Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 56 of 352
Found at i:17959790 original size:15 final size:15
Alignment explanation
Indices: 17959772--17959803 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
17959762 GAATATATAT
*
17959772 AATATAATATTAAAA
1 AATATAATAATAAAA
17959787 AATATAATAATAAAA
1 AATATAATAATAAAA
17959802 AA
1 AA
17959804 AGAGGGAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AATATAATAATAAAA
Found at i:17960308 original size:30 final size:30
Alignment explanation
Indices: 17960271--17960399 Score: 213
Period size: 30 Copynumber: 4.3 Consensus size: 30
17960261 TAGGTACAAG
17960271 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
17960301 AGGTGGTGGAGGAAGTGTGGCTAGTAGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
17960331 TGGTGGTGGAGGAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
17960361 TGGTGGTGAAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
17960391 TGGTGGTGG
1 TGGTGGTGG
17960400 CAAAGGCTAG
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 91 1.00
ACGTcount: A:0.18, C:0.05, G:0.51, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:17960359 original size:18 final size:18
Alignment explanation
Indices: 17960306--17960359 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
17960296 GGAGTAGGTG
17960306 GTGGAGGAAGTGTGGCTA
1 GTGGAGGAAGTGTGGCTA
*
17960324 GT--A-G-AGT-TGG-TG
1 GTGGAGGAAGTGTGGCTA
17960336 GTGGAGGAAGTGTGGCTA
1 GTGGAGGAAGTGTGGCTA
17960354 GTGGAG
1 GTGGAG
17960360 TTGGTGGTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 3 0.11
14 4 0.14
15 2 0.07
16 4 0.14
17 3 0.11
18 9 0.32
ACGTcount: A:0.20, C:0.04, G:0.52, T:0.24
Consensus pattern (18 bp):
GTGGAGGAAGTGTGGCTA
Found at i:17962638 original size:50 final size:50
Alignment explanation
Indices: 17962563--17962739 Score: 257
Period size: 50 Copynumber: 3.5 Consensus size: 50
17962553 CCATGGCAAC
* *
17962563 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGGATAAATGA
*
17962613 AAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGGATAAATGA
17962663 AAGTGATAAGTGATAGCTTT-GGCTACACTTATCTGATCAAGGATAAATGA
1 AAGTGATAAGTGATAG-TTTCGGCTACACTTATCTGATCAAGGATAAATGA
* * * * *
17962713 CAAATAAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGTTTCGGCTAC
17962740 CTGATCAGTG
Statistics
Matches: 115, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
50 94 0.82
51 21 0.18
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGGATAAATGA
Found at i:17962757 original size:31 final size:31
Alignment explanation
Indices: 17962719--17962777 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
17962709 ATGACAAATA
17962719 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
* *
17962750 AAAAGTGGTAGCTTCGGGTACTTGATCA
1 AAAAGTGGTAGCTTCGGCTACCTGATCA
17962778 TCGGCTACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
Found at i:17962784 original size:46 final size:46
Alignment explanation
Indices: 17962732--17962823 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
17962722 AGTGGTAGCT
* * * *
17962732 TCGGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGGTACTTGATCA
1 TCGGCTACCTGATCAGTGAAAAATAGTAGCTTCGGCTACCTGATCA
*
17962778 TCGGCTACTTGATCAGTGAAAAATAGTAGCTTCGGCTACCTGATCA
1 TCGGCTACCTGATCAGTGAAAAATAGTAGCTTCGGCTACCTGATCA
17962824 ATGAACAGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (46 bp):
TCGGCTACCTGATCAGTGAAAAATAGTAGCTTCGGCTACCTGATCA
Found at i:17962786 original size:15 final size:15
Alignment explanation
Indices: 17962763--17962792 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
17962753 AGTGGTAGCT
*
17962763 TCGGGTACTTGATCA
1 TCGGCTACTTGATCA
17962778 TCGGCTACTTGATCA
1 TCGGCTACTTGATCA
17962793 GTGAAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (15 bp):
TCGGCTACTTGATCA
Found at i:17962816 original size:31 final size:31
Alignment explanation
Indices: 17962778--17962847 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
17962768 TACTTGATCA
* *
17962778 TCGGCTACTTGATCAGTGAAAAATAGTAGCT
1 TCGGCTACCTGATCAATGAAAAATAGTAGCT
* * *
17962809 TCGGCTACCTGATCAATGAACAGTGGTAGCT
1 TCGGCTACCTGATCAATGAAAAATAGTAGCT
17962840 TCGGCTAC
1 TCGGCTAC
17962848 AAGTGACAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (31 bp):
TCGGCTACCTGATCAATGAAAAATAGTAGCT
Found at i:17969361 original size:114 final size:114
Alignment explanation
Indices: 17969183--17969411 Score: 458
Period size: 114 Copynumber: 2.0 Consensus size: 114
17969173 AGATAAGAGC
17969183 AACTTATCACTTAATGAAGAATATTTTCACTTAATTCTATTTTATTTATTTTAATATTATATTAT
1 AACTTATCACTTAATGAAGAATATTTTCACTTAATTCTATTTTATTTATTTTAATATTATATTAT
17969248 TCAATAAAAAAATTCCATTTAAAATTTAATTTTTTATTTAAAATTAAAG
66 TCAATAAAAAAATTCCATTTAAAATTTAATTTTTTATTTAAAATTAAAG
17969297 AACTTATCACTTAATGAAGAATATTTTCACTTAATTCTATTTTATTTATTTTAATATTATATTAT
1 AACTTATCACTTAATGAAGAATATTTTCACTTAATTCTATTTTATTTATTTTAATATTATATTAT
17969362 TCAATAAAAAAATTCCATTTAAAATTTAATTTTTTATTTAAAATTAAAG
66 TCAATAAAAAAATTCCATTTAAAATTTAATTTTTTATTTAAAATTAAAG
17969411 A
1 A
17969412 TAAAATGTAG
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 115 1.00
ACGTcount: A:0.41, C:0.08, G:0.03, T:0.48
Consensus pattern (114 bp):
AACTTATCACTTAATGAAGAATATTTTCACTTAATTCTATTTTATTTATTTTAATATTATATTAT
TCAATAAAAAAATTCCATTTAAAATTTAATTTTTTATTTAAAATTAAAG
Found at i:17970240 original size:27 final size:29
Alignment explanation
Indices: 17970188--17970241 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
17970178 GGTATCGTTT
*
17970188 TATATAAATTTTTATTTTGAATAATTTAA
1 TATATAAATGTTTATTTTGAATAATTTAA
17970217 TATATGAAATGTTT-TTTT-AA-AATTT
1 TATAT-AAATGTTTATTTTGAATAATTT
17970242 TGACAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 5 0.22
28 2 0.09
29 9 0.39
30 7 0.30
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (29 bp):
TATATAAATGTTTATTTTGAATAATTTAA
Found at i:17971222 original size:20 final size:22
Alignment explanation
Indices: 17971183--17971222 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
17971173 AATATAATAT
*
17971183 GATTTTATATAATTTAAAAACG
1 GATTTTATATAATCTAAAAACG
17971205 GATTTT-TA-AATCTAAAAA
1 GATTTTATATAATCTAAAAA
17971223 ATTAAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (22 bp):
GATTTTATATAATCTAAAAACG
Found at i:17972814 original size:22 final size:22
Alignment explanation
Indices: 17972795--17972838 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
17972785 AAATTAAATT
17972795 ATTAAA-AATAAATATATAAAA
1 ATTAAATAATAAATATATAAAA
**
17972816 ATTAAATTTTAAATATATAAAA
1 ATTAAATAATAAATATATAAAA
17972838 A
1 A
17972839 GCACAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
ATTAAATAATAAATATATAAAA
Found at i:17972816 original size:15 final size:14
Alignment explanation
Indices: 17972784--17972828 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
17972774 TACCCTCAAC
17972784 AAAATTAAATTATTA
1 AAAATTAAATTA-TA
17972799 AAAA-TAAATATATA
1 AAAATTAAAT-TATA
*
17972813 AAAATTAAATTTTA
1 AAAATTAAATTATA
17972827 AA
1 AA
17972829 TATATAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAAATTAAATTATA
Found at i:17975589 original size:21 final size:21
Alignment explanation
Indices: 17975556--17975604 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
17975546 ATAAATAAAA
17975556 TCATTCA-TGTCAATTCCCTG
1 TCATTCACTGTCAATTCCCTG
*
17975576 TCATTCACTGTCAATTTCCTG
1 TCATTCACTGTCAATTCCCTG
17975597 TCATTCAC
1 TCATTCAC
17975605 AACTTCCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.20, C:0.31, G:0.08, T:0.41
Consensus pattern (21 bp):
TCATTCACTGTCAATTCCCTG
Found at i:17981378 original size:8 final size:8
Alignment explanation
Indices: 17981365--17981391 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
17981355 GTCAATATAT
17981365 TTATTTTA
1 TTATTTTA
17981373 TTATTTTA
1 TTATTTTA
17981381 TTATTTTA
1 TTATTTTA
17981389 TTA
1 TTA
17981392 AAGTTTACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TTATTTTA
Found at i:17982579 original size:26 final size:23
Alignment explanation
Indices: 17982535--17982600 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 23
17982525 CTCACCATAA
* *
17982535 CTCGTATGAGCTTATTGATATATCAG
1 CTCGTAAGAGCTTACTGAT-T-T-AG
*
17982561 CTCGTAAGAGCTAACTGATTTAG
1 CTCGTAAGAGCTTACTGATTTAG
*
17982584 CTCGTCAGAGCTTACTG
1 CTCGTAAGAGCTTACTG
17982601 TTCATCATCT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 17 0.49
24 1 0.03
25 1 0.03
26 16 0.46
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (23 bp):
CTCGTAAGAGCTTACTGATTTAG
Found at i:17984189 original size:9 final size:9
Alignment explanation
Indices: 17984177--17984208 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
17984167 AACTAACTTA
17984177 AAGAACAAC
1 AAGAACAAC
17984186 AAGAACAAC
1 AAGAACAAC
*
17984195 AAGAACAAT
1 AAGAACAAC
17984204 AAGAA
1 AAGAA
17984209 GAGTTGTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.69, C:0.16, G:0.12, T:0.03
Consensus pattern (9 bp):
AAGAACAAC
Found at i:17985955 original size:10 final size:10
Alignment explanation
Indices: 17985940--17985998 Score: 66
Period size: 10 Copynumber: 5.9 Consensus size: 10
17985930 AATTTTAGCT
17985940 TTTATCTTTA
1 TTTATCTTTA
*
17985950 TTTATCCTTA
1 TTTATCTTTA
17985960 TTTATCTTTA
1 TTTATCTTTA
* *
17985970 ATTATTTTTA
1 TTTATCTTTA
*
17985980 TTTAAT-TGTA
1 TTT-ATCTTTA
17985990 TTTATCTTT
1 TTTATCTTT
17985999 TAGAATTTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
9 2 0.05
10 36 0.90
11 2 0.05
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:17985974 original size:14 final size:15
Alignment explanation
Indices: 17985957--17985998 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
17985947 TTATTTATCC
17985957 TTATTTATCTTTAA-
1 TTATTTATCTTTAAT
* *
17985971 TTATTTTTATTTAAT
1 TTATTTATCTTTAAT
17985986 TGTATTTATCTTT
1 T-TATTTATCTTT
17985999 TAGAATTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 12 0.55
15 1 0.05
16 9 0.41
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (15 bp):
TTATTTATCTTTAAT
Found at i:17992330 original size:4 final size:4
Alignment explanation
Indices: 17992321--17992379 Score: 54
Period size: 4 Copynumber: 14.8 Consensus size: 4
17992311 AACCTTTATT
17992321 TTTA TTTA TTTTA TTTTA TTTA -TTA TTTA -TTA TTTA -TTA TATTA TTTA
1 TTTA TTTA -TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA
17992369 -TTA CTTTA TTT
1 TTTA -TTTA TTT
17992380 TTGATATTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
3 12 0.25
4 20 0.42
5 16 0.33
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:17992348 original size:7 final size:7
Alignment explanation
Indices: 17992316--17992390 Score: 72
Period size: 7 Copynumber: 11.1 Consensus size: 7
17992306 AACCCAACCT
17992316 TTATTT-
1 TTATTTA
17992322 TTATTTA
1 TTATTTA
*
17992329 TT-TTATT
1 TTATT-TA
17992336 TTATTTA
1 TTATTTA
17992343 TTATTTA
1 TTATTTA
17992350 TTATTTA
1 TTATTTA
17992357 TTA--TA
1 TTATTTA
17992362 TTATTTA
1 TTATTTA
17992369 TTACTTTA
1 TTA-TTTA
17992377 TT-TTTGA
1 TTATTT-A
17992384 -TATTTA
1 TTATTTA
17992390 T
1 T
17992391 AAAATTCTCT
Statistics
Matches: 58, Mismatches: 2, Indels: 17
0.75 0.03 0.22
Matches are distributed among these distances:
5 5 0.09
6 13 0.22
7 32 0.55
8 8 0.14
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.72
Consensus pattern (7 bp):
TTATTTA
Found at i:17992348 original size:12 final size:12
Alignment explanation
Indices: 17992320--17992379 Score: 66
Period size: 12 Copynumber: 4.7 Consensus size: 12
17992310 CAACCTTTAT
17992320 TTTTATTTATTTTA
1 TTTTATTTA--TTA
17992334 TTTTATTTATTA
1 TTTTATTTATTA
17992346 TTTATTATTTATTA
1 -TT-TTATTTATTA
*
17992360 TATTATTTATTA
1 TTTTATTTATTA
*
17992372 CTTTATTT
1 TTTTATTT
17992380 TTGATATTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
12 19 0.46
13 3 0.07
14 19 0.46
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTATTTATTA
Found at i:17992351 original size:31 final size:30
Alignment explanation
Indices: 17992314--17992381 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 30
17992304 GCAACCCAAC
*
17992314 CTTTATTTTTATTTATTTTA-T-TTTATT-
1 CTTTATTTTTATTTATTATATTATTTATTA
17992341 -TATTATTTATTATTTATTATATTATTTATTA
1 CT-TTATTT-TTATTTATTATATTATTTATTA
17992372 CTTTATTTTT
1 CTTTATTTTT
17992382 GATATTTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
26 1 0.03
27 6 0.18
28 11 0.32
29 1 0.03
30 8 0.24
31 6 0.18
32 1 0.03
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (30 bp):
CTTTATTTTTATTTATTATATTATTTATTA
Found at i:17995171 original size:99 final size:99
Alignment explanation
Indices: 17994991--17995172 Score: 283
Period size: 99 Copynumber: 1.8 Consensus size: 99
17994981 AATAAATTTT
* *
17994991 TTAGGAATATGTTGGGCTGAGTAACTAGGGTGGGGTGCTTGGCTGTCGACTCTCTTCACGTCAAA
1 TTAGGAATATGTTGGGCTAAGTAACCAGGGTGGGGTGCTTGGCTGTCGACTCTCTTCACGTCAAA
* *
17995056 AGGTTCGATATGTTCTTAGGAAAAATATAATAAA
66 AGGTTCAATATATTCTTAGGAAAAATATAATAAA
* * * *
17995090 TTAGGAGTATGTTGGGCTAAGTAACCGGGGTGGGGTGCTTGGCTGTCGTCTCTCTTCGCGTCAAA
1 TTAGGAATATGTTGGGCTAAGTAACCAGGGTGGGGTGCTTGGCTGTCGACTCTCTTCACGTCAAA
*
17995155 AGGTTCAATGTATTCTTA
66 AGGTTCAATATATTCTTA
17995173 AGCAATTGTA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 74 1.00
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (99 bp):
TTAGGAATATGTTGGGCTAAGTAACCAGGGTGGGGTGCTTGGCTGTCGACTCTCTTCACGTCAAA
AGGTTCAATATATTCTTAGGAAAAATATAATAAA
Found at i:17997100 original size:42 final size:42
Alignment explanation
Indices: 17996943--17997100 Score: 158
Period size: 42 Copynumber: 3.7 Consensus size: 42
17996933 AAGTAGTACA
* ** * *
17996943 ATGCCATATCCCCGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATGTCCCAAATATGGTCTTACACGTAATATCATATCG
** * * *
17996985 ATGCCAATAG-CCCAGCTATGGTCTTACACGAAATTTCGTATC-
1 ATGCC-AT-GTCCCAAATATGGTCTTACACGTAATATCATATCG
* *
17997027 AGTGCCATGTCCCAAACATGGTCTTACACGTAATATCATACCG
1 A-TGCCATGTCCCAAATATGGTCTTACACGTAATATCATATCG
*
17997070 ATGCCATGTCCCAAATATGGTCTTATACGTA
1 ATGCCATGTCCCAAATATGGTCTTACACGTA
17997101 TTCTCATCTT
Statistics
Matches: 95, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 61 0.64
43 33 0.35
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATGTCCCAAATATGGTCTTACACGTAATATCATATCG
Found at i:17998352 original size:23 final size:22
Alignment explanation
Indices: 17998326--17998372 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
17998316 TTACAGTAAT
*
17998326 AATAATAATGATAAAAAGAAAAA
1 AATAATAAT-AGAAAAAGAAAAA
17998349 AATAATAATAGAAAAAGAAAAA
1 AATAATAATAGAAAAAGAAAAA
17998371 AA
1 AA
17998373 GTGATGTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.15
Consensus pattern (22 bp):
AATAATAATAGAAAAAGAAAAA
Found at i:17999017 original size:10 final size:10
Alignment explanation
Indices: 17999002--17999060 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
17998992 AATTTTAGCT
17999002 TTTATCTTTA
1 TTTATCTTTA
*
17999012 TTTATCCTTA
1 TTTATCTTTA
*
17999022 TTTAACTTTA
1 TTTATCTTTA
* *
17999032 ATTATTTTTA
1 TTTATCTTTA
*
17999042 TTTAAT-TGTA
1 TTT-ATCTTTA
17999052 TTTATCTTT
1 TTTATCTTT
17999061 TAGAATTTAA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
9 2 0.05
10 34 0.89
11 2 0.05
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:18001140 original size:22 final size:22
Alignment explanation
Indices: 18001115--18001165 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
18001105 GCAATAATCG
18001115 GGCCAGGTTGTGTAATTTACAC
1 GGCCAGGTTGTGTAATTTACAC
18001137 GGCCAGGTTGTGTAATTTACAC
1 GGCCAGGTTGTGTAATTTACAC
18001159 GGCCAGG
1 GGCCAGG
18001166 GCCATTCCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (22 bp):
GGCCAGGTTGTGTAATTTACAC
Found at i:18007496 original size:5 final size:5
Alignment explanation
Indices: 18007486--18007532 Score: 71
Period size: 5 Copynumber: 9.6 Consensus size: 5
18007476 TTGGTATATG
18007486 TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT TGG-T T-GAT GTGGAT TGG
1 TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT -TGGAT TGG
18007533 TCTCAGTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 1 0.03
4 3 0.08
5 32 0.82
6 3 0.08
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (5 bp):
TGGAT
Found at i:18007823 original size:2 final size:2
Alignment explanation
Indices: 18007816--18007884 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
18007806 ACTCAACATT
18007816 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
18007858 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
18007885 TTTATAACTC
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:18010498 original size:46 final size:46
Alignment explanation
Indices: 18010447--18010769 Score: 380
Period size: 46 Copynumber: 7.0 Consensus size: 46
18010437 GTGTGCTTTC
* * *
18010447 TGATATGGAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
18010493 TGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
18010539 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
18010585 GGATATAAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
** * ** * **
18010631 TGA-CGGGAATGAATAAGACCATGGTTGAAACATACCATGGCAATG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *** *
18010676 TAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * * *
18010722 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
18010768 TG
1 TG
18010770 TTAAAGATAA
Statistics
Matches: 240, Mismatches: 35, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
45 35 0.15
46 205 0.85
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:18010695 original size:137 final size:138
Alignment explanation
Indices: 18010455--18010769 Score: 400
Period size: 137 Copynumber: 2.3 Consensus size: 138
18010445 TCTGATATGG
* * **
18010455 AATGTGTAAGACCATGGTTGAAAGATA-TCATGGCAACCTGATATAAAATGTGTAAGACCATGGT
1 AATGTGTAAGACCATGGTTGAAAGATACT-ATGGCAACATGATAGAAAATGAATAAGACCATGGT
* * * ***
18010519 TGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
65 TGAAACATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
* *
18010584 AGGATATAA
130 AGGACAGAA
* **
18010593 AATGTGTAAGACCATGGTTGAAAGATACTATGGCAACATGA-CGGGAATGAATAAGACCATGGTT
1 AATGTGTAAGACCATGGTTGAAAGATACTATGGCAACATGATAGAAAATGAATAAGACCATGGTT
** *
18010657 GAAACATACCATGGCAATGTAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACC
66 GAAACATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
*
18010722 TGACAGAA
131 GGACAGAA
* * * *
18010730 AATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 AATGTGTAAGACCATGGTTGAAAGATACTATGGCAACATG
18010770 TTAAAGATAA
Statistics
Matches: 153, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
137 114 0.75
138 38 0.25
139 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (138 bp):
AATGTGTAAGACCATGGTTGAAAGATACTATGGCAACATGATAGAAAATGAATAAGACCATGGTT
GAAACATACCATGGCAACATAACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
GGACAGAA
Found at i:18011071 original size:16 final size:17
Alignment explanation
Indices: 18011050--18011082 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
18011040 ATGATGGAGT
18011050 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
18011066 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
18011083 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:18012714 original size:53 final size:53
Alignment explanation
Indices: 18012558--18012723 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
18012548 GACGAAAAAT
* **
18012558 ATGTGATAA-GTGCAC-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAATGTG-ACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
18012610 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
18012663 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
18012717 TATGTGA
1 -ATGTGA
18012724 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
52 12 0.12
53 84 0.82
54 1 0.01
55 6 0.06
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:18015868 original size:22 final size:22
Alignment explanation
Indices: 18015843--18015885 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
18015833 TCATATGACA
*
18015843 GATT-TTATACATTTTCATTAAC
1 GATTATTA-ACATCTTCATTAAC
*
18015865 GATTATTAACATCTTCCTTAA
1 GATTATTAACATCTTCATTAA
18015886 AGATCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.33, C:0.16, G:0.05, T:0.47
Consensus pattern (22 bp):
GATTATTAACATCTTCATTAAC
Found at i:18016537 original size:22 final size:24
Alignment explanation
Indices: 18016499--18016548 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 24
18016489 TTATACATTC
*
18016499 TTTAGAATTAATTTTTTTTTAAAT
1 TTTAGAATTAATTTTTTTGTAAAT
*
18016523 TTTA-AATT-ATTTTTTTGTAATT
1 TTTAGAATTAATTTTTTTGTAAAT
18016545 TTTA
1 TTTA
18016549 TTAAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 16 0.67
23 4 0.17
24 4 0.17
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (24 bp):
TTTAGAATTAATTTTTTTGTAAAT
Found at i:18027104 original size:19 final size:19
Alignment explanation
Indices: 18027058--18027105 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
18027048 GTTTATATTT
18027058 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
18027076 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
18027095 TAAGTTTTATT
1 TAAATTTTATT
18027106 CATATTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:18030863 original size:19 final size:19
Alignment explanation
Indices: 18030817--18030864 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
18030807 GTATATATTT
18030817 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
18030835 TAAATCTTATTTAGTTAGA
1 TAAATTTTATTTAGGTAGA
18030854 TAAATTTTATT
1 TAAATTTTATT
18030865 CCTATTTTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:18032874 original size:14 final size:14
Alignment explanation
Indices: 18032855--18032889 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
18032845 ATTTTAAAAC
18032855 AAGAAAACAATTTA
1 AAGAAAACAATTTA
18032869 AAGAAAACAATTTA
1 AAGAAAACAATTTA
*
18032883 AGGAAAA
1 AAGAAAA
18032890 TTTTTATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.66, C:0.06, G:0.11, T:0.17
Consensus pattern (14 bp):
AAGAAAACAATTTA
Found at i:18033295 original size:17 final size:17
Alignment explanation
Indices: 18033273--18033308 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
18033263 TGGCATTAAC
*
18033273 AAAACTGTACATAAGAA
1 AAAACTGCACATAAGAA
18033290 AAAACTGCACATAAGAA
1 AAAACTGCACATAAGAA
18033307 AA
1 AA
18033309 GGTAGTTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.61, C:0.14, G:0.11, T:0.14
Consensus pattern (17 bp):
AAAACTGCACATAAGAA
Found at i:18033489 original size:21 final size:21
Alignment explanation
Indices: 18033459--18033504 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
18033449 TATTAGGCTC
18033459 AAAA-AATGAGTTTGGAAAAA
1 AAAAGAATGAGTTTGGAAAAA
18033479 AAAAGAATGAGTTTGGAAAAA
1 AAAAGAATGAGTTTGGAAAAA
18033500 AAAAG
1 AAAAG
18033505 GCCCATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.16
21 21 0.84
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17
Consensus pattern (21 bp):
AAAAGAATGAGTTTGGAAAAA
Found at i:18043176 original size:18 final size:18
Alignment explanation
Indices: 18043149--18043186 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
18043139 AATAAAGCTT
*
18043149 TAATTGTTATCATAATTA
1 TAATTATTATCATAATTA
18043167 TAATTATTATCATAATTA
1 TAATTATTATCATAATTA
18043185 TA
1 TA
18043187 CCTAAATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (18 bp):
TAATTATTATCATAATTA
Found at i:18044797 original size:12 final size:13
Alignment explanation
Indices: 18044775--18044800 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18044765 CCTGACACCC
18044775 TTTTACTTTTTTT
1 TTTTACTTTTTTT
18044788 TTTTACTTTTTTT
1 TTTTACTTTTTTT
18044801 AACTTTTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTACTTTTTTT
Found at i:18044942 original size:21 final size:23
Alignment explanation
Indices: 18044897--18044960 Score: 87
Period size: 23 Copynumber: 2.8 Consensus size: 23
18044887 AAATTTGAGT
*
18044897 TATATATTTGAAATGTTTTATAA
1 TATATATTTGAAATATTTTATAA
*
18044920 TATATATTTTAAA-ATTTTA-AA
1 TATATATTTGAAATATTTTATAA
18044941 TATATATTTGAAATTATTTT
1 TATATATTTGAAA-TATTTT
18044961 TTAAAATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 14 0.39
22 5 0.14
23 17 0.47
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (23 bp):
TATATATTTGAAATATTTTATAA
Found at i:18044981 original size:21 final size:21
Alignment explanation
Indices: 18044946--18045005 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 21
18044936 TTAAATATAT
*
18044946 ATTTGAAAT-TATTTTTTAAA
1 ATTTTAAATATATTTTTTAAA
*
18044966 ATTTTAAATATATTTTTT-TA
1 ATTTTAAATATATTTTTTAAA
*
18044986 ATATTAAATATATTTTTTAA
1 ATTTTAAATATATTTTTTAA
18045006 TAATATAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 26 0.76
21 8 0.24
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTTAAATATATTTTTTAAA
Found at i:18045014 original size:21 final size:21
Alignment explanation
Indices: 18044951--18045020 Score: 78
Period size: 20 Copynumber: 3.5 Consensus size: 21
18044941 TATATATTTG
*
18044951 AAAT-TATTTTTTAA-AATTTT
1 AAATATATTTTTTAATAA-TAT
18044971 AAATATATTTTTT--TAATATT
1 AAATATATTTTTTAATAATA-T
18044991 AAATATATTTTTTAATAATAT
1 AAATATATTTTTTAATAATAT
18045012 AAA-ATATTT
1 AAATATATTT
18045021 AAATATTTTA
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
19 1 0.02
20 26 0.59
21 12 0.27
22 5 0.11
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
AAATATATTTTTTAATAATAT
Found at i:18045118 original size:13 final size:13
Alignment explanation
Indices: 18045100--18045124 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18045090 GTTTTATAAT
18045100 ATTTTAAATTATG
1 ATTTTAAATTATG
18045113 ATTTTAAATTAT
1 ATTTTAAATTAT
18045125 TTTTAAAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
ATTTTAAATTATG
Found at i:18045217 original size:21 final size:21
Alignment explanation
Indices: 18045157--18045248 Score: 86
Period size: 17 Copynumber: 4.5 Consensus size: 21
18045147 TTTTAAATTC
*
18045157 TATTTAAAAGTTAAAAAA-AA
1 TATTTAAAATTTAAAAAATAA
*
18045177 TATTT--TATTT-AAAAAT-A
1 TATTTAAAATTTAAAAAATAA
*
18045194 TATTTAATATTTAAAAAATAA
1 TATTTAAAATTTAAAAAATAA
*
18045215 TATTTAAAATTTTAAAATATATA
1 TATTTAAAA-TTTAAAAAATA-A
18045238 TATTATAAAAT
1 TATT-TAAAAT
18045249 ATTTTAAATA
Statistics
Matches: 60, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
17 11 0.18
18 3 0.05
19 5 0.08
20 11 0.18
21 9 0.15
22 10 0.17
23 6 0.10
24 5 0.08
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (21 bp):
TATTTAAAATTTAAAAAATAA
Found at i:18045259 original size:23 final size:22
Alignment explanation
Indices: 18045184--18045279 Score: 90
Period size: 22 Copynumber: 4.3 Consensus size: 22
18045174 AAATATTTTA
18045184 TTTAAAAATATATTT--AATAT
1 TTTAAAAATATATTTAAAATAT
*
18045204 TTAAAAAATAATATTTAAAAT-T
1 TTTAAAAAT-ATATTTAAAATAT
*
18045226 TTAAAATATATATATTATAAAATAT
1 TTTAAA-A-ATATATT-TAAAATAT
* * *
18045251 TTTAAATATATATTTTAAATTT
1 TTTAAAAATATATTTAAAATAT
18045273 TTTAAAA
1 TTTAAAA
18045280 TTAATAATGA
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
20 8 0.13
21 6 0.10
22 19 0.30
23 16 0.25
24 8 0.13
25 6 0.10
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTAAAAATATATTTAAAATAT
Found at i:18045280 original size:23 final size:23
Alignment explanation
Indices: 18045191--18045280 Score: 96
Period size: 23 Copynumber: 3.9 Consensus size: 23
18045181 TTATTTAAAA
* *
18045191 ATATATTTAATA-TTTAAAAAAT
1 ATATATTTAAAATTTTAAAATAT
18045213 A-ATATTTAAAATTTTAAAATAT
1 ATATATTTAAAATTTTAAAATAT
*
18045235 ATATATTATAAAATATTTTAAATAT
1 ATATATT-TAAAAT-TTTAAAATAT
*
18045260 ATAT-TTTAAATTTTTTAAAAT
1 ATATATTTAAA-ATTTTAAAAT
18045281 TAATAATGAA
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
21 9 0.16
22 11 0.19
23 16 0.28
24 9 0.16
25 13 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
ATATATTTAAAATTTTAAAATAT
Found at i:18046932 original size:16 final size:15
Alignment explanation
Indices: 18046911--18046958 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
18046901 GATGTGAATA
18046911 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
18046927 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
18046942 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
18046958 A
1 A
18046959 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:18046934 original size:24 final size:24
Alignment explanation
Indices: 18046907--18046962 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
18046897 TAATGATGTG
*
18046907 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
18046931 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
18046955 AATAATAA
1 AATAATAA
18046963 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:18046941 original size:8 final size:8
Alignment explanation
Indices: 18046907--18046958 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
18046897 TAATGATGTG
*
18046907 AATAATAA
1 AATATTAA
18046915 AATATATAA
1 AATAT-TAA
18046924 AATA-TAA
1 AATATTAA
18046931 AATATTAA
1 AATATTAA
*
18046939 AATATCAA
1 AATATTAA
*
18046947 AATATTAG
1 AATATTAA
18046955 AATA
1 AATA
18046959 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:18047128 original size:20 final size:20
Alignment explanation
Indices: 18047076--18047132 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
18047066 ATACTACATC
*
18047076 AATATGTACATATATAAAAAA
1 AATATGTACATA-ATATAAAA
* * *
18047097 AATACGT-GATAATATTAAA
1 AATATGTACATAATATAAAA
18047116 AATATGTACATAATATA
1 AATATGTACATAATATA
18047133 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AATATGTACATAATATAAAA
Found at i:18047222 original size:25 final size:25
Alignment explanation
Indices: 18047105--18047325 Score: 115
Period size: 25 Copynumber: 9.0 Consensus size: 25
18047095 AAAATACGTG
* *
18047105 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
18047130 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
18047155 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * *
18047177 ATAACATGTAAAAAAAAATATATAAATAAT
1 ATAATAT-T----AAAGATATATACATAAT
*
18047207 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * *
18047232 ATAGTA-TAATATATATATACGTAAT
1 ATAATATTAA-AGATATATACATAAT
* *
18047257 ATAGA-ATTTAA-A-ATATACCTAAT
1 ATA-ATATTAAAGATATATACATAAT
* *
18047280 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
*
18047302 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
18047325 A
1 A
18047326 ACAAAAAAAA
Statistics
Matches: 152, Mismatches: 28, Indels: 34
0.71 0.13 0.16
Matches are distributed among these distances:
21 4 0.03
22 27 0.18
23 28 0.18
24 11 0.07
25 60 0.39
26 2 0.01
29 1 0.01
30 19 0.12
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:18047872 original size:29 final size:29
Alignment explanation
Indices: 18047818--18047970 Score: 245
Period size: 29 Copynumber: 5.2 Consensus size: 29
18047808 TAGGTACAAG
*
18047818 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGA-AAAGTGTGGCTAGTGGAGT
*
18047848 TGGTGGTGGAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGTGTGGCTAGTGGAGT
18047877 TGGT-GTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAA-GTGTGGCTAGTGGAGT
*
18047906 TGGTGGTGGAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGTGTGGCTAGTGGAGT
18047935 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAA-GTGTGGCTAGTGGAGT
18047965 TGGTGG
1 TGGTGG
18047971 GCTAGGTTTA
Statistics
Matches: 115, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
28 8 0.07
29 68 0.59
30 39 0.34
ACGTcount: A:0.20, C:0.03, G:0.50, T:0.26
Consensus pattern (29 bp):
TGGTGGTGGAAAAGTGTGGCTAGTGGAGT
Found at i:18047913 original size:58 final size:59
Alignment explanation
Indices: 18047818--18047970 Score: 290
Period size: 58 Copynumber: 2.6 Consensus size: 59
18047808 TAGGTACAAG
*
18047818 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
18047877 TGGT-GTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
18047935 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGG
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGG
18047971 GCTAGGTTTA
Statistics
Matches: 92, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
58 57 0.62
59 35 0.38
ACGTcount: A:0.20, C:0.03, G:0.50, T:0.26
Consensus pattern (59 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGAGTGGCTAGTGGAGT
Found at i:18048828 original size:13 final size:14
Alignment explanation
Indices: 18048780--18048842 Score: 74
Period size: 14 Copynumber: 4.5 Consensus size: 14
18048770 GAGTTGATTT
* *
18048780 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
18048794 TTGGAAAAACAGAAA
1 TT-GAAAAACAGAAA
*
18048809 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
*
18048823 TT-AAAAACAGAAT
1 TTGAAAAACAGAAA
18048836 TTGAAAA
1 TTGAAAA
18048843 GACCTCAGCG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 11 0.26
14 19 0.45
15 12 0.29
ACGTcount: A:0.60, C:0.05, G:0.14, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:18048933 original size:13 final size:14
Alignment explanation
Indices: 18048897--18048931 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
18048887 GAGTTGATTT
18048897 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
18048911 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
18048925 TGGAAAA
1 TTGAAAA
18048932 CACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.63, C:0.06, G:0.17, T:0.14
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:18049111 original size:14 final size:14
Alignment explanation
Indices: 18049092--18049154 Score: 58
Period size: 14 Copynumber: 4.5 Consensus size: 14
18049082 GAGTTGATTT
*
18049092 TTGAAAAATATAAA
1 TTGAAAAATAGAAA
18049106 TTGAAAAAATAGAAA
1 TTG-AAAAATAGAAA
*
18049121 TT-AAAAAGCAGAAA
1 TTGAAAAA-TAGAAA
* *
18049135 TT-AAAAACAGAAT
1 TTGAAAAATAGAAA
18049148 TTGAAAA
1 TTGAAAA
18049155 GACCTCAGTG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
13 12 0.28
14 19 0.44
15 12 0.28
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.22
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:18049305 original size:77 final size:76
Alignment explanation
Indices: 18049137--18049916 Score: 560
Period size: 77 Copynumber: 10.1 Consensus size: 76
18049127 AGCAGAAATT
* * * * * * *
18049137 AAAAACAGAATTTGAAAAGACCTCAGTGTGTGGCCCGAGACTCAACTCACCTCTCGCAATATAAG
1 AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
18049202 TTGA-TTTTTG
66 TTGATTTTTTG
*
18049212 AAAAGCAGAAATTGAAAATGCCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
18049277 TTGATTCTTTTG
66 TTGATT-TTTTG
**
18049289 AAAAGCAGAAATTGAAAACGCCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
18049354 TTGATTCTTTTG
66 TTGATT-TTTTG
* * ** *** * *
18049366 AAAAGTAGAAATT-AAAA-AGCAGAAATTGAAAAT-ACCTCAGTGTGTCCCGAGGCTCAACTCAC
1 AAAAGCAGAAATTGAAAATACCTCAGCGTG----TGACC-C-GAG-G-CTC-A-----A-CTCAC
*
18049428 CTCTCGCAATGTGAGTTGATTTTTTTG
51 CTCTCGCAATATGAGTTGA-TTTTTTG
** *
18049455 ATAAAAATAGAATTTGAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATG
1 --AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
18049518 AGTTGATGTTTTTG
64 AGTTGAT-TTTTTG
* *** * * * ** *
18049532 AAAAACAGAAATTGAAGAACAAAAATGGAAAACA-CCTCAGCGTCTTGAGGTTCAACTCACCTCT
1 AAAAGCAGAAATT---G----AAAAT--ACCTCAGCGT--GTGACCCGAGGCTCAACTCACCTCT
*
18049596 CGCAATATGAGCTGATTTTTTTG
55 CGCAATATGAGTTGA-TTTTTTG
* * ** * *
18049619 -AAAGACAGAAATTGAAAATACCTCA--ATGTGTCTTGAGGCTCAACTTATCTCTCGCAATATGA
1 AAAAG-CAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
18049681 GTTGA-TTTTTG
65 GTTGATTTTTTG
* * * * * *
18049692 ACAAA-CAAAAATTGAAATTACCTCAGCGTCTTA----AGGTTCAACTCACCTCTTGCAATATGA
1 A-AAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
18049752 GCTGATTTTTTTT
65 GTTGA-TTTTTTG
* **
18049765 AAAAGACAGAAATTGAAAATACCTCAACGTGTGAAACGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAG-CAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
18049830 GTTGATTTTTTTG
65 GTTGA-TTTTTTG
* * * **
18049843 --ATG-ATAAATTGAAAATACCTCA--ATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
18049903 TTGA-TTTTTG
66 TTGATTTTTTG
18049913 AAAA
1 AAAA
18049917 ATAAATTAAA
Statistics
Matches: 573, Mismatches: 80, Indels: 107
0.75 0.11 0.14
Matches are distributed among these distances:
70 6 0.01
71 27 0.05
72 42 0.07
73 30 0.05
74 41 0.07
75 116 0.20
76 8 0.01
77 123 0.21
78 44 0.08
79 2 0.00
80 7 0.01
81 1 0.00
82 7 0.01
83 4 0.01
84 6 0.01
85 2 0.00
86 5 0.01
87 47 0.08
88 4 0.01
89 29 0.05
90 2 0.00
91 11 0.02
92 4 0.01
93 5 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28
Consensus pattern (76 bp):
AAAAGCAGAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTG
Found at i:18049443 original size:89 final size:90
Alignment explanation
Indices: 18049289--18049455 Score: 273
Period size: 89 Copynumber: 1.9 Consensus size: 90
18049279 GATTCTTTTG
*
18049289 AAAAGCAGAAATTGAAAACGCCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGCAGAAATTGAAAACACCTCA-CGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
18049354 TTGATTCTTTTGAAAAGTAGAAATTA
65 TTGATTCTTTTGAAAAGTAGAAATTA
* * *
18049380 AAAAGCAGAAATTGAAAATACCTCA-GTGTGTCCCGAGGCTCAACTCACCTCTCGCAATGTGAGT
1 AAAAGCAGAAATTGAAAACACCTCACGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
18049444 TGATTTTTTTGA
66 TGATTCTTTTGA
18049456 TAAAAATAGA
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
89 48 0.68
91 23 0.32
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (90 bp):
AAAAGCAGAAATTGAAAACACCTCACGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTCTTTTGAAAAGTAGAAATTA
Found at i:18049897 original size:72 final size:73
Alignment explanation
Indices: 18049575--18049911 Score: 385
Period size: 72 Copynumber: 4.6 Consensus size: 73
18049565 ACCTCAGCGT
* *
18049575 CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATAC
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-AAAGA-AGAAATTGAAAATAC
*
18049640 CTCAATGTGT
64 CTCAATGTGA
* * ** * *
18049650 CTTGAGGCTCAACTTATCTCTCGCAATATGAGTTGATTTTTGACAAACAA-AAATTGAAATTACC
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-TTAAAGAAGAAATTGAAAATACC
* *
18049714 TC-A-GCGT
65 TCAATGTGA
* * * *
18049721 CTTAAGGTTCAACTCACCTCTTGCAATATGAGCTGATTTTTTTTAAAAGACAGAAATTGAAAATA
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT-AAAGA-AGAAATTGAAAATA
18049786 CCTCAACGTGTGA
63 CCTCAA--TGTGA
*** * * *
18049799 AACGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATG-ATAAATTGAAAATACCT
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAGAAGAAATTGAAAATACCT
18049863 CAATGTGA
66 CAATGTGA
18049871 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
18049912 GAAAAATAAA
Statistics
Matches: 219, Mismatches: 34, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
71 33 0.15
72 53 0.24
73 16 0.07
74 35 0.16
75 42 0.19
76 2 0.01
77 7 0.03
78 31 0.14
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (73 bp):
CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAGAAGAAATTGAAAATACCT
CAATGTGA
Found at i:18050062 original size:74 final size:73
Alignment explanation
Indices: 18049560--18050543 Score: 335
Period size: 73 Copynumber: 12.8 Consensus size: 73
18049550 ACAAAAATGG
* * * * * *
18049560 AAAACACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAG
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA--TTTTTGAAAA
*
18049623 ACAGAAATTG
64 ACAGAAATTA
** * * * * *
18049633 AAAATACCTCAATGTGTCTTGAGGCTCAACTTATCTCTCGCAATATGAGTTGATTTTTGACAAAC
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAAC
* *
18049698 AAAAATTG
66 AGAAATTA
* * * * ** * *
18049706 AAATTACCTCAGC--GTCTTAAGGTTCAACTCACCTCTTGCAATATGAGCTGATTTTTTTTAAAA
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA--TTTTTGAAAA
*
18049769 GACAGAAATTG
64 -ACAGAAATTA
* * * ***
18049780 AAAATACCTCAACGTGTGAAAC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-TTG
1 AAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAA
** * *
18049843 ATGATAAATTG
63 AACAGAAATTA
** * * *
18049854 AAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAA-
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAAC
*
18049917 ATAAATTAA
66 AGAAATT-A
* ** * * * * * * *
18049926 AACACAAAAAT-TGACAAT-ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AA-A-ATACCTCAG-C-GTGTCCT--GAG-G-CTC-A---AC---TCACCTCTCACAATATGAGT
*
18049989 TGAATTTTGAAAAACAGAAATTTA
51 TGATTTTTGAAAAACAGAAA-TTA
* *
18050013 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTTAAC
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA---TTTTTGAAA
*
18050078 AACAGAAATTG
63 AACAGAAATTA
* * **
18050089 AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT-AGCAATATGAGTTGATTTTTTTTACG
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCA-CAATATGAGTTGA--TTTTTGAAA
18050153 AACAGAAATTGA
63 AACAGAAATT-A
* ** * * * * * *
18050165 AGAACAGAAATTGAAAAGACCTCAG-CATGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGA
1 A-AA-A-TACCT---CAG-CGT--GTCCTGAG-GCTC-A-ACTC-----ACCTCTCACAATATGA
* * *
18050228 GTTAATTTTTGACAAACAGAAATTG
49 GTTGATTTTTGAAAAACAGAAATTA
* * * *
18050253 AAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAAC
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAAC
18050318 AGAAATTGA
66 AGAAATT-A
* ** * *** * * **
18050327 AAACCAGAAATTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTTGCAATATGAG
1 AAA--A-TACCTCAGCGT--GTC--C-TGAG-GCTCAA--CT-----CACCTCTCACAATATGAG
* * ** *
18050391 CTAATTTTTGATGAACATAAATTA
50 TTGATTTTTGAAAAACAGAAATTA
** * * * *
18050415 AAACCACCTCAGCATGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAAC
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAAC
* *
18050480 AAAAATTG
66 AGAAATTA
* * * *
18050488 AAATTACCTCAGC--GTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
18050544 TTTGAAACAT
Statistics
Matches: 692, Mismatches: 143, Indels: 154
0.70 0.14 0.16
Matches are distributed among these distances:
71 79 0.11
72 41 0.06
73 129 0.19
74 73 0.11
75 56 0.08
76 62 0.09
77 22 0.03
78 36 0.05
79 10 0.01
80 11 0.02
81 6 0.01
82 11 0.02
83 8 0.01
84 8 0.01
85 46 0.07
86 9 0.01
87 9 0.01
88 7 0.01
89 51 0.07
91 18 0.03
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (73 bp):
AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAAC
AGAAATTA
Found at i:18050114 original size:235 final size:233
Alignment explanation
Indices: 18049694--18050722 Score: 824
Period size: 235 Copynumber: 4.4 Consensus size: 233
18049684 GATTTTTGAC
* *** * * *
18049694 AAACAAAAATTGAAATTACCTCAGCGT--CTTAAGGTTCAACTCACCTCTTGCAATATGAGCTGA
1 AAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
18049757 TTTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTGAAAC-GAGGCTCAACTCACCTCTC
66 --ATTTTGAAAA-ACAGAAATTGAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTC
* ** * ** * *
18049821 GCAATATGAGTTGA--TTTTTTT-GATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAA
125 GCAATATGAGTTGATTTTTTTTTAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAA
*
18049883 CTCACCTCTCGCAATATGAGTTGATTTTTGA-AAAATAAATTAA
190 CTCACCTCTCGCAATATGAGTTGATTTTTGAGAACATAAATTAA
*
18049926 AACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AA-ACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
18049991 AATTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAA
65 AATTTTGAAAAACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
*
18050056 TATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
129 TATGAGTTGATTTTTTTTTAA-AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTC
* * *
18050121 ACCTCTAGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAA
193 ACCTCTCGCAATATGAGTTGA--TTTTTGA-GAACATAAATT-AA
* * * **
18050166 GAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAACAAAAATTGAAAATACCTCAGC--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
18050231 -AATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
64 GAA-TTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* * *
18050295 ATATGAGTCGATTTTTGAAAAACAGAAATTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAG
128 ATATGAGTTGATTTTT-----------TTTTAAAA-CAGAAATTGAAAATACCTCAGCGTGT---
* * * *
18050360 CC-AAGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATT-A
178 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-GAACATAAATTAA
* * * * *
18050415 AAAC------------CACCTCAGCATGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * * * *
18050468 TTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACTTCTCGCAATA
66 ATTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
*
18050531 TGAGTTGATTTTTTTTGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTG
131 TGAGTTGA--TTTTTT------T---TT-AAAACA-G-AAATTGAAAATACCTCAGCGTGTCCTG
18050596 AGGCTCAACTCACCTCTCGCAATATGA---G----TT--G-----AAATTAA
182 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAGAACATAAATTAA
* * *
18050634 AACACAAAAATTGAAAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTTGCAATATGAGCTG
1 AA-ACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
18050699 -ATTTTGAAAAAGTAGAAATT-AAAA
65 AATTTTGAAAAA-CAGAAATTGAAAA
18050723 GGTTCAACCC
Statistics
Matches: 653, Mismatches: 81, Indels: 127
0.76 0.09 0.15
Matches are distributed among these distances:
218 5 0.01
219 3 0.00
220 2 0.00
223 1 0.00
226 2 0.00
230 2 0.00
231 44 0.07
232 57 0.09
233 118 0.18
234 5 0.01
235 177 0.27
236 1 0.00
237 14 0.02
239 28 0.04
240 61 0.09
241 51 0.08
249 4 0.01
250 2 0.00
251 45 0.07
253 29 0.04
254 2 0.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (233 bp):
AAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
ATTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTTTAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTTGAGAACATAAATTAA
Found at i:18050124 original size:76 final size:74
Alignment explanation
Indices: 18049933--18050165 Score: 312
Period size: 74 Copynumber: 3.1 Consensus size: 74
18049923 TAAAACACAA
* * * *
18049933 AAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTT
1 AAATTGA-AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTT
* *
18049996 TGAAAAACAG
65 TTAACAACAG
*
18050006 AAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
1 AAA-TT-GAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTT
18050071 TTTTAACAACAG
63 TTTTAACAACAG
18050083 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT-AGCAATATGAGTTGATTTTT
1 AAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCA-CAATATGAGTTGATTTTT
18050147 TTT-ACGAACAG
64 TTTAAC-AACAG
18050158 AAATTGAA
1 AAATTGAA
18050166 GAACAGAAAT
Statistics
Matches: 144, Mismatches: 8, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
73 3 0.02
74 52 0.36
75 26 0.18
76 49 0.34
77 14 0.10
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (74 bp):
AAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTT
TAACAACAG
Found at i:18050171 original size:14 final size:14
Alignment explanation
Indices: 18050152--18050179 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
18050142 TTTTTTTTAC
18050152 GAACAGAAATTGAA
1 GAACAGAAATTGAA
18050166 GAACAGAAATTGAA
1 GAACAGAAATTGAA
18050180 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:18050247 original size:89 final size:89
Alignment explanation
Indices: 18050078--18050254 Score: 243
Period size: 89 Copynumber: 2.0 Consensus size: 89
18050068 TTTTTTTAAC
** *
18050078 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
* * *
18050143 TTTTTTTACGAACAGAAATTGAAG
66 ATTTTTGACAAACAGAAATTGAAG
*
18050167 AACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
18050231 -A-ATTTTTGACAAACAGAAATTGAA
63 GATATTTTTGACAAACAGAAATTGAA
18050255 ATTACCTCAG
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
89 42 0.54
90 1 0.01
91 33 0.42
92 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (89 bp):
AACAGAAATTGAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
ATTTTTGACAAACAGAAATTGAAG
Found at i:18050328 original size:14 final size:14
Alignment explanation
Indices: 18050309--18050343 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
18050299 GAGTCGATTT
18050309 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
18050323 TTGAAAACCAGAAA
1 TTGAAAAACAGAAA
18050337 TTGAAAA
1 TTGAAAA
18050344 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:18050387 original size:162 final size:160
Alignment explanation
Indices: 18049999--18050490 Score: 648
Period size: 162 Copynumber: 3.0 Consensus size: 160
18049989 TGAATTTTGA
* *
18049999 AAAACAGAAATTTAAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCACAATATGA
1 AAAACAGAAA-TTGAAAATACCTCAGCGTGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGA
* *
18050061 GTTGATTTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
64 GTT-A--ATTTTTGAA-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* * *
18050126 TAGCAATATGAGTTGATTTTTTTTACGAACAGAAATTG
125 TCGCAATATGAGTTGA--TTTTTGACAAACAGAAATTG
* *
18050164 AAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-AACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
18050229 TTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGC
65 TTAATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* *
18050294 AATATGAGTCGATTTTTGAAAAACAGAAATTG
129 AATATGAGTTGATTTTTGACAAACAGAAATTG
* *
18050326 AAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAG
1 AAAA-CAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * ** * *
18050391 CTAATTTTTGATGAACATAAATTAAAACCACCTCAGCATGTCCTGAGACTCAACTCACCTCTCGC
65 TTAATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
*
18050456 AATATGAGTTGATTTTTGACAAACAAAAATTG
129 AATATGAGTTGATTTTTGACAAACAGAAATTG
18050488 AAA
1 AAA
18050491 TTACCTCAGC
Statistics
Matches: 292, Mismatches: 29, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
161 2 0.01
162 162 0.55
164 67 0.23
165 20 0.07
166 9 0.03
167 30 0.10
168 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (160 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TAATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTGACAAACAGAAATTG
Found at i:18050398 original size:89 final size:87
Alignment explanation
Indices: 18050236--18050420 Score: 241
Period size: 89 Copynumber: 2.1 Consensus size: 87
18050226 GAGTTAATTT
* *
18050236 TTGACAAA-CAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGA-AAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATG
*
18050300 AGTCGATTTTTGAAAAACAGAAA
65 AGTCAATTTTTGAAAAACAGAAA
* *
18050323 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGT--CCCAAGGCTCAACTCACCTCTCGCAATAT
** *
18050388 GAG-CTAATTTTTGATGAACATAAA
64 GAGTC-AATTTTTGAAAAACAGAAA
18050412 TT-AAAACCA
1 TTGAAAACCA
18050421 CCTCAGCATG
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
86 3 0.03
87 29 0.34
88 8 0.09
89 46 0.53
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (87 bp):
TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCGCAATATGA
GTCAATTTTTGAAAAACAGAAA
Found at i:18050672 original size:72 final size:73
Alignment explanation
Indices: 18050554--18050695 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 73
18050544 TTTGAAACAT
*
18050554 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
18050619 ATGAGTTG
66 ATGAGTTG
* *
18050627 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTTGCAA
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAA
18050690 TATGAG
65 TATGAG
18050696 CTGATTTTGA
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
71 3 0.05
72 57 0.88
73 5 0.08
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.23
Consensus pattern (73 bp):
AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTG
Found at i:18050722 original size:160 final size:157
Alignment explanation
Indices: 18050420--18050709 Score: 406
Period size: 160 Copynumber: 1.8 Consensus size: 157
18050410 AATTAAAACC
** *
18050420 ACCTCAGCATGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
1 ACCTCAGCATGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAA
* * * *
18050485 TTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAA
66 TTGAAAATACCTCAGCGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA---TTTTTGAA
*
18050550 ACATAAATTAAAAAAACGAAAATTGAAAAT
128 AAATAAATTAAAAAAACGAAAATTGAAAAT
* *
18050580 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAA
1 ACCTCAGCATGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAA-ACAAAA
*
18050643 ATTGAAAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTGAA
65 ATTGAAAATACCTCAGCGT--CTCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAA
18050707 AAA
128 AAA
18050710 GTAGAAATTA
Statistics
Matches: 116, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
157 9 0.08
158 3 0.03
159 26 0.22
160 46 0.40
161 32 0.28
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (157 bp):
ACCTCAGCATGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAA
TTGAAAATACCTCAGCGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAA
TAAATTAAAAAAACGAAAATTGAAAAT
Found at i:18051031 original size:76 final size:76
Alignment explanation
Indices: 18050938--18051170 Score: 343
Period size: 76 Copynumber: 3.1 Consensus size: 76
18050928 CCGAGCCGAT
** *
18050938 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAG-AATTGAAAATACCTCA
1 GCTCAACTCATTTCTCGCAATATAAGTTGA-TTTTTTTTTGAAAACAGAAATTGAAATTACCTCA
* *
18051002 ACGTGTCTTGAG
65 GCGTGTCCTGAG
*
18051014 GCTCAACTCATTTCTCGCAATATAAGTTGA----ATTTTGAAAACAGAAATTGAAATTACCTCAG
1 GCTCAACTCATTTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTACCTCAG
18051075 CGTGTCCTGAG
66 CGTGTCCTGAG
*
18051086 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTT-AACAACAGAAATTGAAATTACCTCA
1 GCTCAACTCATTTCTCGCAATATAAGTTGATTTTTTTTTGAA-AACAGAAATTGAAATTACCTCA
18051150 GCGTGTCCTGAG
65 GCGTGTCCTGAG
18051162 GCTCAACTC
1 GCTCAACTC
18051171 TAGCAATATG
Statistics
Matches: 143, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
71 12 0.08
72 54 0.38
75 2 0.01
76 75 0.52
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (76 bp):
GCTCAACTCATTTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTACCTCAG
CGTGTCCTGAG
Found at i:18051356 original size:71 final size:70
Alignment explanation
Indices: 18051208--18051383 Score: 212
Period size: 71 Copynumber: 2.5 Consensus size: 70
18051198 AAAAATTAAA
* * * * * * **
18051208 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
18051272 CCCCG
66 CCCCG
*
18051277 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAAAAAAAACTAAAAATACCTCAACGT
* **
18051342 GTCTTG
65 GCCCCG
18051348 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
18051384 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.07
71 60 0.65
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:18059824 original size:19 final size:20
Alignment explanation
Indices: 18059800--18059837 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
18059790 CATATATAAA
18059800 AAAAATACGTG-ATAATATT
1 AAAAATACGTGCATAATATT
*
18059819 AAAAATATGTGCATAATAT
1 AAAAATACGTGCATAATAT
18059838 AGTGTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32
Consensus pattern (20 bp):
AAAAATACGTGCATAATATT
Found at i:18059937 original size:34 final size:36
Alignment explanation
Indices: 18059870--18059955 Score: 88
Period size: 34 Copynumber: 2.4 Consensus size: 36
18059860 TATAGTTAAG
* *
18059870 ATATATACATAAGATAACATGTAAAAAATATATATAT
1 ATATATA-ATAATATAACATGTAAAAAATATATACAT
* *
18059907 ATATATAATAATATAATAT-T-AAAGATATATACAT
1 ATATATAATAATATAACATGTAAAAAATATATACAT
*
18059941 AAATAGT-ATAATATA
1 ATATA-TAATAATATA
18059956 TATACGTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
34 24 0.56
35 2 0.05
36 10 0.23
37 7 0.16
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (36 bp):
ATATATAATAATATAACATGTAAAAAATATATACAT
Found at i:18060003 original size:83 final size:83
Alignment explanation
Indices: 18059833--18060004 Score: 181
Period size: 83 Copynumber: 2.1 Consensus size: 83
18059823 ATATGTGCAT
* *
18059833 AATATAGTGTTAAAAATACATACATAATATAGTTAAGATATATACATAAGATAACATGTAAAAAA
1 AATATAATATTAAAAATACATACATAATATAGTTAAGATATATACATAAGATAACATGTAAAAAA
* *
18059898 TATATATATATATATAAT
66 TATATATATATATAAAAG
* * * * * *
18059916 AATATAATATTAAAGATATATACATAA-ATAGTATAATATATATACGTAATATAGA-ATTTAAAA
1 AATATAATATTAAAAATACATACATAATATAGT-TAAGATATATACATAAGATA-ACATGTAAAA
*
18059979 TATACCTA-ATATAT-TAAAAG
64 AATA--TATATATATATAAAAG
18059999 AATATA
1 AATATA
18060005 TATAATATAA
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
82 5 0.07
83 60 0.81
84 7 0.09
85 2 0.03
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (83 bp):
AATATAATATTAAAAATACATACATAATATAGTTAAGATATATACATAAGATAACATGTAAAAAA
TATATATATATATAAAAG
Found at i:18060027 original size:22 final size:21
Alignment explanation
Indices: 18059909--18060034 Score: 60
Period size: 23 Copynumber: 5.5 Consensus size: 21
18059899 ATATATATAT
*
18059909 ATATAATAATATAATATTAAAG
1 ATAT-ATAATATAATATTAAAA
*
18059931 ATATATACATA-AATAGTATAATAT
1 ATATATA-ATATAATA-T-TAA-AA
*
18059955 ATATACGTAATATAGA-ATTTAAA
1 ATATA--TAATATA-ATATTAAAA
* *
18059978 ATATACCTAATATATTA-AAAGAA
1 ATATA--TAATATAATATTAA-AA
18060001 TATATATAATATAATATTAAGAA
1 -ATATATAATATAATATTAA-AA
18060024 ATATAATAATA
1 ATAT-ATAATA
18060035 ACAAAAAAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 25
0.71 0.08 0.22
Matches are distributed among these distances:
21 7 0.09
22 22 0.27
23 31 0.38
24 13 0.16
25 4 0.05
26 4 0.05
27 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (21 bp):
ATATATAATATAATATTAAAA
Found at i:18060563 original size:30 final size:30
Alignment explanation
Indices: 18060527--18060689 Score: 263
Period size: 30 Copynumber: 5.4 Consensus size: 30
18060517 TAGGTACAAG
*
18060527 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
****
18060557 TGGTGGTGGAAAAAAAATGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
18060587 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
* *
18060617 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
18060647 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
18060677 TGGTGGTGGAAAA
1 TGGTGGTGGAAAA
18060690 AGCTAAGATT
Statistics
Matches: 120, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 120 1.00
ACGTcount: A:0.24, C:0.03, G:0.48, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:18060691 original size:60 final size:60
Alignment explanation
Indices: 18060527--18060691 Score: 303
Period size: 60 Copynumber: 2.8 Consensus size: 60
18060517 TAGGTACAAG
* *
18060527 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAAAATGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAATGGCTAGTGGAGT
*
18060587 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAATGGCTAGTGGAGT
18060647 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAG
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAG
18060692 CTAAGATTTA
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 102 1.00
ACGTcount: A:0.24, C:0.03, G:0.48, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAATGGCTAGTGGAGT
Found at i:18064044 original size:19 final size:21
Alignment explanation
Indices: 18064003--18064047 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
18063993 AACATTAAGA
18064003 ATATATTATGAAATGTATAAAAT
1 ATATATTATGAAA--TATAAAAT
18064026 ATATATTATGAAA-AT-AAAT
1 ATATATTATGAAATATAAAAT
18064045 ATA
1 ATA
18064048 CATAATTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.32
20 2 0.09
23 13 0.59
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.38
Consensus pattern (21 bp):
ATATATTATGAAATATAAAAT
Found at i:18064065 original size:21 final size:21
Alignment explanation
Indices: 18064030--18064074 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
18064020 TAAAATATAT
*
18064030 ATTATGAAAATAAATATACATA
1 ATTATGAAAAAAAATA-ACATA
*
18064052 ATTA-GAAAAAAAATAACTTA
1 ATTATGAAAAAAAATAACATA
18064072 ATT
1 ATT
18064075 TTCTTGAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 10 0.48
22 4 0.19
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (21 bp):
ATTATGAAAAAAAATAACATA
Found at i:18067453 original size:22 final size:22
Alignment explanation
Indices: 18067428--18067475 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
18067418 ATATATATTT
*
18067428 CACATTGACCATTCGGCTTTAC
1 CACATTGACCATTCGGCCTTAC
* *
18067450 CACATTGGCCATTCGGCCTTAT
1 CACATTGACCATTCGGCCTTAC
18067472 CACA
1 CACA
18067476 CATATGCATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.29
Consensus pattern (22 bp):
CACATTGACCATTCGGCCTTAC
Found at i:18067504 original size:47 final size:47
Alignment explanation
Indices: 18067450--18067595 Score: 229
Period size: 47 Copynumber: 3.1 Consensus size: 47
18067440 TCGGCTTTAC
* *
18067450 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
*
18067497 CACATTGGCCATTCGGTCTTATCACATATATGCATGTTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
* * **
18067544 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
18067591 CACAT
1 CACAT
18067596 AAAATCCTAA
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 91 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCAT
Found at i:18075085 original size:21 final size:21
Alignment explanation
Indices: 18075061--18075100 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
18075051 GAAATGTTTT
*
18075061 TTTTTTGCCATGAAAACTAGA
1 TTTTTAGCCATGAAAACTAGA
* *
18075082 TTTTTAGCTATGGAAACTA
1 TTTTTAGCCATGAAAACTA
18075101 CTAATTGGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (21 bp):
TTTTTAGCCATGAAAACTAGA
Found at i:18081750 original size:23 final size:23
Alignment explanation
Indices: 18081683--18081756 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 23
18081673 CAGTATAGGT
* * * *
18081683 GAACCCCATAAGAATTGTTATAC
1 GAACCCTATAGGAATTGTAATGC
* *
18081706 GAA-CCTATAGGAAAT-AACATGC
1 GAACCCTATAGGAATTGTA-ATGC
18081728 GAACCCTATAGGAATTGTAATGC
1 GAACCCTATAGGAATTGTAATGC
*
18081751 AAACCC
1 GAACCC
18081757 CATTTTAGGC
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
22 15 0.38
23 23 0.59
24 1 0.03
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.22
Consensus pattern (23 bp):
GAACCCTATAGGAATTGTAATGC
Found at i:18082227 original size:27 final size:27
Alignment explanation
Indices: 18082195--18082246 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
18082185 AATCTCATAT
* *
18082195 GTGCGAACTCATCTATGTGAACCCTAA
1 GTGCGAACCCATCCATGTGAACCCTAA
18082222 GTGCGAACCCATCCATGTGAACCCT
1 GTGCGAACCCATCCATGTGAACCCT
18082247 TGGGTGTGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (27 bp):
GTGCGAACCCATCCATGTGAACCCTAA
Found at i:18082269 original size:15 final size:15
Alignment explanation
Indices: 18082237--18082278 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
18082227 AACCCATCCA
*
18082237 TGTGAACCCTTGGGTG
1 TGTGAACCC-TAGGTG
18082253 TGTGAACCCTAGGTG
1 TGTGAACCCTAGGTG
*
18082268 TGAGAACCCTA
1 TGTGAACCCTA
18082279 ATGTACGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 15 0.62
16 9 0.38
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.26
Consensus pattern (15 bp):
TGTGAACCCTAGGTG
Found at i:18082351 original size:14 final size:15
Alignment explanation
Indices: 18082312--18082354 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
18082302 CCCTAACGAG
*
18082312 CGAACCCTTATGTGTA
1 CGAA-CCTTATATGTA
18082328 CGAACC-TATATGTA
1 CGAACCTTATATGTA
18082342 C-AACCTTATATGT
1 CGAACCTTATATGT
18082355 GTGACCCTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 4 0.16
14 15 0.60
15 2 0.08
16 4 0.16
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (15 bp):
CGAACCTTATATGTA
Found at i:18082807 original size:46 final size:47
Alignment explanation
Indices: 18082719--18082816 Score: 144
Period size: 46 Copynumber: 2.1 Consensus size: 47
18082709 TATGGTAGTT
* * *
18082719 TAAAAATCCATCAAAACCGGGTAAACCAGAATGATAATTTATTGTAG
1 TAAAAAGCCATCAAAACCGAGTAAACCAGAATGATAAGTTATTGTAG
* *
18082766 TAAAAAGCCATCAAAATCGAG-CAACCAGAATGATAAGTTATTGTAG
1 TAAAAAGCCATCAAAACCGAGTAAACCAGAATGATAAGTTATTGTAG
18082812 TAAAA
1 TAAAA
18082817 GTCATTATCA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
46 28 0.61
47 18 0.39
ACGTcount: A:0.47, C:0.14, G:0.15, T:0.23
Consensus pattern (47 bp):
TAAAAAGCCATCAAAACCGAGTAAACCAGAATGATAAGTTATTGTAG
Found at i:18086474 original size:146 final size:147
Alignment explanation
Indices: 18086293--18086560 Score: 344
Period size: 147 Copynumber: 1.8 Consensus size: 147
18086283 ATTTTATAAC
* * * **
18086293 TTTTTAAGAATTTTTTATAAAGTTATGTTTCCAATAGGACATTGAGTATTTGGTTAGAAAATTGC
1 TTTTTAAGAATTTTTTACAAAGTTATGTTTCCAATAGGACATTGAGTATTTGGCTAGAAAAATAA
*** * *
18086358 G-TTTTCATTAGGGATTTGAGCAAATAGTTGATAGTTTTGATAGTTGTGAGATATTTTGGTATGT
66 GTTTTTCATTAAAAATTTGAGCAAATAGTTGATAGTTTTGATAATTGTGAGAAATTTTGGTATGT
18086422 ATTATATAAATAGAATT
131 ATTATATAAATAGAATT
* ** *
18086439 TTTTTAAAGAA-TTTTTACAAAGTTGA-GTTTTCAATAGGATTTTGAGTATTTTGCTAGAAAAAT
1 TTTTT-AAGAATTTTTTACAAAGTT-ATGTTTCCAATAGGACATTGAGTATTTGGCTAGAAAAAT
* * *
18086502 AAGTTTTTCATTAAAAATTTGAGTAAATAGTTTATAGTTTTGATAATTGTTAGAAATTT
64 AAGTTTTTCATTAAAAATTTGAGCAAATAGTTGATAGTTTTGATAATTGTGAGAAATTT
18086561 ATGAGAATAA
Statistics
Matches: 102, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
146 49 0.48
147 53 0.52
ACGTcount: A:0.34, C:0.04, G:0.18, T:0.45
Consensus pattern (147 bp):
TTTTTAAGAATTTTTTACAAAGTTATGTTTCCAATAGGACATTGAGTATTTGGCTAGAAAAATAA
GTTTTTCATTAAAAATTTGAGCAAATAGTTGATAGTTTTGATAATTGTGAGAAATTTTGGTATGT
ATTATATAAATAGAATT
Found at i:18086979 original size:17 final size:15
Alignment explanation
Indices: 18086957--18087000 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 15
18086947 AGTAAAGTCC
*
18086957 AACTTAAATCTAGATCA
1 AACTTAAATC-AGA-AA
18086974 AACTTAAATACAGAAA
1 AACTTAAAT-CAGAAA
18086990 AACTTAAATCA
1 AACTTAAATCA
18087001 AATTCAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 2 0.08
16 10 0.40
17 12 0.48
18 1 0.04
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.25
Consensus pattern (15 bp):
AACTTAAATCAGAAA
Found at i:18087032 original size:2 final size:2
Alignment explanation
Indices: 18087025--18087051 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18087015 TGGATAATCC
18087025 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
18087052 AACTCAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18092903 original size:22 final size:20
Alignment explanation
Indices: 18092878--18092921 Score: 70
Period size: 22 Copynumber: 2.1 Consensus size: 20
18092868 TGTTTAGGGT
18092878 TTTAGGGTTAATTAAATTAGAA
1 TTTAGGGTTAATT-AATTA-AA
18092900 TTTAGGGTTAATTAATTAAA
1 TTTAGGGTTAATTAATTAAA
18092920 TT
1 TT
18092922 AATTATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 4 0.18
21 5 0.23
22 13 0.59
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (20 bp):
TTTAGGGTTAATTAATTAAA
Found at i:18093127 original size:159 final size:159
Alignment explanation
Indices: 18092838--18093147 Score: 462
Period size: 159 Copynumber: 1.9 Consensus size: 159
18092828 GATTTAAGGT
* * * ** *
18092838 TTAAGGTTTTAAGAGTTTATAATTTTATTGTGTTTAGGGTTTTAGGGTTAATTAAATTAGAATTT
1 TTAAGGTTTAAAGACTTTAGAATTTTACCGTGTTTAGGGTTTTAGGATTAATTAAATTAGAATTT
*
18092903 AGGGTTAATTAATTAAATTAATTATTAATTTAAAAAATCAATTAAATTAGGGTTTAAAGTTTTTA
66 AGGGTTAATTAATTAAATTAACTATTAATTTAAAAAATCAATTAAATTAGGGTTTAAAGTTTTTA
18092968 GGATTAATTAATTAAAGTAGGGTTTAGGG
131 GGATTAATTAATTAAAGTAGGGTTTAGGG
* * *
18092997 TTAAGGTTTAAAGACTTTAGAGTTTTACCGTGTTTAGGGTTTTATGATTAATTAAATTA-AGGTT
1 TTAAGGTTTAAAGACTTTAGAATTTTACCGTGTTTAGGGTTTTAGGATTAATTAAATTAGA-ATT
* *
18093061 TAGGGTTAATTAATTAAATTAACTATTAATTTAAAAAATTAATTAAATTAGGGTTT-AGGATTTT
65 TAGGGTTAATTAATTAAATTAACTATTAATTTAAAAAATCAATTAAATTAGGGTTTAAAG-TTTT
* *
18093125 TAGGGTTAATTAATTAAATTAGG
129 TAGGATTAATTAATTAAAGTAGG
18093148 ATGCACTATC
Statistics
Matches: 135, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
158 3 0.02
159 132 0.98
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.44
Consensus pattern (159 bp):
TTAAGGTTTAAAGACTTTAGAATTTTACCGTGTTTAGGGTTTTAGGATTAATTAAATTAGAATTT
AGGGTTAATTAATTAAATTAACTATTAATTTAAAAAATCAATTAAATTAGGGTTTAAAGTTTTTA
GGATTAATTAATTAAAGTAGGGTTTAGGG
Found at i:18093376 original size:126 final size:126
Alignment explanation
Indices: 18093145--18093587 Score: 706
Period size: 126 Copynumber: 3.5 Consensus size: 126
18093135 TAATTAAATT
* * * *
18093145 AGGATGCACTATCAGCAAAATTACTGAAAAAAGCTTCCACGTGGACGCTCTTTTGATACAATAGT
1 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
*
18093210 ATCTGAAAAAATAATTTTGAGAAGACATTTTTGAACAAATAGTGTCCAAAACGCTTTAAGC
66 ATCTGAAAAAATAATTTTGAGAAGACATTTTTGAACAAATAGTGTCCAAAACGCTTCAAGC
* * * * *
18093271 ATGATGCACTGTCAACAAAATTACTGAAAAAAGCTTCCACGTGGACACTCTTTTGCTACAGTAGC
1 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
* * * * *
18093336 ATCTAAAAAAATAATTTTGAGAAGACGTTTATGAATAAATAGTGTCCAAAATGCTTCAAGC
66 ATCTGAAAAAATAATTTTGAGAAGACATTTTTGAACAAATAGTGTCCAAAACGCTTCAAGC
*
18093397 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTATAGTAGT
1 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
* *
18093462 ATCTGAAAAAATAATTTTGAGAAGACTTTTTTGAACAAATAGTGTCTAAAACGCTTCAAGC
66 ATCTGAAAAAATAATTTTGAGAAGACATTTTTGAACAAATAGTGTCCAAAACGCTTCAAGC
* *
18093523 AGGATACACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGTTCTTTTGCTACAGTAGT
1 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
18093588 TTCTATTTAG
Statistics
Matches: 289, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 289 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (126 bp):
AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGT
ATCTGAAAAAATAATTTTGAGAAGACATTTTTGAACAAATAGTGTCCAAAACGCTTCAAGC
Found at i:18095587 original size:50 final size:50
Alignment explanation
Indices: 18095484--18095731 Score: 275
Period size: 50 Copynumber: 4.8 Consensus size: 50
18095474 GATAATAACA
* * ** * *
18095484 TGCCAAAGCCATGT-CCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
18095534 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
18095584 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
18095634 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
18095689 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
18095732 TTACCCAAAT
Statistics
Matches: 169, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 104 0.62
51 20 0.12
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:18095657 original size:100 final size:104
Alignment explanation
Indices: 18095483--18095731 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
18095473 TGATAATAAC
**
18095483 ATGCCAAAGCCATGT-CCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
18095547 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
18095584 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
18095647 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
18095689 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
18095732 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 63 0.48
101 22 0.17
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:18095847 original size:13 final size:13
Alignment explanation
Indices: 18095826--18095857 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
18095816 GCTTGGATCA
*
18095826 TCATCAAATAAAT
1 TCATAAAATAAAT
18095839 TCATAAAATAAAT
1 TCATAAAATAAAT
18095852 TCATAA
1 TCATAA
18095858 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:18096104 original size:30 final size:30
Alignment explanation
Indices: 18096069--18096126 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
18096059 CCTCGACTCT
* *
18096069 AACTTTTTCAAAATTATAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
18096099 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
18096127 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.43
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:18103469 original size:9 final size:9
Alignment explanation
Indices: 18103446--18103475 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
18103436 ATTTATATTT
18103446 TATTAAAAA
1 TATTAAAAA
18103455 TA-TAAAAA
1 TATTAAAAA
18103463 TATTAAAAA
1 TATTAAAAA
18103472 TATT
1 TATT
18103476 GCCTTATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
TATTAAAAA
Found at i:18103682 original size:21 final size:21
Alignment explanation
Indices: 18103653--18103694 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
18103643 AGCTTCCAGT
*
18103653 GGGGGTTGTGGTTACTCTGGC
1 GGGGATTGTGGTTACTCTGGC
*
18103674 GGGGATTGTGGTTCCTCTGGC
1 GGGGATTGTGGTTACTCTGGC
18103695 AAGGAATCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.05, C:0.17, G:0.45, T:0.33
Consensus pattern (21 bp):
GGGGATTGTGGTTACTCTGGC
Found at i:18104061 original size:30 final size:30
Alignment explanation
Indices: 18104027--18104095 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
18104017 GTTGAAGTGT
*
18104027 TGGGCCCGCTGATTGTGTGGGCACTGTTGA
1 TGGGCCCGCTGATTGTGTAGGCACTGTTGA
* * *
18104057 TGGGCTCGGTGATTGTGTAGGCGCTGTTGA
1 TGGGCCCGCTGATTGTGTAGGCACTGTTGA
18104087 TGGGCCCGC
1 TGGGCCCGC
18104096 GTCGTCATCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.09, C:0.20, G:0.42, T:0.29
Consensus pattern (30 bp):
TGGGCCCGCTGATTGTGTAGGCACTGTTGA
Found at i:18106382 original size:11 final size:11
Alignment explanation
Indices: 18106366--18106426 Score: 56
Period size: 11 Copynumber: 5.5 Consensus size: 11
18106356 TTATATATAC
18106366 TAATAAAATAA
1 TAATAAAATAA
18106377 TAATAAAATAA
1 TAATAAAATAA
*
18106388 TAA-AATATCATA
1 TAATAAAAT-A-A
18106400 TAA-AAAATCAA
1 TAATAAAAT-AA
*
18106411 -ATTAAAATAA
1 TAATAAAATAA
18106421 TAATAA
1 TAATAA
18106427 CTAATAATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
10 7 0.17
11 25 0.60
12 10 0.24
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:18106440 original size:4 final size:4
Alignment explanation
Indices: 18106431--18106462 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
18106421 TAATAACTAA
18106431 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT
18106463 CTAAAATATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:18108467 original size:616 final size:615
Alignment explanation
Indices: 18107293--18108531 Score: 2244
Period size: 616 Copynumber: 2.0 Consensus size: 615
18107283 GTCGTATATA
*
18107293 TTCAAGAGAGGTGGGTATTCCAACATAACTCGCCAAATGGTTCTACCTAATTAAATAAATTTTTA
1 TTCAAGAGAGGTGGGTATTCCAACATAACTCGCCAAATGGTTCCACCTAATTAAATAAATTTTTA
18107358 GCATACAATTATATTATAAATCTACGTAATAATTGTAAAATCTAATATAAAATTTACCTAGTTAT
66 GCATACAATTATATTATAAATCTACGTAATAATTGTAAAATCTAATATAAAATTTACCTAGTTAT
* * *
18107423 CAGTGGGAATGTATATGGGTGGTTCACTGAGGATGTAAAAATGGAAAGTGAAATCGTGCCCATGA
131 CAGTGGGAATGTATATGGGTGGTTCACTGAGCACGTAAAAATGGAAAGTGAAATCATGCCCATGA
*
18107488 TTGCAGTAGTGATAGGCAACCTCAGATTTTGGCTTTATTCGGTCGCGTCGCCCCACACATCTCCC
196 TTGCAGTAGTGATAGGCAACCTCAGATTTTGGCTTTATTCGGACGCGTCGCCCCACACATCTCCC
* * * *
18107553 GGTACAATATTGCCAACATAGCATACTCAAACCTAAATTCATCAGCTGCTCTAAGATCAACGAGT
261 GGTAAAATATTGCCAACACAGCAGACTCAAACCTAAATTCATCAGCTGCTCTAAAATCAACGAGT
*
18107618 TTCAACAGCCACCTCAGATATACGAGGTTTCGTGACAAGTCCGCCATCAGATAACCTCTAATCAT
326 TTCAACAGCCACCTCAGATATACGAGGTTTCGTGACAAGTCCGCCATCAGATAACCTCAAATCAT
18107683 CTCAAGAATGTATGCCCGAGCATATCGTATTCTTTCTAGTTCAGTCAAATCATTATCCGGCTCTG
391 CTCAAGAATGTATGCCCGAGCATATCGTATTCTTTCTAGTTCAGTCAAATCATTATCCGGCTCTG
18107748 AGAATGTGTCTTGTAACCAGCCTATCTTGATCCGACCTCCATTAATATTATCCGGAATAGCACCC
456 AGAATGTGTCTTGTAACCAGCCTATCTTGATCCGACCTCCATTAATATTATCCGGAATAGCACCC
* * * **
18107813 AAAAGCTCGTAGCATACAGCTCCTCAATCAGTAGATTGAGCGGACCCGGTGACTGTGTACCCATC
521 AAAAGCTAGTAGCATACAGCTCCTCAATCAGCAGATTGAGCGGACCCCGTGACTACGTACCCATC
18107878 TATCGACAATCCCAATTGCAATTGCACGTC
586 TATCGACAATCCCAATTGCAATTGCACGTC
18107908 TTCAAGAGAGGTGGGTATTCCAACATAACTCGCCAAATGGTTCCACCTAATTAAATAAATTTTTA
1 TTCAAGAGAGGTGGGTATTCCAACATAACTCGCCAAATGGTTCCACCTAATTAAATAAATTTTTA
*
18107973 GCATACAATTATATTATAAATCTACGTAATAATTGTAAAATCTAATATAAAATTTACCTCGTTAT
66 GCATACAATTATATTATAAATCTACGTAATAATTGTAAAATCTAATATAAAATTTACCTAGTTAT
18108038 CAGTGGGAATGTATATGGGTGGTTCACTCGAGCACGTAAAAATGGAAAGTGAAATCATGCCCATG
131 CAGTGGGAATGTATATGGGTGGTTCACT-GAGCACGTAAAAATGGAAAGTGAAATCATGCCCATG
18108103 ATTGCAGTAGTGATAGGCAACCTCAGATTTTGGCTTTATTCGGACGCGTCGCCCCACACATCTCC
195 ATTGCAGTAGTGATAGGCAACCTCAGATTTTGGCTTTATTCGGACGCGTCGCCCCACACATCTCC
* *
18108168 CGGTAAAATGTTGCTAACACAGCAGACTCAAACCTAAATTCATCAGCTGCTCTAAAATCAACGAG
260 CGGTAAAATATTGCCAACACAGCAGACTCAAACCTAAATTCATCAGCTGCTCTAAAATCAACGAG
*
18108233 TTTCAGCAGCCACCTCAGATATACGAGGTTTCGTGACAAGTCCGCCATCAGATAACCTCAAATCA
325 TTTCAACAGCCACCTCAGATATACGAGGTTTCGTGACAAGTCCGCCATCAGATAACCTCAAATCA
* * *
18108298 TCTCAAGAATGTATGCTCGAGCATATCGTATTCTTTCTAGTTCAGTCGAATCATTATCCGGCTTT
390 TCTCAAGAATGTATGCCCGAGCATATCGTATTCTTTCTAGTTCAGTCAAATCATTATCCGGCTCT
*
18108363 GAGAATGTGTCTTGTAACCAGCCTATCTTGATCCGACCTCCGTTAATATTATCCGGAATAGCACC
455 GAGAATGTGTCTTGTAACCAGCCTATCTTGATCCGACCTCCATTAATATTATCCGGAATAGCACC
*
18108428 CAAAAGCTAGTAGCATACGGCTCCTCAATCAGCAGATTGAGCGGACCCCGTGACTACGTACCCAT
520 CAAAAGCTAGTAGCATACAGCTCCTCAATCAGCAGATTGAGCGGACCCCGTGACTACGTACCCAT
18108493 CTATCGACAATCCCAATTGCAATTGCACGTC
585 CTATCGACAATCCCAATTGCAATTGCACGTC
*
18108524 TTCTAGAG
1 TTCAAGAG
18108532 TGATAGTACA
Statistics
Matches: 598, Mismatches: 25, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
615 156 0.26
616 442 0.74
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (615 bp):
TTCAAGAGAGGTGGGTATTCCAACATAACTCGCCAAATGGTTCCACCTAATTAAATAAATTTTTA
GCATACAATTATATTATAAATCTACGTAATAATTGTAAAATCTAATATAAAATTTACCTAGTTAT
CAGTGGGAATGTATATGGGTGGTTCACTGAGCACGTAAAAATGGAAAGTGAAATCATGCCCATGA
TTGCAGTAGTGATAGGCAACCTCAGATTTTGGCTTTATTCGGACGCGTCGCCCCACACATCTCCC
GGTAAAATATTGCCAACACAGCAGACTCAAACCTAAATTCATCAGCTGCTCTAAAATCAACGAGT
TTCAACAGCCACCTCAGATATACGAGGTTTCGTGACAAGTCCGCCATCAGATAACCTCAAATCAT
CTCAAGAATGTATGCCCGAGCATATCGTATTCTTTCTAGTTCAGTCAAATCATTATCCGGCTCTG
AGAATGTGTCTTGTAACCAGCCTATCTTGATCCGACCTCCATTAATATTATCCGGAATAGCACCC
AAAAGCTAGTAGCATACAGCTCCTCAATCAGCAGATTGAGCGGACCCCGTGACTACGTACCCATC
TATCGACAATCCCAATTGCAATTGCACGTC
Found at i:18109876 original size:29 final size:29
Alignment explanation
Indices: 18109843--18109901 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
18109833 CTTCCCTTTC
18109843 ATCAACATGTATATTACTTAAATCCTAAA
1 ATCAACATGTATATTACTTAAATCCTAAA
18109872 ATCAACATGTATATTACTTAAATCCTAAA
1 ATCAACATGTATATTACTTAAATCCTAAA
18109901 A
1 A
18109902 CGGCACATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (29 bp):
ATCAACATGTATATTACTTAAATCCTAAA
Found at i:18110441 original size:31 final size:31
Alignment explanation
Indices: 18110391--18110451 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
18110381 TATACACATG
* *
18110391 AAACTTTGATTGTGGTTCAAAT-ATATATATA
1 AAACTTTAATTGTGATTC-AATCATATATATA
*
18110422 AAACTTTAATTTTGATTCAATCATATATAT
1 AAACTTTAATTGTGATTCAATCATATATAT
18110452 TTAAAGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 3 0.12
31 23 0.88
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.44
Consensus pattern (31 bp):
AAACTTTAATTGTGATTCAATCATATATATA
Found at i:18118593 original size:21 final size:23
Alignment explanation
Indices: 18118546--18118599 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
18118536 CATTCAAGAT
**
18118546 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
18118569 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
18118590 AAAAT-ATATA
1 AAAATAATATA
18118600 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:18118637 original size:25 final size:24
Alignment explanation
Indices: 18118609--18118670 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
18118599 AATGTGTAAA
*
18118609 AAAAAATTGAAATATATAATATAT
1 AAAAAATTGAAATAAATAATATAT
* *
18118633 GAAAATATT-AAAGTAAATAATGTAT
1 -AAAAAATTGAAA-TAAATAATATAT
*
18118658 AAAAATTTGAAAT
1 AAAAAATTGAAAT
18118671 GAGCGTTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
24 10 0.33
25 20 0.67
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (24 bp):
AAAAAATTGAAATAAATAATATAT
Found at i:18118839 original size:23 final size:23
Alignment explanation
Indices: 18118773--18118839 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
18118763 TATAAGAAAA
*
18118773 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
18118793 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
18118816 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
18118839 A
1 A
18118840 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 10 0.26
24 6 0.15
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:18118854 original size:44 final size:44
Alignment explanation
Indices: 18118800--18118886 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
18118790 ATTAGTATAT
18118800 AAATAGAAATA-A-AAATATAATAAATAGA-AATATAATAATAGTAG
1 AAATAGAAATAGATAAATA-AA-AAATAGATAA-ATAATAATAGTAG
* *
18118844 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTA
18118887 TTAGAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 28 0.74
45 5 0.13
46 5 0.13
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTAG
Found at i:18118871 original size:15 final size:14
Alignment explanation
Indices: 18118798--18118926 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 14
18118788 ATATTAGTAT
*
18118798 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
18118811 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
18118827 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
18118841 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
18118856 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
18118871 ATAAATAATAATAG
1 ATAAATAAAAATAG
*
18118885 TATTAGAATAACAA-A-
1 -A-TA-AATAAAAATAG
*
18118900 ATAAATATAAATAG
1 ATAAATAAAAATAG
18118914 A-AACATAAAAATA
1 ATAA-ATAAAAATA
18118927 ATAGCAATAA
Statistics
Matches: 92, Mismatches: 12, Indels: 23
0.72 0.09 0.18
Matches are distributed among these distances:
12 6 0.07
13 8 0.09
14 30 0.33
15 35 0.38
16 6 0.07
17 7 0.08
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:18118876 original size:29 final size:28
Alignment explanation
Indices: 18118819--18118926 Score: 73
Period size: 29 Copynumber: 3.8 Consensus size: 28
18118809 TAAAAATATA
* * *
18118819 ATAAATAGAAATATAATAATAGTAGAAAT
1 ATAAATAGAAACATAAAAATAG-ATAAAT
18118848 ATAAATAGATAA-ATAAAAATTAGATAAAT
1 ATAAATAGA-AACATAAAAA-TAGATAAAT
*
18118877 A-ATAATAGTATTAGA-ATAACAA-A-ATAAAT
1 ATA-AATAG-A--A-ACATAAAAATAGATAAAT
18118906 ATAAATAGAAACATAAAAATA
1 ATAAATAGAAACATAAAAATA
18118927 ATAGCAATAA
Statistics
Matches: 66, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
25 1 0.02
26 7 0.11
27 1 0.02
28 2 0.03
29 38 0.58
30 8 0.12
31 2 0.03
32 7 0.11
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (28 bp):
ATAAATAGAAACATAAAAATAGATAAAT
Found at i:18122233 original size:53 final size:52
Alignment explanation
Indices: 18122100--18122234 Score: 173
Period size: 52 Copynumber: 2.6 Consensus size: 52
18122090 CCATGGAAAC
* * *
18122100 ATGTGATATGTGCTTCCATATAAGACCATAGCAGGGCTATGACATGGGTGTG
1 ATGTGATATGTGCTTCCATATAAGACCATAACAGGGCTATGACATCGGTGAG
** * * *
18122152 ATGTGATATGTGC-TCTTGTATAAGACCATAATAGGGTTATGGCATCGGTGAG
1 ATGTGATATGTGCTTC-CATATAAGACCATAACAGGGCTATGACATCGGTGAG
18122204 ATGTGATTATGTGCTTCCATATAAGACCATA
1 ATGTGA-TATGTGCTTCCATATAAGACCATA
18122235 TCTGAGATAT
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
51 2 0.03
52 47 0.67
53 19 0.27
54 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (52 bp):
ATGTGATATGTGCTTCCATATAAGACCATAACAGGGCTATGACATCGGTGAG
Found at i:18122250 original size:53 final size:51
Alignment explanation
Indices: 18122100--18122297 Score: 158
Period size: 52 Copynumber: 3.9 Consensus size: 51
18122090 CCATGGAAAC
* * * *
18122100 ATGTGATATGTGCTTCCATATAAGACCATAGCAGGGCTATGACATGGGTGTG
1 ATGTGATATGTGCTTCCATATAAGACCATATCAGGGATATG-CATCGGTGAG
** *
18122152 ATGTGATATGTGC-TCTTGTATAAGACCATAAT-AGGGTTATGGCATCGGTGAG
1 ATGTGATATGTGCTTC-CATATAAGACCAT-ATCAGGGATAT-GCATCGGTGAG
* * *
18122204 ATGTGATTATGTGCTTCCATATAAGACCATATCTGAGATATAGCATCGAT-A-
1 ATGTGA-TATGTGCTTCCATATAAGACCATATCAGGGATAT-GCATCGGTGAG
** * *
18122255 A--T-ATATGTGCTTCTGTGTAAGACCATATCTGGGATATGGCATC
1 ATGTGATATGTGCTTCCATATAAGACCATATCAGGGATAT-GCATC
18122298 AATGTGATAT
Statistics
Matches: 122, Mismatches: 18, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
47 35 0.29
48 1 0.01
49 1 0.01
51 3 0.02
52 48 0.39
53 32 0.26
54 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (51 bp):
ATGTGATATGTGCTTCCATATAAGACCATATCAGGGATATGCATCGGTGAG
Found at i:18122308 original size:47 final size:47
Alignment explanation
Indices: 18122152--18122337 Score: 128
Period size: 47 Copynumber: 3.9 Consensus size: 47
18122142 CATGGGTGTG
* * *
18122152 ATGTGATATGTGC-TCTTGTATAAGACCATAAT-AGGGTTATGGCATCGGTGA
1 ATGTGATATGTGCTTC-CGTATAAGACCAT-ATCTGGGATATGGCATC----A
* * * *
18122203 GATGTGATTATGTGCTTCCATATAAGACCATATCTGAGATATAGCATCG
1 -ATGTGA-TATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATCA
* * *
18122252 ATAAT-ATATGTGCTTCTGTGTAAGACCATATCTGGGATATGGCATCA
1 AT-GTGATATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATCA
* * * **
18122299 ATGTGATATGTG-ATCCGTGTAAAACCATGGCTGGGATAT
1 ATGTGATATGTGCTTCCGTATAAGACCATATCTGGGATAT
18122338 TGCTTCGGTG
Statistics
Matches: 109, Mismatches: 20, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
46 23 0.21
47 44 0.40
48 3 0.03
49 1 0.01
52 8 0.07
53 28 0.26
54 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (47 bp):
ATGTGATATGTGCTTCCGTATAAGACCATATCTGGGATATGGCATCA
Found at i:18123159 original size:13 final size:13
Alignment explanation
Indices: 18123141--18123165 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18123131 GGGCTCTAAC
18123141 ATGGCCGTGTGAT
1 ATGGCCGTGTGAT
18123154 ATGGCCGTGTGA
1 ATGGCCGTGTGA
18123166 AGTCTGTACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.40, T:0.28
Consensus pattern (13 bp):
ATGGCCGTGTGAT
Found at i:18124703 original size:14 final size:14
Alignment explanation
Indices: 18124680--18124710 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
18124670 AACCTAAACT
*
18124680 AAAAATGAAAAGAA
1 AAAAAAGAAAAGAA
18124694 AAAAAAGAAAAGAA
1 AAAAAAGAAAAGAA
18124708 AAA
1 AAA
18124711 GAGAAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (14 bp):
AAAAAAGAAAAGAA
Done.