Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 4 of 352
Found at i:1101297 original size:21 final size:21
Alignment explanation
Indices: 1101263--1101303 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1101253 AATAATTAAA
* *
1101263 AAAATTATAGATAATATAATG
1 AAAATTATACATAAAATAATG
*
1101284 AAAATTATCCATAAAATAAT
1 AAAATTATACATAAAATAAT
1101304 TTCTCATGGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (21 bp):
AAAATTATACATAAAATAATG
Found at i:1117325 original size:19 final size:19
Alignment explanation
Indices: 1117301--1117338 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
1117291 TTTTCATGTC
*
1117301 TGATTCTTTAACTAAGTTT
1 TGATTCCTTAACTAAGTTT
1117320 TGATTCCTTAACTAAGTTT
1 TGATTCCTTAACTAAGTTT
1117339 CAACCCGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.13, G:0.11, T:0.50
Consensus pattern (19 bp):
TGATTCCTTAACTAAGTTT
Found at i:1120733 original size:2 final size:2
Alignment explanation
Indices: 1120726--1120750 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1120716 ATCGAATTTT
1120726 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
1120751 GGTTTTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:1128259 original size:31 final size:29
Alignment explanation
Indices: 1128186--1128273 Score: 72
Period size: 31 Copynumber: 3.0 Consensus size: 29
1128176 GCACTCTAAT
1128186 CTATTA-AAAAATGATAAAAATTTTATTTA
1 CTATTATAAAAATGAT-AAAATTTTATTTA
* * * *
1128215 CATCTTTTTAAAATGATAAAATTATATTTTTA
1 C-TATTATAAAAATGATAAAATT-T-TATTTA
* *
1128247 CTATTATAAAAAT-ATACAATTTAATTT
1 CTATTATAAAAATGATAAAATTTTATTT
1128274 CAACATTCAA
Statistics
Matches: 45, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
28 3 0.07
29 2 0.04
30 16 0.36
31 18 0.40
32 6 0.13
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (29 bp):
CTATTATAAAAATGATAAAATTTTATTTA
Found at i:1132115 original size:21 final size:21
Alignment explanation
Indices: 1132078--1132117 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1132068 AAGAAATAAG
*
1132078 TTTAAAATTTATGATTTAGAT
1 TTTAAAATGTATGATTTAGAT
1132099 TTTAAAATGTA-GAATTTAG
1 TTTAAAATGTATG-ATTTAG
1132118 GGTTTTGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTAAAATGTATGATTTAGAT
Found at i:1138612 original size:45 final size:44
Alignment explanation
Indices: 1138563--1138711 Score: 110
Period size: 45 Copynumber: 3.3 Consensus size: 44
1138553 TAAATCCTGC
1138563 ATTTATAAAAAATTAGAAAAATTATAAAAATATAAAATCAATAAA
1 ATTTATAAAAAATTAGAAAAATTATAAAAATATAAAAT-AATAAA
* ** * *
1138608 ATTTATAAATAGTATT-G-AATTTTAATAAAAA-ATTAAATATTAAA
1 ATTTATAAA-A-AATTAGAAAAATT-ATAAAAATATAAAATAATAAA
* * *
1138652 ATTTTATTAAAAATTAGAAAAAAATATAAAAATCTTAAAA-ATATAAA
1 A-TTTATAAAAAATTAG-AAAAATTATAAAAAT-ATAAAATA-ATAAA
*
1138699 ATTT-TACAAAATT
1 ATTTATAAAAAATT
1138712 TTATAAAAAT
Statistics
Matches: 79, Mismatches: 15, Indels: 20
0.69 0.13 0.18
Matches are distributed among these distances:
43 3 0.04
44 8 0.10
45 40 0.51
46 16 0.20
47 12 0.15
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (44 bp):
ATTTATAAAAAATTAGAAAAATTATAAAAATATAAAATAATAAA
Found at i:1138719 original size:56 final size:57
Alignment explanation
Indices: 1138649--1138760 Score: 149
Period size: 56 Copynumber: 2.0 Consensus size: 57
1138639 ATTAAATATT
*
1138649 AAAATTTTATTAAAAATTAG-AAAAAAATATAAAA-ATCTTAAAAATATAAAATTTTAC
1 AAAATTTTATTAAAAA-TAGTAAAAAAATATAAAATAT-ATAAAAATATAAAATTTTAC
* * *
1138706 AAAATTTTA-TAAAAATAGTAAAAAAATGTAAAATATATAGAAATATAAACTTTTA
1 AAAATTTTATTAAAAATAGTAAAAAAATATAAAATATATAAAAATATAAAATTTTA
1138761 TAAAGTCGTA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
55 3 0.06
56 35 0.71
57 11 0.22
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (57 bp):
AAAATTTTATTAAAAATAGTAAAAAAATATAAAATATATAAAAATATAAAATTTTAC
Found at i:1138780 original size:18 final size:17
Alignment explanation
Indices: 1138768--1138819 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
1138758 TTATAAAGTC
1138768 GTAAAAAAATATAAAAT
1 GTAAAAAAATATAAAAT
* *
1138785 GTAAAGAAATATAAATT
1 GTAAAAAAATATAAAAT
*
1138802 TTATAAAAAATTATAAAA
1 GTA-AAAAAA-TATAAAA
1138820 ATTATTGTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
17 17 0.61
18 5 0.18
19 6 0.21
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
GTAAAAAAATATAAAAT
Found at i:1138793 original size:45 final size:44
Alignment explanation
Indices: 1138707--1138808 Score: 141
Period size: 45 Copynumber: 2.3 Consensus size: 44
1138697 AAATTTTACA
* * * *
1138707 AAATTTTATAAAAATAGTAAAAAAATGTAAAATATATAGAAATAT
1 AAATTTTAT-AAAGTCGTAAAAAAATATAAAATATAAAGAAATAT
*
1138752 AAACTTTTATAAAGTCGTAAAAAAATATAAAATGTAAAGAAATAT
1 AAA-TTTTATAAAGTCGTAAAAAAATATAAAATATAAAGAAATAT
1138797 AAATTTTATAAA
1 AAATTTTATAAA
1138809 AAATTATAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
44 9 0.18
45 36 0.71
46 6 0.12
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (44 bp):
AAATTTTATAAAGTCGTAAAAAAATATAAAATATAAAGAAATAT
Found at i:1138820 original size:45 final size:44
Alignment explanation
Indices: 1138707--1138821 Score: 140
Period size: 45 Copynumber: 2.6 Consensus size: 44
1138697 AAATTTTACA
* *
1138707 AAATTTTATAAAAATAGTAAAAAAATGTAAAATATATAGAAATAT
1 AAATTTTATAAAAA-AGTAAAAAAATATAAAATATAAAGAAATAT
*** *
1138752 AAACTTTTATAAAGTCGTAAAAAAATATAAAATGTAAAGAAATAT
1 AAA-TTTTATAAAAAAGTAAAAAAATATAAAATATAAAGAAATAT
* *
1138797 AAATTTTATAAAAAATTATAAAAAT
1 AAATTTTATAAAAAAGTAAAAAAAT
1138822 TATTGTATCA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
44 17 0.29
45 32 0.55
46 9 0.16
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (44 bp):
AAATTTTATAAAAAAGTAAAAAAATATAAAATATAAAGAAATAT
Found at i:1139042 original size:9 final size:10
Alignment explanation
Indices: 1139016--1139045 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
1139006 AAAAGAATTC
1139016 TAATTTTTAA
1 TAATTTTTAA
1139026 TAATTTTTAA
1 TAATTTTTAA
1139036 TAATTTTTAA
1 TAATTTTTAA
1139046 ATTTTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:1139051 original size:9 final size:10
Alignment explanation
Indices: 1139019--1139069 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
1139009 AGAATTCTAA
*
1139019 TTTTTAATAA
1 TTTTTAATAT
*
1139029 TTTTTAATAA
1 TTTTTAATAT
1139039 TTTTTAA-AT
1 TTTTTAATAT
*
1139048 TTTTGAA-AT
1 TTTTTAATAT
1139057 TTTATTAATAT
1 TTT-TTAATAT
1139068 TT
1 TT
1139070 AAATAAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
9 12 0.33
10 20 0.56
11 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (10 bp):
TTTTTAATAT
Found at i:1139428 original size:3 final size:3
Alignment explanation
Indices: 1139420--1139463 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
1139410 TAATTGCTTT
1139420 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1139464 TTAAGTTTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:1171677 original size:24 final size:24
Alignment explanation
Indices: 1171645--1171693 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
1171635 GGCCGAGTTT
1171645 CGTCGGGAACTTTTCCGGCTCCTC
1 CGTCGGGAACTTTTCCGGCTCCTC
1171669 CGTCGGGAACTTTTCCGGCTCCTC
1 CGTCGGGAACTTTTCCGGCTCCTC
1171693 C
1 C
1171694 TTCCACCGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.08, C:0.39, G:0.24, T:0.29
Consensus pattern (24 bp):
CGTCGGGAACTTTTCCGGCTCCTC
Found at i:1173763 original size:21 final size:22
Alignment explanation
Indices: 1173673--1173763 Score: 55
Period size: 23 Copynumber: 4.0 Consensus size: 22
1173663 GTACAAATAC
* *
1173673 TAAAA-AAAATGTTAAGATA-A
1 TAAAATAAAATTTTAATATATA
*
1173693 CTAAATATAAAATTTTAATAAATA
1 -TAAA-ATAAAATTTTAATATATA
*
1173717 -AAAATCTAAAATCATTAAATATTATA
1 TAAAA--TAAAAT--TTTAATA-TATA
1173743 TAAAA-AAAATTTTAATATATA
1 TAAAATAAAATTTTAATATATA
1173764 ATTTTAATTT
Statistics
Matches: 55, Mismatches: 6, Indels: 18
0.70 0.08 0.23
Matches are distributed among these distances:
21 9 0.16
22 10 0.18
23 17 0.31
24 6 0.11
25 6 0.11
26 3 0.05
27 4 0.07
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (22 bp):
TAAAATAAAATTTTAATATATA
Found at i:1179291 original size:11 final size:11
Alignment explanation
Indices: 1179268--1179316 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
1179258 TAAAATTTAA
1179268 AAAAAAAAG-G
1 AAAAAAAAGAG
*
1179278 AAAAAAAAGCG
1 AAAAAAAAGAG
**
1179289 AAATTAAAGAG
1 AAAAAAAAGAG
1179300 AAAAAAGAAGAG
1 AAAAAA-AAGAG
1179312 AAAAA
1 AAAAA
1179317 TTCATGAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
10 9 0.28
11 13 0.41
12 10 0.31
ACGTcount: A:0.76, C:0.02, G:0.18, T:0.04
Consensus pattern (11 bp):
AAAAAAAAGAG
Found at i:1182500 original size:23 final size:23
Alignment explanation
Indices: 1182474--1182549 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
1182464 ATAAGTGCCA
1182474 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
1182497 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
1182520 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
1182543 CACTGAT
1 CACTGAT
1182550 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:1182649 original size:8 final size:8
Alignment explanation
Indices: 1182636--1182664 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
1182626 ACCCGGGACT
1182636 CACTGTAA
1 CACTGTAA
1182644 CACTGTAA
1 CACTGTAA
1182652 CACTGTAA
1 CACTGTAA
1182660 CACTG
1 CACTG
1182665 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:1182795 original size:18 final size:17
Alignment explanation
Indices: 1182769--1182807 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
1182759 ATTTTCCTTC
1182769 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
1182786 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
1182804 CACA
1 CACA
1182808 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:1189466 original size:11 final size:11
Alignment explanation
Indices: 1189450--1189475 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1189440 CTCTGTAAAC
1189450 AAAAAAAACAA
1 AAAAAAAACAA
1189461 AAAAAAAACAA
1 AAAAAAAACAA
1189472 AAAA
1 AAAA
1189476 TGTCAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:1195249 original size:31 final size:31
Alignment explanation
Indices: 1195211--1195269 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
1195201 AGGAAACCAA
*
1195211 TTTCCAGTAAGGTTACAACTAAATGTATATT
1 TTTCCAGTAAGCTTACAACTAAATGTATATT
1195242 TTTCCAGTAAGCTTACAACTAAATGTAT
1 TTTCCAGTAAGCTTACAACTAAATGTAT
1195270 GTTTGGAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (31 bp):
TTTCCAGTAAGCTTACAACTAAATGTATATT
Found at i:1198272 original size:6 final size:6
Alignment explanation
Indices: 1198239--1198274 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
1198229 CAAATTTATC
* *
1198239 CGCCGA CGCAGA CGCAGA CGCCGA CGCCGA CGCCGA
1 CGCCGA CGCCGA CGCCGA CGCCGA CGCCGA CGCCGA
1198275 TTCATTCGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.22, C:0.44, G:0.33, T:0.00
Consensus pattern (6 bp):
CGCCGA
Found at i:1202704 original size:17 final size:16
Alignment explanation
Indices: 1202675--1202719 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
1202665 TCAATATAAA
1202675 ATATAATAAATAAAATT
1 ATATAA-AAATAAAATT
* *
1202692 ATTCTAAAAATAATATT
1 A-TATAAAAATAAAATT
1202709 ATATAAAAATA
1 ATATAAAAATA
1202720 CTTTCAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 9 0.38
17 11 0.46
18 4 0.17
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (16 bp):
ATATAAAAATAAAATT
Found at i:1205069 original size:13 final size:14
Alignment explanation
Indices: 1205053--1205094 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
1205043 TTTTAATTTT
1205053 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
1205066 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
1205081 ATTTTAAATAATAT
1 ATTTT-AATAATAT
1205095 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:1205079 original size:16 final size:16
Alignment explanation
Indices: 1205057--1205093 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
1205047 AATTTTATTT
1205057 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
1205074 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
1205089 TAATA
1 TAATA
1205094 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:1205146 original size:15 final size:15
Alignment explanation
Indices: 1205126--1205182 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
1205116 ATTCAATATT
1205126 AATATTTTAATAATA
1 AATATTTTAATAATA
*
1205141 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
1205160 AATATATTAATAATA
1 AATATTTTAATAATA
1205175 AAT-TTTTA
1 AATATTTTA
1205183 TAGTATAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
14 4 0.12
15 13 0.38
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:1205663 original size:15 final size:14
Alignment explanation
Indices: 1205633--1205671 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
1205623 CCAGAAAAGT
1205633 AAATAATTTTCCAA
1 AAATAATTTTCCAA
* *
1205647 AAATAATTTTTCGA
1 AAATAATTTTCCAA
*
1205661 AAATCATTTTC
1 AAATAATTTTC
1205672 GGTGAAACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.41
Consensus pattern (14 bp):
AAATAATTTTCCAA
Found at i:1212407 original size:15 final size:16
Alignment explanation
Indices: 1212389--1212418 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1212379 TTTATTCTCA
1212389 TTATTTTTA-TATTTG
1 TTATTTTTATTATTTG
1212404 TTATTTTTATTATTT
1 TTATTTTTATTATTT
1212419 TATATTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (16 bp):
TTATTTTTATTATTTG
Found at i:1212407 original size:24 final size:23
Alignment explanation
Indices: 1212380--1212424 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
1212370 AATTTAAGCT
1212380 TTATTCTCATTATTTTTATATTTG
1 TTATTCTCATTA-TTTTATATTTG
* *
1212404 TTATTTTTATTATTTTATATT
1 TTATTCTCATTATTTTATATT
1212425 AATTTAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (23 bp):
TTATTCTCATTATTTTATATTTG
Found at i:1212485 original size:64 final size:63
Alignment explanation
Indices: 1212339--1212483 Score: 168
Period size: 64 Copynumber: 2.2 Consensus size: 63
1212329 AACCCCTTTT
* * *
1212339 TTATTTTTGTTATTTTACTATTAAATTAATTAATTTAAGCTTTATTCTCATTATTTTTATATTTG
1 TTATTTTTATTATTTTA-TATTAAATTAATTAATTTAAGC-TTATTCTCATTATTATTATATTTA
* * *
1212404 TTATTTTTATTATTTTATATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATATTATA
1 TTATTTTTATTATTTTATATTAAATTAATTAATTTAAGCTTAT-TCTCATTATTATTATATT-TA
1212467 TTATTTATTATATATTT
1 TTATTT-TTAT-TATTT
1212484 ATTATGTAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
62 15 0.21
63 11 0.16
64 23 0.33
65 21 0.30
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.63
Consensus pattern (63 bp):
TTATTTTTATTATTTTATATTAAATTAATTAATTTAAGCTTATTCTCATTATTATTATATTTA
Found at i:1212488 original size:14 final size:16
Alignment explanation
Indices: 1212452--1212488 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
1212442 TTATGTTTCA
1212452 TATTATTATATTATAT
1 TATTATTATATTATAT
1212468 TATTTATTATA-TAT-T
1 TA-TTATTATATTATAT
1212483 TATTAT
1 TATTAT
1212489 GTAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.20
15 3 0.15
16 5 0.25
17 8 0.40
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTATTATATTATAT
Found at i:1213189 original size:126 final size:126
Alignment explanation
Indices: 1212954--1213197 Score: 452
Period size: 126 Copynumber: 1.9 Consensus size: 126
1212944 CATTGATCTT
* *
1212954 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
*
1213019 ACGTACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 ACATACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
1213080 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
*
1213145 ACATACTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 ACATACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
1213198 AGGCTAAAAC
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
126 114 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (126 bp):
CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
ACATACTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
Found at i:1214066 original size:37 final size:37
Alignment explanation
Indices: 1214001--1214182 Score: 298
Period size: 37 Copynumber: 5.0 Consensus size: 37
1213991 TACGTATGAT
* *
1214001 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
1214036 CACCTATCACTTTGTTTCTTGATCACATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1214073 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1214110 CACTTA-CACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
1214146 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1214183 TAAAGCTATC
Statistics
Matches: 137, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
35 9 0.07
36 39 0.28
37 89 0.65
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:1214139 original size:73 final size:74
Alignment explanation
Indices: 1214001--1214182 Score: 298
Period size: 73 Copynumber: 2.5 Consensus size: 74
1213991 TACGTATGAT
* *
1214001 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCTTGATCACAT
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCTTGATCACAT
1214064 AAGTGTAGC
66 AAGTGTAGC
* *
1214073 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACTTA-CACTTTGTTTCTTGATCAGAT
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCTTGATCACAT
1214137 AAGTGTAGC
66 AAGTGTAGC
*
1214146 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1214183 TAAAGCTATC
Statistics
Matches: 103, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
72 10 0.10
73 68 0.66
74 25 0.24
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (74 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCTTGATCACAT
AAGTGTAGC
Found at i:1214199 original size:46 final size:46
Alignment explanation
Indices: 1214146--1214512 Score: 446
Period size: 46 Copynumber: 7.6 Consensus size: 46
1214136 TAAGTGTAGC
* **
1214146 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
1214192 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1214238 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
1214290 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
1214342 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
1214388 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
1214434 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
1214486 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
1214513 AGTACTCAAA
Statistics
Matches: 291, Mismatches: 17, Indels: 26
0.87 0.05 0.08
Matches are distributed among these distances:
46 155 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 129 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:1214265 original size:52 final size:52
Alignment explanation
Indices: 1214189--1214506 Score: 426
Period size: 52 Copynumber: 6.3 Consensus size: 52
1214179 TAGCTAAAGC
* *
1214189 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
1214242 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
1214294 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1214346 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
1214392 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
1214438 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1214490 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
1214507 ATCAGAAGTA
Statistics
Matches: 239, Mismatches: 16, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
46 84 0.35
47 2 0.01
48 2 0.01
52 133 0.56
53 18 0.08
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:1214365 original size:196 final size:196
Alignment explanation
Indices: 1214146--1214498 Score: 607
Period size: 196 Copynumber: 1.8 Consensus size: 196
1214136 TAAGTGTAGC
* * * * *
1214146 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
*
1214211 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
* *
1214276 GTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
131 GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
1214341 T
196 T
*
1214342 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
*
1214407 TGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
*
1214472 GTAGCTAAAGCTACCACTTATCACTTT
131 GTAGCCAAAGCTACCACTTATCACTTT
1214499 ATCACTTGAT
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (196 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
T
Found at i:1214501 original size:98 final size:97
Alignment explanation
Indices: 1214146--1214512 Score: 501
Period size: 98 Copynumber: 3.7 Consensus size: 97
1214136 TAAGTGTAGC
* * * *
1214146 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
1214211 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
1214245 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
1214310 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
59 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
1214349 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
*
1214409 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
1214441 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
1214506 GATCAGA
65 GATCAGA
1214513 AGTACTCAAA
Statistics
Matches: 240, Mismatches: 15, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
92 39 0.16
94 1 0.00
96 1 0.00
98 150 0.62
99 7 0.03
100 2 0.01
101 1 0.00
104 39 0.16
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:1218155 original size:21 final size:22
Alignment explanation
Indices: 1218120--1218160 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
1218110 TTAACAATTT
1218120 AATAATTTAAATAATTTTTTTG
1 AATAATTTAAATAATTTTTTTG
1218142 AATAATTT-AATAATTTTTT
1 AATAATTTAAATAATTTTTT
1218161 AAAATTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
AATAATTTAAATAATTTTTTTG
Found at i:1218166 original size:18 final size:20
Alignment explanation
Indices: 1218117--1218170 Score: 76
Period size: 18 Copynumber: 2.7 Consensus size: 20
1218107 GTTTTAACAA
1218117 TTTAATAATTTAAATAATTTT
1 TTTAATAATTT-AATAATTTT
1218138 TTTGAATAATTTAATAA-TTT
1 TTT-AATAATTTAATAATTTT
1218158 TTTAA-AATTTAAT
1 TTTAATAATTTAAT
1218171 GATTAAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.25
19 2 0.06
20 6 0.19
21 8 0.25
22 8 0.25
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTAATAATTTAATAATTTT
Found at i:1224000 original size:20 final size:20
Alignment explanation
Indices: 1223975--1224034 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
1223965 ACAAACGAAC
1223975 TTGAATGAATAACCTGAATT
1 TTGAATGAATAACCTGAATT
* *
1223995 TTGAATGGAT-A--T--A-C
1 TTGAATGAATAACCTGAATT
1224009 TTGAATGAATAACCTGAATT
1 TTGAATGAATAACCTGAATT
1224029 TTGAAT
1 TTGAAT
1224035 AGATATACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 12
0.65 0.09 0.26
Matches are distributed among these distances:
14 9 0.30
15 2 0.07
17 2 0.07
19 2 0.07
20 15 0.50
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGAATGAATAACCTGAATT
Found at i:1224011 original size:34 final size:34
Alignment explanation
Indices: 1223973--1224044 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
1223963 GAACAAACGA
*
1223973 ACTTGAATGAATAACCTGAATTTTGAATGGATAT
1 ACTTGAATGAATAACCTGAATTTTGAATAGATAT
1224007 ACTTGAATGAATAACCTGAATTTTGAATAGATAT
1 ACTTGAATGAATAACCTGAATTTTGAATAGATAT
1224041 ACTT
1 ACTT
1224045 TTTATCCGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (34 bp):
ACTTGAATGAATAACCTGAATTTTGAATAGATAT
Found at i:1226612 original size:17 final size:17
Alignment explanation
Indices: 1226578--1226611 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
1226568 AACAAGTTTG
1226578 ATTAAAAAATCATTAAA
1 ATTAAAAAATCATTAAA
1226595 ATTAAAAAAT-ATTAAA
1 ATTAAAAAATCATTAAA
1226611 A
1 A
1226612 AACCCAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
ATTAAAAAATCATTAAA
Found at i:1233806 original size:24 final size:24
Alignment explanation
Indices: 1233749--1233807 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
1233739 AGGAGTAGAA
1233749 GATGCTCCAAAAGCAGGACTGCTT
1 GATGCTCCAAAAGCAGGACTGCTT
* **
1233773 GAAG-TGCCAAAAGCAGGTGTGCTT
1 GATGCT-CCAAAAGCAGGACTGCTT
1233797 GATGCTCCAAA
1 GATGCTCCAAA
1233808 TGTGCCTCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.03
24 27 0.93
25 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (24 bp):
GATGCTCCAAAAGCAGGACTGCTT
Found at i:1233921 original size:24 final size:24
Alignment explanation
Indices: 1233887--1233980 Score: 134
Period size: 24 Copynumber: 3.9 Consensus size: 24
1233877 ACTTCCAGTT
* *
1233887 GAACCAAAGGCCGGAGTGCTGGTA
1 GAACCAAAGGCAGGAGTGCTTGTA
* * *
1233911 GCACCAAAGGCAGGGGTGCTTGTG
1 GAACCAAAGGCAGGAGTGCTTGTA
*
1233935 GAACCAAAGGCAGGAGTGCTTGTG
1 GAACCAAAGGCAGGAGTGCTTGTA
1233959 GAACCAAAGGCAGGAGTGCTTG
1 GAACCAAAGGCAGGAGTGCTTG
1233981 AGGCACCAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.28, C:0.19, G:0.38, T:0.15
Consensus pattern (24 bp):
GAACCAAAGGCAGGAGTGCTTGTA
Found at i:1233965 original size:48 final size:48
Alignment explanation
Indices: 1233887--1233991 Score: 147
Period size: 48 Copynumber: 2.2 Consensus size: 48
1233877 ACTTCCAGTT
* * * *
1233887 GAACCAAAGGCCGGAGTGCTGGTAGCACCAAAGGCAGGGGTGCTTGTG
1 GAACCAAAGGCAGGAGTGCTGGTAGAACCAAAGGCAGGAGTGCTTGAG
* *
1233935 GAACCAAAGGCAGGAGTGCTTGTGGAACCAAAGGCAGGAGTGCTTGAG
1 GAACCAAAGGCAGGAGTGCTGGTAGAACCAAAGGCAGGAGTGCTTGAG
*
1233983 GCACCAAAG
1 GAACCAAAG
1233992 CTACCAAATG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.30, C:0.20, G:0.37, T:0.13
Consensus pattern (48 bp):
GAACCAAAGGCAGGAGTGCTGGTAGAACCAAAGGCAGGAGTGCTTGAG
Found at i:1233988 original size:24 final size:24
Alignment explanation
Indices: 1233887--1233991 Score: 131
Period size: 24 Copynumber: 4.4 Consensus size: 24
1233877 ACTTCCAGTT
* *
1233887 GAACCAAAGGCCGGAGTGCTGGTA-
1 GAACCAAAGGCAGGAGTGCTTG-AG
* * *
1233911 GCACCAAAGGCAGGGGTGCTTGTG
1 GAACCAAAGGCAGGAGTGCTTGAG
*
1233935 GAACCAAAGGCAGGAGTGCTTGTG
1 GAACCAAAGGCAGGAGTGCTTGAG
1233959 GAACCAAAGGCAGGAGTGCTTGAG
1 GAACCAAAGGCAGGAGTGCTTGAG
*
1233983 GCACCAAAG
1 GAACCAAAG
1233992 CTACCAAATG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
24 71 1.00
ACGTcount: A:0.30, C:0.20, G:0.37, T:0.13
Consensus pattern (24 bp):
GAACCAAAGGCAGGAGTGCTTGAG
Found at i:1234091 original size:24 final size:24
Alignment explanation
Indices: 1234058--1234122 Score: 112
Period size: 24 Copynumber: 2.7 Consensus size: 24
1234048 TGAAGATGCT
*
1234058 CCAAAAGCAGGAGTGCTCGAACCC
1 CCAAATGCAGGAGTGCTCGAACCC
*
1234082 CCAAATGCAGGAGTGCTTGAACCC
1 CCAAATGCAGGAGTGCTCGAACCC
1234106 CCAAATGCAGGAGTGCT
1 CCAAATGCAGGAGTGCT
1234123 GGAAGTGCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.31, C:0.29, G:0.26, T:0.14
Consensus pattern (24 bp):
CCAAATGCAGGAGTGCTCGAACCC
Found at i:1234133 original size:24 final size:24
Alignment explanation
Indices: 1234058--1234146 Score: 106
Period size: 24 Copynumber: 3.7 Consensus size: 24
1234048 TGAAGATGCT
1234058 CCAAAAGCAGGAGTGCTCGAACCC
1 CCAAAAGCAGGAGTGCTCGAACCC
* *
1234082 CCAAATGCAGGAGTGCTTGAACCC
1 CCAAAAGCAGGAGTGCTCGAACCC
* * ***
1234106 CCAAATGCAGGAGTGCTGGAAGTG
1 CCAAAAGCAGGAGTGCTCGAACCC
*
1234130 CCAAAAGCAGGTGTGCT
1 CCAAAAGCAGGAGTGCT
1234147 TGATGCTCCA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.30, C:0.26, G:0.29, T:0.15
Consensus pattern (24 bp):
CCAAAAGCAGGAGTGCTCGAACCC
Found at i:1234157 original size:24 final size:24
Alignment explanation
Indices: 1234055--1234158 Score: 102
Period size: 24 Copynumber: 4.3 Consensus size: 24
1234045 ACTTGAAGAT
*
1234055 GCTCCAAAAGCAGGAGTGCTCGAA
1 GCTCCAAAAGCAGGAGTGCTTGAA
* * *
1234079 CCCCCAAATGCAGGAGTGCTTGAA
1 GCTCCAAAAGCAGGAGTGCTTGAA
* * * *
1234103 CCCCCAAATGCAGGAGTGCTGGAA
1 GCTCCAAAAGCAGGAGTGCTTGAA
* *
1234127 G-TGCCAAAAGCAGGTGTGCTTGAT
1 GCT-CCAAAAGCAGGAGTGCTTGAA
1234151 GCTCCAAA
1 GCTCCAAA
1234159 TGTGCCACCT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
24 66 0.99
25 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.28, T:0.16
Consensus pattern (24 bp):
GCTCCAAAAGCAGGAGTGCTTGAA
Found at i:1234158 original size:48 final size:48
Alignment explanation
Indices: 1234052--1234160 Score: 128
Period size: 48 Copynumber: 2.3 Consensus size: 48
1234042 TGGACTTGAA
* *
1234052 GATGCTCCAAAAGCAGGAGTGCTCGAACCCCCAAATGCAGGAGTGCTT
1 GATGCTCCAAATGCAGGAGTGCTCGAACCCCCAAAAGCAGGAGTGCTT
** * * *** *
1234100 GAACCCCCAAATGCAGGAGTGCTGGAAGTGCCAAAAGCAGGTGTGCTT
1 GATGCTCCAAATGCAGGAGTGCTCGAACCCCCAAAAGCAGGAGTGCTT
1234148 GATGCTCCAAATG
1 GATGCTCCAAATG
1234161 TGCCACCTGT
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.29, C:0.25, G:0.28, T:0.17
Consensus pattern (48 bp):
GATGCTCCAAATGCAGGAGTGCTCGAACCCCCAAAAGCAGGAGTGCTT
Found at i:1234267 original size:24 final size:24
Alignment explanation
Indices: 1234240--1234401 Score: 189
Period size: 24 Copynumber: 6.8 Consensus size: 24
1234230 TTCCAGTTGA
* *
1234240 ACCAAAGGCAGGGGTGCTTGTGGC
1 ACCAAAGGCAGGGGTACTCGTGGC
* * * *
1234264 ACCAAAGGCTGGAGTACTCATGGA
1 ACCAAAGGCAGGGGTACTCGTGGC
* *
1234288 ACCAAAGGCAGGGGTACTTGTGCC
1 ACCAAAGGCAGGGGTACTCGTGGC
* *
1234312 ACCAAAAGCAGGGGCACTCGTGGC
1 ACCAAAGGCAGGGGTACTCGTGGC
*
1234336 ACCAAAGGCAGGGGTACTTGTGGC
1 ACCAAAGGCAGGGGTACTCGTGGC
* *
1234360 ACCAAAAGCAGGGGTGCTCGTGGC
1 ACCAAAGGCAGGGGTACTCGTGGC
* *
1234384 ACCGAAGGCAGGAGTACT
1 ACCAAAGGCAGGGGTACT
1234402 GGAACCAAAA
Statistics
Matches: 112, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 112 1.00
ACGTcount: A:0.27, C:0.23, G:0.35, T:0.14
Consensus pattern (24 bp):
ACCAAAGGCAGGGGTACTCGTGGC
Found at i:1234275 original size:48 final size:48
Alignment explanation
Indices: 1234217--1234368 Score: 159
Period size: 48 Copynumber: 3.2 Consensus size: 48
1234207 TCCAGTGCTC
* * *
1234217 CCAAATGCTGGACTTCCAGTTGAACCAAAGGCAGGGGTGCTTGTGGCA
1 CCAAAAGCTGGACTTCCAGTGGAACCAAAGGCAGGGGTACTTGTGGCA
* * * *
1234265 CCAAAGGCTGGAGTACTCA-TGGAACCAAAGGCAGGGGTACTTGTGCCA
1 CCAAAAGCTGGACTTC-CAGTGGAACCAAAGGCAGGGGTACTTGTGGCA
* *
1234313 CCAAAAGCAGGGGCAC-T-C-GTGGCACCAAAGGCAGGGGTACTTGTGGCA
1 CCAAAAGC--TGG-ACTTCCAGTGGAACCAAAGGCAGGGGTACTTGTGGCA
1234361 CCAAAAGC
1 CCAAAAGC
1234369 AGGGGTGCTC
Statistics
Matches: 87, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
48 82 0.94
49 2 0.02
50 2 0.02
51 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.32, T:0.16
Consensus pattern (48 bp):
CCAAAAGCTGGACTTCCAGTGGAACCAAAGGCAGGGGTACTTGTGGCA
Found at i:1234369 original size:48 final size:48
Alignment explanation
Indices: 1234240--1234401 Score: 225
Period size: 48 Copynumber: 3.4 Consensus size: 48
1234230 TTCCAGTTGA
* * * * * *
1234240 ACCAAAGGCAGGGGTGCTTGTGGCACCAAAGGCTGGAGTACTCATGGA
1 ACCAAAGGCAGGGGTACTTGTGGCACCAAAAGCAGGGGTACTCGTGGC
* *
1234288 ACCAAAGGCAGGGGTACTTGTGCCACCAAAAGCAGGGGCACTCGTGGC
1 ACCAAAGGCAGGGGTACTTGTGGCACCAAAAGCAGGGGTACTCGTGGC
*
1234336 ACCAAAGGCAGGGGTACTTGTGGCACCAAAAGCAGGGGTGCTCGTGGC
1 ACCAAAGGCAGGGGTACTTGTGGCACCAAAAGCAGGGGTACTCGTGGC
* *
1234384 ACCGAAGGCAGGAGTACT
1 ACCAAAGGCAGGGGTACT
1234402 GGAACCAAAA
Statistics
Matches: 101, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 101 1.00
ACGTcount: A:0.27, C:0.23, G:0.35, T:0.14
Consensus pattern (48 bp):
ACCAAAGGCAGGGGTACTTGTGGCACCAAAAGCAGGGGTACTCGTGGC
Found at i:1237536 original size:25 final size:25
Alignment explanation
Indices: 1237507--1237556 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
1237497 CAAAATGAAC
1237507 TTAGTTGATATAATAATGGTACTTT
1 TTAGTTGATATAATAATGGTACTTT
1237532 TTAGTTGATATAATAATGGTACTTT
1 TTAGTTGATATAATAATGGTACTTT
1237557 ATTACCTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (25 bp):
TTAGTTGATATAATAATGGTACTTT
Found at i:1250114 original size:17 final size:17
Alignment explanation
Indices: 1250081--1250114 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1250071 ATGGACCTCT
*
1250081 TTAAAAAAAATTCAAAA
1 TTAAAAAAAATTAAAAA
*
1250098 TTAAAAAAAGTTAAAAA
1 TTAAAAAAAATTAAAAA
1250115 AAAGTCAGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (17 bp):
TTAAAAAAAATTAAAAA
Found at i:1271898 original size:6 final size:6
Alignment explanation
Indices: 1271889--1271914 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
1271879 ATGATGATGG
1271889 TCACCA TCACCA TCACCA TCACCA TC
1 TCACCA TCACCA TCACCA TCACCA TC
1271915 CCTTTCTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.50, G:0.00, T:0.19
Consensus pattern (6 bp):
TCACCA
Found at i:1272954 original size:19 final size:18
Alignment explanation
Indices: 1272932--1273011 Score: 65
Period size: 19 Copynumber: 4.3 Consensus size: 18
1272922 AATAATTTTT
*
1272932 AAAATTTAACATATTTATA
1 AAAATTTAA-AAATTTATA
1272951 AAAATTTAAAAATTTATA
1 AAAATTTAAAAATTTATA
**
1272969 TATATTTTTAAAAA-TTATA
1 -A-AAATTTAAAAATTTATA
*
1272988 AATATTCTAAAAATTCTA-A
1 AAAATT-TAAAAATT-TATA
1273007 AAAAT
1 AAAAT
1273012 ACATAAAGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
17 4 0.08
18 15 0.29
19 21 0.41
20 11 0.22
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAATTTAAAAATTTATA
Found at i:1272973 original size:28 final size:28
Alignment explanation
Indices: 1272932--1272989 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
1272922 AATAATTTTT
1272932 AAAATTTAACATATTTATAAAAATT-TA
1 AAAATTTAACATATTTATAAAAATTATA
* *
1272959 AAAATTTATATATATTTTTAAAAATTATA
1 AAAATTTA-ACATATTTATAAAAATTATA
1272988 AA
1 AA
1272990 TATTCTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 8 0.30
28 15 0.56
29 4 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (28 bp):
AAAATTTAACATATTTATAAAAATTATA
Found at i:1278391 original size:3 final size:3
Alignment explanation
Indices: 1278385--1278427 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
1278375 AATGATGATT
* *
1278385 ATC ATC ATC ATC ATC ATC ATC ATC -TCC ATC ACC ATC ACC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC AT-C ATC ATC ATC ATC ATC A
1278428 CCTTCTCTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 1 0.03
3 32 0.94
4 1 0.03
ACGTcount: A:0.33, C:0.40, G:0.00, T:0.28
Consensus pattern (3 bp):
ATC
Found at i:1282827 original size:16 final size:17
Alignment explanation
Indices: 1282794--1282829 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
1282784 AAAAGGATTG
*
1282794 ATTATTCAAATTTTAGA
1 ATTATTCAAATGTTAGA
1282811 ATTATTC-AATGTTAGA
1 ATTATTCAAATGTTAGA
1282827 ATT
1 ATT
1282830 TGGACCGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (17 bp):
ATTATTCAAATGTTAGA
Found at i:1285501 original size:19 final size:18
Alignment explanation
Indices: 1285482--1285532 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
1285472 AATTTATTAT
1285482 TTTTTATTATATTTAATA
1 TTTTTATTATATTTAATA
** *
1285500 TTTAAATT-TATTAAATA
1 TTTTTATTATATTTAATA
1285517 TTTTTATTGATATTTA
1 TTTTTATT-ATATTTA
1285533 TATGTAATTT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
17 14 0.56
18 6 0.24
19 5 0.20
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTTATTATATTTAATA
Found at i:1285502 original size:32 final size:33
Alignment explanation
Indices: 1285465--1285546 Score: 107
Period size: 32 Copynumber: 2.5 Consensus size: 33
1285455 ATTTTTAAAC
1285465 ATATTTAAATTTATTAT-TTTTTATT-ATATTT
1 ATATTTAAATTTATTATATTTTTATTGATATTT
1285496 AATATTTAAATTTATTAAATATTTTTATTGATATTT
1 -ATATTTAAATTTATT--ATATTTTTATTGATATTT
*
1285532 ATATGT-AATTTATTA
1 ATATTTAAATTTATTA
1285547 GTTTGTATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
32 16 0.36
34 10 0.22
35 13 0.29
36 6 0.13
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (33 bp):
ATATTTAAATTTATTATATTTTTATTGATATTT
Found at i:1288193 original size:36 final size:36
Alignment explanation
Indices: 1288153--1288229 Score: 154
Period size: 36 Copynumber: 2.1 Consensus size: 36
1288143 AAATAGAGAA
1288153 ATATCTTCGTTTTGATTTGTCATCCTTGCTTTGTTC
1 ATATCTTCGTTTTGATTTGTCATCCTTGCTTTGTTC
1288189 ATATCTTCGTTTTGATTTGTCATCCTTGCTTTGTTC
1 ATATCTTCGTTTTGATTTGTCATCCTTGCTTTGTTC
1288225 ATATC
1 ATATC
1288230 GGCCGGCCGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.13, C:0.19, G:0.13, T:0.55
Consensus pattern (36 bp):
ATATCTTCGTTTTGATTTGTCATCCTTGCTTTGTTC
Found at i:1288487 original size:27 final size:27
Alignment explanation
Indices: 1288455--1288524 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
1288445 GTCTTTGCAA
1288455 TTTGGTCACCAAACTTGATGCTTTCAT
1 TTTGGTCACCAAACTTGATGCTTTCAT
*
1288482 TTTGGTCAACAAACTTGATGCTTTCAT
1 TTTGGTCACCAAACTTGATGCTTTCAT
* *
1288509 TTTAGTCACCCAACTT
1 TTTGGTCACCAAACTT
1288525 TTAGGTCGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.40
Consensus pattern (27 bp):
TTTGGTCACCAAACTTGATGCTTTCAT
Found at i:1292625 original size:24 final size:24
Alignment explanation
Indices: 1292592--1292652 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
1292582 ATTTTCTTGA
* * * *
1292592 AAAATATTCAATCATTATTACTTC
1 AAAATTTTCAATCATAATCACATC
*
1292616 AAAATTTTCAATTATAATCACATC
1 AAAATTTTCAATCATAATCACATC
*
1292640 CAAATTTTCAATC
1 AAAATTTTCAATC
1292653 GCAATCATGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (24 bp):
AAAATTTTCAATCATAATCACATC
Found at i:1301724 original size:34 final size:35
Alignment explanation
Indices: 1301658--1301724 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
1301648 CAAACACCAG
* *
1301658 AAAATATTTTCCAGTAAATTATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
1301693 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
1301725 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:1307672 original size:4 final size:4
Alignment explanation
Indices: 1307663--1307693 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
1307653 TTCGAACTTC
1307663 AATT AATT AATT AATT AATT AATT AATT AAT
1 AATT AATT AATT AATT AATT AATT AATT AAT
1307694 AACTTGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:1309601 original size:28 final size:28
Alignment explanation
Indices: 1309570--1309625 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
1309560 AAAATTACAC
*
1309570 TTTAATCTAAAAAATAATATTAAT-TTAA
1 TTTAATCTAAAAAA-AATATAAATATTAA
* *
1309598 TTTAATTTTAAAAAAATATAAATATTAA
1 TTTAATCTAAAAAAAATATAAATATTAA
1309626 AATAGTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (28 bp):
TTTAATCTAAAAAAAATATAAATATTAA
Found at i:1323880 original size:18 final size:18
Alignment explanation
Indices: 1323829--1323880 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
1323819 GTATCAAAAT
1323829 AAATATCGAAACTAAATTA
1 AAATATC-AAACTAAATTA
* * *
1323848 AAATATTAAATTAAATATC
1 AAATATCAAACTAAAT-TA
1323867 AAA-ATCAAACTAAA
1 AAATATCAAACTAAA
1323881 ATATTTAACG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
18 17 0.63
19 10 0.37
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.27
Consensus pattern (18 bp):
AAATATCAAACTAAATTA
Found at i:1326025 original size:3 final size:3
Alignment explanation
Indices: 1326017--1326044 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
1326007 GCGGAAGCTA
1326017 GCG GCG GCG GCG GCG GCG GCG GCG GCG G
1 GCG GCG GCG GCG GCG GCG GCG GCG GCG G
1326045 TGGCTTCTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.68, T:0.00
Consensus pattern (3 bp):
GCG
Found at i:1328486 original size:150 final size:150
Alignment explanation
Indices: 1328215--1328667 Score: 834
Period size: 150 Copynumber: 3.0 Consensus size: 150
1328205 TTAAACGTAT
* *
1328215 TGAGAATAGCTCTACGGTTAAGGAAACTGCTGGAAACGACTGCAATGAAGACAGTGAGGATTTAA
1 TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA
* * *
1328280 GTCTAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTCGAACGTCAACTGAGGGAGAA
66 GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTAGAAGGTCAACTGAGGGAGAA
1328345 AGTCCCATGGTTGATGATTC
131 AGTCCCATGGTTGATGATTC
1328365 TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA
1 TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA
*
1328430 GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTAGAAGGTCAACTGTGGGAGAA
66 GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTAGAAGGTCAACTGAGGGAGAA
1328495 AGTCCCATGGTTGATGATTC
131 AGTCCCATGGTTGATGATTC
1328515 TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA
1 TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA
*
1328580 GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGATAGAAGGTCAACTGAGGGAGAA
66 GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTAGAAGGTCAACTGAGGGAGAA
*
1328645 AGTCCCATGGTTGATTATTC
131 AGTCCCATGGTTGATGATTC
1328665 TGA
1 TGA
1328668 TCGCCCTCCG
Statistics
Matches: 294, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
150 294 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (150 bp):
TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA
GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTAGAAGGTCAACTGAGGGAGAA
AGTCCCATGGTTGATGATTC
Found at i:1330851 original size:89 final size:89
Alignment explanation
Indices: 1330707--1330870 Score: 285
Period size: 89 Copynumber: 1.8 Consensus size: 89
1330697 AATGTCTTAT
*
1330707 TTACCTGTTTTTCAGTTTTTGTTCCTCGCTTTGCCATGCATTGATGGATAATTAGATATTAAGGT
1 TTACCTGTTTTTCAGTTTTTGTTCCTCGCTTTGCCATGCATGGATGGATAATTAGATATTAAGGT
1330772 GGGATTTAGAGCGTATGTGTCTTGG
66 -GGATTTAGAGCGTATGTGTCTTGG
* *
1330797 TTACCTGTTTTTCGGTTTTT-TTCCTCGCTTTGCCATGCATGGATGGATAATTAGATATTAATGT
1 TTACCTGTTTTTCAGTTTTTGTTCCTCGCTTTGCCATGCATGGATGGATAATTAGATATTAAGGT
1330861 GGATTTAGAG
66 GGATTTAGAG
1330871 TGTGTTTAGT
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
88 10 0.14
89 42 0.59
90 19 0.27
ACGTcount: A:0.20, C:0.13, G:0.23, T:0.44
Consensus pattern (89 bp):
TTACCTGTTTTTCAGTTTTTGTTCCTCGCTTTGCCATGCATGGATGGATAATTAGATATTAAGGT
GGATTTAGAGCGTATGTGTCTTGG
Found at i:1341242 original size:13 final size:13
Alignment explanation
Indices: 1341224--1341249 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1341214 ATCTACTTTG
1341224 ATTTTTTTATATA
1 ATTTTTTTATATA
1341237 ATTTTTTTATATA
1 ATTTTTTTATATA
1341250 TGGTTAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTTTTTATATA
Found at i:1347547 original size:16 final size:17
Alignment explanation
Indices: 1347524--1347579 Score: 73
Period size: 16 Copynumber: 3.5 Consensus size: 17
1347514 TAATAAAAAT
1347524 ATAATTTTATTATTTTA
1 ATAATTTTATTATTTTA
*
1347541 A-AATTTTATCATTTTA
1 ATAATTTTATTATTTTA
*
1347557 ATAA-TTTA-TATTTTT
1 ATAATTTTATTATTTTA
1347572 ATAATTTT
1 ATAATTTT
1347580 TAAAGGATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 9 0.26
16 22 0.65
17 3 0.09
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
ATAATTTTATTATTTTA
Found at i:1347555 original size:24 final size:24
Alignment explanation
Indices: 1347523--1347579 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
1347513 ATAATAAAAA
* *
1347523 TATAATTTTATTATTTTAAAATTT
1 TATAATTTTAATAATTTAAAATTT
* * *
1347547 TATCATTTTAATAATTTATATTTT
1 TATAATTTTAATAATTTAAAATTT
1347571 TATAATTTT
1 TATAATTTT
1347580 TAAAGGATAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
TATAATTTTAATAATTTAAAATTT
Found at i:1347602 original size:30 final size:32
Alignment explanation
Indices: 1347566--1347631 Score: 109
Period size: 30 Copynumber: 2.1 Consensus size: 32
1347556 AATAATTTAT
1347566 ATTTTTATAATTTTTAAAGGA-TAAAAT-TAA
1 ATTTTTATAATTTTTAAAGGACTAAAATATAA
*
1347596 ATTTTTATTATTTTTAAAGGACTAAAATATAA
1 ATTTTTATAATTTTTAAAGGACTAAAATATAA
1347628 ATTT
1 ATTT
1347632 ATTAATATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
30 20 0.61
31 6 0.18
32 7 0.21
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (32 bp):
ATTTTTATAATTTTTAAAGGACTAAAATATAA
Found at i:1353144 original size:11 final size:11
Alignment explanation
Indices: 1353130--1353154 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1353120 GCAGATGTTA
1353130 TGCGCTTTAAC
1 TGCGCTTTAAC
1353141 TGCGCTTTAAC
1 TGCGCTTTAAC
1353152 TGC
1 TGC
1353155 TAAGCCAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.28, G:0.20, T:0.36
Consensus pattern (11 bp):
TGCGCTTTAAC
Found at i:1358750 original size:23 final size:21
Alignment explanation
Indices: 1358690--1358752 Score: 56
Period size: 23 Copynumber: 2.9 Consensus size: 21
1358680 CCTGATCAGT
* *
1358690 ATACGACAGATAAGTGCCTGA
1 ATACGACACATAAGTGCCTAA
* *
1358711 A-ACGACACACGAGGTGCCTAAA
1 ATACGACACA-TAAGTGCCT-AA
1358733 ATACGACACATAAAGTGCCT
1 ATACGACACAT-AAGTGCCT
1358753 GATTAGTATA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
20 7 0.22
21 8 0.25
22 2 0.06
23 15 0.47
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.16
Consensus pattern (21 bp):
ATACGACACATAAGTGCCTAA
Found at i:1367350 original size:15 final size:16
Alignment explanation
Indices: 1367314--1367347 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
1367304 ATAAATTTAG
1367314 TTTT-TATTATTATTT
1 TTTTGTATTATTATTT
*
1367329 TTTTGTATTTTTATTT
1 TTTTGTATTATTATTT
1367345 TTT
1 TTT
1367348 GTAACTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTTGTATTATTATTT
Found at i:1367498 original size:26 final size:27
Alignment explanation
Indices: 1367447--1367508 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 27
1367437 ATTTCATATT
*
1367447 AATT-TTTCAAATTGTTTATATATTTTG
1 AATTATTT-AAATTGTTTATATATTTTA
*
1367474 AA-TATTTAAATTTTTTATA-ATTTTTA
1 AATTATTTAAATTGTTTATATA-TTTTA
1367500 AATTATTTA
1 AATTATTTA
1367509 TTGATATGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
25 1 0.03
26 18 0.60
27 11 0.37
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (27 bp):
AATTATTTAAATTGTTTATATATTTTA
Found at i:1368041 original size:22 final size:21
Alignment explanation
Indices: 1367999--1368042 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
1367989 ATTAAAAATT
* *
1367999 ATATTTAAATTTATTTATAAA
1 ATATATAAATTTAATTATAAA
1368020 ATATATAAATATTAATTATAAA
1 ATATATAAAT-TTAATTATAAA
1368042 A
1 A
1368043 CTAATTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATATATAAATTTAATTATAAA
Found at i:1368973 original size:67 final size:70
Alignment explanation
Indices: 1368862--1368995 Score: 229
Period size: 67 Copynumber: 2.0 Consensus size: 70
1368852 TTTTATTGTA
1368862 TTTTTTTTTTCAATTATAAAAAGAAGTTAAAAAAGCCATAATTTGAGTAAATTGCATAGTGACTC
1 TTTTTTTTTTCAATTATAAAAAGAAGTTAAAAAAGCCATAATTTGAGTAAATTGCATAGTGACTC
1368927 CATTG
66 CATTG
* *
1368932 TTTTTTTTTTCAATTA-AAAAA-AAGTT-ATAAAGCCATAATTTGAGTAAATTGCATAGTGATTC
1 TTTTTTTTTTCAATTATAAAAAGAAGTTAAAAAAGCCATAATTTGAGTAAATTGCATAGTGACTC
1368994 CA
66 CA
1368996 ATCTATCGTA
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
67 36 0.58
68 5 0.08
69 5 0.08
70 16 0.26
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.40
Consensus pattern (70 bp):
TTTTTTTTTTCAATTATAAAAAGAAGTTAAAAAAGCCATAATTTGAGTAAATTGCATAGTGACTC
CATTG
Found at i:1370513 original size:11 final size:11
Alignment explanation
Indices: 1370493--1370522 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
1370483 GTCTAGTTTT
*
1370493 TTCTTGATTTA
1 TTCTTAATTTA
1370504 TTCTTAATTTA
1 TTCTTAATTTA
1370515 TTCTTAAT
1 TTCTTAAT
1370523 GATTTGACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.63
Consensus pattern (11 bp):
TTCTTAATTTA
Found at i:1371245 original size:29 final size:30
Alignment explanation
Indices: 1371185--1371251 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
1371175 AAAGTTAGAC
*
1371185 CTAAATTTTAAAATCTACAAAGTAAAGTGA
1 CTAAATTTTAAAATATACAAAGTAAAGTGA
1371215 CTAAATTCTTAAAA-ATA-AAAGTACAAG-GA
1 CTAAATT-TTAAAATATACAAAGTA-AAGTGA
1371244 CTAAATTT
1 CTAAATTT
1371252 CAAATTTATC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
28 1 0.03
29 15 0.44
30 12 0.35
31 6 0.18
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.30
Consensus pattern (30 bp):
CTAAATTTTAAAATATACAAAGTAAAGTGA
Found at i:1377385 original size:33 final size:33
Alignment explanation
Indices: 1377348--1377413 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
1377338 AGCAGCCATT
1377348 GGAGGTCTCTCTGATAGTAGTGAAAGTAGGTGA
1 GGAGGTCTCTCTGATAGTAGTGAAAGTAGGTGA
1377381 GGAGGTCTCTCTGATAGTAGTGAAAGTAGGTGA
1 GGAGGTCTCTCTGATAGTAGTGAAAGTAGGTGA
1377414 TAGATGACTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.27
Consensus pattern (33 bp):
GGAGGTCTCTCTGATAGTAGTGAAAGTAGGTGA
Found at i:1378530 original size:29 final size:30
Alignment explanation
Indices: 1378487--1378550 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
1378477 TAACTTAACA
1378487 AACAAATGCCGTTAAAATAA-AAAAAAATT
1 AACAAATGCCGTTAAAATAATAAAAAAATT
* * *
1378516 AACAAATGCCTTTAAAATAATAACAAACTT
1 AACAAATGCCGTTAAAATAATAAAAAAATT
1378546 AACAA
1 AACAA
1378551 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 19 0.61
30 12 0.39
ACGTcount: A:0.59, C:0.14, G:0.05, T:0.22
Consensus pattern (30 bp):
AACAAATGCCGTTAAAATAATAAAAAAATT
Found at i:1402390 original size:43 final size:43
Alignment explanation
Indices: 1402337--1402423 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
1402327 TAAAATGCCT
* * * *
1402337 AAAATTATTGATAGGTTTTCTCAAACCCTTAAATAAGAGGATA
1 AAAACTATTGATAGGTTCTCTCAAACCCCTAAATAAAAGGATA
1402380 AAAACTATTGATAGGTTCTCTCAAACCCCTAAATAAAAGGATA
1 AAAACTATTGATAGGTTCTCTCAAACCCCTAAATAAAAGGATA
1402423 A
1 A
1402424 TGCACTTCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.29
Consensus pattern (43 bp):
AAAACTATTGATAGGTTCTCTCAAACCCCTAAATAAAAGGATA
Found at i:1405005 original size:3 final size:3
Alignment explanation
Indices: 1404997--1405028 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
1404987 AAAGCTGTGG
1404997 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1405029 TTTTTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:1408855 original size:53 final size:53
Alignment explanation
Indices: 1408699--1408864 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
1408689 GACGAAAAAT
* **
1408699 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1408751 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
1408804 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
1408858 TATGTGA
1 -ATGTGA
1408865 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:1410114 original size:51 final size:51
Alignment explanation
Indices: 1410038--1410251 Score: 340
Period size: 51 Copynumber: 4.2 Consensus size: 51
1410028 ACACTGATCA
1410038 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1410089 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1410139 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
* * * * * * *
1410190 TACTTGTCACTTATCACTGATCAAATAAGTGTAGCTGAGGCTACCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
* *
1410241 CACTTGTCACT
1 CATTTATCACT
1410252 GATTAGAAGT
Statistics
Matches: 154, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
50 50 0.32
51 104 0.68
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (51 bp):
CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
Found at i:1410209 original size:101 final size:102
Alignment explanation
Indices: 1410038--1410251 Score: 349
Period size: 101 Copynumber: 2.1 Consensus size: 102
1410028 ACACTGATCA
* *
1410038 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCATTTATCACTTGT
1 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
*
1410103 CACTGATCAGATAAGTGTAGCT-AAGCTACCACTTAT
66 CACTGATCAAATAAGTGTAGCTGAAGCTACCACTTAT
* *
1410139 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATTACTTGTCACTTAT
1 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
*
1410204 CACTGATCAAATAAGTGTAGCTGAGGCTACCACTTAT
66 CACTGATCAAATAAGTGTAGCTGAAGCTACCACTTAT
* *
1410241 CACTTGTCACT
1 CATTTATCACT
1410252 GATTAGAAGT
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
101 82 0.79
102 22 0.21
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (102 bp):
CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
CACTGATCAAATAAGTGTAGCTGAAGCTACCACTTAT
Found at i:1417925 original size:51 final size:51
Alignment explanation
Indices: 1417866--1418092 Score: 211
Period size: 51 Copynumber: 4.2 Consensus size: 51
1417856 CTGATCACAT
1417866 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * *
1417917 TTATCACTTGTCACTGATCAGATAAGTGGTAGCTTAGATAAGTGTAGCTAAGCTACCACTTATCA
1 TTATCACTTGTCACTGATCAGATAAGT-GTAGC-T--A-AAG-CTA-C-CA-CT--TA----TCA
*
1417982 T
51 C
*
1417983 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATTAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
** * * * *
1418034 TCGTCACTTATCACTGATCAGATAAGTGTAGTTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
1418085 TTGTCACT
1 TTATCACT
1418093 GATCAGAAGT
Statistics
Matches: 144, Mismatches: 17, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
51 80 0.56
52 5 0.03
53 1 0.01
55 2 0.01
56 3 0.02
57 4 0.03
58 2 0.01
59 2 0.01
60 4 0.03
61 3 0.02
62 2 0.01
64 1 0.01
65 5 0.03
66 30 0.21
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:1417965 original size:15 final size:16
Alignment explanation
Indices: 1417936--1417965 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1417926 GTCACTGATC
1417936 AGATAAGTGGTAGCTT
1 AGATAAGTGGTAGCTT
1417952 AGATAAGT-GTAGCT
1 AGATAAGTGGTAGCT
1417966 AAGCTACCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (16 bp):
AGATAAGTGGTAGCTT
Found at i:1417992 original size:66 final size:66
Alignment explanation
Indices: 1417885--1418015 Score: 237
Period size: 66 Copynumber: 2.0 Consensus size: 66
1417875 GTCACTGATC
1417885 AGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGGTAGC
1 AGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGT-GTAGC
1417950 TT
65 TT
*
1417952 AGATAAGTGTAGCT-AAGCTACCACTTATCATTTATCACTTGTCACTGATCAGATAAGTGTAGCT
1 AGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCT
1418016 AAAGCTACCA
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
65 6 0.10
66 43 0.68
67 14 0.22
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (66 bp):
AGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCT
T
Found at i:1424820 original size:20 final size:20
Alignment explanation
Indices: 1424797--1424837 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
1424787 AGTATACAAC
1424797 ATGCAATAAAAATATATTGT
1 ATGCAATAAAAATATATTGT
*
1424817 ATGCAATAACAATATATTGT
1 ATGCAATAAAAATATATTGT
1424837 A
1 A
1424838 ATATGTTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (20 bp):
ATGCAATAAAAATATATTGT
Found at i:1427958 original size:31 final size:31
Alignment explanation
Indices: 1427923--1427985 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
1427913 TCCCTAAACC
*
1427923 TGGCAATTG-TCCTCACATTGGAGCTTGAGCT
1 TGGCAATTGTTCCT-ACATTGGAGCATGAGCT
*
1427954 TGGCAATTGTTCCTACATTGGGGCATGAGCT
1 TGGCAATTGTTCCTACATTGGAGCATGAGCT
1427985 T
1 T
1427986 TAGGATTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 25 0.86
32 4 0.14
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (31 bp):
TGGCAATTGTTCCTACATTGGAGCATGAGCT
Found at i:1430328 original size:33 final size:33
Alignment explanation
Indices: 1430286--1430353 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
1430276 ACAAAACATA
* *
1430286 TACGAAGTTCTCGAATCCTAACTGTTGACCTAG
1 TACGAAGTTCTCGAATCCTAACTCTTGACCAAG
*
1430319 TACGAAGTTCTCGAATTCTAACTCTTGACCAAG
1 TACGAAGTTCTCGAATCCTAACTCTTGACCAAG
1430352 TA
1 TA
1430354 GCATTGGGCG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (33 bp):
TACGAAGTTCTCGAATCCTAACTCTTGACCAAG
Found at i:1432850 original size:20 final size:20
Alignment explanation
Indices: 1432811--1432850 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
1432801 TGATAACGTT
*
1432811 TTGTATATATAATATTTAGA
1 TTGTATATATAACATTTAGA
1432831 TTGTATA-ATAACATTATAGA
1 TTGTATATATAACATT-TAGA
1432851 ATGGCACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.45
Consensus pattern (20 bp):
TTGTATATATAACATTTAGA
Found at i:1433181 original size:38 final size:39
Alignment explanation
Indices: 1433123--1433198 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 39
1433113 TGTTATATAT
*
1433123 TTTTATTAATTCATATTTTAATAATAATTATATTAAAAA
1 TTTTATTAATTCATATTTTAATAATAATCATATTAAAAA
*
1433162 TTTTATTAAATT-ATA-TTTAATAATAATCCTATTAAAA
1 TTTTATT-AATTCATATTTTAATAATAATCATATTAAAA
1433199 TTTAATAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 20 0.59
39 10 0.29
40 4 0.12
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (39 bp):
TTTTATTAATTCATATTTTAATAATAATCATATTAAAAA
Found at i:1436634 original size:10 final size:10
Alignment explanation
Indices: 1436611--1436645 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
1436601 CAATTTAAAC
*
1436611 TTTTTTTATCA
1 TTTTTATAT-A
1436622 TTTTTATATA
1 TTTTTATATA
1436632 TTTTTATATA
1 TTTTTATATA
1436642 TTTT
1 TTTT
1436646 ATTTATTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 15 0.65
11 8 0.35
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTTTATATA
Found at i:1436637 original size:19 final size:19
Alignment explanation
Indices: 1436613--1436652 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
1436603 ATTTAAACTT
1436613 TTTTTATCAT-TTTTATATA
1 TTTTTAT-ATATTTTATATA
*
1436632 TTTTTATATATTTTATTTA
1 TTTTTATATATTTTATATA
1436651 TT
1 TT
1436653 ATAAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTTATATATTTTATATA
Found at i:1438221 original size:20 final size:21
Alignment explanation
Indices: 1438193--1438231 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
1438183 TTTATCATCC
*
1438193 TAATAATTTTTCTATAATAAT
1 TAATAATTTTTCTAAAATAAT
1438214 TAAT-ATTTTTCTAAAATA
1 TAATAATTTTTCTAAAATA
1438232 TAAATGATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (21 bp):
TAATAATTTTTCTAAAATAAT
Found at i:1438387 original size:33 final size:33
Alignment explanation
Indices: 1438338--1438417 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
1438328 TAATAACAGA
* *
1438338 ATTTAACCCCTCTTTTTTCCTCTTCAATTTGAG
1 ATTTAACCCTTTTTTTTTCCTCTTCAATTTGAG
1438371 ATTTAACCCTTTTTTTTTCCTCTTCAATTTGAG
1 ATTTAACCCTTTTTTTTTCCTCTTCAATTTGAG
*
1438404 ATTTAACTCTTTTT
1 ATTTAACCCTTTTT
1438418 AACTGATTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.19, C:0.23, G:0.05, T:0.54
Consensus pattern (33 bp):
ATTTAACCCTTTTTTTTTCCTCTTCAATTTGAG
Found at i:1443584 original size:42 final size:43
Alignment explanation
Indices: 1443514--1443598 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 43
1443504 AATTTATCTT
* *
1443514 GATGTAATTCTTTTTTGTTTTAAAAAAAATAAAAGAAAAAGAA
1 GATGTAATTCTTTTTCGTCTTAAAAAAAATAAAAGAAAAAGAA
*
1443557 GATGTAATTCTTTTTCGTCTT-AAAAAAATAAGAGAAAAAGAA
1 GATGTAATTCTTTTTCGTCTTAAAAAAAATAAAAGAAAAAGAA
1443599 CATTCTCTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 20 0.51
43 19 0.49
ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33
Consensus pattern (43 bp):
GATGTAATTCTTTTTCGTCTTAAAAAAAATAAAAGAAAAAGAA
Found at i:1443888 original size:5 final size:5
Alignment explanation
Indices: 1443878--1443903 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
1443868 AACCACTGTG
1443878 AATAA AATAA AATAA AATAA AATAA A
1 AATAA AATAA AATAA AATAA AATAA A
1443904 GAACTCTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:1445836 original size:31 final size:34
Alignment explanation
Indices: 1445794--1445869 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 34
1445784 AATAGTTTAT
1445794 ATTTTTA-TATTTTTTAAAAGA-TTAAA-T-TAA
1 ATTTTTATTATTTTTTAAAAGACTTAAAGTATAA
*
1445824 ATTTTTATTA-TTTTTAAGAGACTTAAAGTATAA
1 ATTTTTATTATTTTTTAAAAGACTTAAAGTATAA
*
1445857 CTTTATTATTATT
1 ATTT-TTATTATT
1445870 AATTTAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
30 17 0.45
31 7 0.18
32 1 0.03
33 6 0.16
34 6 0.16
35 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (34 bp):
ATTTTTATTATTTTTTAAAAGACTTAAAGTATAA
Found at i:1450260 original size:13 final size:13
Alignment explanation
Indices: 1450242--1450267 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1450232 TTGACAATGA
1450242 TTTTAAAAAGTAC
1 TTTTAAAAAGTAC
1450255 TTTTAAAAAGTAC
1 TTTTAAAAAGTAC
1450268 AGTGAAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
TTTTAAAAAGTAC
Found at i:1450802 original size:18 final size:18
Alignment explanation
Indices: 1450779--1450823 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
1450769 AGCTTTTCTT
1450779 CCAGAAGTGCTTTTGGAG
1 CCAGAAGTGCTTTTGGAG
1450797 CCAGAAGTGCTTTTGGAG
1 CCAGAAGTGCTTTTGGAG
1450815 CCAGAAGTG
1 CCAGAAGTG
1450824 GCCCTAAGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.24
Consensus pattern (18 bp):
CCAGAAGTGCTTTTGGAG
Found at i:1451521 original size:16 final size:15
Alignment explanation
Indices: 1451500--1451534 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
1451490 AATTTTAATT
1451500 TTAATTTTAATTTGA
1 TTAATTTTAATTTGA
1451515 GTTAATTTTAATTTGA
1 -TTAATTTTAATTTGA
1451531 TTAA
1 TTAA
1451535 ACTTTGCTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (15 bp):
TTAATTTTAATTTGA
Found at i:1453875 original size:22 final size:25
Alignment explanation
Indices: 1453849--1453918 Score: 101
Period size: 22 Copynumber: 2.8 Consensus size: 25
1453839 TGGACATCAA
1453849 CTCAGAGAAAGGCTCGATTA-G-G-
1 CTCAGAGAAAGGCTCGATTACGCGC
1453871 CTCAGAGAAAGGCTCGATTAGTCGCGC
1 CTCAGAGAAAGGCTCGATTA--CGCGC
1453898 CTCAGAGAAAGGCTCGATTAC
1 CTCAGAGAAAGGCTCGATTAC
1453919 TGTTCTGAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
22 20 0.47
25 2 0.05
26 1 0.02
27 20 0.47
ACGTcount: A:0.30, C:0.23, G:0.29, T:0.19
Consensus pattern (25 bp):
CTCAGAGAAAGGCTCGATTACGCGC
Found at i:1454609 original size:18 final size:18
Alignment explanation
Indices: 1454582--1454617 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
1454572 ATTTTTAGAA
1454582 AAATGAAAATA-TTAATT
1 AAATGAAAATATTTAATT
1454599 AAATAGAAAATATTTAATT
1 AAAT-GAAAATATTTAATT
1454618 TTTATTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (18 bp):
AAATGAAAATATTTAATT
Found at i:1458103 original size:25 final size:26
Alignment explanation
Indices: 1458062--1458110 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
1458052 CAACCATGCT
1458062 AATTTTTAATAATAAAAA-TAAATAA
1 AATTTTTAATAATAAAAATTAAATAA
*
1458087 AATTTTTAACTGA-AAAAATTAAAT
1 AATTTTTAA-TAATAAAAATTAAAT
1458111 TACTTTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (26 bp):
AATTTTTAATAATAAAAATTAAATAA
Found at i:1463758 original size:52 final size:52
Alignment explanation
Indices: 1463701--1463804 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
1463691 TTTCAGGGTA
1463701 TAATTCACTGTTACTTTTTGTTTAATGCAGTTATAACAAGTAGAAAGGAATT
1 TAATTCACTGTTACTTTTTGTTTAATGCAGTTATAACAAGTAGAAAGGAATT
1463753 TAATTCACTGTTACTTTTTGTTTAATGCAGTTATAACAAGTAGAAAGGAATT
1 TAATTCACTGTTACTTTTTGTTTAATGCAGTTATAACAAGTAGAAAGGAATT
1463805 CATTCTTTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (52 bp):
TAATTCACTGTTACTTTTTGTTTAATGCAGTTATAACAAGTAGAAAGGAATT
Found at i:1475318 original size:8 final size:8
Alignment explanation
Indices: 1475305--1475329 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
1475295 ATTTCTACAA
1475305 TTTAAAAT
1 TTTAAAAT
1475313 TTTAAAAT
1 TTTAAAAT
1475321 TTTAAAAT
1 TTTAAAAT
1475329 T
1 T
1475330 GGTATGGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTAAAAT
Found at i:1479860 original size:39 final size:38
Alignment explanation
Indices: 1479793--1479926 Score: 103
Period size: 39 Copynumber: 3.4 Consensus size: 38
1479783 ACCAATATGG
* *
1479793 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGTAATAGTTGA
* *
1479832 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGTAATAGTTGA
* * * * *
1479870 TACCC-GTACCTCATCGAATCTATCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGTAATAGT--TGA
*
1479910 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
1479927 ACTCGAGGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
37 9 0.12
38 21 0.28
39 26 0.35
40 9 0.12
41 9 0.12
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGTAATAGTTGA
Found at i:1489545 original size:21 final size:21
Alignment explanation
Indices: 1489519--1489559 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1489509 ATCTGCTCAA
* *
1489519 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
1489540 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
1489560 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:1498950 original size:15 final size:15
Alignment explanation
Indices: 1498932--1498962 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1498922 GAAATAATTA
*
1498932 GTAAAAGAATAAAAG
1 GTAAAAGAAAAAAAG
1498947 GTAAAAGAAAAAAAG
1 GTAAAAGAAAAAAAG
1498962 G
1 G
1498963 ATTAAGAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.23, T:0.10
Consensus pattern (15 bp):
GTAAAAGAAAAAAAG
Found at i:1505656 original size:30 final size:29
Alignment explanation
Indices: 1505622--1505692 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
1505612 TTTTAAATTA
*
1505622 ATAAAATTATAATTTGATCCCCTAAAAATG
1 ATAAAATTATAA-TTAATCCCCTAAAAATG
** *
1505652 ATAAAAGTT-TAATTAATCCTTTAAAAATT
1 ATAAAA-TTATAATTAATCCCCTAAAAATG
*
1505681 ATAAAAATATAA
1 ATAAAATTATAA
1505693 GTTATTAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
28 1 0.03
29 22 0.65
30 9 0.26
31 2 0.06
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.35
Consensus pattern (29 bp):
ATAAAATTATAATTAATCCCCTAAAAATG
Found at i:1509452 original size:35 final size:35
Alignment explanation
Indices: 1509413--1509484 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
1509403 CATCTCCGGA
*
1509413 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
*
1509448 GCTTGGCAAATATGGAAGGGAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
1509483 GC
1 GC
1509485 GATCCTAGAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
Done.