Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 340 of 352
Found at i:108970415 original size:30 final size:30
Alignment explanation
Indices: 108970381--108970487 Score: 124
Period size: 30 Copynumber: 3.6 Consensus size: 30
108970371 CAGTGGTTGC
* * *
108970381 TCTGGGTGAAATAAACTTGAACTGCCTATG
1 TCTGGGTGATATGAACTTGAACTGCCCATG
*
108970411 TCTGGGTGATATGAACTCGAACTGCCCATG
1 TCTGGGTGATATGAACTTGAACTGCCCATG
* * ** *
108970441 TCCGAGTGATATGAACTTGAACCACCAATG
1 TCTGGGTGATATGAACTTGAACTGCCCATG
*
108970471 TCCGGGTGATATGAACT
1 TCTGGGTGATATGAACT
108970488 GCTCTGCGAC
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (30 bp):
TCTGGGTGATATGAACTTGAACTGCCCATG
Found at i:108970849 original size:10 final size:10
Alignment explanation
Indices: 108970832--108970871 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
108970822 ATTAATTTTC
108970832 ATTTATCTTT
1 ATTTATCTTT
*
108970842 AATTATCTTT
1 ATTTATCTTT
108970852 ATTTAT-TTGT
1 ATTTATCTT-T
108970862 ATTTATCTTT
1 ATTTATCTTT
108970872 TAGAATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:108979408 original size:13 final size:14
Alignment explanation
Indices: 108979384--108979418 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
108979374 TTACAATAAC
*
108979384 TATAAAATATAAAAA
1 TATAAAATA-AAAAT
108979399 TATAAAATAAAAAT
1 TATAAAATAAAAAT
108979413 TATAAA
1 TATAAA
108979419 TAACTTACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
TATAAAATAAAAAT
Found at i:108979586 original size:21 final size:21
Alignment explanation
Indices: 108979562--108979617 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
108979552 TGACCAATTA
108979562 TAATTTATAATTTTAATTTTT
1 TAATTTATAATTTTAATTTTT
*
108979583 TAATTT-TAATTTTTACTTTTT
1 TAATTTATAA-TTTTAATTTTT
* *
108979604 TAATATATATTTTT
1 TAATTTATAATTTT
108979618 GAATAATGTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 3 0.10
21 25 0.83
22 2 0.07
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (21 bp):
TAATTTATAATTTTAATTTTT
Found at i:108979603 original size:14 final size:14
Alignment explanation
Indices: 108979569--108979596 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
108979559 TTATAATTTA
108979569 TAATTTTAATTTTT
1 TAATTTTAATTTTT
108979583 TAATTTTAATTTTT
1 TAATTTTAATTTTT
108979597 ACTTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TAATTTTAATTTTT
Found at i:108980031 original size:29 final size:27
Alignment explanation
Indices: 108979998--108980056 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
108979988 AAATTTAATT
108979998 TTACTTAAAATTCAATTACTTTTCATAAA
1 TTACTTAAAATTC--TTACTTTTCATAAA
* **
108980027 TTACTTAAAGTTCTTGTTTTTCATAAA
1 TTACTTAAAATTCTTACTTTTCATAAA
108980054 TTA
1 TTA
108980057 AATAAACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 15 0.56
29 12 0.44
ACGTcount: A:0.36, C:0.12, G:0.03, T:0.49
Consensus pattern (27 bp):
TTACTTAAAATTCTTACTTTTCATAAA
Found at i:108980281 original size:25 final size:25
Alignment explanation
Indices: 108980243--108980290 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
108980233 AACAAGAACC
108980243 AATTGTACATTTTATTTGAATTTCT
1 AATTGTACATTTTATTTGAATTTCT
108980268 AATTGTAC-TCTTTATTTGAATTT
1 AATTGTACAT-TTTATTTGAATTT
108980291 TGATTAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.56
Consensus pattern (25 bp):
AATTGTACATTTTATTTGAATTTCT
Found at i:108986553 original size:32 final size:32
Alignment explanation
Indices: 108986508--108986571 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
108986498 TGTAAGAACC
108986508 TTCTCAAGATCGCTCTAAATCAGAATTGCTAT
1 TTCTCAAGATCGCTCTAAATCAGAATTGCTAT
*
108986540 TTCTCAAGGTCGCTCTAAATCAGAATTGCTAT
1 TTCTCAAGATCGCTCTAAATCAGAATTGCTAT
108986572 CATCCTAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (32 bp):
TTCTCAAGATCGCTCTAAATCAGAATTGCTAT
Found at i:108995643 original size:21 final size:21
Alignment explanation
Indices: 108995617--108995657 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
108995607 AGACGAGCAA
* *
108995617 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
108995638 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
108995658 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:109000934 original size:19 final size:19
Alignment explanation
Indices: 109000901--109000948 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
109000891 TAAACAATTC
109000901 AATAATATAAA--TAATAT
1 AATAATATAAATTTAATAT
*
109000918 AA-AATATGAAATTTAATTT
1 AATAATAT-AAATTTAATAT
109000937 AATAATATAAAT
1 AATAATATAAAT
109000949 AGTAGATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 5 0.19
17 5 0.19
19 11 0.42
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAATATAAATTTAATAT
Found at i:109004607 original size:18 final size:16
Alignment explanation
Indices: 109004583--109004626 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
109004573 TTTTATACCA
109004583 TATTATATAATTATT-T
1 TATTATAT-ATTATTGT
109004599 TATTATATATTATTGT
1 TATTATATATTATTGT
109004615 TATTATATATTA
1 TATTATATATTA
109004627 CTTTTTCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.22
16 21 0.78
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TATTATATATTATTGT
Found at i:109004624 original size:16 final size:15
Alignment explanation
Indices: 109004583--109004631 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 15
109004573 TTTTATACCA
109004583 TATTATATAATTATTT
1 TATTATAT-ATTATTT
109004599 TATTATATATTATTGT
1 TATTATATATTATT-T
109004615 TATTATATATTACTTT
1 TATTATATATTA-TTT
109004631 T
1 T
109004632 TCTTTTCTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.19
16 23 0.74
17 2 0.06
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (15 bp):
TATTATATATTATTT
Found at i:109012701 original size:21 final size:21
Alignment explanation
Indices: 109012662--109012701 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
109012652 CATTGAGGTC
* *
109012662 TTGAGAAGATTGTACTTGAGA
1 TTGAGAAAATTGTAATTGAGA
*
109012683 TTGAGAAAATTTTAATTGA
1 TTGAGAAAATTGTAATTGA
109012702 AGCTCAATCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.38
Consensus pattern (21 bp):
TTGAGAAAATTGTAATTGAGA
Found at i:109016487 original size:44 final size:44
Alignment explanation
Indices: 109016433--109016611 Score: 177
Period size: 44 Copynumber: 4.1 Consensus size: 44
109016423 TCAACATGGT
* *
109016433 ATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGC
1 ATCCTTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATTTGGC
* * *
109016477 ATCCTTGTGTTTATAGGGAACAGATCGAAGATAACAGATATGAC
1 ATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGGC
* * * * * **
109016521 ATTCTTGTGCTTACAGCGAAGCAGATCGAGGATTTCAGCA--TGGC
1 ATCCTTGTGTTTATAGGGAA-CAGATCGAAGATAGCAG-ATTTGGC
*
109016565 ATCCTTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGC
1 ATCCTTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATTTGGC
109016609 ATC
1 ATC
109016612 TCTGTATTGT
Statistics
Matches: 108, Mismatches: 21, Indels: 12
0.77 0.15 0.09
Matches are distributed among these distances:
42 2 0.02
43 11 0.10
44 79 0.73
45 15 0.14
46 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
ATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGGC
Found at i:109016653 original size:88 final size:89
Alignment explanation
Indices: 109016459--109016655 Score: 192
Period size: 88 Copynumber: 2.2 Consensus size: 89
109016449 GGAACAAGTT
*
109016459 GAAGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAACAGATATGACATT
1 GAAGATACCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAACAGATATGACATT
* **
109016524 CTTGTGCTTACAGCGAAGCAGATC
66 CTTGTGATTACAAAGAAGCAGATC
* ** * * * *
109016548 GAGGATTTCAGCA--TGGCATCCTTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCA
1 GAAGATACCAG-ATTTGGCATCCTTGTGTTTATAGGGAACAGA-TCGAAGATAACAGATATGACA
*
109016610 -TCTCTGT-ATTGTCAAAG-AGCATG-TC
64 TTCT-TGTGATT-ACAAAGAAGCA-GATC
109016635 GAAGATACCAGATTTGGCATC
1 GAAGATACCAGATTTGGCATC
109016656 TCTGTATTGG
Statistics
Matches: 87, Mismatches: 14, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
86 1 0.01
87 20 0.23
88 57 0.66
89 8 0.09
90 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (89 bp):
GAAGATACCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAACAGATATGACATT
CTTGTGATTACAAAGAAGCAGATC
Found at i:109017001 original size:206 final size:207
Alignment explanation
Indices: 109016670--109017096 Score: 689
Period size: 206 Copynumber: 2.1 Consensus size: 207
109016660 TATTGGCGGA
* * * * * *
109016670 GAGCAGATCGAAA-ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGA
1 GAGCAAATC-AAAGACATAGCTAATTTAGCTTTCACGTGCTTACGATAAAGCAAATCTAAGATGA
* *
109016734 TTTGGCATTCTCTGTGTTGTCAGAGAACAAATCGAAGTCTGGCATCTCCATTTCAATGGAGAGCA
65 TTTGGCAGTCTCTGTGTTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGCA
*
109016799 GATACATAGCAGATCTCACCTTCAGACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCC
130 GATACATAGCAGATCTCACCTTCAGACGATTACACTGAAGCAAGATCCAAGATGATTTGGCATCC
109016864 TTGTGCTTACAAG
195 TTGTGCTTACAAG
109016877 GAGCAAATCAAAGACATAGCTAATTTAGCTTTCACGTGCTTACGATAAAGCAAATCTAAGATGAT
1 GAGCAAATCAAAGACATAGCTAATTTAGCTTTCACGTGCTTACGATAAAGCAAATCTAAGATGAT
*
109016942 TTGTC-GTCTCTGTAG-TGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGCA
66 TTGGCAGTCTCTGT-GTTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGCA
* *
109017005 GATACATAGCAGATCTGACCTTCAGACGATTACACTGAAGCAAGATCCAAGATGATTTGGCATTC
130 GATACATAGCAGATCTCACCTTCAGACGATTACACTGAAGCAAGATCCAAGATGATTTGGCATCC
109017070 TTGTGCTTACAAG
195 TTGTGCTTACAAG
* *
109017083 GAACAAATCGAAGA
1 GAGCAAATCAAAGA
109017097 GGCAGATTTG
Statistics
Matches: 204, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
206 144 0.71
207 60 0.29
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (207 bp):
GAGCAAATCAAAGACATAGCTAATTTAGCTTTCACGTGCTTACGATAAAGCAAATCTAAGATGAT
TTGGCAGTCTCTGTGTTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGCAG
ATACATAGCAGATCTCACCTTCAGACGATTACACTGAAGCAAGATCCAAGATGATTTGGCATCCT
TGTGCTTACAAG
Found at i:109018817 original size:18 final size:17
Alignment explanation
Indices: 109018793--109018833 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
109018783 TTTTATACCA
*
109018793 TATTATACAATTATT-T
1 TATTATATAATTATTGT
109018809 TATTATAT-ATTATTGT
1 TATTATATAATTATTGT
109018825 TATTATATA
1 TATTATATA
109018834 TTACTTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (17 bp):
TATTATATAATTATTGT
Found at i:109028824 original size:13 final size:13
Alignment explanation
Indices: 109028804--109028837 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
109028794 AAAAAATAAA
109028804 ATAAAATATAATTT
1 ATAAAATAT-ATTT
109028818 A-AAAATATATTT
1 ATAAAATATATTT
109028830 ATAAAATA
1 ATAAAATA
109028838 AACCTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.26
13 13 0.68
14 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATAAAATATATTT
Found at i:109028837 original size:26 final size:25
Alignment explanation
Indices: 109028804--109028854 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
109028794 AAAAAATAAA
109028804 ATAAAATATAA-TTTAAAAATATATTT
1 ATAAAATA-AACTTT-AAAATATATTT
109028830 ATAAAATAAACCTTTAAAATATATT
1 ATAAAATAAA-CTTTAAAATATATT
109028855 ATCAGGTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 18 0.78
27 3 0.13
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (25 bp):
ATAAAATAAACTTTAAAATATATTT
Found at i:109029069 original size:44 final size:44
Alignment explanation
Indices: 109029006--109029099 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
109028996 TGTTTTTTAT
* *
109029006 AATTTTAATATTTAAATTATCATTCTATTATTCGGTTTAGTCCA
1 AATTTTAATATTTAAATTATCATTCTATTACTCAGTTTAGTCCA
* ** *
109029050 AATTTTTATATTTAAATTATTTTTCTATTACTCAGTTTAGTTCA
1 AATTTTAATATTTAAATTATCATTCTATTACTCAGTTTAGTCCA
109029094 ATATTT
1 A-ATTT
109029100 GTGATGGTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 39 0.91
45 4 0.09
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (44 bp):
AATTTTAATATTTAAATTATCATTCTATTACTCAGTTTAGTCCA
Found at i:109029297 original size:1 final size:1
Alignment explanation
Indices: 109029291--109029317 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
109029281 GTGGAGATTG
109029291 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
109029318 GGGGTGGTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:109034097 original size:23 final size:24
Alignment explanation
Indices: 109034046--109034097 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
109034036 ATTTTAAAAA
*
109034046 CAAAATTAAATATTATATAATATT
1 CAAAATTAAAAATTATATAATATT
*
109034070 TAAAATATAAAAATTA-AT-ATATT
1 CAAAAT-TAAAAATTATATAATATT
109034093 CAAAA
1 CAAAA
109034098 AAATAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 9 0.38
24 7 0.29
25 8 0.33
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (24 bp):
CAAAATTAAAAATTATATAATATT
Found at i:109034132 original size:9 final size:9
Alignment explanation
Indices: 109034110--109034139 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
109034100 ATAATTATCC
109034110 AAAATTTT-
1 AAAATTTTA
109034118 AAAATTTTA
1 AAAATTTTA
109034127 AAAATTTTA
1 AAAATTTTA
109034136 AAAA
1 AAAA
109034140 GTTCCTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AAAATTTTA
Found at i:109040980 original size:9 final size:9
Alignment explanation
Indices: 109040963--109041026 Score: 58
Period size: 9 Copynumber: 6.8 Consensus size: 9
109040953 TAAAAAATAA
109040963 AAAATATTTT
1 AAAA-ATTTT
*
109040973 TAAAA-TTT
1 AAAAATTTT
*
109040981 AAAAATATT
1 AAAAATTTT
*
109040990 AAAAATTATA
1 AAAAATT-TT
109041000 AAAATATTTTT
1 AAAA-A-TTTT
109041011 AAAAATTTT
1 AAAAATTTT
109041020 AAAAATT
1 AAAAATT
109041027 AATTAAATAC
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
8 7 0.16
9 20 0.45
10 9 0.20
11 6 0.14
12 2 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AAAAATTTT
Found at i:109040980 original size:37 final size:38
Alignment explanation
Indices: 109040951--109041025 Score: 118
Period size: 37 Copynumber: 2.0 Consensus size: 38
109040941 TTTTTTTTAA
109040951 ATTAAAAAATA-AAAAATATTTTTAAAA-TTTAAAAAT
1 ATTAAAAAATATAAAAATATTTTTAAAATTTTAAAAAT
*
109040987 ATTAAAAATTATAAAAATATTTTTAAAAATTTTAAAAAT
1 ATTAAAAAATATAAAAATATTTTT-AAAATTTTAAAAAT
109041026 TAATTAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
36 10 0.29
37 12 0.34
38 4 0.11
39 9 0.26
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (38 bp):
ATTAAAAAATATAAAAATATTTTTAAAATTTTAAAAAT
Found at i:109040993 original size:16 final size:18
Alignment explanation
Indices: 109040951--109041007 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 18
109040941 TTTTTTTTAA
*
109040951 ATTAAAAAATA-AAAAAT
1 ATTAAAAATTATAAAAAT
*
109040968 ATTTTTAAAATT-TAAAAAT
1 A--TTAAAAATTATAAAAAT
109040987 ATTAAAAATTATAAAAAT
1 ATTAAAAATTATAAAAAT
109041005 ATT
1 ATT
109041008 TTTAAAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 9 0.27
18 10 0.30
19 14 0.42
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATTAAAAATTATAAAAAT
Found at i:109047093 original size:19 final size:19
Alignment explanation
Indices: 109047069--109047107 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
109047059 AATATACTAG
109047069 TGATAGAGAAAAGATTATA
1 TGATAGAGAAAAGATTATA
109047088 TGATAGAGAAAAGATTATA
1 TGATAGAGAAAAGATTATA
109047107 T
1 T
109047108 AAAATTGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (19 bp):
TGATAGAGAAAAGATTATA
Found at i:109047977 original size:62 final size:62
Alignment explanation
Indices: 109047880--109048003 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
109047870 AAGCTTCTTG
109047880 CTCTTTTGCTCTCTGTCTTGTTATCTTCTTTTGCTACTGTCAAAACCCCAACAAAATCAATC
1 CTCTTTTGCTCTCTGTCTTGTTATCTTCTTTTGCTACTGTCAAAACCCCAACAAAATCAATC
*
109047942 CTCTTTTGTTCTCTGTCTTGTTATCTTCTTTTGCTACTGTCAAAACCCCAACAAAATCAATC
1 CTCTTTTGCTCTCTGTCTTGTTATCTTCTTTTGCTACTGTCAAAACCCCAACAAAATCAATC
109048004 ATACTGTGCA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.23, C:0.28, G:0.08, T:0.41
Consensus pattern (62 bp):
CTCTTTTGCTCTCTGTCTTGTTATCTTCTTTTGCTACTGTCAAAACCCCAACAAAATCAATC
Found at i:109052212 original size:27 final size:28
Alignment explanation
Indices: 109052164--109052218 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
109052154 GCGTTTTTGG
* *
109052164 GAAAAAAATAAAATATTATAAAAATCAT
1 GAAAAAAATAAAAAAATATAAAAATCAT
* *
109052192 GAAAAATATAAAAAAAT-TAAAATTCAT
1 GAAAAAAATAAAAAAATATAAAAATCAT
109052219 TATCAAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (28 bp):
GAAAAAAATAAAAAAATATAAAAATCAT
Found at i:109052302 original size:19 final size:21
Alignment explanation
Indices: 109052261--109052308 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
109052251 TTAAAATTTT
109052261 AACTAAAAATATTAAAATAAA
1 AACTAAAAATATTAAAATAAA
* *
109052282 AA-TAAAAAT-TTATAATCAA
1 AACTAAAAATATTAAAATAAA
109052301 AACTAAAA
1 AACTAAAA
109052309 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (21 bp):
AACTAAAAATATTAAAATAAA
Found at i:109054164 original size:6 final size:6
Alignment explanation
Indices: 109054155--109054191 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
109054145 TTTCAAAACC
* *
109054155 AAAGGG AAAGGG AAAGGG AAAGGG GAAGGG GAAGGG A
1 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG A
109054192 TCGTATGGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (6 bp):
AAAGGG
Found at i:109054470 original size:19 final size:20
Alignment explanation
Indices: 109054445--109054489 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
109054435 TTTATATTTC
109054445 ATTTTTATTTA-TTATCAAT
1 ATTTTTATTTATTTATCAAT
*
109054464 GTTTTTATTTATTTATCAAT
1 ATTTTTATTTATTTATCAAT
109054484 ATTTTT
1 ATTTTT
109054490 TTAAAATCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (20 bp):
ATTTTTATTTATTTATCAAT
Found at i:109055127 original size:45 final size:48
Alignment explanation
Indices: 109055063--109055166 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 48
109055053 TCCATATGAT
* * *
109055063 GTTTTTGGGGTTTAGGGTTTTAGGA-AT-TATAGATTAGTGTTTA-GG
1 GTTTTTTGGGTTTAGGGTTTTAGGAGATATATAGACTAGTGTCTATGG
*
109055108 GTTTTTTGGGTTTAGGGTTTTAGGAGTTATATAGACTAGTGTCTATGG
1 GTTTTTTGGGTTTAGGGTTTTAGGAGATATATAGACTAGTGTCTATGG
*
109055156 TTTTTTTGGGT
1 GTTTTTTGGGT
109055167 GTTTAAGGAT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
45 24 0.47
46 1 0.02
47 14 0.27
48 12 0.24
ACGTcount: A:0.17, C:0.02, G:0.32, T:0.49
Consensus pattern (48 bp):
GTTTTTTGGGTTTAGGGTTTTAGGAGATATATAGACTAGTGTCTATGG
Found at i:109055305 original size:41 final size:41
Alignment explanation
Indices: 109055193--109055424 Score: 260
Period size: 41 Copynumber: 5.8 Consensus size: 41
109055183 GTTATATGAC
* * * *
109055193 TTTTAGCGGCGCTCTGCCAAAAACGCCGCTATTGTTCTATT
1 TTTTAGCGGCGCTTTGCAAAAAACGCCGCTATTGCTCTGTT
* * * *
109055234 TTTTA---GCGCTTTGCTAAAAATGCTGTTATTGCTCTGTT
1 TTTTAGCGGCGCTTTGCAAAAAACGCCGCTATTGCTCTGTT
* * *
109055272 TTTTAGCGGCGCTTCGCAAAAAACACCGCTATTGCTCT-AT
1 TTTTAGCGGCGCTTTGCAAAAAACGCCGCTATTGCTCTGTT
109055312 TTTTAGCGGCGCTTTGTC-AAAAACGCCGCTATTGCTCTGTT
1 TTTTAGCGGCGCTTTG-CAAAAAACGCCGCTATTGCTCTGTT
* *
109055353 TTTTAGCGGCGCTTTGCCAAAAAAAGCCGCTATTGCTATG-T
1 TTTTAGCGGCGCTTTG-CAAAAAACGCCGCTATTGCTCTGTT
* * *
109055394 TTTTAGCGGGGTTTTGCCAAAAACGCCGCTA
1 TTTTAGCGGCGCTTTGCAAAAAACGCCGCTA
109055425 ATGTATAATT
Statistics
Matches: 161, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
38 31 0.19
40 48 0.30
41 63 0.39
42 19 0.12
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGCTTTGCAAAAAACGCCGCTATTGCTCTGTT
Found at i:109055437 original size:82 final size:81
Alignment explanation
Indices: 109055193--109055437 Score: 225
Period size: 81 Copynumber: 3.0 Consensus size: 81
109055183 GTTATATGAC
* * *
109055193 TTTTAGCGGCGC-TCTGCCAAAAACGCCGCTATTGTTCTAT-TTTTTA---GCGCTTTGCTAAAA
1 TTTTAGCGGCGCTTC-GCAAAAAACACCGCTATTG--CTATATTTTTAGCGGCGCTTTGCCAAAA
* * * * * *
109055253 ATGCTGTTATTGCTCTGTT
63 ACGCCGCTAATGCTATATT
* *
109055272 TTTTAGCGGCGCTTCGCAAAAAACACCGCTATTGCTCTATTTTTAGCGGCGCTTTGTCAAAAACG
1 TTTTAGCGGCGCTTCGCAAAAAACACCGCTATTGCTATATTTTTAGCGGCGCTTTGCCAAAAACG
* * *
109055337 CCGCTATTGCTCTGTT
66 CCGCTAATGCTATATT
* * * *
109055353 TTTTAGCGGCGCTTTGCCAAAAAA-AGCCGCTATTGCTATGTTTTTAGCGGGGTTTTGCCAAAAA
1 TTTTAGCGGCGCTTCG-CAAAAAACA-CCGCTATTGCTATATTTTTAGCGGCGCTTTGCCAAAAA
*
109055417 CGCCGCTAATG-TATAAT
64 CGCCGCTAATGCTATATT
109055434 TTTT
1 TTTT
109055438 GTGGCGTTTT
Statistics
Matches: 141, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
77 3 0.02
78 6 0.04
79 29 0.21
80 2 0.01
81 51 0.36
82 50 0.35
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (81 bp):
TTTTAGCGGCGCTTCGCAAAAAACACCGCTATTGCTATATTTTTAGCGGCGCTTTGCCAAAAACG
CCGCTAATGCTATATT
Found at i:109059155 original size:16 final size:16
Alignment explanation
Indices: 109059136--109059176 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
109059126 TAAAAATAAT
*
109059136 TTAAAATATAAATTTA
1 TTAATATATAAATTTA
*
109059152 TTAATATATATATTTA
1 TTAATATATAAATTTA
109059168 TTAATATAT
1 TTAATATAT
109059177 GTAAATACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TTAATATATAAATTTA
Found at i:109059281 original size:19 final size:19
Alignment explanation
Indices: 109059257--109059294 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
109059247 CATCTAAACA
*
109059257 CCAGAAAAGTAAATTATTT
1 CCAGAAAAGTAAATCATTT
109059276 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
109059295 TTTAAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:109060578 original size:39 final size:41
Alignment explanation
Indices: 109060498--109060590 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
109060488 TAATTAATTT
*
109060498 TTTAAAATTTTAAAAAATAAAAAAAAATATATTTTAAAAAA
1 TTTAAAATATTAAAAAATAAAAAAAAATATATTTTAAAAAA
* * *
109060539 TTTAAAATATTAAAAATTATAAAAAAATAT-TTTT-TAAAA
1 TTTAAAATATTAAAAAATAAAAAAAAATATATTTTAAAAAA
*
109060578 TTTAAAAAATTAA
1 TTTAAAATATTAA
109060591 TTAAATACTG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 16 0.34
40 4 0.09
41 27 0.57
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (41 bp):
TTTAAAATATTAAAAAATAAAAAAAAATATATTTTAAAAAA
Found at i:109065691 original size:39 final size:39
Alignment explanation
Indices: 109065636--109065717 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
109065626 CAAGGAAAAT
*
109065636 GTTTGATATTACTATGCCTGGAAGTGAAATCCCAGAATG
1 GTTTGATATTACTATGCCCGGAAGTGAAATCCCAGAATG
* * *
109065675 GTTTGATATTATTATGCCCGGAAGTGGAATCTCAGAATG
1 GTTTGATATTACTATGCCCGGAAGTGAAATCCCAGAATG
109065714 GTTT
1 GTTT
109065718 AGCCAACAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.34
Consensus pattern (39 bp):
GTTTGATATTACTATGCCCGGAAGTGAAATCCCAGAATG
Found at i:109082324 original size:30 final size:30
Alignment explanation
Indices: 109082289--109082367 Score: 122
Period size: 30 Copynumber: 2.6 Consensus size: 30
109082279 ACTGACCCCG
*
109082289 ACCGAATTAATTCGGTTAATCAACCGATTA
1 ACCGAATTAAGTCGGTTAATCAACCGATTA
*
109082319 ACCGAATTTAGTCGGTTAATCAACCGATTA
1 ACCGAATTAAGTCGGTTAATCAACCGATTA
**
109082349 ACCGAATTCGGTCGGTTAA
1 ACCGAATTAAGTCGGTTAA
109082368 CCGAATTAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (30 bp):
ACCGAATTAAGTCGGTTAATCAACCGATTA
Found at i:109082522 original size:22 final size:22
Alignment explanation
Indices: 109082497--109082538 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
109082487 TGATAATTTA
* *
109082497 TTTTCAAAAAATATAAAAATAT
1 TTTTAAAAAAAAATAAAAATAT
*
109082519 TTTTAAAAAAAAATTAAAAT
1 TTTTAAAAAAAAATAAAAAT
109082539 TAAAAAACGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
TTTTAAAAAAAAATAAAAATAT
Found at i:109084163 original size:40 final size:40
Alignment explanation
Indices: 109084117--109084196 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
109084107 TCTAAATGTG
109084117 TTATGAGTTCTAATATCTAATAAGTGTATTTTCTAAGGTT
1 TTATGAGTTCTAATATCTAATAAGTGTATTTTCTAAGGTT
* *
109084157 TTATGAGTTCTAATATCTAATGAGTGTATTTTTTAAGGTT
1 TTATGAGTTCTAATATCTAATAAGTGTATTTTCTAAGGTT
109084197 GTAAAAGAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.29, C:0.06, G:0.16, T:0.49
Consensus pattern (40 bp):
TTATGAGTTCTAATATCTAATAAGTGTATTTTCTAAGGTT
Found at i:109093914 original size:24 final size:24
Alignment explanation
Indices: 109093887--109093941 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
109093877 TATAACTTAT
*
109093887 TTATTTTTAAAAACTA-TACATATA
1 TTATTATTAAAAA-TACTACATATA
*
109093911 TTATTATTAAAAATACTACTTATA
1 TTATTATTAAAAATACTACATATA
*
109093935 TTTTTAT
1 TTATTAT
109093942 CGCATATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (24 bp):
TTATTATTAAAAATACTACATATA
Found at i:109094101 original size:30 final size:33
Alignment explanation
Indices: 109094044--109094104 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
109094034 GTTATTTATA
109094044 TTATTATTATTTTACATTATTATTTATATATGG
1 TTATTATTATTTTACATTATTATTTATATATGG
109094077 TTATTA-TATTTTTAC-TTA-TA-TTATATAT
1 TTATTATTA-TTTTACATTATTATTTATATAT
109094105 TAAATATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
30 8 0.30
31 2 0.07
32 5 0.19
33 12 0.44
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (33 bp):
TTATTATTATTTTACATTATTATTTATATATGG
Found at i:109094183 original size:21 final size:20
Alignment explanation
Indices: 109094140--109094200 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
109094130 TTATTTTTAC
*
109094140 ATACATATTATATATTATTTT
1 ATAC-TATTATATATTTTTTT
* *
109094161 ATATTATTATGTCATTTTTTT
1 ATACTATTATAT-ATTTTTTT
109094182 ATACTATTATATATTTTTT
1 ATACTATTATATATTTTTT
109094201 ATCTATATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 14 0.41
21 20 0.59
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (20 bp):
ATACTATTATATATTTTTTT
Found at i:109094214 original size:18 final size:19
Alignment explanation
Indices: 109094154--109094214 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
109094144 ATATTATATA
*
109094154 TTATTTTATAT-TATTATG
1 TTATTTTTTATCTATTATG
*
109094172 TCATTTTTTTATACTATTAT-
1 TTA-TTTTTTAT-CTATTATG
*
109094192 ATATTTTTTATCTA-TATG
1 TTATTTTTTATCTATTATG
109094210 TTATT
1 TTATT
109094215 ATCATTAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
17 3 0.09
18 9 0.26
19 15 0.44
20 1 0.03
21 6 0.18
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (19 bp):
TTATTTTTTATCTATTATG
Found at i:109094277 original size:23 final size:25
Alignment explanation
Indices: 109094236--109094284 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
109094226 TTTTAACTTG
* *
109094236 TATTATATACTTATCTTTATTTATA
1 TATTATATAATTATCTTTATTCATA
109094261 TATTA-ATAATTA-CTTTATTCATA
1 TATTATATAATTATCTTTATTCATA
109094284 T
1 T
109094285 TCTATTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 11 0.50
24 6 0.27
25 5 0.23
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (25 bp):
TATTATATAATTATCTTTATTCATA
Found at i:109099750 original size:13 final size:13
Alignment explanation
Indices: 109099732--109099807 Score: 75
Period size: 13 Copynumber: 5.8 Consensus size: 13
109099722 CTATTTCAAG
*
109099732 AAAAAGAAAGGAA
1 AAAAAGAAAAGAA
109099745 AAAAAGAAAAGAA
1 AAAAAGAAAAGAA
*
109099758 AAAGAGAAAA-AA
1 AAAAAGAAAAGAA
* *
109099770 ATAAAATAAAATAA
1 A-AAAAGAAAAGAA
109099784 AAATAA-AAAAGAGA
1 AAA-AAGAAAAGA-A
109099798 AAAAAGAAAA
1 AAAAAGAAAA
109099808 AATGGAGAGG
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
12 3 0.06
13 37 0.70
14 13 0.25
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (13 bp):
AAAAAGAAAAGAA
Found at i:109099775 original size:16 final size:16
Alignment explanation
Indices: 109099751--109099802 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
109099741 GGAAAAAAAG
*
109099751 AAAAGAAAAAGAGAAA
1 AAAATAAAAAGAGAAA
109099767 AAAATAAAATA-A-AATA
1 AAAATAAAA-AGAGAA-A
109099783 AAAATAAAAAAGAGAAA
1 AAAAT-AAAAAGAGAAA
109099800 AAA
1 AAA
109099803 GAAAAAATGG
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
15 2 0.07
16 16 0.53
17 10 0.33
18 2 0.07
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.08
Consensus pattern (16 bp):
AAAATAAAAAGAGAAA
Found at i:109099807 original size:16 final size:16
Alignment explanation
Indices: 109099751--109099809 Score: 52
Period size: 16 Copynumber: 3.7 Consensus size: 16
109099741 GGAAAAAAAG
109099751 AAAAG-AAAAAGAGAA
1 AAAAGAAAAAAGAGAA
*
109099766 AAAA-ATAAAATA-AAATA
1 AAAAGA-AAAA-AGAGA-A
*
109099783 AAAATAAAAAAGAGAA
1 AAAAGAAAAAAGAGAA
109099799 AAAAGAAAAAA
1 AAAAGAAAAAA
109099810 TGGAGAGGCC
Statistics
Matches: 35, Mismatches: 3, Indels: 11
0.71 0.06 0.22
Matches are distributed among these distances:
15 4 0.11
16 18 0.51
17 12 0.34
18 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (16 bp):
AAAAGAAAAAAGAGAA
Found at i:109100891 original size:88 final size:87
Alignment explanation
Indices: 109100711--109101230 Score: 362
Period size: 88 Copynumber: 5.9 Consensus size: 87
109100701 ATTTGGCATC
* * * * * * *
109100711 CCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGAAG
1 CCTGTGTTTATAGGGAACAGATCGAAGATTGCAGAT-TGGCATCCCTGTGTTTATAGGGAA-CAG
** * * *
109100776 ATCGAAGATTTCGGCAT-GGA-ATC
64 ATCGAAGATAGCAG-ATCTGACATT
* * *
109100799 CCTGTGTTTATAGGGAACA-AGTTGAAGATTGCAGATTTGGCATCCTTATGTTTATAGGGAACAG
1 CCTGTGTTTATAGGGAACAGA-TCGAAGATTGCAGA-TTGGCATCCCTGTGTTTATAGGGAACAG
109100863 ATCGAAGATAGCAGATCTGACATT
64 ATCGAAGATAGCAGATCTGACATT
* * * * *
109100887 CCTGTGTTTACAGCGAAGTAGATCAAAGATTTCAGCA-TGGCATCCCTGTGTTTATAGGGAACA-
1 CCTGTGTTTATAGGGAA-CAGATCGAAGATTGCAG-ATTGGCATCCCTGTGTTTATAGGGAACAG
* * * *
109100950 AGTTGAAGATAGCAGATTTGGCATC
64 A-TCGAAGATAGCAGATCTGACATT
* ** * * * * ** *
109100975 CCTATGTTTATAGGGAACAGATCGAAGATAACAAATCTGACA-CTCCTGTGCTTACAGCAAAGTA
1 CCTGTGTTTATAGGGAACAGATCGAAGATTGCAGAT-TGGCATC-CCTGTGTTTATAGGGAA-CA
* ** *
109101039 GATCGAGGATTTCAG--CATGGCA-T
63 GATCGAAGATAGCAGATC-TGACATT
* *
109101062 CCATGTGTTTATAGGGAACAAGAT-GAAGATAGCAGATTTGGCATCCCTATGTTTATAGGGAACA
1 CC-TGTGTTTATAGGGAAC-AGATCGAAGATTGCAGA-TTGGCATCCCTGTGTTTATAGGGAACA
* *
109101126 GATCGAAGATAACAGATCTGACACT
63 GATCGAAGATAGCAGATCTGACATT
* * * * *
109101151 CATGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA-TGGCATCCCTGTGTTTATAGGGAAC-G
1 CCTGTGTTTATAGGGAA-CAGATCGAAGATTGCAG-ATTGGCATCCCTGTGTTTATAGGGAACAG
*
109101214 AGTTGAAGATAGCAGAT
64 A-TCGAAGATAGCAGAT
109101231 TTGGCATCTT
Statistics
Matches: 337, Mismatches: 70, Indels: 50
0.74 0.15 0.11
Matches are distributed among these distances:
86 3 0.01
87 47 0.14
88 242 0.72
89 41 0.12
90 4 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.27
Consensus pattern (87 bp):
CCTGTGTTTATAGGGAACAGATCGAAGATTGCAGATTGGCATCCCTGTGTTTATAGGGAACAGAT
CGAAGATAGCAGATCTGACATT
Found at i:109100936 original size:132 final size:132
Alignment explanation
Indices: 109100699--109101238 Score: 900
Period size: 132 Copynumber: 4.1 Consensus size: 132
109100689 CAAAGAAACA
* * *
109100699 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
* * * *
109100764 ACAGCGAAGAAGATCGAAGATTTCGGCATGGAATCCCTGTGTTTATAGGGAACAAGTTGAAGATT
66 ACAGCGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
109100829 GC
131 GC
* * * *
109100831 AGATTTGGCATCCTTATGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGTTT
1 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
*
109100896 ACAGCGAAGTAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
109100961 GC
131 GC
*
109100963 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAAATCTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
* * * *
109101028 ACAGCAAAGTAGATCGAGGATTTCAGCATGGCATCCATGTGTTTATAGGGAACAAGATGAAGATA
66 ACAGCGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
109101093 GC
131 GC
*
109101095 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCATGTGCTT
1 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
* *
109101160 ACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACGAGTTGAAGATA
66 ACAGCGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
109101225 GC
131 GC
109101227 AGATTTGGCATC
1 AGATTTGGCATC
109101239 TTTGTATTGT
Statistics
Matches: 382, Mismatches: 26, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 382 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTCCTGTGCTT
ACAGCGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:109101267 original size:44 final size:45
Alignment explanation
Indices: 109101219--109101325 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 45
109101209 GAACGAGTTG
* *
109101219 AAGATAGCAGATTTGGCATCTTTGTATTGTCAGAGAGCAGATC-A
1 AAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAA
* * *
109101263 AAGATACCGGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAA
1 AAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC-AA
* *
109101309 AACATAGCTGATTTGGC
1 AAGATAGCAGATTTGGC
109101326 TTTCACGTGT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 38 0.72
46 15 0.28
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (45 bp):
AAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAA
Found at i:109101626 original size:205 final size:204
Alignment explanation
Indices: 109101303--109101921 Score: 1001
Period size: 205 Copynumber: 3.0 Consensus size: 204
109101293 CGGAGAGCAG
109101303 ATCGAAAACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAAACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
109101368 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGG-ATCTCCACTTCGACGGAGGGCAGACACATA
109101433 GCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
130 GCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
*
109101498 CAAGGAGCAA
195 CAAGGAACAA
** * * *
109101508 ATCGAAGCCATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAACAAATTTAAGATGATTTGGCA
1 ATCGAAAACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
109101573 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGAATCTCCACTTCGACGGAGGGCAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGG-ATCTCCACTTCGACGGAGGGCAGACACATA
109101638 GCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
130 GCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
109101703 CAAGGAACAA
195 CAAGGAACAA
*
109101713 ATCGAAAACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAAACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
** * * * * * *
109101778 TCTCTGTATTGTCAGAGAATGAATCAAAGTCTGGTTCTTCACTTTGA-GGAAGAGCAGATACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGATCTCCACTTCGACGG-AGGGCAGACACATA
* * * * *
109101842 GCAGATCTC-ACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTACCCTGGTGCTT
130 GCAGATC-CAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTT
109101906 ACAAGGAAC-A
194 ACAAGGAACAA
109101916 ATCGAA
1 ATCGAA
109101922 GAAGCAAATT
Statistics
Matches: 386, Mismatches: 26, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
203 9 0.02
204 88 0.23
205 289 0.75
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (204 bp):
ATCGAAAACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGATCTCCACTTCGACGGAGGGCAGACACATAG
CAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTAC
AAGGAACAA
Found at i:109103584 original size:24 final size:24
Alignment explanation
Indices: 109103526--109103591 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
109103516 TTTATTTTAT
*
109103526 ATATAACTTAT-TTATTTTTAAAAG
1 ATAT-ACTTATATTATTATTAAAAG
* *
109103550 CTATACATATATTATTATTAAAA-
1 ATATACTTATATTATTATTAAAAG
*
109103573 ATACTACTTATATTTTTAT
1 ATA-TACTTATATTATTAT
109103592 CGTATATTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 7 0.21
24 27 0.79
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.50
Consensus pattern (24 bp):
ATATACTTATATTATTATTAAAAG
Found at i:109103704 original size:16 final size:16
Alignment explanation
Indices: 109103685--109103718 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
109103675 TAACAATATG
*
109103685 TTATTTTATATTATTA
1 TTATTTTACATTATTA
109103701 TTATTTTACATTATTA
1 TTATTTTACATTATTA
109103717 TT
1 TT
109103719 TATATATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATTTTACATTATTA
Found at i:109103752 original size:30 final size:33
Alignment explanation
Indices: 109103695--109103755 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
109103685 TTATTTTATA
109103695 TTATTATTATTTTACATTATTATTTATATATGG
1 TTATTATTATTTTACATTATTATTTATATATGG
109103728 TTATTA-TATTTTTAC-TTA-TA-TTATATAT
1 TTATTATTA-TTTTACATTATTATTTATATAT
109103756 TAAATATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
30 8 0.30
31 2 0.07
32 5 0.19
33 12 0.44
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (33 bp):
TTATTATTATTTTACATTATTATTTATATATGG
Found at i:109103814 original size:10 final size:10
Alignment explanation
Indices: 109103796--109103852 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
109103786 TTTACATACA
109103796 TATTATATAT
1 TATTATATAT
*
109103806 TATTTTATAT
1 TATTATATAT
*
109103816 TATTATGTCAT
1 TATTATAT-AT
* * *
109103827 TTTTTTATAC
1 TATTATATAT
109103837 TATTATATAT
1 TATTATATAT
*
109103847 TTTTAT
1 TATTAT
109103853 CTATATGTTA
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
10 28 0.80
11 7 0.20
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (10 bp):
TATTATATAT
Found at i:109103834 original size:21 final size:20
Alignment explanation
Indices: 109103791--109103850 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
109103781 TTATTTTTAC
*
109103791 ATACATATTATATATTATTTT
1 ATAC-TATTATATATTTTTTT
* *
109103812 ATATTATTATGTCATTTTTTT
1 ATACTATTATAT-ATTTTTTT
109103833 ATACTATTATATATTTTT
1 ATACTATTATATATTTTT
109103851 ATCTATATGT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
20 13 0.39
21 20 0.61
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (20 bp):
ATACTATTATATATTTTTTT
Found at i:109103927 original size:23 final size:25
Alignment explanation
Indices: 109103886--109103934 Score: 75
Period size: 23 Copynumber: 2.0 Consensus size: 25
109103876 ATTTAACTTG
*
109103886 TATTATATACTTATCTTTATTTATA
1 TATTATATAATTATCTTTATTTATA
109103911 TATTA-ATAATTA-CTTTATTTATA
1 TATTATATAATTATCTTTATTTATA
109103934 T
1 T
109103935 TCTATTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.52
24 6 0.26
25 5 0.22
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (25 bp):
TATTATATAATTATCTTTATTTATA
Found at i:109106887 original size:37 final size:37
Alignment explanation
Indices: 109106844--109106917 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
109106834 GTCCACAATC
109106844 ACATAGACTTTATTTTTGAAAATGAGAGAATAACCTT
1 ACATAGACTTTATTTTTGAAAATGAGAGAATAACCTT
109106881 ACATAGACTTTATTTTTGAAAATGAGAGAATAACCTT
1 ACATAGACTTTATTTTTGAAAATGAGAGAATAACCTT
109106918 TCACTATAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.35
Consensus pattern (37 bp):
ACATAGACTTTATTTTTGAAAATGAGAGAATAACCTT
Found at i:109109385 original size:30 final size:30
Alignment explanation
Indices: 109109344--109109411 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
109109334 TATTATGTTG
*
109109344 TTATTGGTTGAATATTATATAACTCTTATT
1 TTATTGTTTGAATATTATATAACTCTTATT
*
109109374 TTATTGTTTGAATATTGTATAACTCTTATT
1 TTATTGTTTGAATATTATATAACTCTTATT
109109404 TTATTGTT
1 TTATTGTT
109109412 AATTTTGTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.26, C:0.06, G:0.10, T:0.57
Consensus pattern (30 bp):
TTATTGTTTGAATATTATATAACTCTTATT
Found at i:109110482 original size:23 final size:24
Alignment explanation
Indices: 109110434--109110487 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
109110424 GTTAAATATG
* *
109110434 TTAAAAATATTTTAATTATCATTT
1 TTAAAAATATTCTAATTATAATTT
109110458 TTAAAAATA-TCT-ATTATAATCTT
1 TTAAAAATATTCTAATTATAAT-TT
109110481 TTAAAAA
1 TTAAAAA
109110488 AAATTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 7 0.26
23 11 0.41
24 9 0.33
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (24 bp):
TTAAAAATATTCTAATTATAATTT
Found at i:109110482 original size:24 final size:24
Alignment explanation
Indices: 109110434--109110494 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
109110424 GTTAAATATG
*
109110434 TTAAAAATATTTTAATTATCATTT
1 TTAAAAATATTTTAATAATCATTT
109110458 TTAAAAATATCTATT-ATAATC-TTT
1 TTAAAAATAT-T-TTAATAATCATTT
* *
109110482 TAAAAAAAATTTT
1 TTAAAAATATTTT
109110495 TTTTTTTGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
22 2 0.06
23 1 0.03
24 21 0.66
25 6 0.19
26 2 0.06
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (24 bp):
TTAAAAATATTTTAATAATCATTT
Found at i:109113167 original size:14 final size:15
Alignment explanation
Indices: 109113148--109113178 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
109113138 CAAGAAATGG
109113148 GAAGAAAAAT-TGTT
1 GAAGAAAAATGTGTT
109113162 GAAGAAAAATGTGTT
1 GAAGAAAAATGTGTT
109113177 GA
1 GA
109113179 TAAACCTGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (15 bp):
GAAGAAAAATGTGTT
Found at i:109116470 original size:31 final size:31
Alignment explanation
Indices: 109116435--109116494 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
109116425 CTTAAGGTAA
109116435 TATCTTCACCAAATTTTGAACACATCCACTC
1 TATCTTCACCAAATTTTGAACACATCCACTC
109116466 TATCTTCACCAAATTTTGAACACATCCAC
1 TATCTTCACCAAATTTTGAACACATCCAC
109116495 CAACAAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.33, C:0.32, G:0.03, T:0.32
Consensus pattern (31 bp):
TATCTTCACCAAATTTTGAACACATCCACTC
Found at i:109120824 original size:25 final size:25
Alignment explanation
Indices: 109120795--109120874 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
109120785 TTTTTTATAA
*
109120795 ACTTTAAGTTAAGAATTCTATTAGG
1 ACTTTAAATTAAGAATTCTATTAGG
*
109120820 ACTTTAAATTAAGAATTCTATTTGG
1 ACTTTAAATTAAGAATTCTATTAGG
* **
109120845 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAAGAATTCTATTAGG
109120870 ACTTT
1 ACTTT
109120875 CCCTTTGTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.41
Consensus pattern (25 bp):
ACTTTAAATTAAGAATTCTATTAGG
Found at i:109125418 original size:25 final size:25
Alignment explanation
Indices: 109125389--109125468 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
109125379 TTTTTTATAA
109125389 ACTTTAAATTAAGAATTCTATTAGG
1 ACTTTAAATTAAGAATTCTATTAGG
* *
109125414 ACTTTAAATTAAAAATTCTATTTGG
1 ACTTTAAATTAAGAATTCTATTAGG
* **
109125439 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAAGAATTCTATTAGG
109125464 ACTTT
1 ACTTT
109125469 CCCTTTGTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.41
Consensus pattern (25 bp):
ACTTTAAATTAAGAATTCTATTAGG
Found at i:109126119 original size:150 final size:152
Alignment explanation
Indices: 109125677--109126189 Score: 701
Period size: 153 Copynumber: 3.4 Consensus size: 152
109125667 ATTCCACGTC
* * *
109125677 ATATTTCTGGTCTATCCTCTTTGTGGCATCCTGATCTTAGTGGTAACAATTTCATCAGCATACCT
1 ATATTTCTGATCTATCCTC-TTGAGGCATCTTGATCTTAGTGGTAACAATTTCATCAGCATACCT
* *
109125742 GCATCTCTTACTCGACTCTAAAAGCTTGGAA-ATCTTATATTGTCAAATTGCAACATATGCACTC
65 GCATCTCTTACTCGACTCTCAAAGCTT-GAATATCTTATATTGTCAAATTGCAACATGTGCACTC
109125806 TTGGTGAAGCAGATAATCATAGTG
129 TTGGTGAAGCAGATAATCATAGTG
* * *
109125830 ATATTTCTGATCTATCCTCTTTGAGTCATCTCGATCTTAGTGGTAACAATTTCATAAGCATACCT
1 ATATTTCTGATCTATCCTC-TTGAGGCATCTTGATCTTAGTGGTAACAATTTCATCAGCATACCT
* ** *
109125895 GCATCTCTTACTCGACTCTCAAAGCTTAAAT-TGCTTGCATTATCAAATTGCAACATGTGCACTC
65 GCATCTCTTACTCGACTCTCAAAGCTTGAATAT-CTTATATTGTCAAATTGCAACATGTGCACTC
* * *
109125959 TTGGTAAAGCAGATACTCATAGTT
129 TTGGTGAAGCAGATAATCATAGTG
*
109125983 ATATTTCTGATCTATCCTC-TGAGGCATCTTGATCTTAGTGATAACAATTTCATCAGCATACCTG
1 ATATTTCTGATCTATCCTCTTGAGGCATCTTGATCTTAGTGGTAACAATTTCATCAGCATACCTG
* *
109126047 CAT-TCTTACTCGACTATCCAAGCTTGAATATCTTATATTGTCAAATTGCAACATGTGCACTCTT
66 CATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTGTCAAATTGCAACATGTGCACTCTT
* * *
109126111 AGTGAAGCAGATATTCATGGTG
131 GGTGAAGCAGATAATCATAGTG
* * ** * * *
109126133 ATATTTCTGGTATATCCTCTTTGATACGTCTTGATCTTAATGGTAAGAATTTCATCA
1 ATATTTCTGATCTATCCTC-TTGAGGCATCTTGATCTTAGTGGTAACAATTTCATCA
109126190 CCATTCCTTT
Statistics
Matches: 317, Mismatches: 38, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
150 87 0.27
151 45 0.14
152 33 0.10
153 152 0.48
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.37
Consensus pattern (152 bp):
ATATTTCTGATCTATCCTCTTGAGGCATCTTGATCTTAGTGGTAACAATTTCATCAGCATACCTG
CATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTGTCAAATTGCAACATGTGCACTCTT
GGTGAAGCAGATAATCATAGTG
Found at i:109128177 original size:41 final size:41
Alignment explanation
Indices: 109128057--109128180 Score: 155
Period size: 41 Copynumber: 3.0 Consensus size: 41
109128047 TTGTAAAACA
** *
109128057 CAGAGCAATAGC-G-GCATTTTACTAAAATCGCCGCTAAAA-A
1 CAGAGCAATAGCAGCGC-TTTTGGTAAAA-CGCCGCTAAAAGT
109128097 CAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGCTAAAAGT
* * *
109128138 CGGAGCACTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGCTAAAAGT
109128179 CA
1 CA
109128181 TATAACCCTT
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
40 23 0.31
41 49 0.66
42 2 0.03
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.19
Consensus pattern (41 bp):
CAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGCTAAAAGT
Found at i:109128264 original size:16 final size:17
Alignment explanation
Indices: 109128239--109128272 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
109128229 CTAAAACACT
*
109128239 AAACCTCTAAACCTTAA
1 AAACCTCTAAACCCTAA
109128256 AAACC-CTAAACCCTAA
1 AAACCTCTAAACCCTAA
109128272 A
1 A
109128273 TTATAACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (17 bp):
AAACCTCTAAACCCTAA
Found at i:109128464 original size:15 final size:15
Alignment explanation
Indices: 109128425--109128475 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
109128415 CGGTTTAATA
*
109128425 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* * *
109128439 TCTATGATTTAGGGT
1 TTTATGGTTTAAGGT
109128454 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
109128469 TTAATGG
1 TTTATGG
109128476 CCATGGGTAT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 10 0.36
15 18 0.64
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:109129267 original size:104 final size:102
Alignment explanation
Indices: 109129088--109129359 Score: 474
Period size: 104 Copynumber: 2.6 Consensus size: 102
109129078 CCTAATTTTT
*
109129088 TGTTAAAAATAAAAAAAATTAAAATTAAGCAATAGTGAC-TTTTTAGACAAAACACCACAAAAAT
1 TGTTAAAAATAAAAAAAATTAAAATTAAGCAATAGTGACGTTTTTAGACAAAACGCCACAAAAAT
109129152 ATGTTAAAAATTTTGAAAGAAAAAGAATAGAAAAAAATA
66 ATGTTAAAAATTTTGAAAGAAAAAGAATAG-AAAAAA-A
*
109129191 TGTTAAAAATAAAAAAAATTAAAATTAAGCAATAGTGGCGTTTTTAGACAAAACGCCACAAAAAT
1 TGTTAAAAATAAAAAAAATTAAAATTAAGCAATAGTGACGTTTTTAGACAAAACGCCACAAAAAT
109129256 ATGTTAAAAATTTTGAAAGAAAAAGAATAGAAAAAAA
66 ATGTTAAAAATTTTGAAAGAAAAAGAATAGAAAAAAA
*
109129293 TGTTAAAAATAAAAAAAAAATTAAAATTAAGCAATAGTGACGTTTTTAGACAAAAGGCCACAAAA
1 TGTTAAAAAT--AAAAAAAATTAAAATTAAGCAATAGTGACGTTTTTAGACAAAACGCCACAAAA
109129358 AT
64 AT
109129360 TTAAATGTGA
Statistics
Matches: 162, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
102 11 0.07
103 44 0.27
104 107 0.66
ACGTcount: A:0.57, C:0.07, G:0.11, T:0.24
Consensus pattern (102 bp):
TGTTAAAAATAAAAAAAATTAAAATTAAGCAATAGTGACGTTTTTAGACAAAACGCCACAAAAAT
ATGTTAAAAATTTTGAAAGAAAAAGAATAGAAAAAAA
Found at i:109129316 original size:18 final size:19
Alignment explanation
Indices: 109129281--109129318 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
109129271 AAAGAAAAAG
**
109129281 AATAGAAAAAAATGTTAAA
1 AATAGAAAAAAAAATTAAA
109129300 AATA-AAAAAAAAATTAAA
1 AATAGAAAAAAAAATTAAA
109129318 A
1 A
109129319 TTAAGCAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.18
Consensus pattern (19 bp):
AATAGAAAAAAAAATTAAA
Found at i:109135660 original size:21 final size:21
Alignment explanation
Indices: 109135631--109135673 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
109135621 CATTTTGTTT
*
109135631 ATTTTGTTCATTTGTAACTTG
1 ATTTAGTTCATTTGTAACTTG
* *
109135652 ATTTAGTTCCTTTGTAATTTG
1 ATTTAGTTCATTTGTAACTTG
109135673 A
1 A
109135674 CTTTTAAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.09, G:0.14, T:0.56
Consensus pattern (21 bp):
ATTTAGTTCATTTGTAACTTG
Found at i:109139393 original size:22 final size:22
Alignment explanation
Indices: 109139368--109139411 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
109139358 TAGTACAACT
109139368 TGACACACCAATGAAACTACAC
1 TGACACACCAATGAAACTACAC
109139390 TGACACACCAATGAAACTACAC
1 TGACACACCAATGAAACTACAC
109139412 GTATTTTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.32, G:0.09, T:0.14
Consensus pattern (22 bp):
TGACACACCAATGAAACTACAC
Found at i:109141363 original size:18 final size:18
Alignment explanation
Indices: 109141282--109141365 Score: 79
Period size: 18 Copynumber: 4.9 Consensus size: 18
109141272 TTAAATCATT
*
109141282 TTATTATTACTATTTTT-
1 TTATTATTATTATTTTTA
* *
109141299 TCA-TA-TA-TATTTATA
1 TTATTATTATTATTTTTA
**
109141314 TTATTATTATTATCATTA
1 TTATTATTATTATTTTTA
109141332 TTATTATTATTATTTTTA
1 TTATTATTATTATTTTTA
109141350 TTA-TAGTTATTATTTT
1 TTATTA-TTATTATTTT
109141366 AAGACTTTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
14 6 0.11
15 4 0.07
16 4 0.07
17 6 0.11
18 34 0.63
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (18 bp):
TTATTATTATTATTTTTA
Found at i:109141382 original size:3 final size:3
Alignment explanation
Indices: 109141312--109141363 Score: 70
Period size: 3 Copynumber: 17.3 Consensus size: 3
109141302 TATATATTTA
* *
109141312 TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT TTT TAT TA- TAGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
109141357 TAT TAT T
1 TAT TAT T
109141364 TTAAGACTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 39 0.91
4 2 0.05
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:109142732 original size:21 final size:21
Alignment explanation
Indices: 109142706--109142748 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
109142696 TAAATCACAA
109142706 TACGAGTTTTAAATAAAATGC
1 TACGAGTTTTAAATAAAATGC
109142727 TACGAGTTTTAAATAAAATGC
1 TACGAGTTTTAAATAAAATGC
109142748 T
1 T
109142749 TACTCTCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (21 bp):
TACGAGTTTTAAATAAAATGC
Found at i:109149017 original size:133 final size:133
Alignment explanation
Indices: 109148774--109149473 Score: 1096
Period size: 133 Copynumber: 5.3 Consensus size: 133
109148764 TCACCATAGA
* * ** * * * *
109148774 AGATCTTATTTCCCTGATATTATAGTGGAGCAGATCGAAGATGGGGAATTTAGGCTTCCTGATAT
1 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
* * * *
109148839 TGCACTGAAGTAGATTTAAACCACCATCCTAGCTCCCTAATGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
109148904 TGT
131 TGT
* *
109148907 AGATCTTGTTTCCCTGATATTGCAGTGGAACAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
1 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
* *
109148972 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAGGTTGTAGGGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
109149037 TGT
131 TGT
* * * *
109149040 AGATCTTGTTTCTCTGAGATTGTAGTGGAGCAGATTGAAGACGGTGAATCTAGGCTTCCTGATGT
1 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
* *
109149105 TGCAGTGAAGTAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGCGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
109149170 TGT
131 TGT
* * *
109149173 AGATCTTGTTTCCCTGAGATTACAGTAGAGCAGATCGAAGACAGCGAATCTAGGCTTCCTGATGT
1 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
*
109149238 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
109149303 TGT
131 TGT
* * *
109149306 AAATCTTGTTTCCCTGAGATTGCAGTGGAACAGATCGAAGACGGTGAATCTAGGCTTCCTGATGT
1 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
109149371 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
109149436 TGT
131 TGT
* * *
109149439 AGATATTGTTTCCCTGA-AGCTGCAGTGAAGCAGAT
1 AGATCTTGTTTCCCTGAGA-TTGCAGTGGAGCAGAT
109149474 TTAAGCACCA
Statistics
Matches: 522, Mismatches: 44, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
132 1 0.00
133 521 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (133 bp):
AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
TGT
Found at i:109149250 original size:45 final size:45
Alignment explanation
Indices: 109149201--109149385 Score: 112
Period size: 45 Copynumber: 4.2 Consensus size: 45
109149191 ATTACAGTAG
109149201 AGCAGATCGAAGACAGCGAATCTAGGCTTCCTGATGTTGCAGTGA
1 AGCAGATCGAAGACAGCGAATCTAGGCTTCCTGATGTTGCAGTGA
** * * * * * * *
109149246 AGCAGATTTAAGCCA-C-CATCCTA-GCTCCCTAAAGTTGTAGTGG
1 AGCAGATCGAAGACAGCGAAT-CTAGGCTTCCTGATGTTGCAGTGA
* * * ** ** * *
109149289 AGTAGGTTGAAGATTGTAAATCT-TGTTTCCCTGA-GATTGCAGTGGA
1 AGCAGATCGAAGACAGCGAATCTAGGCTT-CCTGATG-TTGCAGT-GA
* *
109149335 A-CAGATCGAAGACGGTGAATCTAGGCTTCCTGATGTTGCAGTGA
1 AGCAGATCGAAGACAGCGAATCTAGGCTTCCTGATGTTGCAGTGA
109149379 AGCAGAT
1 AGCAGAT
109149386 TTAAGCCACC
Statistics
Matches: 100, Mismatches: 30, Indels: 20
0.67 0.20 0.13
Matches are distributed among these distances:
43 26 0.26
44 12 0.12
45 56 0.56
46 6 0.06
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (45 bp):
AGCAGATCGAAGACAGCGAATCTAGGCTTCCTGATGTTGCAGTGA
Found at i:109149510 original size:87 final size:88
Alignment explanation
Indices: 109149371--109149544 Score: 332
Period size: 87 Copynumber: 2.0 Consensus size: 88
109149361 TTCCTGATGT
109149371 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
1 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
109149436 TGTAGATATTGTTTCCCTGAAGC
66 TGTAGATATTGTTTCCCTGAAGC
109149459 TGCAGTGAAGCAGATTTAAG-CACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
1 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
*
109149523 TGTAGATCTTGTTTCCCTGAAG
66 TGTAGATATTGTTTCCCTGAAG
109149545 TTGCTGTGGA
Statistics
Matches: 85, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
87 65 0.76
88 20 0.24
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (88 bp):
TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
TGTAGATATTGTTTCCCTGAAGC
Found at i:109156786 original size:21 final size:21
Alignment explanation
Indices: 109156739--109156790 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
109156729 TACATATAAT
* * *
109156739 AAAATACATATACTAATATTA
1 AAAATAAATATACTAAGAATA
* *
109156760 ATAATAAATATACTAGGAATA
1 AAAATAAATATACTAAGAATA
109156781 AAAATAAATA
1 AAAATAAATA
109156791 AAATAATAGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.29
Consensus pattern (21 bp):
AAAATAAATATACTAAGAATA
Found at i:109157334 original size:23 final size:26
Alignment explanation
Indices: 109157308--109157355 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
109157298 AAATAATGAT
109157308 ATATAC-ATA-ATATATA-TAGAAAC
1 ATATACGATATATATATATTAGAAAC
*
109157331 ATATACGGTATATATATATTAGAAA
1 ATATACGATATATATATATTAGAAA
109157356 TGATAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 6 0.29
24 2 0.10
25 7 0.33
26 6 0.29
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.33
Consensus pattern (26 bp):
ATATACGATATATATATATTAGAAAC
Found at i:109161446 original size:18 final size:18
Alignment explanation
Indices: 109161421--109161495 Score: 105
Period size: 18 Copynumber: 4.2 Consensus size: 18
109161411 ACCGTTTACG
109161421 GTACTATTCACGTATACA
1 GTACTATTCACGTATACA
* *
109161439 GCACTATTCATGTATACA
1 GTACTATTCACGTATACA
* *
109161457 GTACTATTCACATATACG
1 GTACTATTCACGTATACA
*
109161475 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
109161493 GTA
1 GTA
109161496 GTTGGGATTG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.33
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:109174386 original size:21 final size:21
Alignment explanation
Indices: 109174351--109174432 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 21
109174341 ATCAGAATAC
*
109174351 GACACATAA-GTGCCTGAAAT
1 GACACACAAGGTGCCTGAAAT
* ***
109174371 GACACACGAGGTGCCTGCTGT
1 GACACACAAGGTGCCTGAAAT
109174392 GACACACAAGGTGCCTGAAAT
1 GACACACAAGGTGCCTGAAAT
* *
109174413 ACGACACATAAAGTGCCTGA
1 --GACACACAAGGTGCCTGA
109174433 TCAGTAAAGT
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
20 7 0.15
21 25 0.52
23 16 0.33
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (21 bp):
GACACACAAGGTGCCTGAAAT
Found at i:109174686 original size:51 final size:53
Alignment explanation
Indices: 109174626--109174744 Score: 131
Period size: 51 Copynumber: 2.3 Consensus size: 53
109174616 TGTCCAACCA
* *
109174626 AAACACACCAGTATAATCC-TCCAAAACACA-CCAG--TATCATATAATCCTCCC
1 AAACACACCAGTATAATCCAACCAAAACACACCCAGAATATTATA-AATCCT-CC
* * *
109174677 AAACACACCAGAAT-ATCCAACCCAAACACACCCGGAATATTATAAATCCTCC
1 AAACACACCAGTATAATCCAACCAAAACACACCCAGAATATTATAAATCCTCC
109174729 ATAACACACCAGTATA
1 A-AACACACCAGTATA
109174745 TCATATCCTC
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
50 4 0.07
51 22 0.39
52 6 0.11
53 18 0.32
54 6 0.11
ACGTcount: A:0.44, C:0.34, G:0.05, T:0.18
Consensus pattern (53 bp):
AAACACACCAGTATAATCCAACCAAAACACACCCAGAATATTATAAATCCTCC
Found at i:109174700 original size:23 final size:23
Alignment explanation
Indices: 109174596--109174708 Score: 77
Period size: 23 Copynumber: 4.7 Consensus size: 23
109174586 ATACACGGAT
* * *
109174596 TCCATCCAAACACACCAAAAT-G
1 TCCACCCAAACACACCAGAATAA
* *
109174618 TCCAACCAAAACACACCAGTATAA
1 TCC-ACCCAAACACACCAGAATAA
* *
109174642 TCCTCCAAAACACACCAGTATCATATAA
1 TCCACCCAAACACACCAG----A-ATAA
*
109174670 TCCTCCCAAACACACCAGAAT-A
1 TCCACCCAAACACACCAGAATAA
109174692 TCCAACCCAAACACACC
1 TCC-ACCCAAACACACC
109174709 CGGAATATTA
Statistics
Matches: 74, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
22 7 0.09
23 42 0.57
24 4 0.05
28 21 0.28
ACGTcount: A:0.44, C:0.38, G:0.04, T:0.14
Consensus pattern (23 bp):
TCCACCCAAACACACCAGAATAA
Found at i:109177938 original size:40 final size:40
Alignment explanation
Indices: 109177893--109177970 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
109177883 TTTGATACCT
109177893 GCCTTATCACAAAAGGCTTGAAACTGAGCTGAAGTATAAC
1 GCCTTATCACAAAAGGCTTGAAACTGAGCTGAAGTATAAC
109177933 GCCTTATCACAAAAGGCTTGAAACTGAGCTGAAGTATA
1 GCCTTATCACAAAAGGCTTGAAACTGAGCTGAAGTATA
109177971 CTCTGTTCCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (40 bp):
GCCTTATCACAAAAGGCTTGAAACTGAGCTGAAGTATAAC
Found at i:109183126 original size:27 final size:27
Alignment explanation
Indices: 109183094--109183151 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
109183084 GATGATGTCC
109183094 GCATTATAGGGATTTGCGGAATGGGTG
1 GCATTATAGGGATTTGCGGAATGGGTG
109183121 GCATTATAGGGATTTGCGGAATGGGTG
1 GCATTATAGGGATTTGCGGAATGGGTG
109183148 GCAT
1 GCAT
109183152 CGGTAAAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.22, C:0.09, G:0.40, T:0.29
Consensus pattern (27 bp):
GCATTATAGGGATTTGCGGAATGGGTG
Found at i:109189861 original size:40 final size:40
Alignment explanation
Indices: 109189806--109189888 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
109189796 ACATCTTCAG
*
109189806 TTGCACGTACTTTACCCGGGA-AACTTATGTACATGGATTC
1 TTGCACGTACTTTACCC-GGACAACTTATGTACATGAATTC
*
109189846 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
1 TTGCACGTACTTTACCCGGACAACTTATGTACATGAATTC
109189886 TTG
1 TTG
109189889 TGTGTATGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (40 bp):
TTGCACGTACTTTACCCGGACAACTTATGTACATGAATTC
Found at i:109192800 original size:40 final size:40
Alignment explanation
Indices: 109192745--109192827 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
109192735 ACATCTTTAG
109192745 TTGCACGTACTTTACCCGGGA-AACTTATGTGCAT-AGATTC
1 TTGCACGTACTTTACCC-GGACAACTTATGTGCATGA-ATTC
109192785 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
1 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
109192825 TTG
1 TTG
109192828 TGTGTATGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
39 3 0.07
40 37 0.90
41 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (40 bp):
TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
Found at i:109193390 original size:153 final size:153
Alignment explanation
Indices: 109193098--109193392 Score: 371
Period size: 153 Copynumber: 1.9 Consensus size: 153
109193088 ATCTAAGGAA
* * * * *
109193098 CTGCAATCTTTGTGAAGGAGATATTCCGTGTGATATTTCTGGTCTATCCTCTTTGATACGTCTTG
1 CTGCAATCTTGGTGAAAGAGATATTCCGTGGGATATTTCTGGTCTATCCTCTTTGAAACATCTTG
* * * *
109193163 TTCTTAGTGGTAACAATTTCATCAGCATACCTGCATCTCTTACTCGACTCTCAAAGCGTCTGTTT
66 GTCTTAGGGGTAACAATTTCATCAGCATACCTGCATCTATTACTCGACTCTCAAAGCGTCTGTCT
* **
109193228 CTTGTATTGTCAAATTTCAACAT
131 ATTACATTGTCAAATTTCAACAT
* * *
109193251 CTGCAGTCTTGGTGAAAGAGATTTTCC-TAGGGATATTTCTGGTCTATCCTCTTTGAAATATCTT
1 CTGCAATCTTGGTGAAAGAGATATTCCGT-GGGATATTTCTGGTCTATCCTCTTTGAAACATCTT
* * * *
109193315 GGTCTT-GGGAGTAACAATTTCATCAGCATACCTGCATCTATTATTCGACTTTCCAAGCTTCAT-
65 GGTCTTAGGG-GTAACAATTTCATCAGCATACCTGCATCTATTACTCGACTCTCAAAGCGTC-TG
109193378 TCTATTACATTGTCA
128 TCTATTACATTGTCA
109193393 GATTGCAAGA
Statistics
Matches: 120, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
152 3 0.03
153 116 0.97
154 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (153 bp):
CTGCAATCTTGGTGAAAGAGATATTCCGTGGGATATTTCTGGTCTATCCTCTTTGAAACATCTTG
GTCTTAGGGGTAACAATTTCATCAGCATACCTGCATCTATTACTCGACTCTCAAAGCGTCTGTCT
ATTACATTGTCAAATTTCAACAT
Found at i:109197293 original size:20 final size:21
Alignment explanation
Indices: 109197249--109197303 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
109197239 TTGTTCATAT
* * *
109197249 TATTATTTCTTTACAAAATTCA
1 TATTATTTATTTA-AAAAATAA
109197271 TATTATTT-TTTAAAAAATAA
1 TATTATTTATTTAAAAAATAA
109197291 TATT-TTTATTTAA
1 TATTATTTATTTAA
109197304 TATTTAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 3 0.10
20 15 0.50
21 4 0.13
22 8 0.27
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTATTTATTTAAAAAATAA
Found at i:109201666 original size:23 final size:22
Alignment explanation
Indices: 109201640--109201683 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
109201630 ATTAGATATA
109201640 TAAATACA-AACTAGTTAAGCATG
1 TAAA-ACACAACTA-TTAAGCATG
*
109201663 TAAAACACAATTATTAAGCAT
1 TAAAACACAACTATTAAGCAT
109201684 TAATTAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27
Consensus pattern (22 bp):
TAAAACACAACTATTAAGCATG
Found at i:109201689 original size:99 final size:99
Alignment explanation
Indices: 109201583--109201786 Score: 277
Period size: 100 Copynumber: 2.1 Consensus size: 99
109201573 ATAATTATCA
* * *
109201583 CTTAATTAATACTACAGTTATATAAATA-AGCTAAAACTAAATTTATAATTAGATATATAAATAC
1 CTTAATTAATACTACAGTTATACAAAAACAACTAAAACTAAATTTATAATTAGATATATAAATAC
* *
109201647 AAACTAGTTAAGCATGTAAAACACAATTATTAA-G
66 AAACTAGCTAAGCACGTAAAACACAATT-TTAATG
* * * *
109201681 CATTAATTAGTATTTCAGTTATACAAAAACAACTAAAATTAAATTTATAATTAGATATATAAATA
1 C-TTAATTAATACTACAGTTATACAAAAACAACTAAAACTAAATTTATAATTAGATATATAAATA
* *
109201746 CAAACTAGCTGAGCACGTAAAACATAATTTTAATG
65 CAAACTAGCTAAGCACGTAAAACACAATTTTAATG
109201781 CTTAAT
1 CTTAAT
109201787 AATTATAAAG
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
98 1 0.01
99 31 0.34
100 60 0.65
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (99 bp):
CTTAATTAATACTACAGTTATACAAAAACAACTAAAACTAAATTTATAATTAGATATATAAATAC
AAACTAGCTAAGCACGTAAAACACAATTTTAATG
Found at i:109212323 original size:40 final size:35
Alignment explanation
Indices: 109212257--109212387 Score: 117
Period size: 35 Copynumber: 3.6 Consensus size: 35
109212247 CATGGAAATG
109212257 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
109212292 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT
** * *
109212332 TAAGAAACGTAGGTAT-G-A-CAATTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATC-A-T-CCATACTGAGT
109212367 TGT-AATATGTAGGTATGGTAT
1 TGTGAA-ATGTAGGTATGGTAT
109212388 TTCAATGAGG
Statistics
Matches: 78, Mismatches: 7, Indels: 19
0.75 0.07 0.18
Matches are distributed among these distances:
33 2 0.03
34 4 0.05
35 39 0.50
36 1 0.01
37 1 0.01
38 4 0.05
39 1 0.01
40 26 0.33
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:109212851 original size:15 final size:15
Alignment explanation
Indices: 109212831--109212860 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
109212821 CATTTTATTT
*
109212831 ATATTAGGATAATTA
1 ATATTAAGATAATTA
109212846 ATATTAAGATAATTA
1 ATATTAAGATAATTA
109212861 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:109212888 original size:27 final size:26
Alignment explanation
Indices: 109212827--109212889 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
109212817 ACTCCATTTT
109212827 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
109212854 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
109212882 ATTTTATT
1 ATTTTATT
109212890 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:109216604 original size:5 final size:5
Alignment explanation
Indices: 109216590--109216640 Score: 54
Period size: 5 Copynumber: 10.4 Consensus size: 5
109216580 GTAACCCAAT
*
109216590 TTTTA TTTTTA TTTTA TTTTA GTTTA TTTTA TTTT- TTCTTA --TTA TTTTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA
109216639 TT
1 TT
109216641 ATTTATTATT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.08
4 2 0.05
5 29 0.74
6 5 0.13
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:109216606 original size:11 final size:11
Alignment explanation
Indices: 109216590--109216647 Score: 57
Period size: 10 Copynumber: 5.2 Consensus size: 11
109216580 GTAACCCAAT
109216590 TTTTATTTTTA
1 TTTTATTTTTA
109216601 TTTTA-TTTTA
1 TTTTATTTTTA
*
109216611 GTTTA-TTTTA
1 TTTTATTTTTA
*
109216621 TTTTTTCTTATTA
1 TTTTAT-TT-TTA
109216634 TTTTATTATTTA
1 TTTTATT-TTTA
109216646 TT
1 TT
109216648 ATTTTCAGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 17 0.44
11 5 0.13
12 8 0.21
13 9 0.23
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.78
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:109216636 original size:18 final size:18
Alignment explanation
Indices: 109216591--109216650 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 18
109216581 TAACCCAATT
*
109216591 TTTATTTTTATTTTA-T-
1 TTTATTATTATTTTATTA
* *
109216607 TTTAGT-TTATTTTATTT
1 TTTATTATTATTTTATTA
*
109216624 TTTCTTATTATTTTATTA
1 TTTATTATTATTTTATTA
109216642 TTTATTATT
1 TTTATTATT
109216651 TTCAGATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 8 0.22
16 6 0.17
17 4 0.11
18 18 0.50
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (18 bp):
TTTATTATTATTTTATTA
Found at i:109218182 original size:15 final size:15
Alignment explanation
Indices: 109218162--109218191 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
109218152 CATTTTATTT
*
109218162 ATATTAGGATAATTA
1 ATATTAAGATAATTA
109218177 ATATTAAGATAATTA
1 ATATTAAGATAATTA
109218192 TTAAGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:109225996 original size:155 final size:155
Alignment explanation
Indices: 109225714--109226026 Score: 608
Period size: 155 Copynumber: 2.0 Consensus size: 155
109225704 CCTTAAACTT
109225714 TTGAATTTAAGAGATTGCAAAAGTCTTAGGACTCTTCCAACCAAAATTGGAATGCAATCTCTTGA
1 TTGAATTTAAGAGATTGCAAAAGTCTTAGGACTCTTCCAACCAAAATTGGAATGCAATCTCTTGA
109225779 AACATTAATTCTTTCGGGTTGCTCAAGCCTTGTAAGGTTTCCGAAGATTAATGGGAAAATGGAAC
66 AACATTAATTCTTTCGGGTTGCTCAAGCCTTGTAAGGTTTCCGAAGATTAATGGGAAAATGGAAC
109225844 GTCTAAAAACTCTAGATCTTTCCGG
131 GTCTAAAAACTCTAGATCTTTCCGG
*
109225869 TTGAATTTAAGAGATTGCAAAAGTCTTAGGACTCTTCCGACCAAAATTGGAATGCAATCTCTTGA
1 TTGAATTTAAGAGATTGCAAAAGTCTTAGGACTCTTCCAACCAAAATTGGAATGCAATCTCTTGA
*
109225934 AACATTAATTCTTTCGGGTTGCTCAAGCCTTGTAAGGTTTCCGGAGATTAATGGGAAAATGGAAC
66 AACATTAATTCTTTCGGGTTGCTCAAGCCTTGTAAGGTTTCCGAAGATTAATGGGAAAATGGAAC
109225999 GTCTAAAAACTCTAGATCTTTCCGG
131 GTCTAAAAACTCTAGATCTTTCCGG
109226024 TTG
1 TTG
109226027 TTATAGAGTT
Statistics
Matches: 156, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
155 156 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (155 bp):
TTGAATTTAAGAGATTGCAAAAGTCTTAGGACTCTTCCAACCAAAATTGGAATGCAATCTCTTGA
AACATTAATTCTTTCGGGTTGCTCAAGCCTTGTAAGGTTTCCGAAGATTAATGGGAAAATGGAAC
GTCTAAAAACTCTAGATCTTTCCGG
Found at i:109230732 original size:44 final size:44
Alignment explanation
Indices: 109230682--109230812 Score: 131
Period size: 44 Copynumber: 3.0 Consensus size: 44
109230672 GGCGATATTT
* *
109230682 GCTATCTTTGATCTGCTCTCTGTCAATACAGAGACGCCAAATCC
1 GCTATCTTTGATCTGCTCTCTATCAAAACAGAGACGCCAAATCC
* * * * * * *
109230726 GTTATCTTCGATCTGTTCCCTAT-AAGAACAGGGATGCCAAATCT
1 GCTATCTTTGATCTGCTCTCTATCAA-AACAGAGACGCCAAATCC
* *
109230770 GCTAT-TTTCGATCTGCTCTCTACCAACACAGAGACGCCAAATC
1 GCTATCTTT-GATCTGCTCTCTATCAAAACAGAGACGCCAAATC
109230813 TGTTTTAATC
Statistics
Matches: 67, Mismatches: 17, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
43 4 0.06
44 61 0.91
45 2 0.03
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (44 bp):
GCTATCTTTGATCTGCTCTCTATCAAAACAGAGACGCCAAATCC
Found at i:109231312 original size:89 final size:89
Alignment explanation
Indices: 109231198--109231372 Score: 289
Period size: 89 Copynumber: 2.0 Consensus size: 89
109231188 AAGACTAATG
* * *
109231198 ATTTTTAGCCTATTACCCTATTGCTTATAG-GGTTAAGGCTTGGTGGCTTGAATCTGCTTCACTA
1 ATTTTCAGCCTATTACCCTACTGCTTA-AGTGATTAAGGCTTGGTGGCTTGAATCTGCTTCACTA
109231262 CAACTTCAGGAAGGCAAGATTTGTA
65 CAACTTCAGGAAGGCAAGATTTGTA
* *
109231287 ATTTTCAGCCTATTACCCTACTGCTTAAGTGATTAAGGCTTGGTGGCTTGAATCTGCTTCAGTGC
1 ATTTTCAGCCTATTACCCTACTGCTTAAGTGATTAAGGCTTGGTGGCTTGAATCTGCTTCACTAC
109231352 AACTTCAGGAAGGCAAGATTT
66 AACTTCAGGAAGGCAAGATTT
109231373 ACCGTCTTCA
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
88 2 0.03
89 78 0.98
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.35
Consensus pattern (89 bp):
ATTTTCAGCCTATTACCCTACTGCTTAAGTGATTAAGGCTTGGTGGCTTGAATCTGCTTCACTAC
AACTTCAGGAAGGCAAGATTTGTA
Found at i:109231590 original size:44 final size:44
Alignment explanation
Indices: 109231529--109232282 Score: 409
Period size: 44 Copynumber: 16.4 Consensus size: 44
109231519 TCTGCTCCAT
109231529 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTAC
1 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTAC
* ** * ** * *
109231573 TGCAACTTTAGATAGATAA-AATCTGTAA-TTTTAGCTTTAATCTGTTCCAC
1 TGCAACTTCAGGGAGATAAGACT-TGTAACTTCGA-C-CT-A-C---TCTAC
* * * * * *
109231623 TGCAACTTCAGGGAAATAAGATTTGCTATCTTC-AGTCTCCTCTAT
1 TGCAACTTCAGGGAGATAAGACTTG-TAACTTCGA-CCTACTCTAC
* *
109231668 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTAT
1 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTAC
* * * **
109231712 TGCAACTTCAGAGAGATAAGA-TCTGTAATTTAGCTTCAATCTGTTCTAC
1 TGCAACTTCAGGGAGATAAGACT-TGT-A---A-CTTCGACCTACTCTAC
* * * * * *
109231761 TGCAACTTCAGGGAAATAAGATTTGCTATCTTC-AGTCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGACTTG-TAACTTCGA-CCTACTCTAC
109231806 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTAC
1 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTAC
* ** * *
109231850 TGCAACTTCAGAGAGATAAGA-TCTGTAA-TTTTAGCTTTAATCTGTTCCAC
1 TGCAACTTCAGGGAGATAAGACT-TGTAACTTCGA-C-CT-A-C---TCTAC
* * * * * *
109231900 TGCAATTTCAGGGAAATAAGATTTGCTATCTTC-AGTCTATTCTAC
1 TGCAACTTCAGGGAGATAAGACTTG-TAACTTCGA-CCTACTCTAC
* *
109231945 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTCTAT
1 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTAC
* * * * *
109231989 TGCAACTTCAGAGAGATAAGA-TCTGTAATTTAG-CTTTAATCTGTTCCAC
1 TGCAACTTCAGGGAGATAAGACT-TGTAACTTCGAC-CT-A-C---TCTAC
* * * * * *
109232038 TGCAACTTCAGGGAAATAAGATTTGCTATCTTC-AGTCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGACTTG-TAACTTCGA-CCTACTCTAC
*
109232083 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACTTACTCTAC
1 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTAC
* * * ** *
109232127 TGCAACTTCAGAGAGATAAGA-TCTGTAATTTAGCTTCAATCTGTTCCAC
1 TGCAACTTCAGGGAGATAAGACT-TGT-A---A-CTTCGACCTACTCTAC
* * * ** * *
109232176 TGCAACTTCAGGGAAATAAGATTTGCTATCTTC-AGTTTGCTCCAC
1 TGCAACTTCAGGGAGATAAGACTTG-TAACTTCGA-CCTACTCTAC
* *
109232221 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCTTTAC
1 TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTAC
109232265 TGCAACTTCAGGGAGATA
1 TGCAACTTCAGGGAGATA
109232283 TGGTTCACGT
Statistics
Matches: 550, Mismatches: 104, Indels: 112
0.72 0.14 0.15
Matches are distributed among these distances:
43 13 0.02
44 206 0.37
45 159 0.29
46 3 0.01
47 2 0.00
48 4 0.01
49 91 0.17
50 57 0.10
51 11 0.02
52 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTACTCTAC
Found at i:109231817 original size:138 final size:138
Alignment explanation
Indices: 109231426--109232282 Score: 1462
Period size: 138 Copynumber: 6.2 Consensus size: 138
109231416 CTGTTTTGAT
* *
109231426 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTAGCTTCAATCTGTTCCACTTCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
*
109231491 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
109231556 ACTTCGAC
131 ACTTCGAC
* * * * *
109231564 CTACTCTACTGCAACTTTAGATAGATAAAATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAAC
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAA-TTTAGCTTCAATCTGTTCCACTGCAAC
* * *
109231629 TTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCTATTGCAACTTCAGGGAGATAAGACTTGT
65 TTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
109231694 AACTTCGAC
130 AACTTCGAC
* *
109231703 CTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCTACTGCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
109231768 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
109231833 ACTTCGAC
131 ACTTCGAC
* * *
109231841 CTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAAT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAA-TTTAGCTTCAATCTGTTCCACTGCAAC
** *
109231906 TTCAGGGAAATAAGATTTGCTATCTTCAGTCTATTCTACTGCAACTTCAGGGAGATAAGACTTGT
65 TTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
109231971 AACTTCGAC
130 AACTTCGAC
* *
109231980 CTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
109232045 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
109232110 ACTTCGAC
131 ACTTCGAC
* *
109232118 TTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
*
109232183 TCAGGGAAATAAGATTTGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
109232248 ACTTCGAC
131 ACTTCGAC
* *
109232256 CTGCTTTACTGCAACTTCAGGGAGATA
1 CTGCTCTACTGCAACTTCAGAGAGATA
109232283 TGGTTCACGT
Statistics
Matches: 675, Mismatches: 42, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
138 416 0.62
139 259 0.38
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (138 bp):
CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
ACTTCGAC
Found at i:109231920 original size:277 final size:277
Alignment explanation
Indices: 109231426--109232282 Score: 1518
Period size: 277 Copynumber: 3.1 Consensus size: 277
109231416 CTGTTTTGAT
* *
109231426 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTAGCTTCAATCTGTTCCACTTCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
*
109231491 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
* * *
109231556 ACTTCGACCTACTCTACTGCAACTTTAGATAGATAAAATCTGTAATTTTAGCTTTAATCTGTTCC
131 ACTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCC
* *
109231621 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCTATTGCAACTTCAGGGAGATA
196 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATA
109231686 AGACTTGTAACTTCGAC
261 AGACTTGTAACTTCGAC
* *
109231703 CTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCTACTGCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
109231768 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
109231833 ACTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCC
131 ACTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCC
* *
109231898 ACTGCAATTTCAGGGAAATAAGATTTGCTATCTTCAGTCTATTCTACTGCAACTTCAGGGAGATA
196 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATA
109231963 AGACTTGTAACTTCGAC
261 AGACTTGTAACTTCGAC
* *
109231980 CTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
109232045 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
* *
109232110 ACTTCGACTTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAA-TTTAGCTTCAATCTGTTCC
131 ACTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCC
* * *
109232174 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATA
196 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATA
109232239 AGACTTGTAACTTCGAC
261 AGACTTGTAACTTCGAC
* *
109232256 CTGCTTTACTGCAACTTCAGGGAGATA
1 CTGCTCTACTGCAACTTCAGAGAGATA
109232283 TGGTTCACGT
Statistics
Matches: 556, Mismatches: 24, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
276 119 0.21
277 437 0.79
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (277 bp):
CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
ACTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCC
ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATA
AGACTTGTAACTTCGAC
Found at i:109232199 original size:415 final size:415
Alignment explanation
Indices: 109231429--109232282 Score: 1476
Period size: 415 Copynumber: 2.1 Consensus size: 415
109231419 TTTTGATCTG
* *
109231429 CTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTAGCTTCAATCTGTTCCACTTCAACTTCA
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACTTCA
* *
109231494 GGGAAATAAGATTTGCTATCTTCAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTTGTAACT
66 GGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACT
* *
109231559 TCGACCTACTCTACTGCAACTTTAGATAGATAAAATCTGTAATTTTAGCTTTAATCTGTTCCACT
131 TCGACCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTAATTTTAGCTTTAATCTGTTCCACT
* *
109231624 GCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCTATTGCAACTTCAGGGAGATAAGA
196 GCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCCACTGCAACTTCAGGGAGATAAGA
* *
109231689 CTTGTAACTTCGACCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCT
261 CTTGTAACTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCT
*
109231754 GTTCTACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGG
326 GTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGG
109231819 AGATAAGACTTGTAACTTCGACCTA
391 AGATAAGACTTGTAACTTCGACCTA
* *
109231844 CTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAATTTC
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTAA-TTTAGCTTCAATCTGTTCCACTGCAACTTC
* *
109231909 AGGGAAATAAGATTTGCTATCTTCAGTCTATTCTACTGCAACTTCAGGGAGATAAGACTTGTAAC
65 AGGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAAC
* * *
109231974 TTCGACCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAA-TTTAGCTTTAATCTGTTCCAC
130 TTCGACCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTAATTTTAGCTTTAATCTGTTCCAC
*
109232038 TGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAG
195 TGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCCACTGCAACTTCAGGGAGATAAG
*
109232103 ACTTGTAACTTCGACTTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATC
260 ACTTGTAACTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATC
*
109232168 TGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTTTGCTCCACTGCAACTTCAGG
325 TGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGG
*
109232233 GAGATAAGACTTGTAACTTCGACCTG
390 GAGATAAGACTTGTAACTTCGACCTA
* *
109232259 CTTTACTGCAACTTCAGGGAGATA
1 CTCTACTGCAACTTCAGAGAGATA
109232283 TGGTTCACGT
Statistics
Matches: 414, Mismatches: 24, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
415 288 0.70
416 126 0.30
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (415 bp):
CTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACTTCA
GGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACT
TCGACCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTAATTTTAGCTTTAATCTGTTCCACT
GCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCCACTGCAACTTCAGGGAGATAAGA
CTTGTAACTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCT
GTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGG
AGATAAGACTTGTAACTTCGACCTA
Found at i:109232374 original size:45 final size:46
Alignment explanation
Indices: 109232213--109232374 Score: 125
Period size: 48 Copynumber: 3.5 Consensus size: 46
109232203 ATCTTCAGTT
* * * *
109232213 TGCTCCACTGCAACTTCAGGGAGATAA-GA-CTTGTAACTTCGA-CC
1 TGCTCCACTGCAACTTCAGGGAGACAAGGATCATGT-ATTTTGATCC
** * * * * *
109232257 TGCTTTACTGCAACTTCAGGGAGATATGGTTCACGTGTTTTTTTATCC
1 TGCTCCACTGCAACTTCAGGGAGACAAGGATCA--TGTATTTTGATCC
* * ** *
109232305 TGCTCTACTGCAACATCAAAGAGACAAGGATCATG-ATTTTGATCT
1 TGCTCCACTGCAACTTCAGGGAGACAAGGATCATGTATTTTGATCC
109232350 TGCTCCACTGCAACTTCAGGGAGAC
1 TGCTCCACTGCAACTTCAGGGAGAC
109232375 GAGATCTTGT
Statistics
Matches: 90, Mismatches: 23, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
44 24 0.27
45 29 0.32
46 3 0.03
47 3 0.03
48 31 0.34
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (46 bp):
TGCTCCACTGCAACTTCAGGGAGACAAGGATCATGTATTTTGATCC
Found at i:109232726 original size:45 final size:45
Alignment explanation
Indices: 109232677--109232860 Score: 103
Period size: 45 Copynumber: 4.1 Consensus size: 45
109232667 CAAGAAGCCT
* *
109232677 AGATCTGTTGTCTTCGATCTGCTCCACTGCAATC-TCAGGGAAACA
1 AGATCTGCTGTCTTCAATCTGCTCCACTGCAA-CATCAGGGAAACA
* ** * * * * * *
109232722 AGATCTACAATCTTCAACCTACTCCACTACAACTTTAGGG-AGCTA
1 AGATCTGCTGTCTTCAATCTGCTCCACTGCAACATCAGGGAAAC-A
* * * * * * *
109232767 GGA--TGGTGGCTTAAATCTGCTTCACTGCAACATCA-GGAAGCCT
1 AGATCTGCTGTCTTCAATCTGCTCCACTGCAACATCAGGGAA-ACA
*
109232810 AGAT-TCGCTGTCTTCGATCTGCTCCACTGCAATC-TCAGGGAAACA
1 AGATCT-GCTGTCTTCAATCTGCTCCACTGCAA-CATCAGGGAAACA
109232855 AGATCT
1 AGATCT
109232861 ACAATCTTCA
Statistics
Matches: 97, Mismatches: 33, Indels: 17
0.66 0.22 0.12
Matches are distributed among these distances:
42 2 0.02
43 23 0.24
44 5 0.05
45 61 0.63
46 6 0.06
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (45 bp):
AGATCTGCTGTCTTCAATCTGCTCCACTGCAACATCAGGGAAACA
Found at i:109233005 original size:133 final size:133
Alignment explanation
Indices: 109232474--109233003 Score: 812
Period size: 133 Copynumber: 4.0 Consensus size: 133
109232464 AATCTTGGGT
* * * * *
109232474 CTACTCCACTACAACTTTAGGGAGCTAGGGTGGTGACTTAAATCTACTTCGCTGCAATATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
* *
109232539 AACCTAGATCTGCCGTCTTCGATTTGCTCCACTACAATCTCAAGGAAACAAGATCTACAATCTTC
66 AACCTAGATCTGCCGTCTTCGATCTGCTCCACTACAATCTCAGGGAAACAAGATCTACAATCTTC
109232604 AAC
131 AAC
* * *
109232607 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTACAATATCAAGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
* ** *
109232672 AGCCTAGATCTGTTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
66 AACCTAGATCTGCCGTCTTCGATCTGCTCCACTACAATCTCAGGGAAACAAGATCTACAATCTTC
109232737 AAC
131 AAC
109232740 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
* * *
109232805 AGCCTAGAT-TCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTT
66 AACCTAGATCT-GCCGTCTTCGATCTGCTCCACTACAATCTCAGGGAAACAAGATCTACAATCTT
*
109232869 CAGC
130 CAAC
* *
109232873 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGTTTAAATCTGCTTCGCTGCAACATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
* * * *
109232938 AACCTAGAT-TCGCCGTCTTCGATCTGATCCACTACAATCTCGGGGAAACAAGATCTATAATTTT
66 AACCTAGATCT-GCCGTCTTCGATCTGCTCCACTACAATCTCAGGGAAACAAGATCTACAATCTT
109233002 CA
130 CA
109233004 GCTTGTTGCC
Statistics
Matches: 370, Mismatches: 26, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
132 1 0.00
133 369 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (133 bp):
CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
AACCTAGATCTGCCGTCTTCGATCTGCTCCACTACAATCTCAGGGAAACAAGATCTACAATCTTC
AAC
Found at i:109237949 original size:26 final size:26
Alignment explanation
Indices: 109237912--109237966 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
109237902 TGATACAAAT
109237912 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
109237938 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
109237964 TGA
1 TGA
109237967 AAAGAATTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:109255143 original size:10 final size:9
Alignment explanation
Indices: 109255117--109255147 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
109255107 TTGTGTGTTC
109255117 TTTATTTTA
1 TTTATTTTA
109255126 TTTATTTTA
1 TTTATTTTA
109255135 TTATATTTTA
1 TT-TATTTTA
109255145 TTT
1 TTT
109255148 TTTCACAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:109259598 original size:10 final size:9
Alignment explanation
Indices: 109259572--109259602 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
109259562 TTGTGTGTTC
109259572 TTTATTTTA
1 TTTATTTTA
109259581 TTTATTTTA
1 TTTATTTTA
109259590 TTCTATTTTA
1 TT-TATTTTA
109259600 TTT
1 TTT
109259603 TTTCACAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:109260912 original size:26 final size:26
Alignment explanation
Indices: 109260865--109260919 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
109260855 AGTCAAACAT
*
109260865 GTATTTAGGTCAATTTAATCCTAGGG
1 GTATTTAGGTCAATTTAATCCTAGAG
* *
109260891 GTATTTCGGT-AATTTATCTCCTAGAG
1 GTATTTAGGTCAATTTA-ATCCTAGAG
109260917 GTA
1 GTA
109260920 AAACTGTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (26 bp):
GTATTTAGGTCAATTTAATCCTAGAG
Found at i:109262438 original size:26 final size:26
Alignment explanation
Indices: 109262407--109262514 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
109262397 TGAAATGCCC
*
109262407 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
109262433 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
109262459 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
109262485 ATCACGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
109262511 ATCA
1 ATCA
109262515 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:109267103 original size:26 final size:22
Alignment explanation
Indices: 109267051--109267105 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 22
109267041 ATAATTAATT
*
109267051 AATAATAAAATAATGTATATTT
1 AATAATAAAATAATGTATATTG
*
109267073 TATAATAAAATAAATGTAATATATGG
1 AATAATAAAAT-AATGT-ATAT-T-G
109267099 AATAATA
1 AATAATA
109267106 TATGGTAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 10 0.38
23 5 0.19
24 4 0.15
25 1 0.04
26 6 0.23
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.36
Consensus pattern (22 bp):
AATAATAAAATAATGTATATTG
Found at i:109267316 original size:25 final size:24
Alignment explanation
Indices: 109267279--109267335 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 24
109267269 ATAGAATGTG
109267279 TAATA-TATATATATAAATGAAATA
1 TAATATTATATATATAAAT-AAATA
109267303 TGAATATTAT-TATATAAATAAATA
1 T-AATATTATATATATAAATAAATA
109267327 TAATATTAT
1 TAATATTAT
109267336 CCATTAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 8 0.26
24 7 0.23
25 13 0.42
26 3 0.10
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (24 bp):
TAATATTATATATATAAATAAATA
Done.