676 AGCAGATTGAAGA-AGCAAATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * * **
108963720 AGCAGATCGAAGATAACAGATTTGACGTCTCTCTATTAGATAGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
108963765 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAACAGAT
108963786 ATCGCCTTCC
Statistics
Matches: 134, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 41 0.31
45 93 0.69
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:108963710 original size:89 final size:89
Alignment explanation
Indices: 108963605--108963771 Score: 262
Period size: 89 Copynumber: 1.9 Consensus size: 89
108963595 AAGATGACAG
* * * *
108963605 ATTTGGCATCTTTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGACATCTCTCTATTAG
*
108963670 ACGGGGAGCAGATTGAAGAAGCAA
66 ACAGGGAGCAGATTGAAGAAGCAA
* *
108963694 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGACGTCTCTCTATTAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGACATCTCTCTATTAG
*
108963759 ATAGGGAGCAGAT
66 ACAGGGAGCAGAT
108963772 CAAAGATAGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 70 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (89 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGACATCTCTCTATTAG
ACAGGGAGCAGATTGAAGAAGCAA
Found at i:108966760 original size:20 final size:22
Alignment explanation
Indices: 108966732--108966776 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
108966722 AAATATATAT
108966732 ATTTGAAAT-TATTTTTTAA-A
1 ATTTGAAATATATTTTTTAATA
*
108966752 ATTTTAAATATATTTTTTAATA
1 ATTTGAAATATATTTTTTAATA
108966774 ATT
1 ATT
108966777 AAAAATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.36
21 10 0.45
22 4 0.18
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
ATTTGAAATATATTTTTTAATA
Found at i:108966777 original size:35 final size:33
Alignment explanation
Indices: 108966700--108966777 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 33
108966690 ATTTGAAATG
108966700 TTTTATAA-TATTTTTTAATTTTAAATATATAT
1 TTTTATAATTATTTTTTAATTTTAAATATATAT
*
108966732 ATTTGA-AATTATTTTTTAAAATTTTAAATATAT-T
1 -TTTTATAATTATTTTTT--AATTTTAAATATATAT
108966766 TTTTAATAATTA
1 TTTT-ATAATTA
108966778 AAAATATTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
32 2 0.05
33 15 0.39
34 2 0.05
35 19 0.50
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (33 bp):
TTTTATAATTATTTTTTAATTTTAAATATATAT
Found at i:108966778 original size:20 final size:20
Alignment explanation
Indices: 108966732--108966786 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 20
108966722 AAATATATAT
108966732 ATTTGAAAT-TATTTTTTAAA
1 ATTT-AAATATATTTTTTAAA
108966752 ATTTTAAATATATTTTTTAATA
1 A-TTTAAATATATTTTTTAA-A
*
108966774 A-TTAAAAATATTT
1 ATTTAAATATATTT
108966787 AAATATTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 16 0.52
21 13 0.42
22 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTTAAATATATTTTTTAAA
Found at i:108966782 original size:22 final size:21
Alignment explanation
Indices: 108966737--108966784 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
108966727 TATATATTTG
**
108966737 AAAT-TATTTTTTAAAATTTT
1 AAATATATTTTTTAAAATTAA
108966757 AAATATATTTTTTAATAATTAA
1 AAATATATTTTTTAA-AATTAA
108966779 AAATAT
1 AAATAT
108966785 TTAAATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 4 0.17
21 10 0.42
22 10 0.42
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
AAATATATTTTTTAAAATTAA
Found at i:108966865 original size:16 final size:16
Alignment explanation
Indices: 108966826--108966874 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
108966816 TTGTTATTAG
108966826 TTTTATAATATTTTAAA
1 TTTTA-AATATTTTAAA
*
108966843 -TGT--ATATTTTAAA
1 TTTTAAATATTTTAAA
108966856 TTTTAAATATTTTAAA
1 TTTTAAATATTTTAAA
108966872 TTT
1 TTT
108966875 GTTTTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
13 10 0.37
14 2 0.07
16 15 0.56
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (16 bp):
TTTTAAATATTTTAAA
Found at i:108966897 original size:30 final size:28
Alignment explanation
Indices: 108966824--108966904 Score: 83
Period size: 30 Copynumber: 2.8 Consensus size: 28
108966814 ATTTGTTATT
108966824 AGTTTTATAATATTTTAAATGTATATTTTAA
1 AGTTTT-TAATATTTTAAAT-T-TATTTTAA
* *
108966855 A-TTTTAAATATTTTAAATTTGTTTTATA
1 AGTTTTTAATATTTTAAATTTATTTTA-A
*
108966883 ATGTTTTTAATATTTTTAATTT
1 A-GTTTTTAATATTTTAAATTT
108966905 TTTAAAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
27 6 0.14
28 3 0.07
29 12 0.28
30 21 0.49
31 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (28 bp):
AGTTTTTAATATTTTAAATTTATTTTAA
Found at i:108967009 original size:12 final size:13
Alignment explanation
Indices: 108966994--108967045 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 13
108966984 ATTTTTAAAA
108966994 TTTTAAATATAATT
1 TTTTAAATATAA-T
108967008 TTTATAAATTATTAAT
1 TTT-TAAA-TA-TAAT
108967024 TTTTAAAT-TAA-
1 TTTTAAATATAAT
108967035 TTTTAAATATA
1 TTTTAAATATA
108967046 TTCAAACATT
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
11 8 0.24
12 5 0.15
14 4 0.12
15 8 0.24
16 6 0.18
17 3 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTAAATATAAT
Found at i:108967029 original size:128 final size:129
Alignment explanation
Indices: 108966793--108967047 Score: 319
Period size: 128 Copynumber: 2.0 Consensus size: 129
108966783 ATTTAAATAT
*
108966793 TTTAAAAATATGACATTTCAAATTTGTTATTAGTTTTATAATATTTTAAATGTATATTTTAAATT
1 TTTAAAAATATGACATTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATATTTTAAATT
* *
108966858 TTAAATATTTTAAATTTGTTTTATAATGTTTTTAATATTTTT-AATT-TTTTAAAATATATTATG
66 TTAAATATTTTAAATTTGTTTTATAATATTATTAATATTTTTAAATTATTTT-AAATATATTATG
* ** *
108966921 TTTAAAGATATGATGTTTCAAATTTATTATTTG-TTTATAATATTTTAAATGTATATTTTAAATA
1 TTTAAAAATATGACATTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATATTTT-AA-A
108966985 TTTTTAAA-ATTTTAAATATAAT-TTTTATAA-ATTATT-A-ATTTTTAAATTAATTTTAAATAT
64 -TTTTAAATATTTTAAAT-T--TGTTTTATAATATTATTAATATTTTTAAATT-ATTTTAAATAT
108967045 ATT
124 ATT
108967048 CAAACATTTT
Statistics
Matches: 111, Mismatches: 7, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
127 26 0.23
128 36 0.32
129 15 0.14
130 21 0.19
131 12 0.11
132 1 0.01
ACGTcount: A:0.38, C:0.01, G:0.05, T:0.56
Consensus pattern (129 bp):
TTTAAAAATATGACATTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATATTTTAAATT
TTAAATATTTTAAATTTGTTTTATAATATTATTAATATTTTTAAATTATTTTAAATATATTATG
Found at i:108967078 original size:22 final size:22
Alignment explanation
Indices: 108967035--108967093 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 22
108967025 TTTAAATTAA
* *
108967035 TTTTAAA-TATATTCAAACATTT
1 TTTTAAATTAAATTTAAACA-TT
108967057 TTTTAAATTAAATTTAAA-ATT
1 TTTTAAATTAAATTTAAACATT
*
108967078 TTTAAAATTAATATTT
1 TTTTAAATTAA-ATTT
108967094 TATTTGGTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 12 0.38
22 12 0.38
23 8 0.25
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTTAAATTAAATTTAAACATT
Done.