Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 50 of 352
Found at i:16207311 original size:15 final size:15
Alignment explanation
Indices: 16207291--16207368 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
16207281 TTTATGGAAA
16207291 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
16207306 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
16207320 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* *
16207336 ATCAAATAT-TGGAAT
1 ATCAAAGATATGG-GT
*
16207351 GTCAAAGATATGGGT
1 ATCAAAGATATGGGT
16207366 ATC
1 ATC
16207369 GAGATATTGG
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 7 0.15
15 33 0.70
16 7 0.15
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:16207319 original size:30 final size:30
Alignment explanation
Indices: 16207285--16207378 Score: 152
Period size: 30 Copynumber: 3.1 Consensus size: 30
16207275 TCCATATTTA
*
16207285 TGGAAAATCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
16207315 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
* *
16207345 TGGAATGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
16207376 TGG
1 TGG
16207379 CATAATAAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
30 52 0.87
31 8 0.13
ACGTcount: A:0.40, C:0.06, G:0.26, T:0.28
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:16211967 original size:15 final size:15
Alignment explanation
Indices: 16211947--16212054 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
16211937 TTTATGGAAA
16211947 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
16211962 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
16211976 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
16211992 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
16212006 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
16212022 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
16212036 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
16212052 ATC
1 ATC
16212055 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 12 0.17
15 45 0.65
16 12 0.17
ACGTcount: A:0.43, C:0.07, G:0.23, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:16211975 original size:30 final size:30
Alignment explanation
Indices: 16211941--16212064 Score: 221
Period size: 30 Copynumber: 4.1 Consensus size: 30
16211931 TCCATATTTA
*
16211941 TGGAAAATCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
16211971 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
16212001 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
16212031 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
16212062 TGG
1 TGG
16212065 CATAATAAAA
Statistics
Matches: 91, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
30 83 0.91
31 8 0.09
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:16221854 original size:18 final size:18
Alignment explanation
Indices: 16221831--16221865 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
16221821 GTATGTTTTT
16221831 TAGTCTTATTTATGCAAG
1 TAGTCTTATTTATGCAAG
*
16221849 TAGTCTTATTTTTGCAA
1 TAGTCTTATTTATGCAA
16221866 TTGATTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.49
Consensus pattern (18 bp):
TAGTCTTATTTATGCAAG
Found at i:16226711 original size:3 final size:3
Alignment explanation
Indices: 16226703--16226730 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
16226693 AAAGGGTTTA
16226703 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
16226731 TAGATATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:16235247 original size:15 final size:15
Alignment explanation
Indices: 16235220--16235265 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
16235210 TTTTGCCCGG
16235220 GCTAAAAAGCCCAACA
1 GCTAAAAA-CCCAACA
*
16235236 TCTAAAAACCCAACA
1 GCTAAAAACCCAACA
**
16235251 GCCCAAAACCCAACA
1 GCTAAAAACCCAACA
16235266 ACCTCCAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.50, C:0.37, G:0.07, T:0.07
Consensus pattern (15 bp):
GCTAAAAACCCAACA
Found at i:16235286 original size:17 final size:17
Alignment explanation
Indices: 16235240--16235280 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
16235230 CCAACATCTA
*
16235240 AAAACCCAAC-AGC-CC
1 AAAACCCAACAACCTCC
16235255 AAAACCCAACAACCTCC
1 AAAACCCAACAACCTCC
*
16235272 AAAGCCCAA
1 AAAACCCAA
16235281 TCACCTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 10 0.45
16 2 0.09
17 10 0.45
ACGTcount: A:0.49, C:0.44, G:0.05, T:0.02
Consensus pattern (17 bp):
AAAACCCAACAACCTCC
Found at i:16235777 original size:19 final size:18
Alignment explanation
Indices: 16235740--16235781 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
16235730 GGAGAGAGTG
*
16235740 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
16235758 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
16235777 TTATT
1 TTATT
16235782 ACTAATACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:16235840 original size:33 final size:38
Alignment explanation
Indices: 16235766--16235847 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
16235756 TATTATTTTC
*
16235766 TATTATTATTATTATTACTAATACTACTATTATCATCAT
1 TATTACTATTATTATTACTAATAC-ACTATTATCATCAT
*
16235805 TATTACTATTA-TATTA-TAATAC-CT-TT-TCATTAT
1 TATTACTATTATTATTACTAATACACTATTATCATCAT
16235838 TATTACTATT
1 TATTACTATT
16235848 GTGTTTTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 2 0.05
37 6 0.15
38 5 0.12
39 10 0.24
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.54
Consensus pattern (38 bp):
TATTACTATTATTATTACTAATACACTATTATCATCAT
Found at i:16245551 original size:206 final size:206
Alignment explanation
Indices: 16245187--16245852 Score: 1078
Period size: 206 Copynumber: 3.3 Consensus size: 206
16245177 GATCTGGCTA
*
16245187 AAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
*
16245251 TTGACTTTCGCGTGCTTACGCTAAAGT-AAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
66 TTGGCTTTCGCGTGCTTACGCTAAA-TCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
* * *
16245315 AACAAGTCAAAGTCTGGCATCTCTATTTCGACGGAGAGCAGATACATAGCAGATCCGGCCTTCAG
130 AACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAG
16245380 ATGTTTATACTG
195 ATGTTTATACTG
*
16245392 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGGAGACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
*
16245457 TTGGCTTTCGCGTGCTTACGCTAAATCAAGTCTAAGATGATTTGGCATTTCTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAATCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
*
16245522 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTTAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
16245587 TGTTTATACTG
196 TGTTTATACTG
* * * *
16245598 AAGCAAGATCTAAGATGATTTGGCATCCTTGTGCTTACAAGAAGCAAATCGAAGATATAGCTAAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
* *
16245663 TTGGCTTTTGCATGCTTACG------CAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAATCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
*
16245722 ACAAGTCGAAGTCTGGCATCTCCATTTCGACAGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
* *
16245787 TGTTTTTACCG
196 TGTTTATACTG
* * * *
16245798 AAGCAAGATCTAAGATGATTTGGCATCCTTGTGCTTACAAAGAACAAATCTAAGA
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGA
16245853 AGCATATTTA
Statistics
Matches: 435, Mismatches: 24, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
200 161 0.37
205 5 0.01
206 269 0.62
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (206 bp):
AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
TTGGCTTTCGCGTGCTTACGCTAAATCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
TGTTTATACTG
Found at i:16246036 original size:45 final size:45
Alignment explanation
Indices: 16245940--16246036 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 45
16245930 AGATTGATGA
* * *
16245940 AGCAAATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGCATTAGACGAGGAGCAGATCAAAGAT
*
16245985 -GACAGATTTGGCGTCTCTGCATTAGACGGGGAGCAGATCAAAGAT
1 AG-CAGATTTGGCGTCTCTGCATTAGACGAGGAGCAGATCAAAGAT
16246030 AGCAGAT
1 AGCAGAT
16246037 ATCGCTTTCC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 1 0.02
45 44 0.96
46 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (45 bp):
AGCAGATTTGGCGTCTCTGCATTAGACGAGGAGCAGATCAAAGAT
Found at i:16246249 original size:15 final size:16
Alignment explanation
Indices: 16246223--16246252 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
16246213 TTTGCCTGGG
16246223 CTAAAAAGCCCAACAT
1 CTAAAAAGCCCAACAT
16246239 CTAAAAA-CCCAACA
1 CTAAAAAGCCCAACA
16246253 ACCTCCAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.33, G:0.03, T:0.10
Consensus pattern (16 bp):
CTAAAAAGCCCAACAT
Found at i:16246324 original size:13 final size:13
Alignment explanation
Indices: 16246306--16246386 Score: 80
Period size: 13 Copynumber: 6.5 Consensus size: 13
16246296 TCTTCACTCC
16246306 AACCACCCCACTA
1 AACCACCCCACTA
*
16246319 AACCACTCCACTA
1 AACCACCCCACTA
*
16246332 AACCA-CTC-C--
1 AACCACCCCACTA
*
16246341 AACCACCTCACTA
1 AACCACCCCACTA
16246354 AACCACCCCACTA
1 AACCACCCCACTA
*
16246367 AACCATCCCAACTA
1 AACCA-CCCCACTA
*
16246381 CACCAC
1 AACCAC
16246387 TTGCCTACAA
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
9 5 0.09
10 3 0.05
11 2 0.04
12 1 0.02
13 35 0.61
14 11 0.19
ACGTcount: A:0.38, C:0.51, G:0.00, T:0.11
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:16246378 original size:35 final size:35
Alignment explanation
Indices: 16246300--16246371 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
16246290 TAAATATCTT
*
16246300 CACTCCAACCACCCCACTAAACCACTCCACTAAAC
1 CACTCCAACCACCCCACTAAACCACCCCACTAAAC
*
16246335 CACTCCAACCACCTCACTAAACCACCCCACTAAAC
1 CACTCCAACCACCCCACTAAACCACCCCACTAAAC
16246370 CA
1 CA
16246372 TCCCAACTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.38, C:0.51, G:0.00, T:0.11
Consensus pattern (35 bp):
CACTCCAACCACCCCACTAAACCACCCCACTAAAC
Found at i:16246777 original size:10 final size:9
Alignment explanation
Indices: 16246748--16246787 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
16246738 GGAGAGAGTG
16246748 TTATTTTTA
1 TTATTTTTA
*
16246757 ATATTTTTA
1 TTATTTTTA
16246766 TTATTTTCTA
1 TTATTTT-TA
*
16246776 TTATTATTA
1 TTATTTTTA
16246785 TTA
1 TTA
16246788 CTAATATCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (9 bp):
TTATTTTTA
Found at i:16247120 original size:19 final size:17
Alignment explanation
Indices: 16247082--16247121 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
16247072 TGTTCGACTC
*
16247082 ATTTATCTTACATTCGT
1 ATTTATCTTACATTCAT
16247099 ATTTATCGTTACTATTCAT
1 ATTTATC-TTAC-ATTCAT
16247118 ATTT
1 ATTT
16247122 GTGTTTATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 4 0.20
19 9 0.45
ACGTcount: A:0.25, C:0.15, G:0.05, T:0.55
Consensus pattern (17 bp):
ATTTATCTTACATTCAT
Found at i:16249801 original size:28 final size:30
Alignment explanation
Indices: 16249752--16249832 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 30
16249742 GTTAAGAATG
16249752 TTAAAATTT-TGTAAAAATATATAGAAAGCTAT
1 TTAAAATTTAT-T-AAAA-ATATAGAAAGCTAT
* * * *
16249784 TT-TAATTTA-TGAAAATATAGATATCTAT
1 TTAAAATTTATTAAAAATATAGAAAGCTAT
16249812 TTAAAATTTATTAAAAATATA
1 TTAAAATTTATTAAAAATATA
16249833 CAAATTTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
28 14 0.35
29 9 0.22
30 10 0.25
31 5 0.12
32 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.42
Consensus pattern (30 bp):
TTAAAATTTATTAAAAATATAGAAAGCTAT
Found at i:16250623 original size:18 final size:19
Alignment explanation
Indices: 16250602--16250643 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
16250592 TTTAATTAAA
*
16250602 TTTAAATATTTTTC--TAT
1 TTTAAATAATTTTCAATAT
*
16250619 TTTTAATAATTTTCAATAT
1 TTTAAATAATTTTCAATAT
16250638 TTTAAA
1 TTTAAA
16250644 AAAATTCTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 12 0.60
19 8 0.40
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTAAATAATTTTCAATAT
Found at i:16273778 original size:27 final size:26
Alignment explanation
Indices: 16273726--16273778 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
16273716 TGGCTCCACC
* * **
16273726 AAATAAAAAAATAATTTCAATTTAAA
1 AAATAAAAAAATAACTTAAAAATAAA
16273752 AAATATAAAAAATAACTTAAAAATAAA
1 AAATA-AAAAAATAACTTAAAAATAAA
16273779 GTCTGACATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (26 bp):
AAATAAAAAAATAACTTAAAAATAAA
Found at i:16274333 original size:20 final size:20
Alignment explanation
Indices: 16274308--16274370 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
16274298 AAATAAAATG
16274308 AAATAATTTTAAAAAATTCA
1 AAATAATTTTAAAAAATTCA
**
16274328 AAATAATTTT-TTAAATTCA
1 AAATAATTTTAAAAAATTCA
*
16274347 AAAT-ATTTATAAAAATTTCA
1 AAATAATTT-TAAAAAATTCA
16274367 AAAT
1 AAAT
16274371 TTATATTTCA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 4 0.11
19 12 0.33
20 20 0.56
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (20 bp):
AAATAATTTTAAAAAATTCA
Found at i:16274377 original size:24 final size:25
Alignment explanation
Indices: 16274349--16274397 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
16274339 TAAATTCAAA
*
16274349 ATATTT-ATAAAAATT-TCAAAATTT
1 ATATTTCAAAAAAATTAT-AAAATTT
16274373 ATATTTCAAAAAAATTATAAAATTT
1 ATATTTCAAAAAAATTATAAAATTT
16274398 CTAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 6 0.27
25 15 0.68
26 1 0.05
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
ATATTTCAAAAAAATTATAAAATTT
Found at i:16278020 original size:19 final size:19
Alignment explanation
Indices: 16277971--16278022 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
16277961 AAAATTACAA
* *
16277971 AAAAATCAAAGTAATTTTT
1 AAAATTCAAAATAATTTTT
* *
16277990 AAATTTTGAAAATAATTTTT
1 AAA-ATTCAAAATAATTTTT
16278010 AAAATTCAAAATA
1 AAAATTCAAAATA
16278023 TTTGTAGAGA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:16283549 original size:15 final size:15
Alignment explanation
Indices: 16283531--16283568 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
16283521 AAATATAAAG
16283531 ATTAAAATT-AACCAA
1 ATTAAAATTGAA-CAA
*
16283546 ATTAAAATTGAAGAA
1 ATTAAAATTGAACAA
16283561 ATTAAAAT
1 ATTAAAAT
16283569 AAGATACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 19 0.90
16 2 0.10
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (15 bp):
ATTAAAATTGAACAA
Found at i:16284909 original size:13 final size:13
Alignment explanation
Indices: 16284891--16284915 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16284881 CTAGAATCCA
16284891 TTAAAAAATAACC
1 TTAAAAAATAACC
16284904 TTAAAAAATAAC
1 TTAAAAAATAAC
16284916 ATTAGTTAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (13 bp):
TTAAAAAATAACC
Found at i:16285868 original size:21 final size:20
Alignment explanation
Indices: 16285843--16285886 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
16285833 TTTTAGTAAA
16285843 AATATA-GAAAATTAATATTTT
1 AATATAGGAAAA-TAA-ATTTT
16285864 AATATATGGAAAATAAATTTT
1 AATATA-GGAAAATAAATTTT
16285885 AA
1 AA
16285887 ATTATTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 13 0.62
22 3 0.14
23 5 0.24
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39
Consensus pattern (20 bp):
AATATAGGAAAATAAATTTT
Found at i:16285875 original size:23 final size:21
Alignment explanation
Indices: 16285844--16285886 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
16285834 TTTAGTAAAA
16285844 ATATAGAAAATTAATATTTTAAT
1 ATATAGAAAA-TAA-ATTTTAAT
*
16285867 ATATGGAAAATAAATTTTAA
1 ATATAGAAAATAAATTTTAA
16285887 ATTATTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (21 bp):
ATATAGAAAATAAATTTTAAT
Found at i:16294623 original size:29 final size:29
Alignment explanation
Indices: 16294581--16294647 Score: 127
Period size: 29 Copynumber: 2.3 Consensus size: 29
16294571 TTTGTCAACA
16294581 AATTATGTTCATAGTTACATATAGAATTT
1 AATTATGTTCATAGTTACATATAGAATTT
16294610 AATTATGTTCATAGTTACATATAGAATTT
1 AATTATGTTCATAGTTACATATAGAATTT
16294639 AATT-TGTTC
1 AATTATGTTC
16294648 CTAACTGAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.46
Consensus pattern (29 bp):
AATTATGTTCATAGTTACATATAGAATTT
Found at i:16294660 original size:29 final size:29
Alignment explanation
Indices: 16294581--16294661 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
16294571 TTTGTCAACA
* *
16294581 AATTATGTTCATAGTTACATATAGAATTT
1 AATTATGTTCATACTGACATATAGAATTT
* *
16294610 AATTATGTTCATAGTTACATATAGAATTT
1 AATTATGTTCATACTGACATATAGAATTT
* *
16294639 AATT-TGTTCCTAACTGAGATATA
1 AATTATGTTCAT-ACTGACATATA
16294662 TATAGTGTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
28 6 0.13
29 41 0.87
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (29 bp):
AATTATGTTCATACTGACATATAGAATTT
Found at i:16299688 original size:31 final size:31
Alignment explanation
Indices: 16299653--16299733 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 31
16299643 AGAATATAAT
* * ** *
16299653 TTTTGGCCCCTAAATTTGGCAACTAGGTCCA
1 TTTTGGTCCCTAAAATTGGCAACTAAATACA
* *
16299684 TTTTGGTCCTTAAAATTGACAACTAAATACA
1 TTTTGGTCCCTAAAATTGGCAACTAAATACA
*
16299715 TTTTGGTCCCTAAACTTGG
1 TTTTGGTCCCTAAAATTGG
16299734 ATTCTATCAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTTGGTCCCTAAAATTGGCAACTAAATACA
Found at i:16301228 original size:34 final size:32
Alignment explanation
Indices: 16301156--16301229 Score: 78
Period size: 34 Copynumber: 2.2 Consensus size: 32
16301146 ATATTATATT
*
16301156 AATTATATATCAAATAATAATTATATATATTTA
1 AATT-TATATCAAATAATAATTATATATAATTA
* *
16301189 CATTTATATCAAATCACTAATTCA-ATAATAATTA
1 AATTTATATCAAAT-AATAATT-ATAT-ATAATTA
16301223 AATTTAT
1 AATTTAT
16301230 TATCTAAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
32 10 0.29
33 11 0.32
34 13 0.38
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (32 bp):
AATTTATATCAAATAATAATTATATATAATTA
Found at i:16305436 original size:30 final size:30
Alignment explanation
Indices: 16305370--16305444 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
16305360 TAGTGTAAAT
* *
16305370 TTTTATAATTTTTAAAAGATTAAATTAGAA
1 TTTTATTATTTTTAAAAGATTAAAATAGAA
* *
16305400 TTTTATTATTTTTAGAGAGA-TAAAATATAA
1 TTTTATTATTTTTA-AAAGATTAAAATAGAA
16305430 TTTTATT-TTTATTAA
1 TTTTATTATTT-TTAA
16305445 TTTAAAATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 4 0.10
30 31 0.79
31 4 0.10
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (30 bp):
TTTTATTATTTTTAAAAGATTAAAATAGAA
Found at i:16311602 original size:20 final size:20
Alignment explanation
Indices: 16311577--16311614 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
16311567 ATCTCTCTCC
16311577 ATTTTCAAATTATTCTAAAT
1 ATTTTCAAATTATTCTAAAT
16311597 ATTTTCAAATTATTCTAA
1 ATTTTCAAATTATTCTAA
16311615 GTTTTGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTTTCAAATTATTCTAAAT
Found at i:16320502 original size:6 final size:6
Alignment explanation
Indices: 16320491--16320534 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
16320481 CTTCAGCCTT
* * *
16320491 GGTGCC GGTGCC GGTGCC GGTGCC GGCGCC GGCGCC GGCGCC GG
1 GGTGCC GGTGCC GGTGCC GGTGCC GGTGCC GGTGCC GGTGCC GG
16320535 CGAGGGGCAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.00, C:0.39, G:0.52, T:0.09
Consensus pattern (6 bp):
GGTGCC
Found at i:16327015 original size:26 final size:26
Alignment explanation
Indices: 16326961--16327017 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
16326951 TTTTTATTTT
*
16326961 TATTTTTTAAAATATTTAAAATATTA
1 TATTTTTTAAAATATTTAAAATATCA
*
16326987 TATTTTTTAATAT-TATTAAACATA-CA
1 TATTTTTTAAAATAT-TTAAA-ATATCA
16327013 TATTT
1 TATTT
16327018 AATTATTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 1 0.04
26 23 0.85
27 3 0.11
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (26 bp):
TATTTTTTAAAATATTTAAAATATCA
Found at i:16331195 original size:177 final size:177
Alignment explanation
Indices: 16330468--16331194 Score: 981
Period size: 177 Copynumber: 4.1 Consensus size: 177
16330458 TTCGATCCCG
* * *
16330468 CTTAGGGAGAAAAGATCTGCAATTTTCAGTCTGTTTCCTTGCTACCTTAGGAAGATAAGACTTGT
1 CTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGT
* * * *
16330533 ATCTTCAACATGCTCTCGTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGTTCCATTGC
66 ATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGC
* ** * *
16330598 CGATACATGGAGACAAGATTTACCATCTTCGATCTACTCCACTACTG
131 CGATACATGGAGATAAGATTCGCCGTCTTCGATCTACTCCACTACTA
* *
16330645 CTTAGGGATATAAGATCTGCAATTTTCAGTCTGCTTCCTTGCTACCTCGGGAAGATAAGACTTGT
1 CTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGT
* * * * *
16330710 ATCTTCAACCCGCTCTCTTACTACCTCAGAGAGATAAGGTTGGTGGTTAAAATCTGCTCTC-TTA
66 ATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTC-CATTG
* * *
16330774 CTGATACATGGAGATAAGATCCGCCGTCTTCGATCTACTCCACTACTG
130 CCGATACATGGAGATAAGATTCGCCGTCTTCGATCTACTCCACTACTA
* * * * *
16330822 CTTAGAGAGATAAGATCTGCAATTTTCAGTTTACTTCCTTACTACCTCAGGAAGATAAAACTTGT
1 CTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGT
* *
16330887 ATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGATGGCTAAAATCTGCTCCATTGT
66 ATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGC
* * * * **
16330952 TGATACATGGAGATAAGA-TCTGCCGTATTTGATCTGCTCTGCTACTA
131 CGATACATGGAGATAAGATTC-GCCGTCTTCGATCTACTCCACTACTA
* * * * *
16330999 CTTAGGGAGATAAGATCTGTAGTTTTCAGTCTGTTTCCTTGCCACCTTAGGAAGATAAGACTTGT
1 CTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGT
* * * * * *
16331064 ATCTTCAACTTGCTCTCTTGTTATCTCAGAAAGATAAGGTTGGTAGCTAAAATCTGCTCCATTGC
66 ATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGC
*
16331129 CGATACATGGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTA
131 CGATACATGGAGATAAGATTCGCCGTCTTCGATCTACTCCACTACTA
* *
16331176 CTTAGAGAGACAAGATCTG
1 CTTAGGGAGATAAGATCTG
16331195 TGAATTCACA
Statistics
Matches: 480, Mismatches: 66, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
176 2 0.00
177 475 0.99
178 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (177 bp):
CTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTTGT
ATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTGC
CGATACATGGAGATAAGATTCGCCGTCTTCGATCTACTCCACTACTA
Found at i:16336749 original size:10 final size:10
Alignment explanation
Indices: 16336734--16336763 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
16336724 TAAAACTTGA
16336734 ATTTAAAATC
1 ATTTAAAATC
*
16336744 ATTTAAAATA
1 ATTTAAAATC
16336754 ATTTAAAATC
1 ATTTAAAATC
16336764 GTTAGTACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (10 bp):
ATTTAAAATC
Found at i:16343133 original size:9 final size:9
Alignment explanation
Indices: 16343112--16343142 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
16343102 TGTTTTGTTC
16343112 TATTTACTTT
1 TATTTA-TTT
16343122 TATTTATTT
1 TATTTATTT
16343131 TATTTATTT
1 TATTTATTT
16343140 TAT
1 TAT
16343143 AATAATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 15 0.71
10 6 0.29
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (9 bp):
TATTTATTT
Found at i:16343311 original size:15 final size:15
Alignment explanation
Indices: 16343291--16343340 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
16343281 ATAATATAAT
16343291 TATTTAATAAATATC
1 TATTTAATAAATATC
* * *
16343306 TATTTACTTAATA-A
1 TATTTAATAAATATC
*
16343320 TAATTAATAAATATC
1 TATTTAATAAATATC
16343335 TATTTA
1 TATTTA
16343341 CTTAAATAGT
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (15 bp):
TATTTAATAAATATC
Found at i:16356487 original size:23 final size:22
Alignment explanation
Indices: 16356461--16356512 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
16356451 CTTATATATG
16356461 TTTTTTTACTCTTA-TTATTAACA
1 TTTTTTTA-T-TTATTTATTAACA
*
16356484 TTTTATTTATTTATTTATTTACA
1 TTTT-TTTATTTATTTATTAACA
16356507 TTTTTT
1 TTTTTT
16356513 ATTATTATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.19
23 17 0.65
24 4 0.15
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTTTTTATTTATTTATTAACA
Found at i:16356520 original size:23 final size:23
Alignment explanation
Indices: 16356462--16356537 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
16356452 TTATATATGT
* * *
16356462 TTTTTTACTCTTA-TTATTAACA
1 TTTTTTATTATTATTTATTTACA
*
16356484 TTTTAT-TTATTTATTTATTTACA
1 TTTTTTATTA-TTATTTATTTACA
*
16356507 TTTTTTATTATTATCTAATTTA-A
1 TTTTTTATTATTAT-TTATTTACA
*
16356530 CTTTTTAT
1 TTTTTTAT
16356538 ATAACGCTCA
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
21 1 0.02
22 8 0.19
23 25 0.58
24 9 0.21
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (23 bp):
TTTTTTATTATTATTTATTTACA
Found at i:16356582 original size:25 final size:25
Alignment explanation
Indices: 16356554--16356647 Score: 73
Period size: 25 Copynumber: 3.7 Consensus size: 25
16356544 CTCATTTCAA
*
16356554 ATTTTTATACATTATTTACTTTAAT
1 ATTTTTATACATTATTTATTTTAAT
* * *
16356579 ATTTTCATAAATTATGTATTTTTAACT
1 ATTTTTATACATTATTTA-TTTTAA-T
* * *
16356606 TTTTTTACACATTATATATTTTGAAT
1 ATTTTTATACATTATTTATTTT-AAT
* *
16356632 -TGTTTATATATTATTT
1 ATTTTTATACATTATTT
16356648 TTAAAGAGTT
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
25 27 0.51
26 10 0.19
27 16 0.30
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (25 bp):
ATTTTTATACATTATTTATTTTAAT
Found at i:16358313 original size:47 final size:47
Alignment explanation
Indices: 16358262--16358356 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
16358252 TTTTTAAGAA
16358262 ATCTACCAAACAACAGAAAATATTTTACACAGATTCATTCAAACACT
1 ATCTACCAAACAACAGAAAATATTTTACACAGATTCATTCAAACACT
*
16358309 ATCTACCAAACAACAGAAAATATTTTACACAGATTCATTTAAACACT
1 ATCTACCAAACAACAGAAAATATTTTACACAGATTCATTCAAACACT
16358356 A
1 A
16358357 GAAAATATTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.47, C:0.22, G:0.04, T:0.26
Consensus pattern (47 bp):
ATCTACCAAACAACAGAAAATATTTTACACAGATTCATTCAAACACT
Found at i:16358402 original size:14 final size:14
Alignment explanation
Indices: 16358383--16358421 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
16358373 CCAGAAAAGT
16358383 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
16358397 AAATCATTTTCCGG
1 AAATCATTTTCCAG
16358411 AAATCATTTTC
1 AAATCATTTTC
16358422 AGTAAAACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:16367336 original size:25 final size:25
Alignment explanation
Indices: 16367307--16367508 Score: 115
Period size: 25 Copynumber: 8.0 Consensus size: 25
16367297 TGAAATGCCT
* *
16367307 ATTATTTGGAAAGCCTTAGTGGAGA
1 ATTATCTGGAAAGCCTTAGTGGCGA
* * * *
16367332 ATTATCT-AAAAGGCCTTTGTGGTGT
1 ATTATCTGGAAA-GCCTTAGTGGCGA
* * *
16367357 ATCAT-TCGAAAAGCCTTAGTGGCAA
1 ATTATCT-GGAAAGCCTTAGTGGCGA
* * * *
16367382 AGTTATTTGGGAAGCTTTTGTGGCGA
1 A-TTATCTGGAAAGCCTTAGTGGCGA
** * *
16367408 ATTATCTAAAAAGCCTTTGTGGCGT
1 ATTATCTGGAAAGCCTTAGTGGCGA
* * * *
16367433 ATTATTTGGAGAGCTTTAATGGCGA
1 ATTATCTGGAAAGCCTTAGTGGCGA
*
16367458 AGTTATCTGGGAAGCCATTA-TGGCGA
1 A-TTATCTGGAAAGCC-TTAGTGGCGA
*
16367484 ATTATCT-GAAAGGCCTTTGTGGCGA
1 ATTATCTGGAAA-GCCTTAGTGGCGA
16367509 GATCTAGGTA
Statistics
Matches: 132, Mismatches: 36, Indels: 18
0.71 0.19 0.10
Matches are distributed among these distances:
24 9 0.07
25 81 0.61
26 38 0.29
27 4 0.03
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (25 bp):
ATTATCTGGAAAGCCTTAGTGGCGA
Found at i:16367456 original size:50 final size:52
Alignment explanation
Indices: 16367365--16367465 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 52
16367355 GTATCATTCG
**
16367365 AAAAGCCTTAGTGGCAAAGTTATTTGGGAAGCTTTTGTGGCGAA-TTATCTA
1 AAAAGCCTTAGTGGCAAAGTTATTTGGGAAGCTTTAATGGCGAAGTTATCTA
* **
16367416 AAAAGCCTTTGTGGCGTA-TTATTT-GGAGAGCTTTAATGGCGAAGTTATCT
1 AAAAGCCTTAGTGGCAAAGTTATTTGGGA-AGCTTTAATGGCGAAGTTATCT
16367466 GGGAAGCCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
49 3 0.07
50 19 0.44
51 21 0.49
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.35
Consensus pattern (52 bp):
AAAAGCCTTAGTGGCAAAGTTATTTGGGAAGCTTTAATGGCGAAGTTATCTA
Found at i:16367461 original size:76 final size:76
Alignment explanation
Indices: 16367308--16367507 Score: 247
Period size: 76 Copynumber: 2.6 Consensus size: 76
16367298 GAAATGCCTA
* * * *
16367308 TTATTTGGAAAGCCTTAGTGGAGAATTATCTAAAAGGCCTTTGTGGTGTATCATTCGAAAAGCCT
1 TTATTTGGGAAGCCTTTGTGGCGAATTATCTAAAAGGCCTTTGTGGCGTATCATTCGAAAAGCCT
*
16367373 TAGTGGCAAAG
66 TAATGGCAAAG
* * * * * * *
16367384 TTATTTGGGAAGCTTTTGTGGCGAATTATCTAAAAAGCCTTTGTGGCGTATTATTTGGAGAGCTT
1 TTATTTGGGAAGCCTTTGTGGCGAATTATCTAAAAGGCCTTTGTGGCGTATCATTCGAAAAGCCT
*
16367449 TAATGGCGAAG
66 TAATGGCAAAG
* * * *
16367460 TTATCTGGGAAGCCATTATGGCGAATTATCTGAAAGGCCTTTGTGGCG
1 TTATTTGGGAAGCCTTTGTGGCGAATTATCTAAAAGGCCTTTGTGGCG
16367508 AGATCTAGGT
Statistics
Matches: 105, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
76 105 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.34
Consensus pattern (76 bp):
TTATTTGGGAAGCCTTTGTGGCGAATTATCTAAAAGGCCTTTGTGGCGTATCATTCGAAAAGCCT
TAATGGCAAAG
Found at i:16367473 original size:51 final size:50
Alignment explanation
Indices: 16367365--16367488 Score: 117
Period size: 51 Copynumber: 2.4 Consensus size: 50
16367355 GTATCATTCG
* **
16367365 AAAAGCC-TTAGTGGCAAAGTTATTTGGGAAGCTTTTGTGGCGAATTATCTA
1 AAAAGCCATTA-TGGCGAA-TTATTTGGGAAGCTTTAATGGCGAATTATCTA
* * * *
16367416 AAAAGCCTTTGTGGCGTATTATTT-GGAGAGCTTTAATGGCGAAGTTATCTG
1 AAAAGCCATTATGGCGAATTATTTGGGA-AGCTTTAATGGCGAA-TTATCTA
**
16367467 GGAAGCCATTATGGCGAATTAT
1 AAAAGCCATTATGGCGAATTAT
16367489 CTGAAAGGCC
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
49 3 0.05
50 19 0.32
51 35 0.59
52 2 0.03
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (50 bp):
AAAAGCCATTATGGCGAATTATTTGGGAAGCTTTAATGGCGAATTATCTA
Found at i:16380816 original size:14 final size:14
Alignment explanation
Indices: 16380767--16380808 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
16380757 TTAGCAAATG
*
16380767 AATATTAAATAAATA
1 AATATTAAA-ATATA
*
16380782 AA-ATTATAATATA
1 AATATTAAAATATA
16380795 AATATTAAAATATA
1 AATATTAAAATATA
16380809 TATGTTAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 6 0.26
14 15 0.65
15 2 0.09
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATATTAAAATATA
Found at i:16386987 original size:9 final size:9
Alignment explanation
Indices: 16386973--16386999 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
16386963 TACTTTTGAG
16386973 GATAGACTT
1 GATAGACTT
16386982 GATAGACTT
1 GATAGACTT
16386991 GATAGACTT
1 GATAGACTT
16387000 AGTAATATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (9 bp):
GATAGACTT
Found at i:16395037 original size:24 final size:24
Alignment explanation
Indices: 16395001--16395102 Score: 168
Period size: 24 Copynumber: 4.2 Consensus size: 24
16394991 GCCAACACCG
*
16395001 TTCTCCCTAATCAGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
*
16395025 TTCTCCCTTATCAGCTCCTACATC
1 TTCTCCCTTATCAGCTCCTAAATC
*
16395049 CTCTCCCTTATCAGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
*
16395073 CTCTCCCTTATCAGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
16395097 TTCTCC
1 TTCTCC
16395103 TGACAGCCTT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.20, C:0.41, G:0.04, T:0.35
Consensus pattern (24 bp):
TTCTCCCTTATCAGCTCCTAAATC
Found at i:16401405 original size:27 final size:26
Alignment explanation
Indices: 16401353--16401461 Score: 110
Period size: 27 Copynumber: 4.1 Consensus size: 26
16401343 CATGGCTGCT
** * *
16401353 AGAACAGATAATGTGATAGTGTCACC
1 AGAACAGATAATGTGGCAGAGCCACC
16401379 AGAACAGATAACTGTGGCAGAGCCACC
1 AGAACAGATAA-TGTGGCAGAGCCACC
* * *
16401406 ATAACAGATATATGTAGCAGTGCCACC
1 AGAACAGATA-ATGTGGCAGAGCCACC
* *
16401433 AGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATAA-TGTGGCAGAGCCACC
16401460 AG
1 AG
16401462 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
26 12 0.18
27 55 0.81
28 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGAGCCACC
Found at i:16401609 original size:26 final size:26
Alignment explanation
Indices: 16401565--16401638 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
16401555 CAAAAGTAAC
*
16401565 CCTAGGGGTATAATGGTAATTT-TGTA
1 CCTAGGGGTAT-ATAGTAATTTCTGTA
*
16401591 CCTAGGGGTATATCAGTAATTTCTTTA
1 CCTAGGGGTATAT-AGTAATTTCTGTA
* *
16401618 CATATGGGTAT-TAAGTAATTT
1 CCTAGGGGTATAT-AGTAATTT
16401639 AACTATTCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 27 0.66
27 12 0.29
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (26 bp):
CCTAGGGGTATATAGTAATTTCTGTA
Found at i:16402928 original size:24 final size:24
Alignment explanation
Indices: 16402893--16402993 Score: 175
Period size: 24 Copynumber: 4.2 Consensus size: 24
16402883 CCAACACCGT
*
16402893 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
16402917 TCTCCCTTATCAGCTCCTACATCC
1 TCTCCCTTATCAGCTCCTAAATCC
16402941 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
16402965 TCTCCCTTATCAGCTCCTAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
16402989 TCTCC
1 TCTCC
16402994 TGACAGCCTT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.20, C:0.43, G:0.04, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:16403618 original size:15 final size:15
Alignment explanation
Indices: 16403598--16403627 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16403588 CATTTTATTT
*
16403598 ATATTAGGATAATTA
1 ATATTAAGATAATTA
16403613 ATATTAAGATAATTA
1 ATATTAAGATAATTA
16403628 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:16403655 original size:27 final size:26
Alignment explanation
Indices: 16403594--16403656 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
16403584 GCTCCATTTT
16403594 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
16403621 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
16403649 ATTTTATT
1 ATTTTATT
16403657 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:16403671 original size:10 final size:10
Alignment explanation
Indices: 16403652--16403683 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
16403642 TTTTAGGATT
16403652 TTAT-TTTAA
1 TTATCTTTAA
16403661 TTATCTTTAA
1 TTATCTTTAA
16403671 TTATCTTTAA
1 TTATCTTTAA
16403681 TTA
1 TTA
16403684 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:16404476 original size:10 final size:9
Alignment explanation
Indices: 16404456--16404485 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
16404446 AAATCAAATC
16404456 TTTTATTTT
1 TTTTATTTT
16404465 TTTTATTTT
1 TTTTATTTT
*
16404474 TTTTATCTT
1 TTTTATTTT
16404483 TTT
1 TTT
16404486 CTGTCACGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTATTTT
Found at i:16404820 original size:53 final size:53
Alignment explanation
Indices: 16404682--16404882 Score: 188
Period size: 52 Copynumber: 3.9 Consensus size: 53
16404672 CAGAAAAGAT
* * * * * *
16404682 GTGATATATGTGCCCGTTTAAGACCATAGCTGGGCTGTGACATCGGTGT-AAA
1 GTGATATGTGTTCCGGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGAAA
*
16404734 GTGATATGTGTTCCGGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGACA
1 GTGATATGTGTTCCGGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGAAA
* * *
16404787 -TGATAATGTGATT-CTGTATAAGACCATATCTGGGATATGGCATCGGTGT----
1 GTGAT-ATGTG-TTCCGGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGAAA
* * * *
16404836 GTG--ATGTGATCC-GTGTAAGACCATAGCAGGGCTATGGCTTCGGTGTG
1 GTGATATGTGTTCCGGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
16404883 TGATATGTGA
Statistics
Matches: 127, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
46 30 0.24
47 6 0.05
50 2 0.02
52 47 0.37
53 40 0.31
54 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (53 bp):
GTGATATGTGTTCCGGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGAAA
Found at i:16404857 original size:46 final size:47
Alignment explanation
Indices: 16404695--16404886 Score: 181
Period size: 53 Copynumber: 3.9 Consensus size: 47
16404685 ATATATGTGC
* * *
16404695 CCGTTTAAGACCATAGCTGGGCTGTGACATCGGTGTAAAGTGATATGTG-TT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGT---GTG--ATGTGATT
16404746 CCGGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGACATGATAATGTGATT
1 CC-GTATAAGACCATAGCTGGGCTATGGCATCGGTGTG---TG---ATGTGATT
* * *
16404800 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGTGATGTGA-T
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGTGATGTGATT
* * *
16404846 CCGTGTAAGACCATAGCAGGGCTATGGCTTCGGTGTGTGAT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGTGAT
16404887 ATGTGACAAT
Statistics
Matches: 121, Mismatches: 14, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
46 36 0.30
47 6 0.05
49 1 0.01
50 2 0.02
51 2 0.02
52 33 0.27
53 38 0.31
54 3 0.02
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (47 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGTGATGTGATT
Found at i:16405025 original size:17 final size:17
Alignment explanation
Indices: 16405003--16405036 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
16404993 CCCAAAGAAA
16405003 TTAAATTCGTGAATAGC
1 TTAAATTCGTGAATAGC
16405020 TTAAATTCGTGAATAGC
1 TTAAATTCGTGAATAGC
16405037 AACATGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (17 bp):
TTAAATTCGTGAATAGC
Found at i:16405855 original size:13 final size:13
Alignment explanation
Indices: 16405837--16405861 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16405827 TCGTAGATCA
16405837 ATATTAGGGACTC
1 ATATTAGGGACTC
16405850 ATATTAGGGACT
1 ATATTAGGGACT
16405862 TAATGATGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (13 bp):
ATATTAGGGACTC
Found at i:16414075 original size:42 final size:42
Alignment explanation
Indices: 16414018--16414177 Score: 160
Period size: 42 Copynumber: 3.8 Consensus size: 42
16414008 TAGGGTTATG
* *
16414018 TGTGATTTCGTGTAAGACTATATCTAGGATATGACATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
* * * * *
16414060 TGTGATTTCGTGTAAGACCATGTTTGGGACATGGCATGGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
** ** *
16414102 TAAGACATCGTGTAAGACCATAGT-TGGGCTATCGACATCGATA
1 TGTGATTTCGTGTAAGACCATA-TCTGGGATAT-GACATCGATA
** *
16414145 TGTGATCCCATGTAAGACCATATCTGGGATATG
1 TGTGATTTCGTGTAAGACCATATCTGGGATATG
16414178 GCATTGGTAT
Statistics
Matches: 92, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
42 60 0.65
43 32 0.35
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
Found at i:16414150 original size:85 final size:84
Alignment explanation
Indices: 16414025--16414181 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 84
16414015 ATGTGTGATT
* ** * * *
16414025 TCGTGTAAGACTATATCTAGGATATGACATCGATATGTGATTTCGTGTAAGACCATGTTTGGGAC
1 TCGTGTAAGACCATATCTAGGATATGACATCGATATGTGATCCCATGTAAGACCATATCTGGGAC
16414090 ATGGCATGGATATAAGACA
66 ATGGCATGGATATAAGACA
* *
16414109 TCGTGTAAGACCATAGT-TGGGCTATCGACATCGATATGTGATCCCATGTAAGACCATATCTGGG
1 TCGTGTAAGACCATA-TCTAGGATAT-GACATCGATATGTGATCCCATGTAAGACCATATCTGGG
*
16414173 ATATGGCAT
64 ACATGGCAT
16414182 TGGTATCTTA
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 20 0.32
85 42 0.68
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (84 bp):
TCGTGTAAGACCATATCTAGGATATGACATCGATATGTGATCCCATGTAAGACCATATCTGGGAC
ATGGCATGGATATAAGACA
Found at i:16419598 original size:14 final size:14
Alignment explanation
Indices: 16419581--16419609 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
16419571 CTCACATTTC
16419581 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
16419595 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
16419609 T
1 T
16419610 ATTTTTGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.28, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTCTTTTCTCCA
Found at i:16419599 original size:19 final size:18
Alignment explanation
Indices: 16419561--16419605 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
16419551 TACGGTACGC
16419561 TTCTTTTC-TTCTCACAT
1 TTCTTTTCTTTCTCACAT
16419578 TTCTTTTCTTTTCTC-CATT
1 TTCTTTTC-TTTCTCACA-T
16419597 TTCTTTTCT
1 TTCTTTTCT
16419606 CCATATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 8 0.32
18 3 0.12
19 14 0.56
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.67
Consensus pattern (18 bp):
TTCTTTTCTTTCTCACAT
Found at i:16420293 original size:41 final size:41
Alignment explanation
Indices: 16420248--16420340 Score: 177
Period size: 41 Copynumber: 2.2 Consensus size: 41
16420238 TACATTGTGA
16420248 ATTTGTGTAGTTGAAATGCTAAGTTGTAGGAGGTGTTGAGT
1 ATTTGTGTAGTTGAAATGCTAAGTTGTAGGAGGTGTTGAGT
16420289 ATTTGTGTAGTTGAAATGCTAAGTTGTAGGAGGTGTTGAGT
1 ATTTGTGTAGTTGAAATGCTAAGTTGTAGGAGGTGTTGAGT
16420330 ATTTGTAGTAG
1 ATTTGT-GTAG
16420341 GTCGAAGTTG
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 47 0.92
42 4 0.08
ACGTcount: A:0.25, C:0.02, G:0.33, T:0.40
Consensus pattern (41 bp):
ATTTGTGTAGTTGAAATGCTAAGTTGTAGGAGGTGTTGAGT
Found at i:16420358 original size:20 final size:19
Alignment explanation
Indices: 16420335--16420394 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
16420325 TGAGTATTTG
16420335 TAGTAGGTCGA-AGTTGTAAT
1 TAGTAGGT-GACA-TTGTAAT
*
16420355 TAGTAGGTTACATTGTAAT
1 TAGTAGGTGACATTGTAAT
*
16420374 TAGTAGGTTACATTGTGAAT
1 TAGTAGGTGACATTGT-AAT
16420394 T
1 T
16420395 TGTGTAGTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
19 24 0.65
20 13 0.35
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (19 bp):
TAGTAGGTGACATTGTAAT
Found at i:16420372 original size:19 final size:19
Alignment explanation
Indices: 16420348--16420394 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 19
16420338 TAGGTCGAAG
16420348 TTGTAATTAGTAGGTTACA
1 TTGTAATTAGTAGGTTACA
16420367 TTGTAATTAGTAGGTTACA
1 TTGTAATTAGTAGGTTACA
16420386 TTGTGAATT
1 TTGT-AATT
16420395 TGTGTAGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (19 bp):
TTGTAATTAGTAGGTTACA
Found at i:16422184 original size:16 final size:17
Alignment explanation
Indices: 16422165--16422196 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
16422155 TTATTAAATC
16422165 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
16422181 ATATATTTAATATTAA
1 ATATATTTAATATTAA
16422197 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:16422260 original size:66 final size:63
Alignment explanation
Indices: 16422189--16422401 Score: 194
Period size: 61 Copynumber: 3.4 Consensus size: 63
16422179 AAATATATTT
16422189 AATATTAATTATTTAA-AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTA-TTAAGAATTTTA--TTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
16422253 AG
62 AG
* * * * * * *
16422255 AATATTAATTATTAAGAATTTTATTAA--ATTATATATTTTAATTAT-ATTATATTTA-ATAAT
1 AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* * * *
16422315 AATTATGTTATT-TT-A-TATTTTA--CAGTATCATATATTATGGTTTGAGTAAATTCATATAAG
1 AA-TAT-TAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
16422375 AATATTAATTATTAAGAATTTTATTAA
1 AATATTAATTATTAAGAATTTTATTAA
16422402 ATTATATATT
Statistics
Matches: 113, Mismatches: 21, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
57 1 0.01
58 5 0.04
59 30 0.27
60 14 0.12
61 31 0.27
62 5 0.04
63 2 0.02
64 3 0.03
65 4 0.04
66 18 0.16
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (63 bp):
AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:16422275 original size:120 final size:120
Alignment explanation
Indices: 16422151--16422443 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
16422141 AATTATTTTA
* * *
16422151 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTAT-TTAAAATTT-TATT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATT
*
16422214 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
16422271 AATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
16422336 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
16422391 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
16422444 TAAATATGAT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 4 0.02
120 155 0.96
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:16422303 original size:18 final size:17
Alignment explanation
Indices: 16422272--16422306 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16422262 ATTATTAAGA
16422272 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
16422289 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
16422307 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:16422420 original size:18 final size:17
Alignment explanation
Indices: 16422392--16422426 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16422382 ATTATTAAGA
*
16422392 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16422409 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16422427 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16422540 original size:147 final size:149
Alignment explanation
Indices: 16422380--16422654 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
16422370 ATAAGAATAT
*
16422380 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
16422445 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
16422508 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
16422527 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
16422592 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
16422655 CAATAATCAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 91 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:16422567 original size:18 final size:17
Alignment explanation
Indices: 16422539--16422573 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16422529 ATTATTAAGA
*
16422539 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16422556 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16422574 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16422784 original size:44 final size:45
Alignment explanation
Indices: 16422735--16422829 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
16422725 TTACACCTCT
* *
16422735 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
* ** *
16422779 ATTACATTCAACCAAATAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
16422824 ATTACA
1 ATTACA
16422830 CCTCTAATCT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 17 0.39
45 27 0.61
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:16422829 original size:16 final size:16
Alignment explanation
Indices: 16422810--16422861 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
16422800 GATTTGCTAT
* *
16422810 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
*
16422826 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
16422842 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
16422858 TACA
1 TACA
16422862 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:16424523 original size:26 final size:25
Alignment explanation
Indices: 16424494--16424552 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
16424484 CTATTTTTAA
16424494 TTAAATTATAATATTATT-ATTATTT
1 TTAAATTATAATATT-TTAATTATTT
*
16424519 GTTAAATAATAATATTTTAATTATTT
1 -TTAAATTATAATATTTTAATTATTT
*
16424545 TCAAATTA
1 TTAAATTA
16424553 ATTATTAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 8 0.28
26 21 0.72
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (25 bp):
TTAAATTATAATATTTTAATTATTT
Found at i:16424554 original size:23 final size:25
Alignment explanation
Indices: 16424500--16424559 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
16424490 TTAATTAAAT
*
16424500 TATAATATTATTATTATTTGTTAAA
1 TATAATATTATTATTATTTGTCAAA
16424525 TAATAATATT-TTAATTATTT-TCAAA
1 T-ATAATATTATT-ATTATTTGTCAAA
16424550 T-TAATTATTA
1 TATAA-TATTA
16424560 AATTAGTACT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
23 3 0.10
24 4 0.13
25 8 0.27
26 15 0.50
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (25 bp):
TATAATATTATTATTATTTGTCAAA
Found at i:16434599 original size:14 final size:14
Alignment explanation
Indices: 16434561--16434599 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
16434551 TTGTTTCACT
*
16434561 GAAAATGACTTTTA
1 GAAAATGATTTTTA
* *
16434575 GAAAATAATTTTTG
1 GAAAATGATTTTTA
16434589 GAAAATGATTT
1 GAAAATGATTT
16434600 ATTTTTTTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.44, C:0.03, G:0.15, T:0.38
Consensus pattern (14 bp):
GAAAATGATTTTTA
Found at i:16435066 original size:15 final size:15
Alignment explanation
Indices: 16435046--16435099 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
16435036 ATACTACAAA
16435046 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
16435061 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
16435078 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
16435095 ATATT
1 ATATT
16435100 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:16435163 original size:16 final size:14
Alignment explanation
Indices: 16435132--16435172 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
16435122 ATGTGAATAA
16435132 TATTA-TTTAAAAT
1 TATTATTTTAAAAT
*
16435145 TATTATTTTAAAAA
1 TATTATTTTAAAAT
16435159 T-TTATTATTAAAAT
1 TATTATT-TTAAAAT
16435173 AAAATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 10 0.42
14 14 0.58
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TATTATTTTAAAAT
Found at i:16435220 original size:22 final size:22
Alignment explanation
Indices: 16435176--16435235 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
16435166 TTAAAATAAA
*
16435176 ATTAAAATATTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
16435196 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
* * *
16435218 ATTATATTAATAATTTAT
1 ATTAAAATAATAAATTAT
16435236 TATATGACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.38
21 2 0.06
22 19 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:16441256 original size:94 final size:93
Alignment explanation
Indices: 16441130--16441316 Score: 236
Period size: 94 Copynumber: 2.0 Consensus size: 93
16441120 ATCAATTGAT
* *
16441130 AGGAATTGAACTGTCAAAAAATCATTTGAATATTTCAA-ATATGCAAAAGAATACAAATTGATGG
1 AGGAATTGAACTGTCAAAAAATCATTTCAATATTT-AACATACGCAAAAGAATACAAATTGATGG
16441194 CTTATGACG-TTTCTTCAATTAGTATAAA
65 CTTATGACGTTTTCTTCAATTAGTATAAA
* *** *
16441222 AGGAATATGAACTGTCCAAAAAA-CAATTTCAATATTTAACATACGTAGTGGAATCCAAATTGAT
1 AGGAAT-TGAACTGT-CAAAAAATC-ATTTCAATATTTAACATACGCAAAAGAATACAAATTGAT
* *
16441286 GGCTTATGATGTTTTCTTCAATTAGTGTAAA
63 GGCTTATGACGTTTTCTTCAATTAGTATAAA
16441317 TTGTAATGAG
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
92 6 0.07
93 11 0.14
94 46 0.57
95 18 0.22
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (93 bp):
AGGAATTGAACTGTCAAAAAATCATTTCAATATTTAACATACGCAAAAGAATACAAATTGATGGC
TTATGACGTTTTCTTCAATTAGTATAAA
Found at i:16450916 original size:29 final size:28
Alignment explanation
Indices: 16450845--16450918 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
16450835 AAGTCTACAT
* * *
16450845 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAAAC
*
16450873 TCATTCATATGGCCCATTAGGCCCAAAAC
1 ACATTCATATGGCCCATTAGGCCC-AAAC
* *
16450902 ACGTTCATATAGCCCAT
1 ACATTCATATGGCCCAT
16450919 CCGGCCCGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 21 0.55
29 17 0.45
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAAAC
Found at i:16455172 original size:18 final size:17
Alignment explanation
Indices: 16455150--16455198 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
16455140 TTTTCATATC
*
16455150 TCAATTCAATATCCTAA
1 TCAATTCAATATCATAA
16455167 TCCAATTCAA-ATTCATAA
1 T-CAATTCAATA-TCATAA
16455185 TC-ATTCAATATCAT
1 TCAATTCAATATCAT
16455199 TCATATTGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 10 0.36
17 4 0.14
18 14 0.50
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (17 bp):
TCAATTCAATATCATAA
Found at i:16456298 original size:16 final size:17
Alignment explanation
Indices: 16456266--16456308 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
16456256 TCTCCTTCTG
16456266 TGTTTCGTTTTCAATTC
1 TGTTTCGTTTTCAATTC
*
16456283 TGTTTCTTTTTC-ATTC
1 TGTTTCGTTTTCAATTC
*
16456299 T-TTTTGTTTT
1 TGTTTCGTTTT
16456309 GTTTTCTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 7 0.30
16 5 0.22
17 11 0.48
ACGTcount: A:0.07, C:0.14, G:0.09, T:0.70
Consensus pattern (17 bp):
TGTTTCGTTTTCAATTC
Found at i:16458129 original size:39 final size:39
Alignment explanation
Indices: 16458086--16458164 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
16458076 TACAGGGGAC
16458086 ACACGGCCGTGTCACTTGGCCGTGTGTCACACACGGTTG
1 ACACGGCCGTGTCACTTGGCCGTGTGTCACACACGGTTG
16458125 ACACGGCCGTGTCACTTGGCCGTGTGTCACACACGGTTG
1 ACACGGCCGTGTCACTTGGCCGTGTGTCACACACGGTTG
16458164 A
1 A
16458165 GACGCACGCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.23
Consensus pattern (39 bp):
ACACGGCCGTGTCACTTGGCCGTGTGTCACACACGGTTG
Found at i:16459966 original size:105 final size:101
Alignment explanation
Indices: 16459850--16460043 Score: 244
Period size: 105 Copynumber: 1.9 Consensus size: 101
16459840 TTTGTAGTGT
* * * *
16459850 CATAACTCAGTTATGGTCTTATCATCAGAATGTCATAGCCCAGCTGTGGTATTACACATGTATAT
1 CATAACCCAGTTATGATCTTATCATCAAAATGTCATAGCCCAGCTATGGTATTACAC-T-TA-A-
* * *
16459915 ATACTGCCACGGTCTAACCATGGTCTTACGTTCAAGGTAC
62 ACACTACCACGGTCCAACCATGGTCTTACGTTCAAGGTAC
* * * *
16459955 CATAACCCAGTTATGATCTTTTCATTAAAATGTCATAGCCTAGCTATGGTCTTACACTTAAACAC
1 CATAACCCAGTTATGATCTTATCATCAAAATGTCATAGCCCAGCTATGGTATTACACTTAAACAC
*
16460020 TACCATGGTCCAACCATGGTCTTA
66 TACCACGGTCCAACCATGGTCTTA
16460044 TCCGTCAATC
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
101 24 0.31
102 1 0.01
103 2 0.03
104 1 0.01
105 49 0.64
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (101 bp):
CATAACCCAGTTATGATCTTATCATCAAAATGTCATAGCCCAGCTATGGTATTACACTTAAACAC
TACCACGGTCCAACCATGGTCTTACGTTCAAGGTAC
Found at i:16462586 original size:17 final size:17
Alignment explanation
Indices: 16462547--16462580 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
16462537 TCAATTTGTA
*
16462547 AATAATGATTAAAAAAT
1 AATAATGAATAAAAAAT
16462564 AATAATGAATAAAAAAT
1 AATAATGAATAAAAAAT
16462581 TTTAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (17 bp):
AATAATGAATAAAAAAT
Found at i:16466947 original size:29 final size:29
Alignment explanation
Indices: 16466914--16466997 Score: 93
Period size: 29 Copynumber: 2.9 Consensus size: 29
16466904 AAGAATGGGA
16466914 AATTATTATATGAAACAATTTTTTTTGTT
1 AATTATTATATGAAACAATTTTTTTTGTT
*
16466943 CATTATTATATGAAAC-ATTTGTTTCTTGTT
1 AATTATTATATGAAACAATTT-TTT-TTGTT
**
16466973 AAGAACTTA-AT-AAACAATTTTTTTT
1 AATTA-TTATATGAAACAATTTTTTTT
16466998 AAGTCGTAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
28 6 0.13
29 25 0.53
30 13 0.28
31 3 0.06
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (29 bp):
AATTATTATATGAAACAATTTTTTTTGTT
Found at i:16471022 original size:33 final size:33
Alignment explanation
Indices: 16470984--16471048 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
16470974 GGATTCAAAA
*
16470984 TAACATTATTCACCATGTCACGTTTAAAAATAC
1 TAACATTATTCACCATGTCACATTTAAAAATAC
*
16471017 TAACATTATTCACCATGTCACATTTACAAATA
1 TAACATTATTCACCATGTCACATTTAAAAATA
16471049 GTAGAAGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.22, G:0.05, T:0.34
Consensus pattern (33 bp):
TAACATTATTCACCATGTCACATTTAAAAATAC
Found at i:16477323 original size:36 final size:37
Alignment explanation
Indices: 16477276--16477366 Score: 105
Period size: 37 Copynumber: 2.5 Consensus size: 37
16477266 GTCTCCAAAT
* * *
16477276 TCACATTTCAATTCAATTTCATTTTTTCACTTTCAA-
1 TCACAATTCAATTCAATTTCACTTTTCCACTTTCAAG
* *
16477312 TCACAATTCAATTCAAAATTCACTTTTCCATTTTCAAG
1 TCACAATTCAATTC-AATTTCACTTTTCCACTTTCAAG
16477350 TCA-ATATTCAATTCAAT
1 TCACA-ATTCAATTCAAT
16477367 ACATATATTC
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
36 13 0.28
37 21 0.46
38 12 0.26
ACGTcount: A:0.33, C:0.22, G:0.01, T:0.44
Consensus pattern (37 bp):
TCACAATTCAATTCAATTTCACTTTTCCACTTTCAAG
Found at i:16478055 original size:14 final size:15
Alignment explanation
Indices: 16478036--16478077 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
16478026 AAACCCTAAA
16478036 TTTC-TTCTTTTCTT
1 TTTCTTTCTTTTCTT
*
16478050 TTTCTTTTTTTTC-T
1 TTTCTTTCTTTTCTT
16478064 TTTCTTTCTGTTTC
1 TTTCTTTCT-TTTC
16478078 GTCACCTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (15 bp):
TTTCTTTCTTTTCTT
Found at i:16479312 original size:12 final size:12
Alignment explanation
Indices: 16479295--16479350 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
16479285 TTAATACTCT
16479295 AAATTAAAACAA
1 AAATTAAAACAA
*
16479307 AAATT-ATACATA
1 AAATTAAAACA-A
* **
16479319 AAATTAATACTCT
1 AAATTAAAAC-AA
16479332 AAATTAAAACAA
1 AAATTAAAACAA
16479344 AAATTAA
1 AAATTAA
16479351 TAATTTCATT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
11 4 0.11
12 18 0.51
13 13 0.37
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (12 bp):
AAATTAAAACAA
Found at i:16479317 original size:37 final size:37
Alignment explanation
Indices: 16479275--16479349 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
16479265 CTCCAAAAAA
*
16479275 ATACATAAAGTTAATACTCTAAATTAAAACAAAAATT
1 ATACATAAAATTAATACTCTAAATTAAAACAAAAATT
16479312 ATACATAAAATTAATACTCTAAATTAAAACAAAAATT
1 ATACATAAAATTAATACTCTAAATTAAAACAAAAATT
16479349 A
1 A
16479350 ATAATTTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.59, C:0.11, G:0.01, T:0.29
Consensus pattern (37 bp):
ATACATAAAATTAATACTCTAAATTAAAACAAAAATT
Found at i:16481789 original size:25 final size:24
Alignment explanation
Indices: 16481761--16481807 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
16481751 AAATATAACA
*
16481761 TAAAAGAAATAAAACAAATGAAACG
1 TAAAAGAAATAAAA-AAAGGAAACG
*
16481786 TAAAAGAAGTAAAAAAAGGAAA
1 TAAAAGAAATAAAAAAAGGAAA
16481808 GAAAGTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.70, C:0.04, G:0.15, T:0.11
Consensus pattern (24 bp):
TAAAAGAAATAAAAAAAGGAAACG
Found at i:16482862 original size:39 final size:38
Alignment explanation
Indices: 16482796--16482892 Score: 115
Period size: 39 Copynumber: 2.5 Consensus size: 38
16482786 CGGATAGATT
* * *
16482796 CGATGAGGTACTGGGTACCAACTTTACTTCG-GCTAGGC
1 CGATGAGGCACTGGGTGCCAACTTTACTTCGAACTA-GC
* * *
16482834 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACT-TTACTTCGAACTAGC
16482873 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
16482893 TATTGGTGTG
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
38 19 0.39
39 27 0.55
40 3 0.06
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (38 bp):
CGATGAGGCACTGGGTGCCAACTTTACTTCGAACTAGC
Found at i:16483032 original size:18 final size:18
Alignment explanation
Indices: 16483009--16483049 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
16482999 AAAGAAAAAA
16483009 AGAAATT-GAATTATGAAT
1 AGAAATTGGAATTATG-AT
*
16483027 AGAAATTGGAATTGTGAT
1 AGAAATTGGAATTATGAT
16483045 AGAAA
1 AGAAA
16483050 GAGAAAAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (18 bp):
AGAAATTGGAATTATGAT
Found at i:16483558 original size:20 final size:20
Alignment explanation
Indices: 16483535--16483572 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
16483525 GTTATTAAGT
16483535 TAAAAATTATGTTA-ATGATA
1 TAAAAATTA-GTTATATGATA
*
16483555 TAAATATTAGTTATATGA
1 TAAAAATTAGTTATATGA
16483573 ATGTGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (20 bp):
TAAAAATTAGTTATATGATA
Found at i:16487835 original size:32 final size:32
Alignment explanation
Indices: 16487799--16487958 Score: 257
Period size: 32 Copynumber: 5.0 Consensus size: 32
16487789 TATAACTATG
16487799 CTACTTTTTTATATGTAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
16487831 CTACTTTTTCATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
16487863 CTACTTTTTTATATGTGAACCTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
*
16487895 CTACTTTTTTATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
16487927 CTACTTTTTTATATGTATACCTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
16487959 ATTTTTTATG
Statistics
Matches: 116, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 116 1.00
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (32 bp):
CTACTTTTTTATATGTAAAACTAATGTATGAT
Found at i:16489789 original size:24 final size:24
Alignment explanation
Indices: 16489756--16489845 Score: 128
Period size: 24 Copynumber: 3.8 Consensus size: 24
16489746 TTGACGATTC
*
16489756 AAATCTGCACACATAGTGCTATAT
1 AAATCCGCACACATAGTGCTATAT
*
16489780 AAATCCGCACACATAGTGCTATAC
1 AAATCCGCACACATAGTGCTATAT
*
16489804 AAATCCGCACACATAGTGCCAT-T
1 AAATCCGCACACATAGTGCTATAT
*
16489827 CAAATCTGCACACATAGTG
1 -AAATCCGCACACATAGTG
16489846 TAACATCCCG
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.37, C:0.27, G:0.13, T:0.23
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCTATAT
Found at i:16489809 original size:73 final size:72
Alignment explanation
Indices: 16489683--16489845 Score: 195
Period size: 73 Copynumber: 2.2 Consensus size: 72
16489673 TCCATCAAGG
* * * * * *
16489683 AAATTTGCACCCATAGTGCCATGTTAACCCGCACACATAGTGCCTTAATAATCCATACACATATT
1 AAATCTGCACACATAGTGCCATATAAACCCGCACACATAGTGCCTTAATAATCCACACACATAGT
*
16489748 GACGATTC
66 G-CCATTC
* * *
16489756 AAATCTGCACACATAGTGCTATATAAATCCGCACACATAGTG-CTATACA-AATCCGCACACATA
1 AAATCTGCACACATAGTGCCATATAAACCCGCACACATAGTGCCT-TA-ATAATCCACACACATA
16489819 GTGCCATTC
64 GTGCCATTC
16489828 AAATCTGCACACATAGTG
1 AAATCTGCACACATAGTG
16489846 TAACATCCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
72 25 0.32
73 52 0.67
74 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (72 bp):
AAATCTGCACACATAGTGCCATATAAACCCGCACACATAGTGCCTTAATAATCCACACACATAGT
GCCATTC
Found at i:16489832 original size:48 final size:48
Alignment explanation
Indices: 16489711--16489845 Score: 148
Period size: 48 Copynumber: 2.8 Consensus size: 48
16489701 CCATGTTAAC
** * *
16489711 CCGCACACATAGTGCC-TTAATAATCCATACACATATTGACGATTCAAAT
1 CCGCACACATAGTGCCATT-A-AATCCGCACACATAGTGACGATACAAAT
* * *
16489760 CTGCACACATAGTGCTATATAAATCCGCACACATAGTG-CTATACAAAT
1 CCGCACACATAGTGCCAT-TAAATCCGCACACATAGTGACGATACAAAT
*
16489808 CCGCACACATAGTGCCATTCAAATCTGCACACATAGTG
1 CCGCACACATAGTGCCATT-AAATCCGCACACATAGTG
16489846 TAACATCCCG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
47 1 0.01
48 41 0.56
49 28 0.38
50 2 0.03
51 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (48 bp):
CCGCACACATAGTGCCATTAAATCCGCACACATAGTGACGATACAAAT
Found at i:16491107 original size:46 final size:44
Alignment explanation
Indices: 16491048--16491162 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
16491038 ACAGGACAGA
* *
16491048 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
16491094 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
16491138 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
16491163 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:16491143 original size:44 final size:45
Alignment explanation
Indices: 16491048--16491181 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
16491038 ACAGGACAGA
* *
16491048 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
16491094 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
16491138 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
16491182 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:16499026 original size:14 final size:14
Alignment explanation
Indices: 16499007--16499038 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
16498997 TGTAGTTCAT
16499007 TTAGACATATGTGA
1 TTAGACATATGTGA
16499021 TTAGACATATGTGA
1 TTAGACATATGTGA
16499035 TTAG
1 TTAG
16499039 GTCTCAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (14 bp):
TTAGACATATGTGA
Found at i:16504513 original size:20 final size:20
Alignment explanation
Indices: 16504488--16504525 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
16504478 AGGATAAAAT
16504488 TTAAAATA-TAAATATTAATG
1 TTAAAATACTAAA-ATTAATG
16504508 TTAAAATACTAAAATTAA
1 TTAAAATACTAAAATTAA
16504526 CATTATGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (20 bp):
TTAAAATACTAAAATTAATG
Found at i:16504539 original size:27 final size:26
Alignment explanation
Indices: 16504509--16504564 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
16504499 ATATTAATGT
16504509 TAAAATACTAAAATTAACATTATGATA
1 TAAAATA-TAAAATTAACATTATGATA
* * *
16504536 TAAAAATATATAATTAACTTTTTGATA
1 T-AAAATATAAAATTAACATTATGATA
16504563 TA
1 TA
16504565 TATAATTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 1 0.04
27 18 0.72
28 6 0.24
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (26 bp):
TAAAATATAAAATTAACATTATGATA
Found at i:16505789 original size:2 final size:2
Alignment explanation
Indices: 16505782--16505809 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
16505772 GTTTGTTCTA
16505782 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16505810 TGTTCAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16510902 original size:33 final size:33
Alignment explanation
Indices: 16510860--16510925 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
16510850 GATGTGATTA
16510860 AGCAACTGTAGGAACCTAAGTTTTTCATTTTTT
1 AGCAACTGTAGGAACCTAAGTTTTTCATTTTTT
16510893 AGCAACTGTAGGAACCTAAGTTTTTCATTTTTT
1 AGCAACTGTAGGAACCTAAGTTTTTCATTTTTT
16510926 TCTTTAAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (33 bp):
AGCAACTGTAGGAACCTAAGTTTTTCATTTTTT
Found at i:16521869 original size:21 final size:20
Alignment explanation
Indices: 16521829--16521871 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
16521819 TTTAATTTTA
16521829 TTCATATTTTAAATATAAAT
1 TTCATATTTTAAATATAAAT
16521849 TTCAT-TTTTAAACTAATAAAT
1 TTCATATTTTAAA-T-ATAAAT
16521870 TT
1 TT
16521872 TTTTCTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 6 0.29
21 8 0.38
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (20 bp):
TTCATATTTTAAATATAAAT
Found at i:16529712 original size:6 final size:6
Alignment explanation
Indices: 16529694--16529744 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
16529684 ACTACCTTGA
* * * *
16529694 TCTA-C TCTTCC TCTACC TCTACC TCTACC TCTACC TTTACC CCTTCC
1 TCTACC TCTACC TCTACC TCTACC TCTACC TCTACC TCTACC TCTACC
16529741 TCTA
1 TCTA
16529745 AAATTGGAAG
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
5 3 0.08
6 34 0.92
ACGTcount: A:0.14, C:0.47, G:0.00, T:0.39
Consensus pattern (6 bp):
TCTACC
Found at i:16529724 original size:18 final size:18
Alignment explanation
Indices: 16529694--16529744 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
16529684 ACTACCTTGA
16529694 TCTA-CTCTTCCTCTACC
1 TCTACCTCTTCCTCTACC
*
16529711 TCTACCTCTACCTCTACC
1 TCTACCTCTTCCTCTACC
* *
16529729 TTTACCCCTTCCTCTA
1 TCTACCTCTTCCTCTA
16529745 AAATTGGAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 4 0.14
18 25 0.86
ACGTcount: A:0.14, C:0.47, G:0.00, T:0.39
Consensus pattern (18 bp):
TCTACCTCTTCCTCTACC
Found at i:16533299 original size:23 final size:23
Alignment explanation
Indices: 16533236--16533300 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 23
16533226 CCTAATCAGT
* *
16533236 ATACGACATAT-AAGTGCTTG-A
1 ATACGACACATAAAGTGCCTGAA
* * *
16533257 A-ACGACACACAAGGTACCTGAA
1 ATACGACACATAAAGTGCCTGAA
16533279 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
16533301 TTGGAAAAGC
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
20 7 0.21
21 7 0.21
22 2 0.06
23 17 0.52
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:16534348 original size:25 final size:23
Alignment explanation
Indices: 16534320--16534375 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
16534310 TAAATTATAA
* *
16534320 GTAATTATATATTTATTTTACATTT
1 GTAATTATA-ATTT-TATTACAATT
*
16534345 GTAATAATAATTTTATTACAATT
1 GTAATTATAATTTTATTACAATT
*
16534368 GTCATTAT
1 GTAATTAT
16534376 TTAATTTGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 14 0.54
24 4 0.15
25 8 0.31
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (23 bp):
GTAATTATAATTTTATTACAATT
Found at i:16534584 original size:16 final size:16
Alignment explanation
Indices: 16534565--16534606 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
16534555 AATCTCATAA
16534565 TATAATTAATATAAAT
1 TATAATTAATATAAAT
*
16534581 TATAATTTA-ATAAAT
1 TATAATTAATATAAAT
16534596 TAATAA-TAATA
1 T-ATAATTAATA
16534607 ATACACTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TATAATTAATATAAAT
Found at i:16536652 original size:28 final size:28
Alignment explanation
Indices: 16536583--16536659 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
16536573 ATTATGGAAT
16536583 TGAAAAG-GAAATTGAATTGATGATGGA
1 TGAAAAGTGAAATTGAATTGATGATGGA
* * * *
16536610 T-AAGTATTGATATTGAATTGTAT-ATTGA
1 TGAA-AAGTGAAATTGAATTG-ATGATGGA
16536638 TGAAAAGTGAAATTGAATTGAT
1 TGAAAAGTGAAATTGAATTGAT
16536660 TCGTAAATGA
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
26 2 0.05
27 4 0.10
28 29 0.74
29 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (28 bp):
TGAAAAGTGAAATTGAATTGATGATGGA
Found at i:16538420 original size:19 final size:18
Alignment explanation
Indices: 16538377--16538420 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
16538367 TATTTATCTC
* *
16538377 ATAAATATTTTTTTAATA
1 ATAAATATCTATTTAATA
*
16538395 ATAAATATCTATTTACTA
1 ATAAATATCTATTTAATA
16538413 ATTAAATA
1 A-TAAATA
16538421 AAAATATTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (18 bp):
ATAAATATCTATTTAATA
Done.