Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 61 of 352
Found at i:19210206 original size:22 final size:21
Alignment explanation
Indices: 19210181--19210222 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
19210171 AATTAAATAA
19210181 AAAATTACGTGCAACTATTATG
1 AAAATTACGTGCAAC-ATTATG
19210203 AAAATTACGTGCAACATTAT
1 AAAATTACGTGCAACATTAT
19210223 AACATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (21 bp):
AAAATTACGTGCAACATTATG
Found at i:19210425 original size:20 final size:19
Alignment explanation
Indices: 19210387--19210425 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
19210377 CCCATTTTCA
*
19210387 TAATCAACAAAAATCTAAT
1 TAATCAACAAAAATATAAT
*
19210406 TAATCAAACAAACATATAAT
1 TAATC-AACAAAAATATAAT
19210426 GTTCACTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (19 bp):
TAATCAACAAAAATATAAT
Found at i:19211769 original size:5 final size:6
Alignment explanation
Indices: 19211753--19211778 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
19211743 TAGAAAATTC
19211753 TAAAAA TAAAAA TAAAAA TAAAAA TA
1 TAAAAA TAAAAA TAAAAA TAAAAA TA
19211779 TATAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:19215625 original size:121 final size:120
Alignment explanation
Indices: 19215447--19215679 Score: 358
Period size: 121 Copynumber: 1.9 Consensus size: 120
19215437 ATTCGTTCTT
* * * * *
19215447 AGACTTTTTTGATTAACTTCATTTTCTCTATCCATATTAAATTTTGAAAACACCTCATCAATTTC
1 AGACTTTCTTAATGAACCTCATTTTCTCTATCCATATTAAAATTTGAAAACACCTCATCAATTTC
* * * *
19215512 AGTCTACAAAGAATTTGACTTAAAATTTGAGCTTTTCATCTTTTAAATTAGTTCCA
66 AGCCTACAAAGAATGTGAATTAAAATTTGAGCTTTCCATC-TTTAAATTAGTTCCA
*
19215568 AGACTTTCTTAATGAACCTCATTTTCTCTATCCATATTAAAATTTGAAAACACCTCATCAATTTG
1 AGACTTTCTTAATGAACCTCATTTTCTCTATCCATATTAAAATTTGAAAACACCTCATCAATTTC
*
19215633 AGCCTTCAAAGAATGTGAATTAAAATTTGAGCTTTCCATCTTTAAAT
66 AGCCTACAAAGAATGTGAATTAAAATTTGAGCTTTCCATCTTTAAAT
19215680 ATTGTGTATA
Statistics
Matches: 101, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
120 7 0.07
121 94 0.93
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.40
Consensus pattern (120 bp):
AGACTTTCTTAATGAACCTCATTTTCTCTATCCATATTAAAATTTGAAAACACCTCATCAATTTC
AGCCTACAAAGAATGTGAATTAAAATTTGAGCTTTCCATCTTTAAATTAGTTCCA
Found at i:19226915 original size:39 final size:39
Alignment explanation
Indices: 19226856--19227034 Score: 268
Period size: 39 Copynumber: 4.6 Consensus size: 39
19226846 ATCGTGATTT
* * * * *
19226856 GAAGCCAGAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
* *
19226895 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
*
19226934 GAAGCCTGAAGGCTAACTGAAGCACACAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
*
19226973 GAAGCCCGAAGGCTAACTGAAGCACACAAATGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
*
19227012 GAAGCCCGAAGGATAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
19227035 TCATCAGAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.40, C:0.23, G:0.25, T:0.12
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
Found at i:19230727 original size:26 final size:25
Alignment explanation
Indices: 19230673--19230727 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
19230663 TTAAAAGCAT
* *
19230673 AAAAAAAGGGATAATAGGCTGGTTA
1 AAAAAAAGGGATAATAGGCAGGATA
*
19230698 AAAAAAAGGGGTAATAAGG-AGGATA
1 AAAAAAAGGGATAAT-AGGCAGGATA
*
19230723 GAAAA
1 AAAAA
19230728 GTTGAAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 22 0.88
26 3 0.12
ACGTcount: A:0.55, C:0.02, G:0.29, T:0.15
Consensus pattern (25 bp):
AAAAAAAGGGATAATAGGCAGGATA
Found at i:19234970 original size:48 final size:49
Alignment explanation
Indices: 19234898--19234996 Score: 173
Period size: 48 Copynumber: 2.0 Consensus size: 49
19234888 ATATCAATCA
19234898 TTCTTAATCAAAATCTAAACATAAATTAAATTCCTTATATTCAAAATAT
1 TTCTTAATCAAAATCTAAACATAAATTAAATTCCTTATATTCAAAATAT
* *
19234947 TTCTTAA-CCAAATCTAAACATAAATTGAATTCCTTATATTCAAAATAT
1 TTCTTAATCAAAATCTAAACATAAATTAAATTCCTTATATTCAAAATAT
19234995 TT
1 TT
19234997 TTTTTAAATT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 41 0.85
49 7 0.15
ACGTcount: A:0.44, C:0.15, G:0.01, T:0.39
Consensus pattern (49 bp):
TTCTTAATCAAAATCTAAACATAAATTAAATTCCTTATATTCAAAATAT
Found at i:19235173 original size:28 final size:28
Alignment explanation
Indices: 19235133--19235194 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
19235123 ATTGGACGTC
* *
19235133 GAGCATGGATGAACCGAAGAGAGAAA-G
1 GAGCATAGATGAACCAAAGAGAGAAATG
19235160 AGAGCATAGATGAACCAAAGAGAGAAATG
1 -GAGCATAGATGAACCAAAGAGAGAAATG
19235189 GAGCAT
1 GAGCAT
19235195 GGAACCAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 30 0.97
29 1 0.03
ACGTcount: A:0.47, C:0.11, G:0.32, T:0.10
Consensus pattern (28 bp):
GAGCATAGATGAACCAAAGAGAGAAATG
Found at i:19236182 original size:9 final size:9
Alignment explanation
Indices: 19236170--19236207 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
19236160 GAATTATTCG
*
19236170 AATCGAGTT
1 AATCGAATT
19236179 AATCGAATT
1 AATCGAATT
*
19236188 AATCGAGTT
1 AATCGAATT
19236197 AATCGAATT
1 AATCGAATT
19236206 AA
1 AA
19236208 CTCAAATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (9 bp):
AATCGAATT
Found at i:19236184 original size:23 final size:21
Alignment explanation
Indices: 19236158--19236206 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 21
19236148 ATTTCGAATT
19236158 TCGAATTATTCGAATCGAGTTAA
1 TCGAATTATT--AATCGAGTTAA
19236181 TCG-A--ATTAATCGAGTTAA
1 TCGAATTATTAATCGAGTTAA
19236199 TCGAATTA
1 TCGAATTA
19236207 ACTCAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
18 14 0.61
19 1 0.04
20 3 0.13
21 1 0.04
22 1 0.04
23 3 0.13
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (21 bp):
TCGAATTATTAATCGAGTTAA
Found at i:19236193 original size:18 final size:18
Alignment explanation
Indices: 19236170--19236207 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
19236160 GAATTATTCG
19236170 AATCGAGTTAATCGAATT
1 AATCGAGTTAATCGAATT
19236188 AATCGAGTTAATCGAATT
1 AATCGAGTTAATCGAATT
19236206 AA
1 AA
19236208 CTCAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (18 bp):
AATCGAGTTAATCGAATT
Found at i:19241023 original size:35 final size:31
Alignment explanation
Indices: 19240984--19241053 Score: 86
Period size: 35 Copynumber: 2.1 Consensus size: 31
19240974 ATATACATAT
* *
19240984 AATAAAATACATGTATTGATAATATATATGATAAG
1 AATAAAATAAATGTA---ATAATATACAT-ATAAG
19241019 AATAAAATAAATGTAATAATATACATATAAG
1 AATAAAATAAATGTAATAATATACATATAAG
19241050 AATA
1 AATA
19241054 TAAAATCTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 9 0.27
32 10 0.30
35 14 0.42
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (31 bp):
AATAAAATAAATGTAATAATATACATATAAG
Found at i:19243841 original size:72 final size:73
Alignment explanation
Indices: 19243630--19243848 Score: 217
Period size: 72 Copynumber: 3.0 Consensus size: 73
19243620 AAAAACAGAC
* * * * *
19243630 ATTAAAA-ACAAAAACTAAAAATATCTCAGCATGTGAACTGAGGCTCAACTCACTTTTCGCAATA
1 ATTAAAACACAAAAATTAAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
19243694 TGAGTTGATT
64 TGAGTTGATA
* *** * * * * * *
19243704 TTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACCATAT
1 ATTAAAAC-ACAAAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
19243769 GAGTTGA-A
65 GAGTTGATA
* * *
19243777 ATTAAAACACAAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTGGCAATATG
1 ATTAAAACACAAAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
*
19243842 AGCTGAT
66 AGTTGAT
19243849 TTTGAAAAAG
Statistics
Matches: 113, Mismatches: 29, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
72 54 0.48
73 4 0.04
74 37 0.33
76 18 0.16
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (73 bp):
ATTAAAACACAAAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATA
Found at i:19243920 original size:54 final size:55
Alignment explanation
Indices: 19243821--19243925 Score: 133
Period size: 54 Copynumber: 1.9 Consensus size: 55
19243811 CCCCGAGGCT
* * *
19243821 CAACTCACCTCTGGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGTG
1 CAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGTG
* * *
19243875 CAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 CAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
19243926 CAGAAATTGA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
54 32 0.74
55 11 0.26
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (55 bp):
CAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGTG
Found at i:19243932 original size:13 final size:13
Alignment explanation
Indices: 19243905--19243938 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
19243895 GAGTTGATTC
*
19243905 TTGAACAACATAAA
1 TTGAA-AACAGAAA
19243919 TTGAAAACAGAAA
1 TTGAAAACAGAAA
19243932 TTGAAAA
1 TTGAAAA
19243939 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:19244012 original size:14 final size:14
Alignment explanation
Indices: 19243993--19244027 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
19243983 GCTGATTTTT
* *
19243993 TTGAAAAGTAGGAA
1 TTGAAAAGCAGAAA
19244007 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
19244021 TTGAAAA
1 TTGAAAA
19244028 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:19244118 original size:14 final size:14
Alignment explanation
Indices: 19244099--19244125 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
19244089 AAAAATTAAA
19244099 AACAGAATTTGAAT
1 AACAGAATTTGAAT
19244113 AACAGAATTTGAA
1 AACAGAATTTGAA
19244126 AATACCTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.15, T:0.26
Consensus pattern (14 bp):
AACAGAATTTGAAT
Found at i:19244202 original size:102 final size:99
Alignment explanation
Indices: 19244005--19244215 Score: 230
Period size: 102 Copynumber: 2.1 Consensus size: 99
19243995 GAAAAGTAGG
* **
19244005 AATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTTGACTCACCTCTCGCAATAT
1 AATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
* *
19244070 GAGTTGGTTTTAGGAAAGTAAAAATTAAAAACAGA
66 GAGTTGATTTTACGAAAG-AAAAATTAAAAACAGA
* * * *
19244105 ATTTGAATAA-CAGAATTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCATCTCTTGCA
1 AATTGAA-AAGCAGAAATTGAAAATACCTCAG-C--GTGACCCGAGGCTCAACTCACCTCTCGCA
* * *
19244168 ATATGAGTTGATTTTGACGAACG-GAATTTGAAAAACAGA
62 ATATGAGTTGATTTT-ACGAAAGAAAAATT-AAAAACAGA
19244207 AATTGAAAA
1 AATTGAAAA
19244216 TAGCTCAGCA
Statistics
Matches: 92, Mismatches: 13, Indels: 11
0.79 0.11 0.09
Matches are distributed among these distances:
99 1 0.01
100 25 0.27
101 8 0.09
102 53 0.58
103 5 0.05
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (99 bp):
AATTGAAAAGCAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTACGAAAGAAAAATTAAAAACAGA
Found at i:19244257 original size:88 final size:88
Alignment explanation
Indices: 19244103--19244270 Score: 257
Period size: 88 Copynumber: 1.9 Consensus size: 88
19244093 ATTAAAAACA
* * * * *
19244103 GAATTTGAATAACAGAATTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCATCTCTTGCA
1 GAATTTGAAAAACAGAAATTGAAAATACCTCGACACGTGACCCAAGGCTCAACTCATCTCTCGCA
19244168 ATATGAGTTGATTTTGACGAACG
66 ATATGAGTTGATTTTGACGAACG
* *
19244191 GAATTTGAAAAACAGAAATTGAAAATAGCTC-AGCACGTGAGCCAAGGCTCAACTCATCTCTCGC
1 GAATTTGAAAAACAGAAATTGAAAATACCTCGA-CACGTGACCCAAGGCTCAACTCATCTCTCGC
19244255 AATATGAGTTGATTTT
65 AATATGAGTTGATTTT
19244271 TGAAAAACAG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
87 1 0.01
88 71 0.99
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (88 bp):
GAATTTGAAAAACAGAAATTGAAAATACCTCGACACGTGACCCAAGGCTCAACTCATCTCTCGCA
ATATGAGTTGATTTTGACGAACG
Found at i:19244517 original size:74 final size:70
Alignment explanation
Indices: 19244289--19244607 Score: 302
Period size: 70 Copynumber: 4.4 Consensus size: 70
19244279 AGAAATTAAA
* * * *
19244289 AGGCTGAACTCACCTTTCGCAAGATGAGTCAATTTTCT-AAACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGT-AATTTT-TGAAACATAAATTAAAAATACCTCAGCG
*
19244353 TGCCCCT-
64 TG-ACCTG
** * * * * * *
19244360 AGGCTTGACTCACCTCTCACAATATGAGTTGA-TTTTGGAACATAAATTGAAATTACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAG-TAATTTTTGAAACATAAATTAAAAATACCTCAGCGT
* *
19244424 GTCTTG
65 GACCTG
* *
19244430 AGGCTCAACTCACCTCTCGCAATATGCGCTAATTTTTGAAACAACAGGAATTAAAAATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAG-TAATTTTTGAAAC-ATA--AATTAAAAATACCTCAG
19244495 CGTGACCTG
62 CGTGACCTG
** *
19244504 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGT-AA--TTTTTGAAACATAAATTAAAAATACCTCAGC
19244569 ATGTGACCTG
63 --GTGACCTG
* *
19244579 AGGCTCAACTCATCTCTTGCAATATGAGT
1 AGGCTCAACTCACCTCTCGCAATATGAGT
19244608 TGATTTTGAC
Statistics
Matches: 201, Mismatches: 35, Indels: 20
0.79 0.14 0.08
Matches are distributed among these distances:
69 3 0.01
70 52 0.26
71 32 0.16
72 3 0.01
73 18 0.09
74 48 0.24
75 35 0.17
76 10 0.05
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTAATTTTTGAAACATAAATTAAAAATACCTCAGCGTG
ACCTG
Found at i:19244633 original size:432 final size:431
Alignment explanation
Indices: 19244124--19245045 Score: 1720
Period size: 432 Copynumber: 2.1 Consensus size: 431
19244114 ACAGAATTTG
*
19244124 AAAATACCTC-GACATGTGACCCGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTTTGACGA
1 AAAATACCTCAG-CATGTGACCTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTTTGACGA
19244188 ACGGAATTTGAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCATCTCTC
65 ACGGAATTTGAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCATCTCTC
19244253 GCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTGAACTCACCTTTCGCAAGATGAGT
130 GCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTGAACTCACCTTTCGCAAGATGAGT
*
19244318 CAATTTTCTAAACATAAACTAAAAATACCTCAGCGTGCCCCTAGGCTTGACTCACCTCTCACAAT
195 CAATTTTCTAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTTGACTCACCTCTCACAAT
19244383 ATGAGTTGATTTTGGAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
260 ATGAGTTGATTTTGGAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* *
19244448 GCAATATGCGCTAATTTTTGAAACAACAGGAATTAAAAATACCTCAGCGTGACCTGAGGCTTGAC
325 GAAATATGAGCTAATTTTTGAAACAACAGGAATTAAAAATACCTCAGCGTGACCTGAGGCTTGAC
19244513 TCACCTCTCGCAATATGAGTCAATTTTTTTGAAACATAAACTA
390 TCACCTCTCGCAATATGAGTCAA-TTTTTTGAAACATAAACTA
19244556 AAAATACCTCAGCATGTGACCTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTTTGACGAA
1 AAAATACCTCAGCATGTGACCTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTTTGACGAA
*
19244621 CGGAATTTGAAAAATAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCATCTCTCG
66 CGGAATTTGAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCATCTCTCG
19244686 CAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTGAACTCACCTTTCGCAAGATGAGTC
131 CAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTGAACTCACCTTTCGCAAGATGAGTC
*
19244751 AATTTTCTAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTTGACTCACCTCTCGCAATA
196 AATTTTCTAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTTGACTCACCTCTCACAATA
19244816 TGAGTTGATTTTGGAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
261 TGAGTTGATTTTGGAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
*
19244881 AAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAATACCTCAGCGTGACCTGAGGCTTGACT
326 AAATATGAGCTAATTTTTGAAACAACAGGAATTAAAAATACCTCAGCGTGACCTGAGGCTTGACT
*
19244946 CACCTCTCGCAATATGAGTCAATTTTTTGAAACATAAATTA
391 CACCTCTCGCAATATGAGTCAATTTTTTGAAACATAAACTA
* * *
19244987 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 AAAATACCTCAGCATGTGACCTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTTT
19245046 TGAAAACATG
Statistics
Matches: 478, Mismatches: 11, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
431 74 0.15
432 403 0.84
433 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (431 bp):
AAAATACCTCAGCATGTGACCTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTTTGACGAA
CGGAATTTGAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCATCTCTCG
CAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTGAACTCACCTTTCGCAAGATGAGTC
AATTTTCTAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTTGACTCACCTCTCACAATA
TGAGTTGATTTTGGAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
AAATATGAGCTAATTTTTGAAACAACAGGAATTAAAAATACCTCAGCGTGACCTGAGGCTTGACT
CACCTCTCGCAATATGAGTCAATTTTTTGAAACATAAACTA
Found at i:19244634 original size:75 final size:73
Alignment explanation
Indices: 19244289--19244636 Score: 255
Period size: 74 Copynumber: 4.8 Consensus size: 73
19244279 AGAAATTAAA
* * * * * * *
19244289 AGGCTGAACTCACCTTTCGCAAGATGAGTCAATTTT--CTAAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGAC-GAACAGAAATTAAAAATACCTCAGC
*
19244352 -GTGCCCCT-
65 AGTG-ACCTG
** * * * * * *
19244360 AGGCTTGACTCACCTCTCACAATATGAGTTGATTTTG--GAACATAAATTGAAATTACCTCAAC-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGACGAACAGAAATTAAAAATACCTCAGCA
* *
19244422 GTGTCTTG
66 GTGACCTG
* * *
19244430 AGGCTCAACTCACCTCTCGCAATATGCGCTAATTTTTGAAAC-AACAGGAATTAAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTAA-TTTTG--ACGAACAGAAATTAAAAATACCTCA
19244494 GC-GTGACCTG
63 GCAGTGACCTG
** * *** * *
19244504 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGACG-AACAGAAATTAAAAATACCTCAGC
19244569 ATGTGACCTG
65 A-GTGACCTG
* * * * *
19244579 AGGCTCAACTCATCTCTTGCAATATGAGTTGATTTTGACGAACGGAATTTGAAAAATA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGACGAACAGAAATT-AAAAATA
19244637 GAAATTGAAA
Statistics
Matches: 214, Mismatches: 51, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
69 2 0.01
70 49 0.23
71 34 0.16
73 25 0.12
74 58 0.27
75 46 0.21
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28
Consensus pattern (73 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTGACGAACAGAAATTAAAAATACCTCAGCA
GTGACCTG
Found at i:19244873 original size:70 final size:70
Alignment explanation
Indices: 19244721--19245072 Score: 353
Period size: 74 Copynumber: 4.9 Consensus size: 70
19244711 AGAAATTAAA
* * * ** * *
19244721 AGGCTGAACTCACCTTTCGCAAGATGAGTCAATTTTCTAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-GAAACATAAATTAAAAATACCTCAGCGT
* *
19244786 GCCCCG
65 GTCCTG
** * * * *
19244792 AGGCTTGACTCACCTCTCGCAATATGAGTTGATTTTGGAACATAAATTGAAATTACCTCAACGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTAAAAATACCTCAGCGTG
*
19244857 TCTTG
66 TCCTG
* * *
19244862 AGGCTCAACTCACCTCTCGAAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAC-ATA--AATTAAAAATACCTCAG
*
19244927 CGTGACCTG
62 CGTGTCCTG
** **
19244936 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTTGAAACATAAATTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGAAACATAAATTAAAAATACCTCAGCG
19245001 TGTGACCTG
64 TGT--CCTG
** * *
19245010 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACATGAATTAAAGATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTG-AAACATAAATTAAAAATACCTCAG
19245073 AGTACCCAAA
Statistics
Matches: 231, Mismatches: 42, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
70 53 0.23
71 38 0.16
72 23 0.10
73 6 0.03
74 101 0.44
75 10 0.04
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTAAAAATACCTCAGCGTG
TCCTG
Found at i:19245271 original size:86 final size:85
Alignment explanation
Indices: 19245164--19245330 Score: 253
Period size: 86 Copynumber: 2.0 Consensus size: 85
19245154 ATTGGATTAA
* *
19245164 CTGTATATGCCATGCATGATGTTATCATGATATGCACATGTTTGTCTTAAATACCTTTATGCCTA
1 CTGTATATGCCATGCATGATGTTATCATGATATGCACATGTTTGTCGTAAATACCTTGATGCCTA
19245229 CATGATTATGCTAGTGGACTC
66 CATGATTATGC-AGTGGACTC
* * * * *
19245250 CTGTATATGCCATGCATGATGTTGTCATGATATGCTCATGTTTTTCGTACATGCCTTGATGCCTA
1 CTGTATATGCCATGCATGATGTTATCATGATATGCACATGTTTGTCGTAAATACCTTGATGCCTA
*
19245315 CATGATTGTGCAGTGG
66 CATGATTATGCAGTGG
19245331 TCCTTAAGCA
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
85 5 0.07
86 68 0.93
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (85 bp):
CTGTATATGCCATGCATGATGTTATCATGATATGCACATGTTTGTCGTAAATACCTTGATGCCTA
CATGATTATGCAGTGGACTC
Found at i:19257292 original size:35 final size:31
Alignment explanation
Indices: 19257253--19257322 Score: 86
Period size: 35 Copynumber: 2.1 Consensus size: 31
19257243 ATATACATAT
* *
19257253 AATAAAATACATGTATTGATAATATATATGATAAG
1 AATAAAATAAATGTA---ATAATATACAT-ATAAG
19257288 AATAAAATAAATGTAATAATATACATATAAG
1 AATAAAATAAATGTAATAATATACATATAAG
19257319 AATA
1 AATA
19257323 TAAAATCTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 9 0.27
32 10 0.30
35 14 0.42
ACGTcount: A:0.57, C:0.03, G:0.09, T:0.31
Consensus pattern (31 bp):
AATAAAATAAATGTAATAATATACATATAAG
Found at i:19257568 original size:23 final size:23
Alignment explanation
Indices: 19257542--19257587 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
19257532 AATAACGACA
19257542 TAGAATGAACTTACTAGTACATT
1 TAGAATGAACTTACTAGTACATT
19257565 TAGAATGAACTTACTAGTACATT
1 TAGAATGAACTTACTAGTACATT
19257588 ACATGGATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (23 bp):
TAGAATGAACTTACTAGTACATT
Found at i:19257679 original size:16 final size:15
Alignment explanation
Indices: 19257658--19257702 Score: 63
Period size: 16 Copynumber: 2.9 Consensus size: 15
19257648 TGGTGTTCAA
19257658 AATATATACATAACAT
1 AATATATACATAA-AT
*
19257674 AATATATATATAAAT
1 AATATATACATAAAT
19257689 ATATATATACATAA
1 A-ATATATACATAA
19257703 TGTAGTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 3 0.12
16 23 0.88
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.36
Consensus pattern (15 bp):
AATATATACATAAAT
Found at i:19259140 original size:16 final size:16
Alignment explanation
Indices: 19259119--19259150 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
19259109 TTTTGTGTAA
*
19259119 TGGGCTGTTAGTTTAG
1 TGGGCTGGTAGTTTAG
19259135 TGGGCTGGTAGTTTAG
1 TGGGCTGGTAGTTTAG
19259151 GTTATTGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.06, G:0.41, T:0.41
Consensus pattern (16 bp):
TGGGCTGGTAGTTTAG
Found at i:19260637 original size:8 final size:8
Alignment explanation
Indices: 19260624--19260657 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
19260614 TTTCATTTCG
19260624 TTTTTTTA
1 TTTTTTTA
19260632 TTTTTTTA
1 TTTTTTTA
19260640 TCTTTTTTA
1 T-TTTTTTA
*
19260649 TTTTATTA
1 TTTTTTTA
19260657 T
1 T
19260658 GAATCTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTTA
Found at i:19260647 original size:17 final size:17
Alignment explanation
Indices: 19260625--19260657 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
19260615 TTCATTTCGT
*
19260625 TTTTTTATTTTTTTATC
1 TTTTTTATTTTATTATC
19260642 TTTTTTATTTTATTAT
1 TTTTTTATTTTATTAT
19260658 GAATCTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTATTTTATTATC
Found at i:19261546 original size:10 final size:10
Alignment explanation
Indices: 19261531--19261556 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
19261521 ACCTATTATA
19261531 TATATATATG
1 TATATATATG
19261541 TATATATATG
1 TATATATATG
19261551 TATATA
1 TATATA
19261557 CATAGTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (10 bp):
TATATATATG
Found at i:19261637 original size:25 final size:24
Alignment explanation
Indices: 19261609--19261678 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
19261599 AACTGATTTG
19261609 TTATATATATTTATTTCAAATTATT
1 TTATAT-TATTTATTTCAAATTATT
* * *
19261634 TTATATTGTTTATTCTTAAGTTATT
1 TTATATTATTTATT-TCAAATTATT
* *
19261659 GTATATTATGTATTTCAAAT
1 TTATATTATTTATTTCAAAT
19261679 AACCCTTTTT
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
24 11 0.31
25 25 0.69
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (24 bp):
TTATATTATTTATTTCAAATTATT
Found at i:19261800 original size:20 final size:20
Alignment explanation
Indices: 19261756--19261801 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
19261746 CTTTTACATA
*
19261756 TTATA-TATTTTAAATTTGT
1 TTATATTATTTTAAATTTGC
19261775 TATATATTATTTTAAA-TTGAC
1 T-TATATTATTTTAAATTTG-C
19261796 TTATAT
1 TTATAT
19261802 ATACCTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 1 0.04
20 12 0.52
21 10 0.43
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (20 bp):
TTATATTATTTTAAATTTGC
Found at i:19261833 original size:25 final size:24
Alignment explanation
Indices: 19261761--19261841 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
19261751 ACATATTATA
*
19261761 TATTTTAAATT-TGTTATATA--T
1 TATTTTAAATTATTTTATATACCT
*
19261782 TATTTTAAATTGACTTATATATACCT
1 TATTTTAAATT-A-TTTTATATACCT
19261808 TATTTTAAAATTATTTTATATACCT
1 TATTTT-AAATTATTTTATATACCT
19261833 TATTTTAAA
1 TATTTTAAA
19261842 CCCCATTTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
21 11 0.22
24 10 0.20
25 17 0.33
26 8 0.16
27 5 0.10
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.56
Consensus pattern (24 bp):
TATTTTAAATTATTTTATATACCT
Found at i:19261837 original size:14 final size:14
Alignment explanation
Indices: 19261799--19261839 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
19261789 AATTGACTTA
19261799 TATATACCTTATTT
1 TATATACCTTATTT
*
19261813 TA-A-A-ATTATTT
1 TATATACCTTATTT
19261824 TATATACCTTATTT
1 TATATACCTTATTT
19261838 TA
1 TA
19261840 AACCCCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
11 8 0.36
12 2 0.09
13 2 0.09
14 10 0.45
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.56
Consensus pattern (14 bp):
TATATACCTTATTT
Found at i:19274799 original size:15 final size:17
Alignment explanation
Indices: 19274779--19274814 Score: 58
Period size: 15 Copynumber: 2.2 Consensus size: 17
19274769 CAATTTCTTC
19274779 TTCCTTTTTT-TT-TTT
1 TTCCTTTTTTGTTGTTT
19274794 TTCCTTTTTTGTTGTTT
1 TTCCTTTTTTGTTGTTT
19274811 TTCC
1 TTCC
19274815 GTTAGATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.53
16 2 0.11
17 7 0.37
ACGTcount: A:0.00, C:0.17, G:0.06, T:0.78
Consensus pattern (17 bp):
TTCCTTTTTTGTTGTTT
Found at i:19277726 original size:24 final size:24
Alignment explanation
Indices: 19277695--19277747 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
19277685 GTTGATCTTG
19277695 ATTA-ATTTAGACTTCTTCGATTA
1 ATTACATTTAGACTTCTTCGATTA
19277718 ATTACATTTAGACTTCTTCGATTA
1 ATTACATTTAGACTTCTTCGATTA
19277742 ATTACA
1 ATTACA
19277748 AGAAGAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 4 0.14
24 25 0.86
ACGTcount: A:0.32, C:0.15, G:0.08, T:0.45
Consensus pattern (24 bp):
ATTACATTTAGACTTCTTCGATTA
Found at i:19283473 original size:12 final size:12
Alignment explanation
Indices: 19283456--19283480 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
19283446 TGCTTACCCC
19283456 TAAATCATGTGT
1 TAAATCATGTGT
19283468 TAAATCATGTGT
1 TAAATCATGTGT
19283480 T
1 T
19283481 TGCAGGGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TAAATCATGTGT
Found at i:19289727 original size:48 final size:48
Alignment explanation
Indices: 19289573--19289720 Score: 242
Period size: 48 Copynumber: 3.1 Consensus size: 48
19289563 ATATATACAC
* **
19289573 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
**
19289621 GGCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
19289669 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
19289717 ATCT
1 ATCT
19289721 TGTACATCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:19290963 original size:23 final size:23
Alignment explanation
Indices: 19290931--19290974 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
19290921 AAAATTTCAC
* *
19290931 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
19290954 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
19290975 TATTTTTGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:19291593 original size:28 final size:28
Alignment explanation
Indices: 19291553--19291620 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
19291543 AAACAAAATC
* * *
19291553 CGCACACACAGTGC-CCACTGACCGATCT
1 CGCACACATAGTGCTCCACTGA-AGAACT
* *
19291581 CGCACACATAGTGCTCGATTGAAGAACT
1 CGCACACATAGTGCTCCACTGAAGAACT
19291609 CGCACACATAGT
1 CGCACACATAGT
19291621 TCCTCATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 29 0.85
29 5 0.15
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.18
Consensus pattern (28 bp):
CGCACACATAGTGCTCCACTGAAGAACT
Found at i:19291952 original size:40 final size:40
Alignment explanation
Indices: 19291879--19291997 Score: 177
Period size: 40 Copynumber: 3.0 Consensus size: 40
19291869 GGATTTTGTC
* *
19291879 CCAGCACGAATGC-CTTCGGGGCTTAGCCCGGATACATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACA
* * *
19291918 CCAGCACGAATGCTCTTTGAGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACA
*
19291958 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACA
19291998 TACTGAACTT
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 13 0.18
40 59 0.82
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACA
Found at i:19294099 original size:48 final size:48
Alignment explanation
Indices: 19293945--19294092 Score: 242
Period size: 48 Copynumber: 3.1 Consensus size: 48
19293935 ATATATACAC
* **
19293945 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
**
19293993 GGCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
19294041 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
19294089 ATCT
1 ATCT
19294093 TGTACATCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:19295331 original size:23 final size:23
Alignment explanation
Indices: 19295304--19295347 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
19295294 AAAATTTCAC
* *
19295304 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
19295327 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
19295348 TATTTTTGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:19295802 original size:15 final size:15
Alignment explanation
Indices: 19295782--19295823 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
19295772 CCATTTCATG
19295782 CATTTCATAAATAAC
1 CATTTCATAAATAAC
* *
19295797 CATTTCATAAATCAT
1 CATTTCATAAATAAC
*
19295812 TATTTCATAAAT
1 CATTTCATAAAT
19295824 TTCATTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (15 bp):
CATTTCATAAATAAC
Found at i:19296126 original size:13 final size:13
Alignment explanation
Indices: 19296094--19296126 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
19296084 TTCGAGACCT
19296094 TAATTTCAATTCA
1 TAATTTCAATTCA
19296107 T-ATTTCAATTCA
1 TAATTTCAATTCA
19296119 TAATTTCA
1 TAATTTCA
19296127 CTTTTTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTTCAATTCA
Found at i:19297730 original size:20 final size:21
Alignment explanation
Indices: 19297694--19297732 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
19297684 TTCGAATGGC
19297694 TTCTATTGTTCTTTCTTTTTT
1 TTCTATTGTTCTTTCTTTTTT
*
19297715 TTCTTTTGTT-TTTCTTTT
1 TTCTATTGTTCTTTCTTTT
19297733 ATACCATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.03, C:0.13, G:0.05, T:0.79
Consensus pattern (21 bp):
TTCTATTGTTCTTTCTTTTTT
Found at i:19300200 original size:21 final size:22
Alignment explanation
Indices: 19300176--19300227 Score: 90
Period size: 21 Copynumber: 2.5 Consensus size: 22
19300166 AAAGACATTT
19300176 GGTCCCTAAATCGAGCCTTT-A
1 GGTCCCTAAATCGAGCCTTTAA
19300197 GGTCCCTAAATCGAGCCTTTAA
1 GGTCCCTAAATCGAGCCTTTAA
19300219 GG-CCCTAAA
1 GGTCCCTAAA
19300228 AATAAATTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (22 bp):
GGTCCCTAAATCGAGCCTTTAA
Found at i:19301832 original size:16 final size:16
Alignment explanation
Indices: 19301811--19301862 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
19301801 TTTGGTTCGC
19301811 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
19301827 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
19301843 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
19301859 TGTA
1 TGTA
19301863 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:19301909 original size:45 final size:44
Alignment explanation
Indices: 19301843--19301937 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
19301833 GGATTAGAGG
* *
19301843 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
19301888 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
19301932 TGTAAT
1 TGTAAT
19301938 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:19302114 original size:18 final size:17
Alignment explanation
Indices: 19302093--19302127 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
19302083 TTATTATTTA
19302093 ATATATTTTAATTAAAAT
1 ATATATTTTAA-TAAAAT
19302111 ATATATTTTAATAAAAT
1 ATATATTTTAATAAAAT
19302128 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATTTTAATAAAAT
Found at i:19302257 original size:147 final size:143
Alignment explanation
Indices: 19302018--19302286 Score: 459
Period size: 147 Copynumber: 1.9 Consensus size: 143
19302008 ATGATTATTG
19302018 TTATTGTTATTTAAATTTTAATAAATAATATCAAAAATAAATAATTTAATCATATTTAAACATAA
1 TTATTGTTATTTAAATTTTAATAAATAATATCAAAAATAAATAATTTAATCATATTTAAACATAA
* *
19302083 TTATTATTTAATATATTTTAATTAAAATATATATTTTAATAAAATTCTTAATAATTAGCAGAAAT
66 TTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAAT
19302148 TTGTTTTGGTAAA
131 TTGTTTTGGTAAA
*
19302161 TTATT-TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAA
1 TTATTGTTATTTAAATTTTAAT-A-A--A-TAATATCAAAAATAAATAATTTAATCATATTTAAA
19302225 CATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
61 CATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
19302287 ATATTCTTAT
Statistics
Matches: 118, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
142 16 0.14
143 6 0.05
144 1 0.01
146 1 0.01
147 94 0.80
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (143 bp):
TTATTGTTATTTAAATTTTAATAAATAATATCAAAAATAAATAATTTAATCATATTTAAACATAA
TTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAAT
TTGTTTTGGTAAA
Found at i:19302261 original size:18 final size:17
Alignment explanation
Indices: 19302240--19302274 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
19302230 TTATTATTAA
*
19302240 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
19302258 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
19302275 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:19302318 original size:54 final size:54
Alignment explanation
Indices: 19302260--19302438 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
19302250 ATTAAAATAT
*
19302260 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
19302314 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
19302377 TAT
53 -AC
*
19302380 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
19302434 ATAAT
1 ATAAT
19302439 ATATGATACT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:19302381 original size:18 final size:17
Alignment explanation
Indices: 19302360--19302394 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
19302350 TTATTATTAA
19302360 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
19302378 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
19302395 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:19302509 original size:18 final size:17
Alignment explanation
Indices: 19302470--19302501 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
19302460 TTTTAAATAA
19302470 TTAATATTAAATATATT
1 TTAATATTAAATATATT
19302487 TTAAT-TTAAATATAT
1 TTAATATTAAATATAT
19302502 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATTAAATATATT
Found at i:19302526 original size:120 final size:120
Alignment explanation
Indices: 19302223--19302515 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
19302213 ATCATATTTA
19302223 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
19302288 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
* *
19302343 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
19302408 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATA-AAATTTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAA--AT
* * *
19302464 AA-ATAATTAATATTAAATATATTTTAATTTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
19302516 TAAAATAATT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 3 0.02
120 155 0.96
121 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
Found at i:19302626 original size:91 final size:91
Alignment explanation
Indices: 19302531--19302738 Score: 258
Period size: 91 Copynumber: 2.3 Consensus size: 91
19302521 TAATTATAAC
* * * *
19302531 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
19302595 TAATATAAAATTTCATAAAATTCTTGA
65 TAATATAAAATTTCATAAAATTCTTAA
* * *
19302622 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* * * *
19302687 GATATATAATTTCATGAAATTGTTAA
66 AATATAAAATTTCATAAAATTCTTAA
*
19302713 TAATAAAATGT-TCTTATATGAATTTA
1 TAAT-AAAT-TATATTATATGAATTTA
19302739 CTAAAATCAA
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
91 79 0.77
92 22 0.22
93 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATAAAATTTCATAAAATTCTTAA
Found at i:19324631 original size:18 final size:18
Alignment explanation
Indices: 19324610--19324644 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
19324600 TACTAAAAAA
19324610 TAAAAAATTAAATTAAAT
1 TAAAAAATTAAATTAAAT
*
19324628 TAAAAAATTTAATTAAA
1 TAAAAAATTAAATTAAA
19324645 GCCCTCGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TAAAAAATTAAATTAAAT
Found at i:19327700 original size:22 final size:24
Alignment explanation
Indices: 19327640--19327702 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 24
19327630 CACATTAAAA
* *
19327640 ATATAAACAATGAAAA-TATAGAT
1 ATATAAAAAATCAAAATTATAGAT
* *
19327663 ATATAAAAATTCAAAATTATATAT
1 ATATAAAAAATCAAAATTATAGAT
19327687 -TATAAAAAAT-AAAATT
1 ATATAAAAAATCAAAATT
19327703 TAAAAAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
22 6 0.18
23 22 0.65
24 6 0.18
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (24 bp):
ATATAAAAAATCAAAATTATAGAT
Found at i:19327776 original size:16 final size:18
Alignment explanation
Indices: 19327755--19327787 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
19327745 AATATAAAAA
19327755 AAAAG-TTAAAA-TAATT
1 AAAAGTTTAAAAGTAATT
19327771 AAAAGTTTAAAAGTAAT
1 AAAAGTTTAAAAGTAAT
19327788 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 6 0.40
18 4 0.27
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (18 bp):
AAAAGTTTAAAAGTAATT
Found at i:19335997 original size:16 final size:17
Alignment explanation
Indices: 19335967--19336002 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
19335957 CTATTAGTAA
*
19335967 TTAAACTAAAGATAATT
1 TTAAACTAAAAATAATT
19335984 TTAAA-TAAAAATAATT
1 TTAAACTAAAAATAATT
19336000 TTA
1 TTA
19336003 CTAATATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (17 bp):
TTAAACTAAAAATAATT
Found at i:19337783 original size:22 final size:22
Alignment explanation
Indices: 19337753--19337799 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
19337743 AAAATTTACA
19337753 AAAGAAGAAGATAGAAAG-AAAG
1 AAAGAAGAAGA-AGAAAGAAAAG
*
19337775 AAAGGAGAAGAAGAAAGAAAAG
1 AAAGAAGAAGAAGAAAGAAAAG
19337797 AAA
1 AAA
19337800 AGGTAGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (22 bp):
AAAGAAGAAGAAGAAAGAAAAG
Found at i:19344210 original size:25 final size:25
Alignment explanation
Indices: 19344182--19344249 Score: 73
Period size: 30 Copynumber: 2.5 Consensus size: 25
19344172 TATTTTGGTA
19344182 TTTATTTTATTTTCGGATTTTATTT
1 TTTATTTTATTTTCGGATTTTATTT
*
19344207 TTTAAAATATATTATTTTCGTATTTTATTT
1 TTT---AT-T-TTATTTTCGGATTTTATTT
*
19344237 TTTATATTATTTT
1 TTTATTTTATTTT
19344250 AGTACATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
25 10 0.28
27 2 0.06
28 2 0.06
29 1 0.03
30 21 0.58
ACGTcount: A:0.24, C:0.03, G:0.04, T:0.69
Consensus pattern (25 bp):
TTTATTTTATTTTCGGATTTTATTT
Found at i:19344497 original size:13 final size:12
Alignment explanation
Indices: 19344471--19344504 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
19344461 ATTTTGGCCG
*
19344471 TTTATTTTTTAT
1 TTTATTTTTGAT
19344483 TTTATTTTCTGAT
1 TTTATTTT-TGAT
19344496 TTTATTTTT
1 TTTATTTTT
19344505 TAAAATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (12 bp):
TTTATTTTTGAT
Found at i:19345218 original size:13 final size:13
Alignment explanation
Indices: 19345202--19345228 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
19345192 TTGTTTTTTT
19345202 ATTTTATTTTCAA
1 ATTTTATTTTCAA
19345215 ATTTTATTTTCAA
1 ATTTTATTTTCAA
19345228 A
1 A
19345229 ATATGCTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTTTATTTTCAA
Found at i:19345280 original size:146 final size:146
Alignment explanation
Indices: 19344182--19345360 Score: 1702
Period size: 144 Copynumber: 8.1 Consensus size: 146
19344172 TATTTTGGTA
*
19344182 TTTATTTTATTTTCGGATTTTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTAT
1 TTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
* *
19344247 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATACTAATTTAATAAAAAACTCT
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATATTAATTTAGTAAAAAACTCT
19344312 GATTTTGGCCGTTTGTTTT
131 GATTTTGGCC--TT-TTTT
* *
19344331 TTTATTTTATTTTCGGATTTTACTTTTTAAAATATATTATTTTCGTATTTTA-TTTTTATATTAT
1 TTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
* * *
19344395 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATACTAATTTAATAAAAAACTTT
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATATTAATTTAGTAAAAAACTCT
19344460 GATTTTGGCCGTTTATTT
131 GATTTTGGCC-TTT-TTT
*
19344478 TTTATTTTATTTTCTGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTTTTATAT
1 TTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA---TTTTTTATAT
*
19344543 TATTTTAGTACATAATGTTTCAAATGTATTATTTTA--TTTTTTTATATTAATTTAGAAAAAAAA
63 TATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATATTAATTTAG-TAAAAAA
*
19344606 CTCTGATTTTGGCCCTTTTT
127 CTCTGATTTTGGCCTTTTTT
* *
19344626 ATT-TTTTATTTTTGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
1 TTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
* *
19344690 TTTAGTACATAATGTTTC--ATGTATTATTTTAGTTTTTTTTTATATTAATTTAGTAAAAATCTG
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAG-TTTTTTTTATATTAATTTAGTAAAAAACTC
*
19344753 TGATTTTGGCCTTTTTA
130 TGATTTTGGCCTTTTTT
** *
19344770 TTTATTTTGCTTTCAGATTTTA-TTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
1 TTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
* *
19344834 TTTAGTACATAATGTTTCAAATGTATTATTTTAG-TTTTTTTATATTTATTTAG-AAAAAAATCT
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATATTAATTTAGTAAAAAACTCT
* *
19344897 GATTTTGGCCCTGTTT
131 GATTTTGGCCTTTTTT
* * *
19344913 TAT-TTTTATTTTCAGATTTTATTTTTTAAAATATATTATTTTCGTA---T-TTTTTTATATTAT
1 TTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
* *
19344973 TTTAGTACATAATGTTTC--ATGTATTATTTTAGTTTTTTTTATATTAATTTAGTAAAAATCTGT
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATATTAATTTAGTAAAAAACTCT
*
19345036 GATTTTGGCC-CTTTT
131 GATTTTGGCCTTTTTT
* *
19345051 TTTATTTTGTTTTCGGATTTTATTTTTTAAAATACACTATTTTCGTATTTTATTTTTTATATTAT
1 TTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
*
19345116 TTTAGTAAATAATGTTTCAAATGTATTATTTTAG-TTTTTTTATATTAATTTAGTAAAAAACTCT
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATATTAATTTAGTAAAAAACTCT
*
19345180 AATTTTGGCCGTTTGTTTT
131 GATTTTGGCC--TT-TTTT
** * *
19345199 TTTATTTTATTTTCAAATTTTA-TTTTCAAAATATGCTATTTTCGTATTTTATTTTTT-TATTAT
1 TTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
* * * *
19345262 TTTAGTACATAATATTTCATATGTATTATTTTAG-TATATTTATATTAATTTAGTAAAAAACTCT
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATATTAATTTAGTAAAAAACTCT
19345326 GATTTTGGCC--TTTT
131 GATTTTGGCCTTTTTT
*
19345340 TTTATTTTATTTTTGGATTTT
1 TTTATTTTATTTTCGGATTTT
19345361 TTAAAATATA
Statistics
Matches: 938, Mismatches: 66, Indels: 60
0.88 0.06 0.06
Matches are distributed among these distances:
137 14 0.01
138 23 0.02
139 87 0.09
140 1 0.00
141 22 0.02
142 30 0.03
143 75 0.08
144 170 0.18
145 47 0.05
146 89 0.09
147 132 0.14
148 114 0.12
149 70 0.07
150 19 0.02
151 45 0.05
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (146 bp):
TTTATTTTATTTTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
TTTAGTACATAATGTTTCAAATGTATTATTTTAGTTTTTTTTATATTAATTTAGTAAAAAACTCT
GATTTTGGCCTTTTTT
Found at i:19345373 original size:14 final size:14
Alignment explanation
Indices: 19345356--19345384 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
19345346 TTATTTTTGG
19345356 ATTTTTTAAAATAT
1 ATTTTTTAAAATAT
19345370 ATTTTTTAAAATAT
1 ATTTTTTAAAATAT
19345384 A
1 A
19345385 CTATTAAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTTTTAAAATAT
Found at i:19346042 original size:22 final size:22
Alignment explanation
Indices: 19346014--19346058 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
19346004 CAAAAGAAAA
*
19346014 GGCAGTGAGCAGTCTCGTCGGT
1 GGCAGTGAGCAGTCCCGTCGGT
*
19346036 GGCAGTGAGGAGTCCCGTCGGT
1 GGCAGTGAGCAGTCCCGTCGGT
19346058 G
1 G
19346059 CAGAGCAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.13, C:0.22, G:0.44, T:0.20
Consensus pattern (22 bp):
GGCAGTGAGCAGTCCCGTCGGT
Found at i:19347797 original size:75 final size:75
Alignment explanation
Indices: 19347674--19347827 Score: 290
Period size: 75 Copynumber: 2.1 Consensus size: 75
19347664 ATATCCACAT
*
19347674 ATAAGTACTTTGTAACATTTATTACTAGAAATGTCTAAATCACTGTGAAGTCTATAATGACACTA
1 ATAAGTACTTAGTAACATTTATTACTAGAAATGTCTAAATCACTGTGAAGTCTATAATGACACTA
19347739 AGTCAACAAA
66 AGTCAACAAA
*
19347749 ATAAGTACTTAGTAACATTTATTACTAGAAATGTCTAAATCACTGTGAAGTCTATAATGTCACTA
1 ATAAGTACTTAGTAACATTTATTACTAGAAATGTCTAAATCACTGTGAAGTCTATAATGACACTA
19347814 AGTCAACAAA
66 AGTCAACAAA
19347824 ATAA
1 ATAA
19347828 ATATAATTTT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (75 bp):
ATAAGTACTTAGTAACATTTATTACTAGAAATGTCTAAATCACTGTGAAGTCTATAATGACACTA
AGTCAACAAA
Found at i:19348987 original size:17 final size:16
Alignment explanation
Indices: 19348952--19348989 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
19348942 ATAAATAGAC
19348952 AGAGAATAAAGAACAA
1 AGAGAATAAAGAACAA
*
19348968 AGAGAATAAGAGAGCAA
1 AGAGAATAA-AGAACAA
19348985 AGAGA
1 AGAGA
19348990 GAGCGTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.63, C:0.05, G:0.26, T:0.05
Consensus pattern (16 bp):
AGAGAATAAAGAACAA
Found at i:19349436 original size:19 final size:19
Alignment explanation
Indices: 19349409--19349448 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
19349399 ACTATATACA
*
19349409 TTATTTTACTTCTT-TTTTT
1 TTATCTTACTT-TTGTTTTT
19349428 TTATCTTACTTTTGTTTTT
1 TTATCTTACTTTTGTTTTT
19349447 TT
1 TT
19349449 TCGAGACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.10, C:0.10, G:0.03, T:0.78
Consensus pattern (19 bp):
TTATCTTACTTTTGTTTTT
Found at i:19352694 original size:11 final size:9
Alignment explanation
Indices: 19352670--19352711 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
19352660 AGAATAAAAC
19352670 TTGAGAGAA
1 TTGAGAGAA
19352679 TTGAGAGAA
1 TTGAGAGAA
*
19352688 TTGTGAGAA
1 TTGAGAGAA
*
19352697 TTGAGAGAG
1 TTGAGAGAA
19352706 TTGAGA
1 TTGAGA
19352712 CTTTAGAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.38, C:0.00, G:0.36, T:0.26
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:19355256 original size:18 final size:18
Alignment explanation
Indices: 19355220--19355273 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 18
19355210 CTAAAGTTAA
*
19355220 TATTATTTATATTTGTTA-
1 TATTATTT-TATTTTTTAT
19355238 TATCTA-TTTATTTATTTAT
1 TAT-TATTTTATTT-TTTAT
19355257 TATTATTTTATTTTTTA
1 TATTATTTTATTTTTTA
19355274 AATATTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
17 5 0.16
18 14 0.45
19 12 0.39
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (18 bp):
TATTATTTTATTTTTTAT
Found at i:19355279 original size:19 final size:18
Alignment explanation
Indices: 19355216--19355279 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 18
19355206 ATATCTAAAG
*
19355216 TTAATATTATTTATATTTG
1 TTAATATTATTT-TATTTT
19355235 TT-ATATCTA-TTTATTTAT
1 TTAATAT-TATTTTATTT-T
*
19355253 TTATTATTATTTTATTTT
1 TTAATATTATTTTATTTT
19355271 TTAAATATT
1 TT-AATATT
19355280 TAAATTTGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
17 5 0.14
18 13 0.35
19 19 0.51
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTAATATTATTTTATTTT
Found at i:19358668 original size:17 final size:17
Alignment explanation
Indices: 19358646--19358679 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
19358636 TTTGCATATT
19358646 ATCTACCTACTGTCTGA
1 ATCTACCTACTGTCTGA
19358663 ATCTACCTACTGTCTGA
1 ATCTACCTACTGTCTGA
19358680 TAAAGTACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (17 bp):
ATCTACCTACTGTCTGA
Found at i:19362211 original size:21 final size:21
Alignment explanation
Indices: 19362187--19362232 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
19362177 TAGAATCTTG
*
19362187 AATCCCAAATCTTAAACACCA
1 AATCCCAAACCTTAAACACCA
* * *
19362208 AATCTCAAACCTTGAACTCCA
1 AATCCCAAACCTTAAACACCA
19362229 AATC
1 AATC
19362233 AAAACCCTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.33, G:0.02, T:0.22
Consensus pattern (21 bp):
AATCCCAAACCTTAAACACCA
Found at i:19362299 original size:28 final size:28
Alignment explanation
Indices: 19362261--19362316 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
19362251 GCTTGATTCG
* *
19362261 AGTTTGGGGTTCAATATTTAGAA-TTCAA
1 AGTTTGAGGTTCAAGATTTA-AAGTTCAA
19362289 AGTTTGAGGTTCAAGATTTAAAGTTCAA
1 AGTTTGAGGTTCAAGATTTAAAGTTCAA
19362317 GGTTCAAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.08
28 23 0.92
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (28 bp):
AGTTTGAGGTTCAAGATTTAAAGTTCAA
Found at i:19363018 original size:14 final size:14
Alignment explanation
Indices: 19362972--19363019 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
19362962 ATTTCAAGGC
*
19362972 TTTTTTAAAAATAT
1 TTTTTTAAAAATAA
**
19362986 TTTTTTAATTA-AA
1 TTTTTTAAAAATAA
19362999 TTTTTTAAAAATAA
1 TTTTTTAAAAATAA
*
19363013 TATTTTA
1 TTTTTTA
19363020 TTTGGTGGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
13 10 0.37
14 17 0.63
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TTTTTTAAAAATAA
Found at i:19366954 original size:30 final size:30
Alignment explanation
Indices: 19366920--19366981 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
19366910 GCTCAACCTA
* **
19366920 GAGGATGAACATATGGTGGAACTCGACCAG
1 GAGGATCAACATATAATGGAACTCGACCAG
*
19366950 GAGGATCAACATATAATGGAGCTCGACCAG
1 GAGGATCAACATATAATGGAACTCGACCAG
19366980 GA
1 GA
19366982 CACATGGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.16
Consensus pattern (30 bp):
GAGGATCAACATATAATGGAACTCGACCAG
Found at i:19369217 original size:18 final size:18
Alignment explanation
Indices: 19369194--19369237 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
19369184 CTGCAACAGT
19369194 AAAAAAAAACTGAAAAAG
1 AAAAAAAAACTGAAAAAG
* *
19369212 AAAAAAACACTGAAAATG
1 AAAAAAAAACTGAAAAAG
19369230 AAAAAAAA
1 AAAAAAAA
19369238 TAAAAAAAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.77, C:0.07, G:0.09, T:0.07
Consensus pattern (18 bp):
AAAAAAAAACTGAAAAAG
Found at i:19369292 original size:27 final size:27
Alignment explanation
Indices: 19369261--19369330 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
19369251 ATGTTGGTGC
*
19369261 CAGAGGTGGCACCAGTGTTGCCTCTGG
1 CAGAGGCGGCACCAGTGTTGCCTCTGG
*
19369288 CAGAGGCGGCACCAATGTTGCCTCTGG
1 CAGAGGCGGCACCAGTGTTGCCTCTGG
19369315 CAGAGGCGGCACCAGT
1 CAGAGGCGGCACCAGT
19369331 TGTGTGGGTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.19, C:0.29, G:0.36, T:0.17
Consensus pattern (27 bp):
CAGAGGCGGCACCAGTGTTGCCTCTGG
Found at i:19369596 original size:145 final size:145
Alignment explanation
Indices: 19369409--19370266 Score: 1169
Period size: 145 Copynumber: 6.0 Consensus size: 145
19369399 ATAAGTAAAA
* * * * * *
19369409 TATTTTCGTATATTATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTA
* *
19369473 TTTTTTATATTAATTTAATAAATAACCCTGATTTT-G-ACATTTTTTCGTATTTTTTTCGTATCT
66 TTTTTTATATT-TTTTAATAAATAACCCTGATTTTAGCAC-TTTATTCGTATTTTTTTCGTATCT
19369536 TATTTTTTAAAATATAT
129 TATTTTTTAAAATATAT
*
19369553 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTA
* *
19369618 TTATTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTTGTATTTTTTTCGTATCTT
66 TTTTTTATATTTTTT-AATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTT
19369683 ATTTTTTAAAATATAT
130 ATTTTTTAAAATATAT
* * *
19369699 TATTTT-TTATTTTATTTCTTTATATTATTTTAGTACATAATGGTCCAAATGTATTATTTAAAGT
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTT-AAGT
* * *
19369763 ATTATTTATGTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATATT
65 ATTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTT
19369828 ATTTTTTAAAATATAT
130 ATTTTTTAAAATATAT
* * * * * *
19369844 TATTTTTGTATTTTA-TT-TTTATATTATTTTAGCAAAAAATATTTCAAATGTATTATGTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGT-
* * *
19369907 TTTTTTTATATTAATTTAATAAATAACCCTGATTTT-G-AC---A--C----TTTCTTCGTATCT
65 ATTTTTTATATT-TTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCT
19369961 TATTTTTTAAAATATAT
129 TATTTTTTAAAATATAT
* *
19369978 TATTTTAGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTA
19370043 TTTTTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTCGTA-TTTTTT-GTATCTT
66 TTTTTTATATTTTTT-AATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTT
19370106 ATTTTTTAAAATATAT
130 ATTTTTTAAAATATAT
* *
19370122 TATTTTTGTATTTTATTTCTTTATATTATTTTAGTACATAATATTTCAAATGTATTATTTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGT-
* *
19370187 TTTTTTTATATTTTTTTAATAAATAACCTTGATTTTAGCACTTTATTCGTATTTTTATTTTCGTA
65 ATTTTTTATA-TTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTA--TTT-TTTTCGTA
*
19370252 TATTATTTTATTAAA
126 TCTTATTTT-TTAAA
19370267 TTAATATAAT
Statistics
Matches: 637, Mismatches: 48, Indels: 51
0.87 0.07 0.07
Matches are distributed among these distances:
134 45 0.07
135 32 0.05
136 40 0.06
137 2 0.00
138 1 0.00
140 2 0.00
142 1 0.00
143 6 0.01
144 148 0.23
145 258 0.41
146 78 0.12
147 2 0.00
148 2 0.00
149 4 0.01
150 11 0.02
151 5 0.01
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.56
Consensus pattern (145 bp):
TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTA
TTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTTA
TTTTTTAAAATATAT
Found at i:19369726 original size:13 final size:12
Alignment explanation
Indices: 19369694--19369729 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
19369684 TTTTTTAAAA
19369694 TATATTATTTTT
1 TATATTATTTTT
*
19369706 TATTTTATTTCTT
1 TATATTATTT-TT
19369719 TATATTATTTT
1 TATATTATTTT
19369730 AGTACATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (12 bp):
TATATTATTTTT
Found at i:19370065 original size:280 final size:277
Alignment explanation
Indices: 19369409--19370247 Score: 1143
Period size: 280 Copynumber: 3.0 Consensus size: 277
19369399 ATAAGTAAAA
* * * * * *
19369409 TATTTTCGTATATTATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTG
1 TATTTT-GTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTA
* *
19369473 TTTTTTATATTAATTTAATAAATAACCCTGATTTT-G-ACATTTTTTCGTATTTTTTTCGTATCT
65 TTTTTTATATT-TTTTAATAAATAACCCTGATTTTAGCAC-TTTATTCGTATTTTTTTCGTATCT
* *
19369536 TATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCA
128 TATTTTTTAAAATATATTATTTTTGTATTTTATTT-TT-ATATTATTTTAGTACATAATATTTCA
* * *
19369601 AATGTATTATTTAAGT-ATTATTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTT
191 AATGTATTATTTAAGTGTTTTTTTATATTTTTT-AATAAATAACCCTGATTTT-G-AC---ACTT
19369665 GTATTTTTTTCGTATCTTATTTTTTAAAATATAT
250 -TA-----TTCGTATCTTATTTTTTAAAATATAT
* * *
19369699 TATTTTTTATTTTATTTCTTTATATTATTTTAGTACATAATGGTCCAAATGTATTATTTAAAGTA
1 TATTTTGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTT-AAGTA
* * *
19369764 TTATTTATGTTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATATTA
65 TTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTTA
* * *
19369829 TTTTTTAAAATATATTATTTTTGTATTTTATTTTTATATTATTTTAGCAAAAAATATTTCAAATG
130 TTTTTTAAAATATATTATTTTTGTATTTTATTTTTATATTATTTTAGTACATAATATTTCAAATG
* * *
19369894 TATTATGTAAGTGTTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTAT
195 TATTATTTAAGTGTTTTTTTATATT-TTTTAATAAATAACCCTGATTTTGACACTTTATTCGTAT
19369959 CTTATTTTTTAAAATATAT
259 CTTATTTTTTAAAATATAT
*
19369978 TATTTTAGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTA
1 TATTTT-GTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTA
19370043 TTTTTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTCGTA-TTTTTT-GTATCTT
65 TTTTTTATATTTTTT-AATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTT
19370106 ATTTTTTAAAATATATTATTTTTGTATTTTATTTCTTTATATTATTTTAGTACATAATATTTCAA
129 ATTTTTTAAAATATATTATTTTTGTATTTTA-TT-TTTATATTATTTTAGTACATAATATTTCAA
*
19370171 ATGTATTATTTAAGTGTTTTTTTATATTTTTTTAATAAATAACCTTGATTTT-AGCACTTTATTC
192 ATGTATTATTTAAGTGTTTTTTTATA-TTTTTTAATAAATAACCCTGATTTTGA-CACTTTATTC
*
19370235 GTATTTTTATTTT
255 GTA-TCTTATTTT
19370248 CGTATATTAT
Statistics
Matches: 496, Mismatches: 40, Indels: 35
0.87 0.07 0.06
Matches are distributed among these distances:
278 37 0.07
279 59 0.12
280 168 0.34
281 10 0.02
284 1 0.00
285 3 0.01
288 2 0.00
289 47 0.09
290 94 0.19
291 73 0.15
292 2 0.00
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.56
Consensus pattern (277 bp):
TATTTTGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTAT
TTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATCTTAT
TTTTTAAAATATATTATTTTTGTATTTTATTTTTATATTATTTTAGTACATAATATTTCAAATGT
ATTATTTAAGTGTTTTTTTATATTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTATCT
TATTTTTTAAAATATAT
Found at i:19370224 original size:425 final size:430
Alignment explanation
Indices: 19369409--19370266 Score: 1410
Period size: 425 Copynumber: 2.0 Consensus size: 430
19369399 ATAAGTAAAA
*
19369409 TATTTTCGTATATTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTGT
1 TATTTTCGTATATTATTTTTTATATTATTTTAGCAAAAAATATTTCAAATGTATTATGTAAGTGT
*
19369474 TTTTTATATTAATTTAATAAATAACCCTGATTTTGACATTTTTTCGTATTTTTTTCGTATCTTAT
66 TTTTTATATTAATTTAATAAATAACCCTGATTTTGACA-----TC---TTTTCTTCGTATCTTAT
*
19369539 TTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAAT
123 TTTTTAAAATATATTATTTTAGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAAT
*
19369604 GTATTATTTAAGTATTATTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTTGTAT
188 GTATTATTTAAGTATTATTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTCGTAT
19369669 TTTTTTCGTATCTTATTTTTTAAAATATATTATTTTTTATTTTATTTCTTTATATTATTTTAGTA
253 TTTTTTCGTATCTTATTTTTTAAAATATATTATTTTTTATTTTATTTCTTTATATTATTTTAGTA
*
19369734 CATAATGGTCCAAATGTATTATTTAAAGTATTATTTATGTTTTTTAATAAATAACCCTGATTTTA
318 CATAATAGTCCAAATGTATTATTTAAAGTATTATTTATGTTTTTTAATAAATAACCCTGATTTTA
19369799 GCACTTTATTCGTA-TTT-TTTTCGTATATTATTTT-TTAAAATATAT
383 GCACTTTATTCGTATTTTATTTTCGTATATTATTTTATTAAAATATAT
* *
19369844 TATTTTTGTATTTTA-TTTTTATATTATTTTAGCAAAAAATATTTCAAATGTATTATGTAAGTGT
1 TATTTTCGTATATTATTTTTTATATTATTTTAGCAAAAAATATTTCAAATGTATTATGTAAGTG-
19369908 TTTTTTATATTAATTTAATAAATAACCCTGATTTTGACA-C-TTTCTTCGTATCTTATTTTTTAA
65 TTTTTTATATTAATTTAATAAATAACCCTGATTTTGACATCTTTTCTTCGTATCTTATTTTTTAA
19369971 AATATATTATTTTAGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTAT
130 AATATATTATTTTAGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTAT
*
19370036 TTAAGTATTTTTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTCGTA-TTTTTT-
195 TTAAGTATTATTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTC
19370099 GTATCTTATTTTTTAAAATATATTATTTTTGTATTTTATTTCTTTATATTATTTTAGTACATAAT
260 GTATCTTATTTTTTAAAATATATTATTTTT-TATTTTATTTCTTTATATTATTTTAGTACATAAT
* * * * * *
19370164 ATTTCAAATGTATTATTT-AAGTGTTTTTTTATATTTTTTTAATAAATAACCTTGATTTTAGCAC
324 AGTCCAAATGTATTATTTAAAGT-ATTATTTAT-GTTTTTTAATAAATAACCCTGATTTTAGCAC
19370228 TTTATTCGTATTTTTATTTTCGTATATTATTTTATTAAA
387 TTTATTCGTA-TTTTATTTTCGTATATTATTTTATTAAA
19370267 TTAATATAAT
Statistics
Matches: 401, Mismatches: 14, Indels: 22
0.92 0.03 0.05
Matches are distributed among these distances:
423 34 0.08
424 62 0.15
425 180 0.45
427 3 0.01
428 17 0.04
429 6 0.01
434 47 0.12
435 52 0.13
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.56
Consensus pattern (430 bp):
TATTTTCGTATATTATTTTTTATATTATTTTAGCAAAAAATATTTCAAATGTATTATGTAAGTGT
TTTTTATATTAATTTAATAAATAACCCTGATTTTGACATCTTTTCTTCGTATCTTATTTTTTAAA
ATATATTATTTTAGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATT
TAAGTATTATTTATATTTTTTCAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCG
TATCTTATTTTTTAAAATATATTATTTTTTATTTTATTTCTTTATATTATTTTAGTACATAATAG
TCCAAATGTATTATTTAAAGTATTATTTATGTTTTTTAATAAATAACCCTGATTTTAGCACTTTA
TTCGTATTTTATTTTCGTATATTATTTTATTAAAATATAT
Found at i:19373410 original size:3 final size:3
Alignment explanation
Indices: 19373402--19373427 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
19373392 GTTTCATCAC
19373402 CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CT
19373428 GAGAAAATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:19374249 original size:3 final size:3
Alignment explanation
Indices: 19374241--19374265 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
19374231 AAGATATAAA
19374241 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
19374266 ACCCATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:19374326 original size:18 final size:19
Alignment explanation
Indices: 19374299--19374340 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
19374289 TCAAACTCTA
*
19374299 AAAAATAATTAATTAAAAT
1 AAAAATAATTAAATAAAAT
*
19374318 AAAAA-AATTAAATAATAT
1 AAAAATAATTAAATAAAAT
19374336 AAAAA
1 AAAAA
19374341 CTTTAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAAATAATTAAATAAAAT
Found at i:19374333 original size:22 final size:22
Alignment explanation
Indices: 19374298--19374339 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
19374288 CTCAAACTCT
*
19374298 AAAAAATAATTAAT-TAAAATA
1 AAAAAATAAATAATATAAAATA
19374319 AAAAAATTAAATAATATAAAA
1 AAAAAA-TAAATAATATAAAA
19374340 ACTTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 7 0.39
23 5 0.28
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (22 bp):
AAAAAATAAATAATATAAAATA
Found at i:19378043 original size:33 final size:33
Alignment explanation
Indices: 19378006--19378094 Score: 126
Period size: 33 Copynumber: 2.7 Consensus size: 33
19377996 TACCTAAAAG
*
19378006 GTACAACTGGAAAAGGAAATGTACACTGTGTAT
1 GTACAACTTGAAAAGGAAATGTACACTGTGTAT
* * * *
19378039 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTGTGTAT
19378072 GTAC-ACTTGAAAAGGAAATGTAC
1 GTACAACTTGAAAAGGAAATGTAC
19378095 GCCTTATGTG
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 17 0.35
33 32 0.65
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.25
Consensus pattern (33 bp):
GTACAACTTGAAAAGGAAATGTACACTGTGTAT
Found at i:19378105 original size:32 final size:32
Alignment explanation
Indices: 19378006--19378117 Score: 111
Period size: 33 Copynumber: 3.4 Consensus size: 32
19377996 TACCTAAAAG
* * *
19378006 GTACAACTGGAAAAGGAAATGTACACTGTGTAT
1 GTACAACTTGAAAAGGAAATGTACCCT-TGTGT
* * *
19378039 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTAC-CCTTGTGT
*
19378072 GTAC-ACTTGAAAAGGAAATGTACGCCTTATGT
1 GTACAACTTGAAAAGGAAATGTAC-CCTTGTGT
19378104 GTACAA-TGTGAAAA
1 GTACAACT-TGAAAA
19378118 ATGGTAGCTT
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
32 28 0.43
33 36 0.55
34 1 0.02
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.26
Consensus pattern (32 bp):
GTACAACTTGAAAAGGAAATGTACCCTTGTGT
Found at i:19378147 original size:31 final size:31
Alignment explanation
Indices: 19378111--19378284 Score: 251
Period size: 31 Copynumber: 5.5 Consensus size: 31
19378101 TGTGTACAAT
*
19378111 GTGAAAAATGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
19378142 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
19378173 GTGAAAAGTGGTAGCTTCGACTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
19378204 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* ** *
19378235 GAGAATTGTGGTAGCTTCGGCTACAAGTGA-CAA
1 GTGAAAAGTGGTAGCTTCGGCTAC--CTGATC-A
*
19378268 GTGATAAGTGGTAGCTT
1 GTGAAAAGTGGTAGCTT
19378285 TAGCTACACT
Statistics
Matches: 129, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
31 111 0.86
32 1 0.01
33 17 0.13
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:19378408 original size:27 final size:27
Alignment explanation
Indices: 19378351--19378412 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
19378341 TTGAACTATG
* * *
19378351 GCAAAGTGATAAAGTGTGCTAATCACG
1 GCAAAGTGATAAAGTGTGCCAAACACA
* *
19378378 GCAAAGTGATATAGTGTGCCAAACATA
1 GCAAAGTGATAAAGTGTGCCAAACACA
19378405 GCAAAGTG
1 GCAAAGTG
19378413 TTCAGTGATC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.21
Consensus pattern (27 bp):
GCAAAGTGATAAAGTGTGCCAAACACA
Found at i:19380931 original size:26 final size:26
Alignment explanation
Indices: 19380895--19380946 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19380885 AAGTTAAGTA
*
19380895 GAAAGATTATGTTTTGCTCAGCTAGG
1 GAAAGATTATGTTTTACTCAGCTAGG
19380921 GAAAGATTATGTTTTACTCAGCTAGG
1 GAAAGATTATGTTTTACTCAGCTAGG
19380947 CTTTTTAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35
Consensus pattern (26 bp):
GAAAGATTATGTTTTACTCAGCTAGG
Found at i:19382180 original size:234 final size:234
Alignment explanation
Indices: 19381771--19382240 Score: 913
Period size: 234 Copynumber: 2.0 Consensus size: 234
19381761 TGACTCTATC
*
19381771 ATAAGCTTTTTTTAAGTCAATCTTCAACGCCATATCATACTTTTTACCCTCAAAACTTCTTATAG
1 ATAAGCTTTTTTTAAGTCAATCTTCAACGCCATATCATACTTTTTACCCTCAAAACTTCTGATAG
19381836 AATGTATTGCCTAGTAGGCAACCACAATGTTATCCACAATGTCCCTACCTGTTACAAAACTTACT
66 AATGTATTGCCTAGTAGGCAACCACAATGTTATCCACAATGTCCCTACCTGTTACAAAACTTACT
*
19381901 TTATTTTGTTTAACAAGCTTAACCAACATTGGTGTAAGCCTATTCACAATTGTCTTCATTACGAT
131 TGATTTTGTTTAACAAGCTTAACCAACATTGGTGTAAGCCTATTCACAATTGTCTTCATTACGAT
19381966 TTTATACAACACATTACACAAATTGATAGGTCTAAATTG
196 TTTATACAACACATTACACAAATTGATAGGTCTAAATTG
19382005 ATAAGCTTTTTTTAAGTCAATCTTCAACGCCATATCATACTTTTTACCCTCAAAACTTCTGATAG
1 ATAAGCTTTTTTTAAGTCAATCTTCAACGCCATATCATACTTTTTACCCTCAAAACTTCTGATAG
*
19382070 AATGTATTGCCTAGTAGGCAATCACAATGTTATCCACAATGTCCCTACCTGTTACAAAACTTACT
66 AATGTATTGCCTAGTAGGCAACCACAATGTTATCCACAATGTCCCTACCTGTTACAAAACTTACT
19382135 TGATTTTGTTTAACAAGCTTAACCAACATTGGTGTAAGCCTATTCACAATTGTCTTCATTACGAT
131 TGATTTTGTTTAACAAGCTTAACCAACATTGGTGTAAGCCTATTCACAATTGTCTTCATTACGAT
19382200 TTTATACAACACATTACACAAATTGATAGGTCTAAATTG
196 TTTATACAACACATTACACAAATTGATAGGTCTAAATTG
19382239 AT
1 AT
19382241 TAATTCTTTT
Statistics
Matches: 233, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
234 233 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.36
Consensus pattern (234 bp):
ATAAGCTTTTTTTAAGTCAATCTTCAACGCCATATCATACTTTTTACCCTCAAAACTTCTGATAG
AATGTATTGCCTAGTAGGCAACCACAATGTTATCCACAATGTCCCTACCTGTTACAAAACTTACT
TGATTTTGTTTAACAAGCTTAACCAACATTGGTGTAAGCCTATTCACAATTGTCTTCATTACGAT
TTTATACAACACATTACACAAATTGATAGGTCTAAATTG
Found at i:19386787 original size:85 final size:85
Alignment explanation
Indices: 19386688--19386853 Score: 269
Period size: 85 Copynumber: 2.0 Consensus size: 85
19386678 TAAAATTAAT
* * *
19386688 AACTCTATCATAAATAACTTCTTCCGTACCTAAAAAATTATGTTTATCCATTGTTTTCTATTTCA
1 AACTCTATCATAAATAACTTCTTCCATAACTAAAAAATTATGTTTATCCATTATTTTCTATTTCA
19386753 TATATTGGCCAAAGTTAAGG
66 TATATTGGCCAAAGTTAAGG
* *
19386773 AACTCTATCATAAATAACTTCTTCCATAACTACAAATTTATGTTTATCCATTATTTTCTATTTCA
1 AACTCTATCATAAATAACTTCTTCCATAACTAAAAAATTATGTTTATCCATTATTTTCTATTTCA
* *
19386838 TATTTTGGTCAAAGTT
66 TATATTGGCCAAAGTT
19386854 TAAGTCATTA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 74 1.00
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (85 bp):
AACTCTATCATAAATAACTTCTTCCATAACTAAAAAATTATGTTTATCCATTATTTTCTATTTCA
TATATTGGCCAAAGTTAAGG
Found at i:19387099 original size:88 final size:88
Alignment explanation
Indices: 19386947--19387197 Score: 355
Period size: 88 Copynumber: 2.9 Consensus size: 88
19386937 TGAAGATGTA
* * * *
19386947 GAAAAAGAACATATTTTTAAAATTCCTCAATGATCTACCATTTCTATTAATTGTCTTTTCAATAT
1 GAAAAAGAACATATTTTTAAATTTCCTCAATGATCTACTATTTCTATTCATTGTCTTTTAAATAT
*
19387012 CAAT-AAAAGCGATATTATATTT-
66 CAATCAAAA-CGATATCATATTTG
* * * *
19387034 GAATAAAGAAAATATTTTTAATTTTCTTCAATGATCTACTATTTCTATTCATTGTCTTTTTAATA
1 GAA-AAAGAACATATTTTTAAATTTCCTCAATGATCTACTATTTCTATTCATTGTCTTTTAAATA
*
19387099 TCAATCAAAATGATATCATATTTG
65 TCAATCAAAACGATATCATATTTG
*
19387123 GAAAAAGAACATATTTTTAAATTTCCTCAATGATCTA-TCATTTCTGTTCATTGTCTTTTAAATA
1 GAAAAAGAACATATTTTTAAATTTCCTCAATGATCTACT-ATTTCTATTCATTGTCTTTTAAATA
19387187 TCAATCAAAAC
65 TCAATCAAAAC
19387198 CATCATTCCC
Statistics
Matches: 145, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
87 4 0.03
88 134 0.92
89 7 0.05
ACGTcount: A:0.37, C:0.14, G:0.07, T:0.42
Consensus pattern (88 bp):
GAAAAAGAACATATTTTTAAATTTCCTCAATGATCTACTATTTCTATTCATTGTCTTTTAAATAT
CAATCAAAACGATATCATATTTG
Found at i:19387455 original size:22 final size:22
Alignment explanation
Indices: 19387413--19387455 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
19387403 AATTATCAAA
* *
19387413 ATTTCATTTTTTAATTATTTTT
1 ATTTCATATTATAATTATTTTT
19387435 ATTTCATATTATACATT-TTTT
1 ATTTCATATTATA-ATTATTTT
19387456 AAAAATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (22 bp):
ATTTCATATTATAATTATTTTT
Found at i:19389566 original size:13 final size:13
Alignment explanation
Indices: 19389548--19389581 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
19389538 GAATATTATT
19389548 ATTCAAAA-TCAA
1 ATTCAAAATTCAA
19389560 GATTCAAAATTCAA
1 -ATTCAAAATTCAA
19389574 ATTCAAAA
1 ATTCAAAA
19389582 ATAGAAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.26
Consensus pattern (13 bp):
ATTCAAAATTCAA
Found at i:19390782 original size:13 final size:13
Alignment explanation
Indices: 19390764--19390817 Score: 60
Period size: 13 Copynumber: 4.3 Consensus size: 13
19390754 AAAGAAATAA
*
19390764 CTAATATTTTATG
1 CTAATATATTATG
19390777 CTAATATATTATG
1 CTAATATATTATG
19390790 CTAATA-A--ATG
1 CTAATATATTATG
*
19390800 CTAAATATATTATA
1 CT-AATATATTATG
19390814 CTAA
1 CTAA
19390818 GAAATACTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
10 5 0.14
11 4 0.11
12 2 0.06
13 20 0.57
14 4 0.11
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.43
Consensus pattern (13 bp):
CTAATATATTATG
Found at i:19390809 original size:24 final size:24
Alignment explanation
Indices: 19390774--19390829 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
19390764 CTAATATTTT
* *
19390774 ATGCT-AATATATTATGCTAATAA
1 ATGCTAAATATATTATACTAAGAA
19390797 ATGCTAAATATATTATACTAAGAA
1 ATGCTAAATATATTATACTAAGAA
*
19390821 ATACTAAAT
1 ATGCTAAAT
19390830 CTTCTAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (24 bp):
ATGCTAAATATATTATACTAAGAA
Found at i:19393338 original size:29 final size:30
Alignment explanation
Indices: 19393292--19393359 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
19393282 GTTACATAAG
*
19393292 GTAAATACTCAAAATTTG-AGGGCTAA-AGT
1 GTAAATA-TCAAAATTTGAAGGACTAACAGT
*
19393321 GTAAATATGAAAATTTTGAAGGACTAACAGT
1 GTAAATATCAAAA-TTTGAAGGACTAACAGT
*
19393352 GCAAATAT
1 GTAAATAT
19393360 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 5 0.15
29 11 0.33
30 7 0.21
31 10 0.30
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAATTTGAAGGACTAACAGT
Found at i:19393619 original size:13 final size:13
Alignment explanation
Indices: 19393603--19393627 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19393593 TTATATTTTC
19393603 TAAGATATTTTAA
1 TAAGATATTTTAA
19393616 TAAGATATTTTA
1 TAAGATATTTTA
19393628 TTATTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAAGATATTTTAA
Found at i:19398115 original size:3 final size:3
Alignment explanation
Indices: 19398107--19398155 Score: 64
Period size: 3 Copynumber: 16.0 Consensus size: 3
19398097 TCAATTTGTC
*
19398107 TAT TAT TAT TAT TAT TAT T-T ATAT TAC TATT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT
19398153 TAT
1 TAT
19398156 ATACATATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 1 0.02
3 37 0.90
4 3 0.07
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:19398284 original size:19 final size:20
Alignment explanation
Indices: 19398260--19398297 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
19398250 TTTATAATAC
*
19398260 TATTATTATTA-TCTTATTT
1 TATTATTATCATTCTTATTT
19398279 TATTATTATCATTCTTATT
1 TATTATTATCATTCTTATT
19398298 AATACAGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (20 bp):
TATTATTATCATTCTTATTT
Found at i:19398521 original size:23 final size:24
Alignment explanation
Indices: 19398494--19398559 Score: 86
Period size: 23 Copynumber: 2.9 Consensus size: 24
19398484 CTAAAATATA
19398494 TATATGTTTTTATATA-TATTA-T
1 TATATGTTTTTATATACTATTAGT
*
19398516 GTATATGTTTTTA-ATATTATTAGT
1 -TATATGTTTTTATATACTATTAGT
19398540 TATAT-TTTTTATATACTATT
1 TATATGTTTTTATATACTATT
19398560 TTGTGTATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
22 9 0.23
23 29 0.74
24 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (24 bp):
TATATGTTTTTATATACTATTAGT
Found at i:19398751 original size:13 final size:12
Alignment explanation
Indices: 19398734--19398782 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 12
19398724 TACGTATACA
19398734 TTGTATATATAT
1 TTGTATATATAT
19398746 TATGTATATATAT
1 T-TGTATATATAT
*
19398759 TTTTAATATTATAT
1 TTGT-ATA-TATAT
*
19398773 TTTTATATAT
1 TTGTATATAT
19398783 TACGTATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 6 0.18
13 18 0.55
14 9 0.27
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (12 bp):
TTGTATATATAT
Found at i:19398782 original size:15 final size:15
Alignment explanation
Indices: 19398750--19398784 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
19398740 ATATATTATG
19398750 TATA-TATATTTTTA
1 TATATTATATTTTTA
19398764 -ATATTATATTTTTA
1 TATATTATATTTTTA
19398778 TATATTA
1 TATATTA
19398785 CGTATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 3 0.16
14 10 0.53
15 6 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TATATTATATTTTTA
Found at i:19398797 original size:22 final size:22
Alignment explanation
Indices: 19398719--19398802 Score: 65
Period size: 22 Copynumber: 4.1 Consensus size: 22
19398709 ATTTTAATAC
* * *
19398719 TATATTACGTATACATTGTATA
1 TATATTACGTATATATTTTTTA
* *
19398741 TATATTATGTATATATATTTT-
1 TATATTACGTATATATTTTTTA
19398762 TA-A-TA--T-TATA-TTTTTA
1 TATATTACGTATATATTTTTTA
*
19398778 TATATTACGTATATATTTTTAA
1 TATATTACGTATATATTTTTTA
19398800 TAT
1 TAT
19398803 CATCCCATGT
Statistics
Matches: 48, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
15 4 0.08
16 6 0.12
17 2 0.04
18 2 0.04
19 2 0.04
20 2 0.04
21 6 0.12
22 24 0.50
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.56
Consensus pattern (22 bp):
TATATTACGTATATATTTTTTA
Found at i:19398960 original size:25 final size:25
Alignment explanation
Indices: 19398911--19398974 Score: 85
Period size: 24 Copynumber: 2.5 Consensus size: 25
19398901 TATATGTATG
*
19398911 TATATATATATTTTTCTTTTATTATAT
1 TATAT-TAT-TTTTTCTTCTATTATAT
19398938 TATCATTATTTTTTCTTCT-TTATAT
1 TAT-ATTATTTTTTCTTCTATTATAT
19398963 TATATTATTTTT
1 TATATTATTTTT
19398975 ACGTACATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
24 9 0.26
25 9 0.26
26 9 0.26
27 6 0.17
28 2 0.06
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (25 bp):
TATATTATTTTTTCTTCTATTATAT
Found at i:19404317 original size:22 final size:22
Alignment explanation
Indices: 19404266--19404318 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
19404256 ATACCCTCCC
*
19404266 AAGGCCAACCTAAAAACGAACA
1 AAGGCCAGCCTAAAAACGAACA
19404288 AAGGCCAGCCTAAAAACGAACA
1 AAGGCCAGCCTAAAAACGAACA
19404310 AAGGCCAGC
1 AAGGCCAGC
19404319 AAGATCCAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.49, C:0.28, G:0.19, T:0.04
Consensus pattern (22 bp):
AAGGCCAGCCTAAAAACGAACA
Found at i:19411233 original size:75 final size:74
Alignment explanation
Indices: 19411117--19411577 Score: 529
Period size: 75 Copynumber: 6.1 Consensus size: 74
19411107 TGATGTTTTT
* ** * * *
19411117 ATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAG
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
19411180 GTATTTTCA
66 GTATTTTCA
* *
19411189 ATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGCTGA
1 ATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
*
19411254 GGTAATTTCA
65 GGTATTTTCA
* *
19411264 ATTTCTGTTTGTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
1 ATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
*
19411327 GGTATTTTTA
65 GGTATTTTCA
* * * * * *
19411337 GTTTCTGTTTTAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACACT
1 ATTTCTGTTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT
*
19411402 GAGGTATTTTTTA
63 GAGGTA-TTTTCA
* *
19411415 ATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
1 ATTTCT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
*
19411480 GGTATTTTTA
65 GGTATTTTCA
* * * *
19411490 ATTTCTATTTCTTC-TAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC-GGCTTACATG
1 ATTTCT-GTT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACG
19411553 CTGAGGTATTTTCA
61 CTGAGGTATTTTCA
*
19411567 ATTTATGTTTT
1 ATTTCTGTTTT
19411578 TTCAATTTAT
Statistics
Matches: 341, Mismatches: 33, Indels: 27
0.85 0.08 0.07
Matches are distributed among these distances:
72 8 0.02
73 68 0.20
74 4 0.01
75 154 0.45
76 16 0.05
77 34 0.10
78 53 0.16
79 4 0.01
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (74 bp):
ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
GTATTTTCA
Found at i:19411581 original size:15 final size:16
Alignment explanation
Indices: 19411561--19411593 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
19411551 TGCTGAGGTA
19411561 TTTTCAATTTATG-TT
1 TTTTCAATTTATGCTT
19411576 TTTTCAATTTATGCTT
1 TTTTCAATTTATGCTT
19411592 TT
1 TT
19411594 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.18, C:0.09, G:0.06, T:0.67
Consensus pattern (16 bp):
TTTTCAATTTATGCTT
Found at i:19411582 original size:153 final size:149
Alignment explanation
Indices: 19411117--19411578 Score: 523
Period size: 153 Copynumber: 3.1 Consensus size: 149
19411107 TGATGTTTTT
* ** ** * *
19411117 ATTTCTG-TTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGA
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
* * *
19411179 GGTATTTTCAATTT-TTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 GGTATTTTTAATTTCTTTTC-TTC-AAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC-
* *
19411243 GGATAC-GCTGAGGTAATTTCA
128 GGTTACAGCTGAGGTATTTTCA
* *
19411264 ATTTCTGTTTGTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGG-CACGCTG
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGCTG
* **
19411326 AGGTATTTTTAGTTTCTGTTT-TAAAAAAAAATCAACTCATATTGCGAGA-AGTGAGTTGAGCCT
65 AGGTATTTTTAATTTCT-TTTCT-TCAAAAAATCAACTCATATTGCGAGAGA-TGAGTTGAGCCT
* *
19411389 CGGGTCGCACA-CTGAGGTATTTTTTA
127 C-GGT--TACAGCTGAGGTA-TTTTCA
*
19411415 ATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
1 ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
*
19411480 GGTATTTTTAATTTCTATTTCTTCTAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGG
66 GGTATTTTTAATTTCT-TTTCTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGG
19411545 CTTACATGCTGAGGTATTTTCA
130 -TTACA-GCTGAGGTATTTTCA
*
19411567 ATTTATGTTTTT
1 ATTTCTGTTTTT
19411579 TCAATTTATG
Statistics
Matches: 265, Mismatches: 32, Indels: 31
0.81 0.10 0.09
Matches are distributed among these distances:
147 7 0.03
148 96 0.36
149 2 0.01
150 12 0.05
151 18 0.07
152 20 0.08
153 108 0.41
154 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (149 bp):
ATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGA
GGTATTTTTAATTTCTTTTCTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGT
TACAGCTGAGGTATTTTCA
Found at i:19411642 original size:90 final size:89
Alignment explanation
Indices: 19411505--19411756 Score: 348
Period size: 90 Copynumber: 2.8 Consensus size: 89
19411495 TATTTCTTCT
* *
19411505 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCTTACATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
*
19411570 TATGTTTTTTC-AATTTATGCTTTTC
66 TATGTTTTTGCAAATTT-TG-TTTTC
* * * *
19411595 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTC-AAT
19411660 TT-TG-TTTTGCAAATTTTGTTTTC
65 TTATGTTTTTGCAAATTTTGTTTTC
* * * * *
19411683 AAAAATCAACTCTTATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATGCTAAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
19411748 TATGTTTTT
66 TATGTTTTT
19411757 AATGTTTAGT
Statistics
Matches: 142, Mismatches: 16, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
87 4 0.03
88 60 0.42
89 11 0.08
90 63 0.44
91 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (89 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATT
TATGTTTTTGCAAATTTTGTTTTC
Found at i:19411677 original size:14 final size:13
Alignment explanation
Indices: 19411651--19411686 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
19411641 TGCCGAGGTA
19411651 TTTTCAAAATTTG
1 TTTTCAAAATTTG
*
19411664 TTTTGCAAATTTTG
1 TTTT-CAAAATTTG
19411678 TTTTCAAAA
1 TTTTCAAAA
19411687 ATCAACTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.53
Consensus pattern (13 bp):
TTTTCAAAATTTG
Found at i:19411769 original size:88 final size:87
Alignment explanation
Indices: 19411484--19411805 Score: 339
Period size: 88 Copynumber: 3.6 Consensus size: 87
19411474 CGCTGAGGTA
* *
19411484 TTTTTAATTTCTATTTCTTCTAAAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCGGCTT
1 TTTTTAATTT-TAGTT-TTC-AAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGCTC
19411548 ACATGCTGAGGTATTTTCAATTTATG
62 ACATGCTGAGGTATTTTCAATTTATG
* * *
19411574 TTTTTTCAA-TTTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTC
1 -TTTTT-AATTTTA-G-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTC
* *
19411638 ACATGCCGAGGTATTTTCAAAATT-TG
62 ACATGCTGAGGTATTTTC-AATTTATG
* * *
19411664 TTTTGCAAATTTT-GTTTTCAAAAATCAACTCTTATTGCGAGAAGTGAGTTGAGCCTTGGCTCAC
1 TTTT--TAATTTTAGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCAC
* *
19411728 ATGCTAAGCTATTTTCAATTTATG
64 ATGCTGAGGTATTTTCAATTTATG
* * * * *
19411752 TTTTTAATGTTTAGTTTT-AAAGAGTCAATTCATATTGTGAAAAATGAGTTGAGC
1 TTTTTAAT-TTTAGTTTTCAAA-AATCAACTCATATTGCGAGAAGTGAGTTGAGC
19411806 TCAAGATCAC
Statistics
Matches: 195, Mismatches: 24, Indels: 27
0.79 0.10 0.11
Matches are distributed among these distances:
86 3 0.02
87 10 0.05
88 95 0.49
89 5 0.03
90 60 0.31
91 18 0.09
92 4 0.02
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (87 bp):
TTTTTAATTTTAGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCTCACAT
GCTGAGGTATTTTCAATTTATG
Found at i:19413359 original size:21 final size:21
Alignment explanation
Indices: 19413334--19413387 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
19413324 AATTTGTCTA
19413334 TTATTTTTTTTATATTAC-TAT
1 TTATTTTTTTTATA-TACATAT
* *
19413355 TTATTATTATTATATACATAT
1 TTATTTTTTTTATATACATAT
* *
19413376 ATATGTTTTTTA
1 TTATTTTTTTTA
19413388 CCATCGTTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (21 bp):
TTATTTTTTTTATATACATAT
Found at i:19413496 original size:19 final size:20
Alignment explanation
Indices: 19413472--19413509 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
19413462 TTTATAATAC
*
19413472 TATTATTATTA-TCTTATTT
1 TATTATTATCATTCTTATTT
19413491 TATTATTATCATTCTTATT
1 TATTATTATCATTCTTATT
19413510 AATACATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (20 bp):
TATTATTATCATTCTTATTT
Done.