Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 67 of 352
Found at i:21106517 original size:43 final size:43
Alignment explanation
Indices: 21106456--21106537 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
21106446 CATGCTGATA
21106456 TCTTCGATTTGTTCCCTGACAATACAGAGACGCCAAATCTGCT
1 TCTTCGATTTGTTCCCTGACAATACAGAGACGCCAAATCTGCT
*
21106499 TCTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATC
1 TCTTCGATTTGTTCCCTGACAATACAGAGACGCCAAATC
21106538 ATCTTAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (43 bp):
TCTTCGATTTGTTCCCTGACAATACAGAGACGCCAAATCTGCT
Found at i:21106771 original size:175 final size:176
Alignment explanation
Indices: 21106573--21106941 Score: 571
Period size: 176 Copynumber: 2.1 Consensus size: 176
21106563 ACGTTAAAAC
* * * *
21106573 CAAATCTGCTGTGTCTTCGATTTGCTCCTTGTGAACACAAGGATG-CCAAATCATCTTGGATCTG
1 CAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCCAAATCATCTTGCATCTG
* *
21106637 CTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGC
66 CTTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGC
* ** *
21106701 CAGATTTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGT
130 CAGATCTGTTATCTTGGATCTGCTTTAATGTGAAAACATCCGAAAGT
*
21106748 CAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGCATCTG
1 CAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCCAAATCATCTTGCATCTG
* *
21106813 CTTCAGTATAAACATCTTAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATTGAGATGCC
66 CTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCC
**
21106878 AGATCTGTTATCTTGGATCTGCTTTAATGTGAAAACATTTGAAAGT
131 AGATCTGTTATCTTGGATCTGCTTTAATGTGAAAACATCCGAAAGT
*
21106924 CAGATCTGCTATGTCTTC
1 CAAATCTGCTATGTCTTC
21106942 AAGTTGCTTC
Statistics
Matches: 176, Mismatches: 16, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
175 41 0.23
176 132 0.75
177 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (176 bp):
CAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCCAAATCATCTTGCATCTG
CTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCC
AGATCTGTTATCTTGGATCTGCTTTAATGTGAAAACATCCGAAAGT
Found at i:21107023 original size:93 final size:93
Alignment explanation
Indices: 21106860--21107030 Score: 220
Period size: 93 Copynumber: 1.8 Consensus size: 93
21106850 ACCTGCTCTC
* * * ** *
21106860 CGTCGAAATTGAGATGCCAGATCTGTTATCTTGGATCTGCTTTAATGTGAAAACATTTGAAAGTC
1 CGTCGAAATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTAATGTGAAAACACGTGAAAGCC
*
21106925 AGATCTGCTATGTCTTCAAGTTGCTTCT
66 AGATCTGCCATGTCTTCAAGTTGCTTCT
* * *
21106953 CGTCGAAGATAGAGAAGCCAAATCTTGTTATCTTGGATCTGC-TTCA-GTGTAAACACGTGAAGG
1 CGTCGAA-ATAGAGAAGCCAAATC-TGTTATCTTGGATCTGCTTTAATGTGAAAACACGTGAAAG
21107016 CCAGATCTGCCATGT
64 CCAGATCTGCCATGT
21107031 TTTGGTCTGT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
93 33 0.50
94 16 0.24
95 17 0.26
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (93 bp):
CGTCGAAATAGAGAAGCCAAATCTGTTATCTTGGATCTGCTTTAATGTGAAAACACGTGAAAGCC
AGATCTGCCATGTCTTCAAGTTGCTTCT
Found at i:21115752 original size:46 final size:45
Alignment explanation
Indices: 21115702--21116135 Score: 568
Period size: 46 Copynumber: 9.6 Consensus size: 45
21115692 GCCATAGTGC
* * *
21115702 CTTTCAACTATGGTCTTACTCATTTTCTATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACA-TTTCTATCATGTTGCCATGGTAT
*** * * **
21115748 CTTTCAACCATGGTCTTGTTCATTTCATGTTACATTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTC-TATCATGTTGCCATGGTAT
** * * *
21115794 CTTTCAACCATGGTCTTATTCATTCCCATCATGTTGTCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCTATCATGTTGCCATGGTAT
* *
21115839 CTTTCAACCATGGCCTTACACA-TTCATATCATGTTGCCATAGTAT
1 CTTTCAACCATGGTCTTACACATTTC-TATCATGTTGCCATGGTAT
* *
21115884 CTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACA-TTTCTATCATGTTGCCATGGTAT
*
21115930 CTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTGT
1 CTTTCAACCATGGTCTTACACATTTC-TATCATGTTGCCATGGTAT
* * *
21115976 CTATCAACCATGGTCTTACATATTTC-ATCATGTTGCGATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCTATCATGTTGCCATGGTAT
*
21116020 CTTTCAACCATGGTCTTATACATTTCATATCATGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTC-TATCATGTTGCCATGGTAT
21116066 CTTTCAACCATGGTCTTACACATTTC-ATCATGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCTATCATGTTGCCATGGTAT
*
21116110 CTTTCAACCATAGTCTTACACATTTC
1 CTTTCAACCATGGTCTTACACATTTC
21116136 ATTTCAGAAA
Statistics
Matches: 342, Mismatches: 39, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
44 84 0.25
45 76 0.22
46 180 0.53
47 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (45 bp):
CTTTCAACCATGGTCTTACACATTTCTATCATGTTGCCATGGTAT
Found at i:21115889 original size:90 final size:91
Alignment explanation
Indices: 21115702--21116137 Score: 599
Period size: 90 Copynumber: 4.8 Consensus size: 91
21115692 GCCATAGTGC
* * * * **
21115702 CTTTCAACTATGGTCTTACTCATTTTCTATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTGT
1 CTTTCAACCATGGTCTTACACA-TTTCCATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
* * * **
21115767 TCATTTCATGTTACATTGCCATGGTAT
65 ACATTTCATATCATGTTGCCATGGTAT
** * * *
21115794 CTTTCAACCATGGTCTTATTCATTCCCATCATGTTGTCATGGTATCTTTCAACCATGGCCTTACA
1 CTTTCAACCATGGTCTTACACATTTCCATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACA
*
21115859 CA-TTCATATCATGTTGCCATAGTAT
66 CATTTCATATCATGTTGCCATGGTAT
** *
21115884 CTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 CTTTCAACCATGGTCTTACACA-TTTCCATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
*
21115949 ACATTTCATATCATGTTGCCATGGTGT
65 ACATTTCATATCATGTTGCCATGGTAT
* * * *
21115976 CTATCAACCATGGTCTTACATATTT-CATCATGTTGCGATGGTATCTTTCAACCATGGTCTTATA
1 CTTTCAACCATGGTCTTACACATTTCCATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACA
21116040 CATTTCATATCATGTTGCCATGGTAT
66 CATTTCATATCATGTTGCCATGGTAT
*
21116066 CTTTCAACCATGGTCTTACACATTT-CATCATGTTGCCATGGTATCTTTCAACCATAGTCTTACA
1 CTTTCAACCATGGTCTTACACATTTCCATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACA
21116130 CATTTCAT
66 CATTTCAT
21116138 TTCAGAAAGC
Statistics
Matches: 305, Mismatches: 37, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
90 165 0.54
91 79 0.26
92 61 0.20
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (91 bp):
CTTTCAACCATGGTCTTACACATTTCCATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACA
CATTTCATATCATGTTGCCATGGTAT
Found at i:21115922 original size:136 final size:135
Alignment explanation
Indices: 21115702--21116133 Score: 573
Period size: 136 Copynumber: 3.2 Consensus size: 135
21115692 GCCATAGTGC
* * * *
21115702 CTTTCAACTATGGTCTTACTCATTTTCTATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTGT
1 CTTTCAACCATGGTCTTACACA--TTCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAT
* * * * ** * *
21115767 TCATTTCATGTTAC-ATTGCCATGGTATCTTTCAACCATGGTCTTATTCATTCCCATCATGTTGT
64 ACATTTCAT-ATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCACATCATGTTGC
21115831 CATGGTAT
128 CATGGTAT
* * *
21115839 CTTTCAACCATGGCCTTACACATTCATATCATGTTGCCATAGTATCTTTCAACCATGGTCTTACA
1 CTTTCAACCATGGTCTTACACATTC-TATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATA
* *
21115904 CATTTTATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCC
65 CATTTCATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTCACATCATGTTGCC
*
21115969 ATGGTGT
129 ATGGTAT
* * *
21115976 CTATCAACCATGGTCTTACATATT-TCATCATGTTGCGATGGTATCTTTCAACCATGGTCTTATA
1 CTTTCAACCATGGTCTTACACATTCT-ATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATA
* *
21116040 CATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATT-TCATCATGTTGCCA
65 CATTTCATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCACATCATGTTGCCA
21116104 TGGTAT
130 TGGTAT
*
21116110 CTTTCAACCATAGTCTTACACATT
1 CTTTCAACCATGGTCTTACACATT
21116134 TCATTTCAGA
Statistics
Matches: 259, Mismatches: 32, Indels: 11
0.86 0.11 0.04
Matches are distributed among these distances:
134 38 0.15
135 8 0.03
136 154 0.59
137 59 0.23
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (135 bp):
CTTTCAACCATGGTCTTACACATTCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATAC
ATTTCATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTCACATCATGTTGCCAT
GGTAT
Found at i:21115926 original size:182 final size:181
Alignment explanation
Indices: 21115686--21116137 Score: 624
Period size: 182 Copynumber: 2.5 Consensus size: 181
21115676 TTATCTTCGA
* ** * * *
21115686 CATGATGCCATAGTGCCTTTCAACTATGGTCTTACTCATTTTCTATCAGGTTGCCATGGTATCTT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTT-TATCATGTTGCCATGGTATCTT
*** * * *
21115751 TCAACCATGGTCTTGTTCATTTCATGTTACATTGCCATGGTATCTTTCAACCATGGTCTTATTCA
65 TCAACCATGGTCTTACACATTTCATATCACATTGCCATGGTATCTATCAACCATGGTCTTA--CA
21115816 T-TCCCATCATGTTGTC-ATGGTATCTTTCAACCATGGCCTTACACA-TTCATAT
128 TATCCCATCATGTTG-CGATGGTATCTTTCAACCATGGCCTTACACATTTCATAT
*
21115868 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTT-TATCATGTTGCCATGGTATCTT
** *
21115933 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTGTCTATCAACCATGGTCTTACATA
65 TCAACCATGGTCTTACACATTTCATATCACATTGCCATGGTATCTATCAACCATGGTCTTACATA
** * *
21115998 TTTCATCATGTTGCGATGGTATCTTTCAACCATGGTCTTATACATTTCATAT
130 TCCCATCATGTTGCGATGGTATCTTTCAACCATGGCCTTACACATTTCATAT
* *
21116050 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATCATGTTGCCATGGTATCTTT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTTTATCATGTTGCCATGGTATCTTT
*
21116114 CAACCATAGTCTTACACATTTCAT
66 CAACCATGGTCTTACACATTTCAT
21116138 TTCAGAAAGC
Statistics
Matches: 242, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
180 48 0.20
181 41 0.17
182 153 0.63
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.40
Consensus pattern (181 bp):
CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTTTATCATGTTGCCATGGTATCTTT
CAACCATGGTCTTACACATTTCATATCACATTGCCATGGTATCTATCAACCATGGTCTTACATAT
CCCATCATGTTGCGATGGTATCTTTCAACCATGGCCTTACACATTTCATAT
Found at i:21121727 original size:32 final size:34
Alignment explanation
Indices: 21121691--21121768 Score: 79
Period size: 34 Copynumber: 2.3 Consensus size: 34
21121681 AGTGTAAAAT
21121691 AATATAATAACAAAATATAAAATAG-TATA-ATA
1 AATATAATAACAAAATATAAAATAGATATAGATA
* * * *
21121723 AATATTATGTAATAAAATATAATATAGATATAGGTA
1 AATA-TA-ATAACAAAATATAAAATAGATATAGATA
21121759 AATAATAATA
1 AAT-ATAATA
21121769 TATAAATAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
32 4 0.11
33 2 0.06
34 16 0.44
35 6 0.17
36 7 0.19
37 1 0.03
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.32
Consensus pattern (34 bp):
AATATAATAACAAAATATAAAATAGATATAGATA
Found at i:21122511 original size:13 final size:13
Alignment explanation
Indices: 21122493--21122518 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21122483 TTTTTAGTAT
21122493 AAAAAATGAGTTC
1 AAAAAATGAGTTC
21122506 AAAAAATGAGTTC
1 AAAAAATGAGTTC
21122519 TGTTTTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (13 bp):
AAAAAATGAGTTC
Found at i:21124276 original size:21 final size:21
Alignment explanation
Indices: 21124250--21124302 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
21124240 CATTGTTTTT
*
21124250 AATCTCACCGCTACAATATCG
1 AATCTCACCGCTACAATAACG
* *
21124271 AATCTCACCTCTACAATAACT
1 AATCTCACCGCTACAATAACG
21124292 AATCTCACCGC
1 AATCTCACCGC
21124303 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.34, C:0.36, G:0.06, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACG
Found at i:21126597 original size:87 final size:87
Alignment explanation
Indices: 21126495--21126664 Score: 313
Period size: 87 Copynumber: 2.0 Consensus size: 87
21126485 TGCAATTAAA
* *
21126495 TTCTTTCAATAACATTTCAATTAGAGGACCAAGTTCATTTCATCCAATTTCAAATTCCCAATTTC
1 TTCTTTCAATAACATTTCAATTAGAAGACCAACTTCATTTCATCCAATTTCAAATTCCCAATTTC
21126560 ATTTATATCATTTCATCCGATG
66 ATTTATATCATTTCATCCGATG
*
21126582 TTCTTTCAATAACATTTCAATTTGAAGACCAACTTCATTTCATCCAATTTCAAATTCCCAATTTC
1 TTCTTTCAATAACATTTCAATTAGAAGACCAACTTCATTTCATCCAATTTCAAATTCCCAATTTC
21126647 ATTTATATCATTTCATCC
66 ATTTATATCATTTCATCC
21126665 AATAGAACCT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (87 bp):
TTCTTTCAATAACATTTCAATTAGAAGACCAACTTCATTTCATCCAATTTCAAATTCCCAATTTC
ATTTATATCATTTCATCCGATG
Found at i:21132220 original size:16 final size:16
Alignment explanation
Indices: 21132199--21132237 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
21132189 AACCCACAGA
* *
21132199 ATTTTTTTTATTTTTT
1 ATTTTTTTCATATTTT
21132215 ATTTTTTTCATATTTT
1 ATTTTTTTCATATTTT
21132231 ATTTTTT
1 ATTTTTT
21132238 GTACTTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (16 bp):
ATTTTTTTCATATTTT
Found at i:21133956 original size:26 final size:27
Alignment explanation
Indices: 21133898--21133949 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
21133888 ATTATTCTCT
* *
21133898 AAAATTTATTATAGATAAAATTTCAAA
1 AAAATATATTATAGAAAAAATTTCAAA
21133925 AAAATATATTATA-AAAAAATTTCAA
1 AAAATATATTATAGAAAAAATTTCAA
21133950 TGAAATAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (27 bp):
AAAATATATTATAGAAAAAATTTCAAA
Found at i:21143252 original size:18 final size:18
Alignment explanation
Indices: 21143229--21143264 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
21143219 GTAATTTGAG
*
21143229 TTTTTAATTAATATTTAT
1 TTTTTAATAAATATTTAT
*
21143247 TTTTTAATAAATGTTTAT
1 TTTTTAATAAATATTTAT
21143265 AAGATTAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTTTAATAAATATTTAT
Found at i:21151259 original size:20 final size:20
Alignment explanation
Indices: 21151236--21151277 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
21151226 TGCTCTACTT
21151236 AGGACCATATGCAGATAGGA
1 AGGACCATATGCAGATAGGA
21151256 AGGACCATATGCAGATAGGA
1 AGGACCATATGCAGATAGGA
21151276 AG
1 AG
21151278 TCATATCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.31, T:0.14
Consensus pattern (20 bp):
AGGACCATATGCAGATAGGA
Found at i:21167083 original size:50 final size:50
Alignment explanation
Indices: 21167008--21167184 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
21166998 CCATGGCAAC
**
21167008 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATGAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
*
21167058 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
*
21167108 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
* * *
21167158 CAAGTGAAAAGTGGTAGCTTCGACTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
21167185 CTGATCAGTG
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 95 0.81
51 23 0.19
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
Found at i:21167198 original size:31 final size:31
Alignment explanation
Indices: 21167160--21167277 Score: 191
Period size: 31 Copynumber: 3.8 Consensus size: 31
21167150 ACAAATGACA
*
21167160 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
21167191 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
21167222 AGTGAAAAATGATAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
21167253 AGTGAATAGTGGTAGCTTCAGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
21167278 AAGTGACAAG
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 80 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:21170710 original size:254 final size:253
Alignment explanation
Indices: 21170284--21171025 Score: 972
Period size: 254 Copynumber: 2.9 Consensus size: 253
21170274 GGCCGTGTGG
* * * *
21170284 GCATTCGATGTGAGGAACACAGCCGTGTCACAGCCCGTGTACATGCCCATGAAACTCTCTGACTT
1 GCATTCGATGTGAGGCACAC-GGCGTGTCCCAGCCCGTGTACATGCCCATAAAACTCTCTGACTT
* *
21170349 GGGTCACACGACCAAGTCACACGCCCATGTGTTAGGCCGTGTGTTATGGAATTAAGGTGCAGGGG
65 GGGTCACACGACC-AGTCACACGCTCATGTGCTAGGCCGTGTGTTATGGAATTAAGGTGCAGGGG
* * * * *
21170414 CCACATGGCTAAGCCACACGCCCGTATGCTAGGCCATGTGCAAAAACTTAGGCATTCTATTTCTC
129 TCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACTTAGGCATTCTATTTCTC
* * *
21170479 AAATTTAAAGATACAAGGGACACATGGCTAGGCCACACACCCATGTGCTAGGCCATGTAA
194 AAATTTAAAGATACAAGGGACACATCGCCAGACCACACACCCATGTGCTAGGCCATGTAA
*
21170539 GCATTCGATGTGAGGCACACGGTCGTGTCCCAACCCGTGTACATG-CCATAAAACTCTCTGACTT
1 GCATTCGATGTGAGGCACACGG-CGTGTCCCAGCCCGTGTACATGCCCATAAAACTCTCTGACTT
* *
21170603 GGGTTACATGACCGAGTCACACGCTCATGTGCTAGGCCGTGTGTTATGGAATTAAGGTGCAGGGG
65 GGGTCACACGACC-AGTCACACGCTCATGTGCTAGGCCGTGTGTTATGGAATTAAGGTGCAGGGG
* * * *
21170668 TCACACAGCCAAGCCACACGCCCGTGTGCTAGGCTGTGTGCAAAAACCTAGGCATTCTGTTTCTC
129 TCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACTTAGGCATTCTATTTCTC
* * * * **
21170733 AAATTTAAAGATA-TAGGAGACATATCGCCAGACCACACGCCCATGTGCTAGGCCGTGTGG
194 AAATTTAAAGATACAAGG-GACACATCGCCAGACCACACACCCATGTGCTAGGCCATGTAA
* * * * * *
21170793 GCATTTGATGTAAGGCATAAGGCTGTGTCCCAGCCCGTGTACATGCCCGTATAACTCTCTGACTT
1 GCATTCGATGTGAGGCACACGGC-GTGTCCCAGCCCGTGTACATGCCCATAAAACTCTCTGACTT
* * * * * * *
21170858 AGGTCACACGGCCAGGTCATACG-TCTGTGTGCTAGACCGTATGTTATGGAATTAAGGTGTAGGG
65 GGGTCACACGACCA-GTCACACGCTC-ATGTGCTAGGCCGTGTGTTATGGAATTAAGGTGCAGGG
* *
21170922 GTCACACGGCCAAGCCACACGCCCATGTGCTAGGCCGTGTGCAAAAA-TCTGGGCATTCTATTTC
128 GTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACT-TAGGCATTCTATTTC
*
21170986 TCAAATTTAAAGATACAGGGGACACA-CAGCCAGACCACAC
192 TCAAATTTAAAGATACAAGGGACACATC-GCCAGACCACAC
21171026 GTCCATGTTC
Statistics
Matches: 425, Mismatches: 53, Indels: 18
0.86 0.11 0.04
Matches are distributed among these distances:
253 4 0.01
254 224 0.53
255 195 0.46
256 2 0.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (253 bp):
GCATTCGATGTGAGGCACACGGCGTGTCCCAGCCCGTGTACATGCCCATAAAACTCTCTGACTTG
GGTCACACGACCAGTCACACGCTCATGTGCTAGGCCGTGTGTTATGGAATTAAGGTGCAGGGGTC
ACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACTTAGGCATTCTATTTCTCAA
ATTTAAAGATACAAGGGACACATCGCCAGACCACACACCCATGTGCTAGGCCATGTAA
Found at i:21170964 original size:255 final size:252
Alignment explanation
Indices: 21170274--21171046 Score: 980
Period size: 255 Copynumber: 3.0 Consensus size: 252
21170264 CCGTGTCTTT
* * *
21170274 GGCCGTGTGGGCATTCGATGTGAGGAACACA-GCCGTGTCACAGCCCGTGTACATGCCCATGAAA
1 GGCCGTGTGGGCATTCGATGTGAGGCACA-AGGCTGTGTCCCAGCCCGTGTACATGCCCAT-AAA
* * *
21170338 CTCTCTGACTTGGGTCACACGACCAAGTCACACGCCCATGTGTTAGGCCGTGTGTTATGGAATTA
64 CTCTCTGACTTGGGTCACACGACCAGGTCACACG-CTATGTGCTAGGCCGTGTGTTATGGAATTA
* * * * * *
21170403 AGGTGCAGGGGCCACATGGCTAAGCCACACGCCCGTATGCTAGGCCATGTGCAAAAACTTAGGCA
128 AGGTGCAGGGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACCTAGGCA
* * * *
21170468 TTCTATTTCTCAAATTTAAAGATACAAGGGACACATGGCTAGGCCACACACCCATGTGCTA
193 TTCTATTTCTCAAATTTAAAGATA-AAGGGACACATCGCCAGACCACACGCCCATGTGCTA
* ** * *
21170529 GGCCATGTAAGCATTCGATGTGAGGCACACGG-TCGTGTCCCAACCCGTGTACATG-CCATAAAA
1 GGCCGTGTGGGCATTCGATGTGAGGCACAAGGCT-GTGTCCCAGCCCGTGTACATGCCCAT-AAA
* *
21170592 CTCTCTGACTTGGGTTACATGACC-GAGTCACACGCTCATGTGCTAGGCCGTGTGTTATGGAATT
64 CTCTCTGACTTGGGTCACACGACCAG-GTCACACGCT-ATGTGCTAGGCCGTGTGTTATGGAATT
* *
21170656 AAGGTGCAGGGGTCACACAGCCAAGCCACACGCCCGTGTGCTAGGCTGTGTGCAAAAACCTAGGC
127 AAGGTGCAGGGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACCTAGGC
* * *
21170721 ATTCTGTTTCTCAAATTTAAAGATATAGGAGACATATCGCCAGACCACACGCCCATGTGCTA
192 ATTCTATTTCTCAAATTTAAAGATAAAGG-GACACATCGCCAGACCACACGCCCATGTGCTA
* * * *
21170783 GGCCGTGTGGGCATTTGATGTAAGGCATAAGGCTGTGTCCCAGCCCGTGTACATGCCCGTATAAC
1 GGCCGTGTGGGCATTCGATGTGAGGCACAAGGCTGTGTCCCAGCCCGTGTACATGCCCATA-AAC
* * * * * *
21170848 TCTCTGACTTAGGTCACACGGCCAGGTCATACGTCTGTGTGCTAGACCGTATGTTATGGAATTAA
65 TCTCTGACTTGGGTCACACGACCAGGTCACACG-CTATGTGCTAGGCCGTGTGTTATGGAATTAA
* * * *
21170913 GGTGTAGGGGTCACACGGCCAAGCCACACGCCCATGTGCTAGGCCGTGTGCAAAAATCTGGGCAT
129 GGTGCAGGGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACCTAGGCAT
* * *
21170978 TCTATTTCTCAAATTTAAAGATACAGGGGACACA-CAGCCAGACCACACGTCCATGTTCTA
194 TCTATTTCTCAAATTTAAAGATA-AAGGGACACATC-GCCAGACCACACGCCCATGTGCTA
*
21171038 GACCGTGTG
1 GGCCGTGTG
21171047 TCAAAGACAC
Statistics
Matches: 447, Mismatches: 59, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
253 4 0.01
254 218 0.49
255 220 0.49
256 5 0.01
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (252 bp):
GGCCGTGTGGGCATTCGATGTGAGGCACAAGGCTGTGTCCCAGCCCGTGTACATGCCCATAAACT
CTCTGACTTGGGTCACACGACCAGGTCACACGCTATGTGCTAGGCCGTGTGTTATGGAATTAAGG
TGCAGGGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACCTAGGCATTC
TATTTCTCAAATTTAAAGATAAAGGGACACATCGCCAGACCACACGCCCATGTGCTA
Found at i:21171904 original size:42 final size:42
Alignment explanation
Indices: 21171848--21171951 Score: 129
Period size: 42 Copynumber: 2.5 Consensus size: 42
21171838 GTGCTAAATA
* ** *
21171848 GAAACCCGTAAGGGTTGGTCAGAAGCTCATAAA-AGCTGAATG
1 GAAACCCATAAGGGTTGAACAGAAGCTCA-AAAGAGCTGAACG
* *
21171890 GAAATCCATAAGGGTTCAACAGAAGCTCAAAAGAGCTGAACG
1 GAAACCCATAAGGGTTGAACAGAAGCTCAAAAGAGCTGAACG
*
21171932 GAAACCCATTAGGGTTGAAC
1 GAAACCCATAAGGGTTGAAC
21171952 GAAAACTCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 3 0.06
42 49 0.94
ACGTcount: A:0.38, C:0.18, G:0.26, T:0.17
Consensus pattern (42 bp):
GAAACCCATAAGGGTTGAACAGAAGCTCAAAAGAGCTGAACG
Found at i:21172141 original size:21 final size:21
Alignment explanation
Indices: 21172116--21172183 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
21172106 GTGTTGGTCA
21172116 GAAACTCATAAAAGCTGAACG
1 GAAACTCATAAAAGCTGAACG
* ** * * *
21172137 GAAACCCATAAGGGTTCAACA
1 GAAACTCATAAAAGCTGAACG
*
21172158 GAAGCTCA-AAAGAGCTGAACG
1 GAAACTCATAAA-AGCTGAACG
21172179 GAAAC
1 GAAAC
21172184 CCATTAGGGT
Statistics
Matches: 32, Mismatches: 14, Indels: 2
0.67 0.29 0.04
Matches are distributed among these distances:
20 2 0.06
21 30 0.94
ACGTcount: A:0.46, C:0.21, G:0.22, T:0.12
Consensus pattern (21 bp):
GAAACTCATAAAAGCTGAACG
Found at i:21172174 original size:42 final size:42
Alignment explanation
Indices: 21172114--21172209 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
21172104 CCGTGTTGGT
21172114 CAGAAACTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAA
1 CAGAAACTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAA
* * *
21172156 CAGAAGCTCA-AAAGAGCTGAACGGAAACCCATTAGGGTTGAA
1 CAGAAACTCATAAA-AGCTGAACGGAAACCCATAAGGGTTCAA
21172198 C-GAAAACTCATA
1 CAG-AAACTCATA
21172210 TGAGTTAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
41 4 0.09
42 42 0.89
43 1 0.02
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.15
Consensus pattern (42 bp):
CAGAAACTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAA
Found at i:21172199 original size:21 final size:21
Alignment explanation
Indices: 21172131--21172209 Score: 68
Period size: 21 Copynumber: 3.8 Consensus size: 21
21172121 TCATAAAAGC
21172131 TGAACGGAAACCCATAAGGGT
1 TGAACGGAAACCCATAAGGGT
* * * * * * *
21172152 TCAACAGAAGCTCAAAAGAGC
1 TGAACGGAAACCCATAAGGGT
*
21172173 TGAACGGAAACCCATTAGGGT
1 TGAACGGAAACCCATAAGGGT
* *
21172194 TGAACGAAAACTCATA
1 TGAACGGAAACCCATA
21172210 TGAGTTAAAC
Statistics
Matches: 40, Mismatches: 18, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.15
Consensus pattern (21 bp):
TGAACGGAAACCCATAAGGGT
Found at i:21172297 original size:247 final size:247
Alignment explanation
Indices: 21171861--21172357 Score: 940
Period size: 247 Copynumber: 2.0 Consensus size: 247
21171851 ACCCGTAAGG
* * *
21171861 GTTGGTCAGAAGCTCATAAAAGCTGAATGGAAATCCATAAGGGTTCAACAGAAGCTCAAAAGAGC
1 GTTGGTCAGAAACTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAACAGAAGCTCAAAAGAGC
21171926 TGAACGGAAACCCATTAGGGTTGAACGAAAACTCATATGAGTTAAACAAAAACTTGTGAGAGCTA
66 TGAACGGAAACCCATTAGGGTTGAACGAAAACTCATATGAGTTAAACAAAAACTTGTGAGAGCTA
21171991 AATGGAAAGTAAACACGAAAGTTCGCAACAAATGCTAAACCTCGATTTACTTGAGTAATTTTTCG
131 AATGGAAAGTAAACACGAAAGTTCGCAACAAATGCTAAACCTCGATTTACTTGAGTAATTTTTCG
21172056 TCAATTCTTCCTTTGCTGTCTTTCACCACACAATGATTTTACTCAATCCCGT
196 TCAATTCTTCCTTTGCTGTCTTTCACCACACAATGATTTTACTCAATCCCGT
21172108 GTTGGTCAGAAACTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAACAGAAGCTCAAAAGAGC
1 GTTGGTCAGAAACTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAACAGAAGCTCAAAAGAGC
21172173 TGAACGGAAACCCATTAGGGTTGAACGAAAACTCATATGAGTTAAACAAAAACTTGTGAGAGCTA
66 TGAACGGAAACCCATTAGGGTTGAACGAAAACTCATATGAGTTAAACAAAAACTTGTGAGAGCTA
* *
21172238 AATGGAAAGTAAACACGAAAGTTCGCAACAAATGCTGAACCTCGATTTAGTTGAGTAATTTTTCG
131 AATGGAAAGTAAACACGAAAGTTCGCAACAAATGCTAAACCTCGATTTACTTGAGTAATTTTTCG
*
21172303 TCAATTCTTCCTTTGCTGTCTTTCACCACACAATGATTTTACTCAATCTCGT
196 TCAATTCTTCCTTTGCTGTCTTTCACCACACAATGATTTTACTCAATCCCGT
21172355 GTT
1 GTT
21172358 CCATTTGTTT
Statistics
Matches: 244, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
247 244 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (247 bp):
GTTGGTCAGAAACTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAACAGAAGCTCAAAAGAGC
TGAACGGAAACCCATTAGGGTTGAACGAAAACTCATATGAGTTAAACAAAAACTTGTGAGAGCTA
AATGGAAAGTAAACACGAAAGTTCGCAACAAATGCTAAACCTCGATTTACTTGAGTAATTTTTCG
TCAATTCTTCCTTTGCTGTCTTTCACCACACAATGATTTTACTCAATCCCGT
Found at i:21176818 original size:26 final size:25
Alignment explanation
Indices: 21176779--21176833 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
21176769 TATTTTGAGA
* *
21176779 TGATTATTTGAATTGGATTGAATAT
1 TGATTATTTGAATTGAAATGAATAT
21176804 TGATTATATTGAATTGAAATGAATAT
1 TGATTAT-TTGAATTGAAATGAATAT
21176830 TGAT
1 TGAT
21176834 GTGGAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 7 0.26
26 20 0.74
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.45
Consensus pattern (25 bp):
TGATTATTTGAATTGAAATGAATAT
Found at i:21177198 original size:45 final size:45
Alignment explanation
Indices: 21177141--21177244 Score: 145
Period size: 45 Copynumber: 2.3 Consensus size: 45
21177131 ACTACTGTTT
* **
21177141 CTGTTACCGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATA
1 CTGTTACTGTTACTGTTACCGATTCAACACTTTGTGTGTCGAATA
* * * *
21177186 TTGTTACTGTTACAGTTATCGATTCAACACTTTGTGTGTTGAATA
1 CTGTTACTGTTACTGTTACCGATTCAACACTTTGTGTGTCGAATA
21177231 CTGTTACTGTTACT
1 CTGTTACTGTTACT
21177245 ATTCCGAATT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.42
Consensus pattern (45 bp):
CTGTTACTGTTACTGTTACCGATTCAACACTTTGTGTGTCGAATA
Found at i:21177548 original size:72 final size:72
Alignment explanation
Indices: 21177411--21177613 Score: 198
Period size: 72 Copynumber: 2.8 Consensus size: 72
21177401 AAAGGTATAA
* * * * * * * *
21177411 AATAACTGATTATTACTGAATAATTGA-CTGTTACCGGATAATTGACTGTTACTGGATATTAGAC
1 AATAACTGAATATTACTGAATAATTGATC-ATTACTGAATAACTGACTGTCACTGAATAATAGAC
21177475 TGTTACTG
65 TGTTACTG
* *
21177483 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGATTGTCGCTGAATGAAT-GAC
1 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGACTGTCACTGAAT-AATAGAC
21177547 TGTTACTG
65 TGTTACTG
* * * * * *
21177555 AATAACTTAATTGTTACTGAAT-ATCTGAT-TTTACTGAATAATTGACTGTTACTGGATAA
1 AATAACTGAA-TATTACTGAATAAT-TGATCATTACTGAATAACTGACTGTCACTGAATAA
21177614 CCGATCAATT
Statistics
Matches: 109, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
71 2 0.02
72 90 0.83
73 17 0.16
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.37
Consensus pattern (72 bp):
AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGACTGTCACTGAATAATAGACT
GTTACTG
Found at i:21177693 original size:18 final size:18
Alignment explanation
Indices: 21177411--21177693 Score: 169
Period size: 18 Copynumber: 15.3 Consensus size: 18
21177401 AAAGGTATAA
* *
21177411 AATAACTGATTATTACTG
1 AATAACTGACTGTTACTG
* *
21177429 AATAATTGACTGTTACCG
1 AATAACTGACTGTTACTG
* *
21177447 GATAATTGACTGTTACTG
1 AATAACTGACTGTTACTG
* *
21177465 GAT-ATTAGACTGTTACTG
1 AATAACT-GACTGTTACTG
* *
21177483 AATAACTGAATATTACTG
1 AATAACTGACTGTTACTG
* *
21177501 AATAATTGA-TCATTACTG
1 AATAACTGACT-GTTACTG
* **
21177519 AATAACTGATTGTCGCTG
1 AATAACTGACTGTTACTG
21177537 AATGAA-TGACTGTTACTG
1 AAT-AACTGACTGTTACTG
* *
21177555 AATAACTTAATTGTTACTG
1 AATAAC-TGACTGTTACTG
* *
21177574 AATATCTGA-TTTTACTG
1 AATAACTGACTGTTACTG
*
21177591 AATAATTGACTGTTACTG
1 AATAACTGACTGTTACTG
* *
21177609 GATAACCGATCAATTGATCGATACTG
1 AATAACTGA-C---TG-T---TACTG
** * *
21177635 AATAACTGGTTATTATTG
1 AATAACTGACTGTTACTG
* *
21177653 AATAACTGATTGTTACCG
1 AATAACTGACTGTTACTG
*
21177671 GATAACTGACTGTTACTG
1 AATAACTGACTGTTACTG
21177689 AATAA
1 AATAA
21177694 ATAATTGTTC
Statistics
Matches: 206, Mismatches: 43, Indels: 32
0.73 0.15 0.11
Matches are distributed among these distances:
17 20 0.10
18 149 0.72
19 21 0.10
21 1 0.00
22 3 0.01
23 1 0.00
26 11 0.05
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (18 bp):
AATAACTGACTGTTACTG
Found at i:21182588 original size:3 final size:3
Alignment explanation
Indices: 21182580--21182678 Score: 67
Period size: 3 Copynumber: 33.0 Consensus size: 3
21182570 TCCCATTTCT
* * * * * *
21182580 TTA TTA TTA CTA TTA TCA TTA TTA TTTG TTGC TTA ATA -TA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TT-A TTA TTA TTA TTA TTA
* ** * *
21182626 TTA TTA TTT TTA TCC TCA TTA TTA TTA TTA TTA TT- TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
21182673 TTA TTA
1 TTA TTA
21182679 GCATTAGCAT
Statistics
Matches: 74, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
2 4 0.05
3 66 0.89
4 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:21182666 original size:17 final size:17
Alignment explanation
Indices: 21182644--21182677 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
21182634 TTTATCCTCA
*
21182644 TTATTATTATTATTATT
1 TTATTATTACTATTATT
21182661 TTATTATTACTATTATT
1 TTATTATTACTATTATT
21182678 AGCATTAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
TTATTATTACTATTATT
Found at i:21195065 original size:43 final size:43
Alignment explanation
Indices: 21195017--21195215 Score: 138
Period size: 43 Copynumber: 4.6 Consensus size: 43
21195007 TCTTACCTCT
* * * *
21195017 TAAGCAGTAGGGAAACAGATCGAAGATGATGGGCTTAACCCCC
1 TAAGCAGTAGGGTAACAGATCGAAGATGATAGACTTAAACCCC
* * * *
21195060 TAAGCAGTAGGGTAACA-ACCCAA-ATTTACAGACATTAAACCCC
1 TAAGCAGTAGGGTAACAGATCGAAGA-TGATAGAC-TTAAACCCC
* * * *
21195103 TAAGCAGTAGGGTAACAG-GCTGAAGAT-TTCCAGATTCTAACCCCC
1 TAAGCAGTAGGGTAACAGATC-GAAGATGAT--AGACT-TAAACCCC
* * * *
21195148 TAAGCAGTAGGGAAACAGATCAAAGACGA-AGGGTCTTAAACCCC
1 TAAGCAGTAGGGTAACAGATCGAAGATGATA--GACTTAAACCCC
*
21195192 TAAGTAGTAGGGTAACAGATCGAA
1 TAAGCAGTAGGGTAACAGATCGAA
21195216 TTTACAGATC
Statistics
Matches: 119, Mismatches: 25, Indels: 23
0.71 0.15 0.14
Matches are distributed among these distances:
41 1 0.01
42 8 0.07
43 43 0.36
44 32 0.27
45 34 0.29
46 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (43 bp):
TAAGCAGTAGGGTAACAGATCGAAGATGATAGACTTAAACCCC
Found at i:21195165 original size:45 final size:44
Alignment explanation
Indices: 21195051--21195166 Score: 137
Period size: 45 Copynumber: 2.6 Consensus size: 44
21195041 GATGATGGGC
21195051 TTAACCCCCTAAGCAGTAGGGTAACA-ACCCAAATTTACAGACA
1 TTAACCCCCTAAGCAGTAGGGTAACAGACCCAAATTTACAGACA
* * ** * *
21195094 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTCCAGA-T
1 TTAACCCCCTAAGCAGTAGGGTAACAGACCCAA-ATTTACAGACA
*
21195138 TCTAACCCCCTAAGCAGTAGGGAAACAGA
1 T-TAACCCCCTAAGCAGTAGGGTAACAGA
21195167 TCAAAGACGA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
43 25 0.41
44 4 0.07
45 32 0.52
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (44 bp):
TTAACCCCCTAAGCAGTAGGGTAACAGACCCAAATTTACAGACA
Found at i:21195258 original size:87 final size:89
Alignment explanation
Indices: 21195094--21195301 Score: 228
Period size: 87 Copynumber: 2.4 Consensus size: 89
21195084 TTTACAGACA
* *
21195094 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTCCAGATTCTAACCCCCTAAGCAGTAGG
1 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATTCTAACCCCCTAAGCAGTAAG
21195159 GAAACAGATCAAAGACGAAGGGTC
66 GAAACAGATCAAAGACGAAGGGTC
* * * *
21195183 TTAAACCCCTAAGTAGTAGGGTAACA-GATCG-A-ATTTACAGA-TCTTATCTCCCTAAGCAGTA
1 TTAAACCCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATTC-TAACCCCCTAAGCAGTA
* * *** *
21195244 ATGAAGCAGATCAAAGACGATTAGCC
64 AGGAAACAGATCAAAGACGAAGGGTC
* * *
21195270 TT-GACCCTTAAGCAGTAAGGTAACAGGCTGAA
1 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAA
21195302 TCACCAATCT
Statistics
Matches: 98, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
86 22 0.22
87 47 0.48
88 3 0.03
89 26 0.27
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (89 bp):
TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATTCTAACCCCCTAAGCAGTAAG
GAAACAGATCAAAGACGAAGGGTC
Found at i:21195392 original size:68 final size:69
Alignment explanation
Indices: 21195311--21195445 Score: 182
Period size: 69 Copynumber: 2.0 Consensus size: 69
21195301 ATCACCAATC
* * * **
21195311 TCTTCTCCCTGAAATGGTATTGGAGCGGCT-AAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCG
1 TCTTCTCCCTGAAATAGCATTGGAACAACTAAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCG
21195375 GATT
66 GATT
* * * *
21195379 TCTTCTTCCTGAAATAGCATTGGAACAACTAAAAAGTCACAGTAGATTTCCTTGAAGTTTCAGCG
1 TCTTCTCCCTGAAATAGCATTGGAACAACTAAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCG
21195444 GA
66 GA
21195446 AGAAGGTCAA
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
68 24 0.42
69 33 0.58
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (69 bp):
TCTTCTCCCTGAAATAGCATTGGAACAACTAAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGCG
GATT
Found at i:21195507 original size:44 final size:44
Alignment explanation
Indices: 21195457--21195902 Score: 263
Period size: 44 Copynumber: 9.8 Consensus size: 44
21195447 GAAGGTCAAA
*
21195457 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGGAGTT
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
* * * *
21195501 ACAAACCTTATCTCCCTGAAGTTACAGTGGAGCAAGTTGGAGTA
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
** * * * * * *
21195545 ACAAGTCTTATCTCCCTGAAGTTACAGTGGAGTAAGCTAAAGAT
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
* * * * *
21195589 AGCAAATCTAATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAT
1 A-CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-T-T
* ** * * * *
21195636 GAATAAACAGATCTTATCTATCTGAAGTTGCAGTAGAGCA-GATCAA--A
1 --ACAAAC----CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
*
21195683 ACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTT
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
* * * * ** *
21195727 ACAAGCTTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGAT
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
* * *
21195771 AGCAAGTCCTGT-T-TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAT
1 A-CAA-ACCT-TATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-T-T
* * ** * *
21195818 GAATAAACAGATCTTATCTCCCTGAAGTTGCAGTGGGGCAGACTAAAGAT
1 --ACAAAC----CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
* * *
21195868 AGCAAATCTTATTTCCCTGAAGTTGCAATGGAGCA
1 A-CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCA
21195903 CATTGAAGAT
Statistics
Matches: 307, Mismatches: 69, Indels: 51
0.72 0.16 0.12
Matches are distributed among these distances:
41 24 0.08
42 4 0.01
44 115 0.37
45 90 0.29
46 3 0.01
47 4 0.01
48 6 0.02
49 5 0.02
50 2 0.01
51 6 0.02
52 48 0.16
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (44 bp):
ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
Found at i:21195773 original size:182 final size:185
Alignment explanation
Indices: 21195463--21195910 Score: 586
Period size: 182 Copynumber: 2.4 Consensus size: 185
21195453 CAAAACAAAC
* * ** ** * * *
21195463 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGGAGTTACAAACCTTATCTCCCTGAAGTTACAG
1 CTTATCTACCTGAAGTTGCAGTAGAGCAGACTAAAGATACAAACCTTATCTCCCTGAAGTTGCAA
* *
21195528 TGGAGCAAGTTGGAGTAACAAGTCTTATCTCCCTGAAGTTACAGTGGAGTAAGCTAAAGATAGCA
66 TGGAGCAAGTTGAAGTAACAAGTCTTATCTCCCTGAAGTTACAGTAGAGTAAGCTAAAGATAGCA
21195593 AAT-CTAATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGAT
131 AATCCT-ATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGAT
* *
21195648 CTTATCTATCTGAAGTTGCAGTAGAGCAGA-TCAA-A-ACAAACCTTATCTCCCTGAAGTTGCAA
1 CTTATCTACCTGAAGTTGCAGTAGAGCAGACTAAAGATACAAACCTTATCTCCCTGAAGTTGCAA
* * * *
21195710 TGGAGCAGGTTGAAGTTACAAG-CTTTATCTCCCTGAAGTTGCAGTAGAGT-AGACTGAAGATAG
66 TGGAGCAAGTTGAAGTAACAAGTC-TTATCTCCCTGAAGTTACAGTAGAGTAAG-CTAAAGATAG
* *
21195773 CAAGTCCTGTTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGAT
129 CAAATCCTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGAT
* * * * *
21195830 CTTATCTCCCTGAAGTTGCAGTGGGGCAGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTACCTGAAGTTGCAGTAGAGCAGACTAAAGATA-CAAACCTTATCTCCCTGAAGTTGCA
21195895 ATGGAGCACA-TTGAAG
65 ATGGAGCA-AGTTGAAG
21195911 ATGCCTGGAG
Statistics
Matches: 230, Mismatches: 25, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
181 3 0.01
182 155 0.67
183 5 0.02
184 3 0.01
185 27 0.12
186 37 0.16
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (185 bp):
CTTATCTACCTGAAGTTGCAGTAGAGCAGACTAAAGATACAAACCTTATCTCCCTGAAGTTGCAA
TGGAGCAAGTTGAAGTAACAAGTCTTATCTCCCTGAAGTTACAGTAGAGTAAGCTAAAGATAGCA
AATCCTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGAT
Found at i:21195813 original size:45 final size:45
Alignment explanation
Indices: 21195695--21195912 Score: 161
Period size: 45 Copynumber: 4.7 Consensus size: 45
21195685 AAACCTTATC
* * * * *
21195695 TCCCTGAAGTTGCAATGGAGCAGGTTGAAGTTA-CAAG-CTTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTC-CTATT
* * * *
21195739 TCCCTGAAGTTGCAGTAGAGTAGACTGAAGATAGCAAGTCCTGTT
1 TCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCCTATT
* ** * *
21195784 TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGATCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A-GCA-AG-TCCTATT
* * * * *
21195836 TCCCTGAAGTTGCAGTGGGGCAGACTAAAGATAGCAAATCTTATT
1 TCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCCTATT
* *
21195881 TCCCTGAAGTTGCAATGGAGCACATTGAAGAT
1 TCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT
21195913 GCCTGGAGAA
Statistics
Matches: 134, Mismatches: 31, Indels: 17
0.74 0.17 0.09
Matches are distributed among these distances:
44 27 0.20
45 65 0.49
46 2 0.01
47 3 0.02
48 1 0.01
49 1 0.01
50 3 0.02
51 2 0.01
52 30 0.22
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (45 bp):
TCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCCTATT
Found at i:21195908 original size:97 final size:97
Alignment explanation
Indices: 21195734--21195910 Score: 264
Period size: 97 Copynumber: 1.8 Consensus size: 97
21195724 GTTACAAGCT
* * * * *
21195734 TTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGATAGCAAGTCCTGTTTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGATAGCAAATCCTATTTCCCTGAAGTTGCAA
*
21195799 TGGAACAGATTGAAGCTATGAATAAACAGATC
66 TGGAACACATTGAAGCTATGAATAAACAGATC
* * *
21195831 TTATCTCCCTGAAGTTGCAGTGGGGCAGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAA
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGATAGCAAATCCTATTTCCCTGAAGTTGCAA
*
21195896 TGGAGCACATTGAAG
66 TGGAACACATTGAAG
21195911 ATGCCTGGAG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
97 70 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (97 bp):
TTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAAGATAGCAAATCCTATTTCCCTGAAGTTGCAA
TGGAACACATTGAAGCTATGAATAAACAGATC
Found at i:21197178 original size:3 final size:3
Alignment explanation
Indices: 21197172--21197259 Score: 81
Period size: 3 Copynumber: 30.0 Consensus size: 3
21197162 TTGCTTAATA
* * ** *
21197172 TAT TAT TGT TAT TAT TTT TAT CCT CAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
21197220 TAT T-T TAT TAT TAC TAT TAT TAG CAT TAG TAT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
21197260 CAATACTATA
Statistics
Matches: 67, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
2 4 0.06
3 63 0.94
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:21198621 original size:26 final size:26
Alignment explanation
Indices: 21198591--21198643 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21198581 AAAACTCCGT
** *
21198591 AGATTGAGTCAAATTTTAAATTTTAA
1 AGATTGAAACAAATTTTAAACTTTAA
21198617 AGATTGAAACAAATTTTAAACTTTAA
1 AGATTGAAACAAATTTTAAACTTTAA
21198643 A
1 A
21198644 TTTGGAGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (26 bp):
AGATTGAAACAAATTTTAAACTTTAA
Found at i:21199254 original size:15 final size:15
Alignment explanation
Indices: 21199234--21199264 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
21199224 TGTTTAATCA
*
21199234 ATTATAGGTTCTATC
1 ATTATAGATTCTATC
21199249 ATTATAGATTCTATC
1 ATTATAGATTCTATC
21199264 A
1 A
21199265 GAAATCATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (15 bp):
ATTATAGATTCTATC
Found at i:21202943 original size:24 final size:24
Alignment explanation
Indices: 21202855--21202980 Score: 100
Period size: 24 Copynumber: 5.3 Consensus size: 24
21202845 TAACTCGTAT
* *
21202855 GAGCTTACTG-TTTTAGCTCATTG
1 GAGCTTACTGTTTTTAGCTCAATA
* * *
21202878 GAGCTTATTG-ATTCAGCTCGAA-A
1 GAGCTTACTGTTTTTAGCTC-AATA
* *
21202901 GACCTTA-T-TATTTAGCTCAATA
1 GAGCTTACTGTTTTTAGCTCAATA
*
21202923 GAGCTTACTGTTTTTATCTCAATA
1 GAGCTTACTGTTTTTAGCTCAATA
* *
21202947 GAGCTTACTGTTTATCAGCTCAGTAA
1 GAGCTTACTGTTT-TTAGCTCAAT-A
21202973 GAGCTTAC
1 GAGCTTAC
21202981 CGACCATGAC
Statistics
Matches: 83, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
21 2 0.02
22 16 0.19
23 23 0.28
24 26 0.31
25 7 0.08
26 9 0.11
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.38
Consensus pattern (24 bp):
GAGCTTACTGTTTTTAGCTCAATA
Found at i:21213503 original size:20 final size:21
Alignment explanation
Indices: 21213478--21213534 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 21
21213468 GCTGATAGAA
21213478 CAGTCACCT-AAGTTTCATTT
1 CAGTCACCTCAAGTTTCATTT
*
21213498 CAGTCA-CTCAGGTTTCATTT
1 CAGTCACCTCAAGTTTCATTT
*
21213518 CAGTCA-CTCAACTTTCA
1 CAGTCACCTCAAGTTTCA
21213535 AAAAGTTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.37
Consensus pattern (21 bp):
CAGTCACCTCAAGTTTCATTT
Found at i:21213647 original size:21 final size:21
Alignment explanation
Indices: 21213621--21213661 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
21213611 TAACAGAACC
21213621 GCTGATGTGGCAAGTTAACTA
1 GCTGATGTGGCAAGTTAACTA
*
21213642 GCTGATGTGGCCAGTTAACT
1 GCTGATGTGGCAAGTTAACT
21213662 TGCCACATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (21 bp):
GCTGATGTGGCAAGTTAACTA
Found at i:21215008 original size:21 final size:21
Alignment explanation
Indices: 21214982--21215022 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
21214972 CAACCTGGCA
*
21214982 AGTTAACTGGCCACGTCAGCT
1 AGTTAACTGGCCACATCAGCT
*
21215003 AGTTAACTTGCCACATCAGC
1 AGTTAACTGGCCACATCAGC
21215023 GGTTCTGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (21 bp):
AGTTAACTGGCCACATCAGCT
Found at i:21215122 original size:30 final size:31
Alignment explanation
Indices: 21215065--21215125 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
21215055 TCAGTCACTC
* *
21215065 TTTTGTCACTTTTTTGTAACGTTAGTGACTG
1 TTTTGTAACTTTTTTGTAAAGTTAGTGACTG
21215096 TTTTGTAAC-TTTTTG-AAAGTTGAGTGACTG
1 TTTTGTAACTTTTTTGTAAAGTT-AGTGACTG
21215126 AAATGAAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 5 0.19
30 14 0.52
31 8 0.30
ACGTcount: A:0.20, C:0.10, G:0.21, T:0.49
Consensus pattern (31 bp):
TTTTGTAACTTTTTTGTAAAGTTAGTGACTG
Found at i:21215139 original size:20 final size:20
Alignment explanation
Indices: 21215116--21215164 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
21215106 TTTTGAAAGT
21215116 TGAGTGACTGAAATGAAACC
1 TGAGTGACTGAAATGAAACC
*
21215136 TGAGTGACTGAAATGAAACT
1 TGAGTGACTGAAATGAAACC
*
21215156 TAAGTGACT
1 TGAGTGACT
21215165 ATTTTATCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (20 bp):
TGAGTGACTGAAATGAAACC
Found at i:21217566 original size:29 final size:30
Alignment explanation
Indices: 21217516--21217573 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
21217506 ATGGTACATG
* * *
21217516 TATATTTATAAAAATGTTTAATGTGGTACC
1 TATATTTATAAAAATATCTAATGTAGTACC
*
21217546 TATATTT-TGAAAATATCTAATGTAGTAC
1 TATATTTATAAAAATATCTAATGTAGTAC
21217574 TAAATTATCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (30 bp):
TATATTTATAAAAATATCTAATGTAGTACC
Found at i:21221144 original size:31 final size:31
Alignment explanation
Indices: 21221109--21221167 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
21221099 ATTCATCTCG
21221109 AATAACTTAAAATG-CTTATTTAAATTGACTT
1 AATAAC-TAAAATGACTTATTTAAATTGACTT
* *
21221140 AATAACTCAAATGACTTATTTAACTTGA
1 AATAACTAAAATGACTTATTTAAATTGA
21221168 ATCACCTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.24
31 19 0.76
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (31 bp):
AATAACTAAAATGACTTATTTAAATTGACTT
Found at i:21222816 original size:6 final size:6
Alignment explanation
Indices: 21222807--21222834 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
21222797 ATTTAGGCTC
21222807 GATTTG GATTTG GATTTG GATTTG GATT
1 GATTTG GATTTG GATTTG GATTTG GATT
21222835 CAGATTCGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (6 bp):
GATTTG
Found at i:21222840 original size:18 final size:18
Alignment explanation
Indices: 21222807--21222846 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
21222797 ATTTAGGCTC
** *
21222807 GATTTGGATTTGGATTTG
1 GATTTGGATTCAGATTCG
21222825 GATTTGGATTCAGATTCG
1 GATTTGGATTCAGATTCG
21222843 GATT
1 GATT
21222847 CTGCAAGTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.20, C:0.05, G:0.30, T:0.45
Consensus pattern (18 bp):
GATTTGGATTCAGATTCG
Found at i:21230104 original size:34 final size:34
Alignment explanation
Indices: 21230061--21230128 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
21230051 TAGTCTTACT
21230061 AGAATATGGCTTTACAAGCCTATAAATAAACATA
1 AGAATATGGCTTTACAAGCCTATAAATAAACATA
*
21230095 AGAATATGGCTTTACAAGCCTATAAATAGACATA
1 AGAATATGGCTTTACAAGCCTATAAATAAACATA
21230129 GTCTATTCCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (34 bp):
AGAATATGGCTTTACAAGCCTATAAATAAACATA
Found at i:21234134 original size:25 final size:24
Alignment explanation
Indices: 21234088--21234145 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 24
21234078 TAAAACCTAG
21234088 TTAAAT-AAAAAATTATAATAATA
1 TTAAATAAAAAAATTATAATAATA
* *
21234111 TTAAATAAAAATAATTATATTAATG
1 TTAAATAAAAA-AATTATAATAATA
21234136 TTAAATAAAA
1 TTAAATAAAA
21234146 TAAAAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 6 0.19
24 4 0.13
25 21 0.68
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (24 bp):
TTAAATAAAAAAATTATAATAATA
Found at i:21234155 original size:25 final size:26
Alignment explanation
Indices: 21234090--21234155 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 26
21234080 AAACCTAGTT
21234090 AAATAAAAAATTATAATAATATTAAAT-
1 AAATAAAAAA-TAT-ATAATATTAAATA
* * *
21234117 AAA-AATAATTATATTAATGTTAAATA
1 AAATAAAAAATATA-TAATATTAAATA
21234143 AAATAAAAAATAT
1 AAATAAAAAATAT
21234156 CCCTCCCCTC
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
24 1 0.03
25 13 0.42
26 7 0.23
27 10 0.32
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (26 bp):
AAATAAAAAATATATAATATTAAATA
Found at i:21234513 original size:23 final size:24
Alignment explanation
Indices: 21234487--21234540 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
21234477 AAATTTTCAA
21234487 TAAAAAAATAAAAAATAAA-ATAT
1 TAAAAAAATAAAAAATAAATATAT
* * * *
21234510 TAAAATAATATAATATAAATATTT
1 TAAAAAAATAAAAAATAAATATAT
21234534 TAAAAAA
1 TAAAAAA
21234541 TAATATGGAC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 16 0.64
24 9 0.36
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (24 bp):
TAAAAAAATAAAAAATAAATATAT
Found at i:21238914 original size:28 final size:27
Alignment explanation
Indices: 21238850--21238914 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
21238840 ACACAAATTG
* * *
21238850 AAAATATAATAAAAAGTGATTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
* *
21238877 AAATTGAAAATAAAATGTAAATATGATTA
1 AAAAT-AAAATAAAAAGTAAATAT-ATTA
21238906 AAAATAAAA
1 AAAATAAAA
21238915 AATATATATA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 4 0.13
28 18 0.60
29 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:21240109 original size:16 final size:16
Alignment explanation
Indices: 21240088--21240120 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
21240078 AAGTCATTGA
21240088 TTGTGCAAGATTGCTT
1 TTGTGCAAGATTGCTT
21240104 TTGTGCAAGATTGCTT
1 TTGTGCAAGATTGCTT
21240120 T
1 T
21240121 ATTGTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.24, T:0.45
Consensus pattern (16 bp):
TTGTGCAAGATTGCTT
Found at i:21241940 original size:33 final size:33
Alignment explanation
Indices: 21241871--21241968 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
21241861 CTATACCCAT
* * *
21241871 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
21241908 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
21241941 CTATGCCGAATGCA-ACATATATATATAT
1 CTATGCCGAATGCATACACATAAATATAT
21241969 ACATATCTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 22 0.39
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:21242367 original size:41 final size:41
Alignment explanation
Indices: 21242183--21242379 Score: 299
Period size: 41 Copynumber: 4.8 Consensus size: 41
21242173 ACCGGCTCTT
*
21242183 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
21242224 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
21242265 AGCCTGCTAGACTTATAGCCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
21242306 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCGTTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
21242347 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
21242380 TAACGATAAA
Statistics
Matches: 145, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 136 0.94
42 2 0.01
43 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:21249616 original size:33 final size:33
Alignment explanation
Indices: 21249547--21249644 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
21249537 CTATACCCAT
* * *
21249547 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
21249584 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
21249617 CTATGCCGAATGCA-ACATATATATATAT
1 CTATGCCGAATGCATACACATAAATATAT
21249645 ACATATCTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 22 0.39
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:21253287 original size:229 final size:229
Alignment explanation
Indices: 21252886--21253345 Score: 875
Period size: 229 Copynumber: 2.0 Consensus size: 229
21252876 TCGATTGCGC
21252886 ACACGGCTTAAAACACGGGCGTGTGACCCCTGTACATAAGAAAAATTTTGAAATTTCACAAAAAA
1 ACACGGCTTAAAACACGGGCGTGTGACCCCTGTACATAAGAAAAATTTTGAAATTTCACAAAAAA
*
21252951 TCCCCTGAGTTTCCGATATAGTCCCGACCTGTTTCTAGTACTTAAATGGGGCCTCGAGGGTCCAT
66 TCCCCTGAGTTTCCGATATAGTCCCAACCTGTTTCTAGTACTTAAATGGGGCCTCGAGGGTCCAT
21253016 ATAAGGGACAATACGATTAAATATGATTGGTTTCGAATATGAATAATAAATGACATGAATTAACT
131 ATAAGGGACAATACGATTAAATATGATTGGTTTCGAATATGAATAATAAATGACATGAATTAACT
21253081 GTAATTGTTCTGTAAATTCTAGTAATGCTCTGTA
196 GTAATTGTTCTGTAAATTCTAGTAATGCTCTGTA
*
21253115 ACACGGCTTAAGACACGGGCGTGTGACCCCTGTACATAAGAAAAATTTTGAAATTTCACAAAAAA
1 ACACGGCTTAAAACACGGGCGTGTGACCCCTGTACATAAGAAAAATTTTGAAATTTCACAAAAAA
* *
21253180 TTCTCTGAGTTTCCGATATAGTCCCAACCTGTTTCTAGTACTTAAATGGGGCCTCGAGGGTCCAT
66 TCCCCTGAGTTTCCGATATAGTCCCAACCTGTTTCTAGTACTTAAATGGGGCCTCGAGGGTCCAT
21253245 ATAAGGGACAATACGATTAAATATGATTGGTTTCGAATATGAATAATAAATGACATGAATTAACT
131 ATAAGGGACAATACGATTAAATATGATTGGTTTCGAATATGAATAATAAATGACATGAATTAACT
*
21253310 GTAATTGTTTTGTAAATTCTAGTAATGCTCTGTA
196 GTAATTGTTCTGTAAATTCTAGTAATGCTCTGTA
21253344 AC
1 AC
21253346 TCGGTTCCGA
Statistics
Matches: 226, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
229 226 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (229 bp):
ACACGGCTTAAAACACGGGCGTGTGACCCCTGTACATAAGAAAAATTTTGAAATTTCACAAAAAA
TCCCCTGAGTTTCCGATATAGTCCCAACCTGTTTCTAGTACTTAAATGGGGCCTCGAGGGTCCAT
ATAAGGGACAATACGATTAAATATGATTGGTTTCGAATATGAATAATAAATGACATGAATTAACT
GTAATTGTTCTGTAAATTCTAGTAATGCTCTGTA
Found at i:21257201 original size:45 final size:45
Alignment explanation
Indices: 21257137--21257243 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 45
21257127 ATAGCAGTAG
* * * * *
21257137 CAGTAACAGTAACATTATTCAACATACAAAGTG-CTGAATCTGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTC-GAATATGGAA
*
21257182 CAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATATGGAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATATGGAA
* *
21257227 CAATAACGGTAATAGTA
1 CAGTAACGGTAACAGTA
21257244 ACAGTAGTCG
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 52 0.98
46 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (45 bp):
CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATATGGAA
Found at i:21258644 original size:20 final size:20
Alignment explanation
Indices: 21258621--21258675 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 20
21258611 TTATTTTTAA
21258621 TAATAATAATAATCATAATT
1 TAATAATAATAATCATAATT
*
21258641 TAATAAT-ATAAATTATAATT
1 TAATAATAAT-AATCATAATT
21258661 TAATAGAATAATAAT
1 TAAT--AATAATAAT
21258676 AAATAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.07
20 20 0.67
22 6 0.20
23 2 0.07
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TAATAATAATAATCATAATT
Found at i:21258733 original size:39 final size:38
Alignment explanation
Indices: 21258625--21258736 Score: 108
Period size: 39 Copynumber: 3.0 Consensus size: 38
21258615 TTTTAATAAT
* *
21258625 AATAATAATCATAATTTAATAATATAAATTATA-AT-TT-
1 AATAAAAATAATAA-TTAATAAT-TAAATTATATATATTA
* * *
21258662 AAT-AGAATAATAATAAATAA-TAAATATCTATATACTTA
1 AATAAAAATAATAATTAATAATTAAAT-TATATATA-TTA
21258700 AATAAAAATAATAATTAATAATTAAATTATATATATT
1 AATAAAAATAATAATTAATAATTAAATTATATATATT
21258737 TACATAATTA
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
33 5 0.08
34 3 0.05
35 8 0.13
36 8 0.13
37 5 0.08
38 5 0.08
39 22 0.36
40 5 0.08
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (38 bp):
AATAAAAATAATAATTAATAATTAAATTATATATATTA
Found at i:21258749 original size:43 final size:39
Alignment explanation
Indices: 21258667--21258749 Score: 94
Period size: 39 Copynumber: 2.0 Consensus size: 39
21258657 AATTTAATAG
* *
21258667 AATAATAATAAATAATAAATATCTATATACTTAAATAAA
1 AATAATAATAAATAATAAATATATATATACATAAATAAA
* *
21258706 AATAATAATTAATAATTAAATTATATATATTTACATAATTAAA
1 AATAATAATAAATAA-TAAA-TATATATA--TACATAAATAAA
21258749 A
1 A
21258750 TCTAAAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
39 14 0.39
40 4 0.11
41 7 0.19
43 11 0.31
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (39 bp):
AATAATAATAAATAATAAATATATATATACATAAATAAA
Found at i:21271591 original size:25 final size:25
Alignment explanation
Indices: 21271546--21271593 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
21271536 ATGTTTATAC
*
21271546 AACTAACATTAAAGATGTTATAAAA
1 AACTAACATTAAAAATGTTATAAAA
21271571 AACTAACATTAAAAAAT-TTATAA
1 AACTAACATT-AAAAATGTTATAA
21271594 GATATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.29
Consensus pattern (25 bp):
AACTAACATTAAAAATGTTATAAAA
Found at i:21277828 original size:18 final size:17
Alignment explanation
Indices: 21277796--21277829 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
21277786 CTAGGATTAG
*
21277796 AATTTGATTTTGATTTT
1 AATTTGATTTCGATTTT
21277813 AATTTAGATTTCGATTT
1 AATTT-GATTTCGATTT
21277830 AGGGTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.26, C:0.03, G:0.12, T:0.59
Consensus pattern (17 bp):
AATTTGATTTCGATTTT
Found at i:21278050 original size:16 final size:16
Alignment explanation
Indices: 21278013--21278043 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21278003 AACTGGTCTT
21278013 TATTGTGTGTATCTGC
1 TATTGTGTGTATCTGC
*
21278029 TATTGTTTGTATCTG
1 TATTGTGTGTATCTG
21278044 TCATTGTATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.10, G:0.23, T:0.55
Consensus pattern (16 bp):
TATTGTGTGTATCTGC
Found at i:21278220 original size:62 final size:64
Alignment explanation
Indices: 21277968--21278355 Score: 491
Period size: 62 Copynumber: 6.2 Consensus size: 64
21277958 GATTTTGATG
** * * * * *
21277968 TGTTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGGTCTTTATTGTGTGTATCTGCTAT
1 TGTTTGTATCTGCCATTAAATGAATGACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
* ** * *
21278032 TGTTTGTATCTGTCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTAAATGAATGACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
* * ** * *
21278096 TGCTTGTATCTGTCATTGTATGAATGTCATTATCAAATTGATGTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTAAATGAATGACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
* *
21278160 TGTTTGTATCTGCCATTAAAT-TAT-ACATTATTAAACTGATGTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTAAATGAATGACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
* * *
21278222 TGTTTGTATCTGCCATTAAAT-TAT-ACATTATTAAACTGATGTTTATTGTGTATATCTTCCAT
1 TGTTTGTATCTGCCATTAAATGAATGACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
* * * *
21278284 TGTTTGTATTTGCCATTAAAT-TAT-ACATTATTAAACTGATGTTTATTGTGTATATCTGTCAT
1 TGTTTGTATCTGCCATTAAATGAATGACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
21278346 TGTTTGTATC
1 TGTTTGTATC
21278356 CAGGCTCCTA
Statistics
Matches: 303, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
62 164 0.54
63 2 0.01
64 137 0.45
ACGTcount: A:0.24, C:0.13, G:0.15, T:0.47
Consensus pattern (64 bp):
TGTTTGTATCTGCCATTAAATGAATGACATTATCAAACTGATGTTTATTGTGTATATCTGCCAT
Found at i:21280434 original size:43 final size:43
Alignment explanation
Indices: 21280299--21280477 Score: 249
Period size: 44 Copynumber: 4.2 Consensus size: 43
21280289 TTGCTGATCA
* * *
21280299 CATGCAGTGATTGTTGGAAAGCTATTGAAT-TTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
* * *
21280341 TATGCAATGATTATTGGAAAGTTGTTGACTATTTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTA-TTTTTTAATATG
21280385 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
* *
21280428 CATGCAATGATTGTTGG--TG-TGTTGCCTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
21280468 CATGCAATGA
1 CATGCAATGA
21280478 GTTATTTCTA
Statistics
Matches: 124, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
40 30 0.24
41 1 0.01
42 24 0.19
43 29 0.23
44 40 0.32
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (43 bp):
CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
Found at i:21281189 original size:21 final size:21
Alignment explanation
Indices: 21281144--21281189 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
21281134 CTGAACCCAG
* *
21281144 CAAGAGGCTACCCCAAGTCAG
1 CAAGAGGCTACCCCAACTCAA
* *
21281165 CAAGAGGGTACCTCAACTCAA
1 CAAGAGGCTACCCCAACTCAA
21281186 CAAG
1 CAAG
21281190 GTGCCCCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.30, G:0.22, T:0.11
Consensus pattern (21 bp):
CAAGAGGCTACCCCAACTCAA
Found at i:21281711 original size:56 final size:56
Alignment explanation
Indices: 21281618--21281729 Score: 172
Period size: 56 Copynumber: 2.0 Consensus size: 56
21281608 TTATCATGCT
* * *
21281618 ATTTGTTATCCAACTGTTATCTTTTCTAACTAGCAGCCATGTATACCAACTGTTAA
1 ATTTGTTATCCAACTGTTATCTTTTCTAACCAACAGCCATGTATACCAAATGTTAA
*
21281674 ATTTGTATAT-CAATTGTTATCTTTTCTAACCAACAGCCATGTATACCAAATGTTAA
1 ATTTGT-TATCCAACTGTTATCTTTTCTAACCAACAGCCATGTATACCAAATGTTAA
21281730 GCAATTTGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
56 48 0.94
57 3 0.06
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.39
Consensus pattern (56 bp):
ATTTGTTATCCAACTGTTATCTTTTCTAACCAACAGCCATGTATACCAAATGTTAA
Found at i:21281818 original size:28 final size:30
Alignment explanation
Indices: 21281786--21281844 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
21281776 AGCCATTTTT
21281786 AACAC-ATGT-TAAGCAACAAAAATATTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
* * *
21281814 AACACAATTTGTAATCAACAAAAATTTTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
21281844 A
1 A
21281845 TTTCATTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 5 0.19
29 3 0.12
30 18 0.69
ACGTcount: A:0.49, C:0.20, G:0.05, T:0.25
Consensus pattern (30 bp):
AACACAATGTGTAAGCAACAAAAATATTCC
Found at i:21282315 original size:3 final size:3
Alignment explanation
Indices: 21282289--21282337 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
21282279 CTATTTTTCC
* *
21282289 TCT TCT CCT TCT TTT TCT TC- TCT TCT TGCT TC- TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T-CT TCT TCT TCT TCT TCT
21282333 TCT TC
1 TCT TC
21282338 CTTTTTTCCA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 32 0.82
4 3 0.08
ACGTcount: A:0.00, C:0.35, G:0.02, T:0.63
Consensus pattern (3 bp):
TCT
Found at i:21289537 original size:27 final size:27
Alignment explanation
Indices: 21289513--21289578 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
21289503 AATCCTCCGT
*
21289513 AACACACCAGTATAATATAGCCTCCCA
1 AACACACCAATATAATATAGCCTCCCA
* *
21289540 AACACACCAATATATTATATCCTCCCA
1 AACACACCAATATAATATAGCCTCCCA
21289567 AACACACCAATA
1 AACACACCAATA
21289579 AGGCATTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.44, C:0.33, G:0.03, T:0.20
Consensus pattern (27 bp):
AACACACCAATATAATATAGCCTCCCA
Found at i:21290594 original size:14 final size:13
Alignment explanation
Indices: 21290567--21290614 Score: 60
Period size: 14 Copynumber: 3.5 Consensus size: 13
21290557 TTTACTTTCG
21290567 TTTTATTCTATTTA
1 TTTTATT-TATTTA
21290581 CTTTTATTTATTTA
1 -TTTTATTTATTTA
*
21290595 TTTTATTTTATTTG
1 TTTTA-TTTATTTA
21290609 TTTTAT
1 TTTTAT
21290615 ATTAATAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 6 0.19
14 18 0.58
15 7 0.23
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (13 bp):
TTTTATTTATTTA
Found at i:21290625 original size:28 final size:28
Alignment explanation
Indices: 21290567--21290651 Score: 73
Period size: 28 Copynumber: 3.0 Consensus size: 28
21290557 TTTACTTTCG
* *
21290567 TTTTATTCTATTTACTTTTATTTATTTA
1 TTTTATTCTATTTACTTTTATTTAATAA
* *
21290595 TTTTATTTTATTT-GTTTTATATTAATAA
1 TTTTATTCTATTTACTTTTAT-TTAATAA
* * *
21290623 TTTAATTCTAATTATCTATTACTTTAATA
1 TTTTATTCTATTTA-CTTTTA-TTTAATA
21290652 TTAAGTAAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
27 6 0.14
28 27 0.61
30 10 0.23
31 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (28 bp):
TTTTATTCTATTTACTTTTATTTAATAA
Found at i:21291092 original size:15 final size:14
Alignment explanation
Indices: 21291059--21291104 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
21291049 ATAATATCAC
*
21291059 TATAATTTA-ATTA
1 TATAAATTATATTA
21291072 TCATAAATTCATATTA
1 T-ATAAATT-ATATTA
21291088 TATAAATTATATT-
1 TATAAATTATATTA
21291101 TATA
1 TATA
21291105 TCTCATTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
13 5 0.17
14 11 0.38
15 8 0.28
16 5 0.17
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (14 bp):
TATAAATTATATTA
Found at i:21291105 original size:15 final size:15
Alignment explanation
Indices: 21291068--21291104 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
21291058 CTATAATTTA
21291068 ATTATCATAAATTCAT
1 ATTAT-ATAAATTCAT
21291084 ATTATATAAATT-AT
1 ATTATATAAATTCAT
21291098 ATT-TATA
1 ATTATATA
21291105 TCTCATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.19
14 5 0.24
15 7 0.33
16 5 0.24
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTATATAAATTCAT
Found at i:21302647 original size:16 final size:16
Alignment explanation
Indices: 21302626--21302656 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
21302616 CTTTTTTCGT
21302626 TTTCATTTTCCTTCTC
1 TTTCATTTTCCTTCTC
21302642 TTTCATTTTCCTTCT
1 TTTCATTTTCCTTCT
21302657 ATCTTAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTCATTTTCCTTCTC
Found at i:21310587 original size:30 final size:30
Alignment explanation
Indices: 21310547--21310611 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
21310537 AAAACAATTC
* * *
21310547 TAATTGTTTGGGGA-TGAAAAATCAATGAAA
1 TAATTATTTGGGAATTG-AAAATCAATCAAA
*
21310577 TAATTATTTGGTAATTGAAAATCAATCAAA
1 TAATTATTTGGGAATTGAAAATCAATCAAA
21310607 TAATT
1 TAATT
21310612 TTAAACTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (30 bp):
TAATTATTTGGGAATTGAAAATCAATCAAA
Found at i:21310828 original size:19 final size:19
Alignment explanation
Indices: 21310806--21310854 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 19
21310796 TGTCCTATAG
21310806 AAGAATAATA-AATTATTAA
1 AAGAATAATATAATT-TTAA
21310825 AAG-AT-ATATAATTTTAA
1 AAGAATAATATAATTTTAA
*
21310842 AAAAATATATATA
1 AAGAATA-ATATA
21310855 TATATCAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 9 0.36
18 8 0.32
19 3 0.12
20 5 0.20
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
AAGAATAATATAATTTTAA
Found at i:21321495 original size:22 final size:21
Alignment explanation
Indices: 21321437--21321496 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
21321427 TACACGGCCT
* * *
21321437 ATTCACACGGGCGTGTGCTTCT
1 ATTCACAC-GGCGTTTGCTACC
21321459 A-TCACACGGCTGTTTGCTACC
1 ATTCACACGGC-GTTTGCTACC
21321480 ATTCACACAGGCGTTTG
1 ATTCACAC-GGCGTTTG
21321497 GACCCTCACA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
20 3 0.09
21 14 0.44
22 12 0.38
23 3 0.09
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.30
Consensus pattern (21 bp):
ATTCACACGGCGTTTGCTACC
Found at i:21323689 original size:61 final size:61
Alignment explanation
Indices: 21323576--21323692 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
21323566 AGAGAATTTG
* ** *
21323576 TAAATGTGAAGGGTTAAATTTATTGAATTATTAAGAATTAGGAGCAAATTGATAGAATTCA
1 TAAATGTGAAGGGTTAAATTTATTAAATTATTAAGAATTAAAACCAAATTGATAGAATTCA
* * * *
21323637 TAAATGTGGAGGGTTAAATTTTTTAAATTATTTAGAATTAAAACCAATTTGATAGA
1 TAAATGTGAAGGGTTAAATTTATTAAATTATTAAGAATTAAAACCAAATTGATAGA
21323693 CTATGTACGT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.37
Consensus pattern (61 bp):
TAAATGTGAAGGGTTAAATTTATTAAATTATTAAGAATTAAAACCAAATTGATAGAATTCA
Found at i:21324268 original size:19 final size:19
Alignment explanation
Indices: 21324246--21324283 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
21324236 AAAAAAATAA
*
21324246 TTAAAATCAAAATCAAAAT
1 TTAAAATAAAAATCAAAAT
*
21324265 TTAAAATAAAAATGAAAAT
1 TTAAAATAAAAATCAAAAT
21324284 GCTCATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (19 bp):
TTAAAATAAAAATCAAAAT
Found at i:21325271 original size:30 final size:29
Alignment explanation
Indices: 21325220--21325276 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
21325210 TATCATATAA
*
21325220 AAATTTTAATTTTATGTAATTTTATATATG
1 AAATTTTAATTTGATGTAATTTT-TATATG
*
21325250 AAATTTTGATTTGAT-TCAATTTTTATA
1 AAATTTTAATTTGATGT-AATTTTTATA
21325277 AATCATTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (29 bp):
AAATTTTAATTTGATGTAATTTTTATATG
Found at i:21327349 original size:10 final size:10
Alignment explanation
Indices: 21327336--21327397 Score: 56
Period size: 10 Copynumber: 6.1 Consensus size: 10
21327326 TAATATTTTT
21327336 AAAATATATA
1 AAAATATATA
21327346 AAAATATATA
1 AAAATATATA
*
21327356 ATATATAATATA
1 A-AAAT-ATATA
*
21327368 TAAATATAT-
1 AAAATATATA
21327377 AAAATA-ACTA
1 AAAATATA-TA
*
21327387 AAAATTTATA
1 AAAATATATA
21327397 A
1 A
21327398 TATGTATAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
8 1 0.02
9 6 0.14
10 23 0.55
11 7 0.17
12 5 0.12
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.34
Consensus pattern (10 bp):
AAAATATATA
Found at i:21327360 original size:7 final size:7
Alignment explanation
Indices: 21327348--21327378 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
21327338 AATATATAAA
21327348 AATATAT
1 AATATAT
21327355 AATATAT
1 AATATAT
21327362 AATATAT
1 AATATAT
21327369 AAATATAT
1 -AATATAT
21327377 AA
1 AA
21327379 AATAACTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
AATATAT
Found at i:21327388 original size:17 final size:16
Alignment explanation
Indices: 21327337--21327388 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
21327327 AATATTTTTA
21327337 AAATATATAAAA-ATAT
1 AAATATATAAAATA-AT
*
21327353 ATAATATATAATAT-AT
1 A-AATATATAAAATAAT
21327369 AAATATATAAAATAACT
1 AAATATATAAAATAA-T
21327386 AAA
1 AAA
21327389 AATTTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 11 0.37
16 5 0.17
17 14 0.47
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATATATAAAATAAT
Found at i:21337758 original size:44 final size:44
Alignment explanation
Indices: 21337665--21337823 Score: 146
Period size: 44 Copynumber: 3.6 Consensus size: 44
21337655 CTGTTCTGCC
* * * *
21337665 TGTAAGACCACGTCTATGACGTTGGCATCGATTTCTATTCTGT-G
1 TGTAAGACCACGTCTAGGACATTGGCATCGATTTCTGTT-TTTCG
* * *
21337709 AGTAAGACCACGTCTATGACATTGGCATCAATTTCTGTTTTTCG
1 TGTAAGACCACGTCTAGGACATTGGCATCGATTTCTGTTTTTCG
* * * * *
21337753 TGTAAGACC-CTGTCTAGGACAGTGACATCGATGTT-TG-ATTACA
1 TGTAAGACCAC-GTCTAGGACATTGGCATCGAT-TTCTGTTTTTCG
*
21337796 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTAGGACATTGGCAT
21337824 TGTATATGCT
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
43 29 0.31
44 64 0.67
45 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (44 bp):
TGTAAGACCACGTCTAGGACATTGGCATCGATTTCTGTTTTTCG
Found at i:21339710 original size:43 final size:44
Alignment explanation
Indices: 21339649--21339839 Score: 198
Period size: 43 Copynumber: 4.4 Consensus size: 44
21339639 GTTATCGAGA
*
21339649 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGA-ATTGTAT
1 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGACATCGTAT
* *
21339692 TGTGATTACATGTAAGACCCTGTGTAGGACAGT-GACATTGTAT
1 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGACATCGTAT
** * * * *
21339735 TACGATTACGTGTAAGACCATGTGTGGGACA-TCGACATCGTTAA
1 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGACATCG-TAT
*
21339779 T-CGACTT-CATGTAAGACCCTGTGTGGGACAGTGG-CATCG-AT
1 TGTGA-TTACATGTAAGACCCTGTGTGGGACAGTGGACATCGTAT
* *
21339820 ATGTGATAACACGTAAGACC
1 -TGTGATTACATGTAAGACC
21339840 ATATCTAGGA
Statistics
Matches: 125, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
41 1 0.01
42 5 0.04
43 112 0.90
44 7 0.06
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (44 bp):
TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGACATCGTAT
Found at i:21348856 original size:66 final size:66
Alignment explanation
Indices: 21348727--21348867 Score: 194
Period size: 66 Copynumber: 2.1 Consensus size: 66
21348717 TTTTTTTTTT
* * * *
21348727 AAAATAATTAAATTAGGTTTTAGGGGTTTTAAATAAATTAATTAAATTAGATTTTGGGGTTTTAA
1 AAAATAATTAAATTAGGATTTAGGGGTTTTAAATAAATAAATTAAATTAGACTTTAGGGTTTTAA
21348792 A
66 A
* * **
21348793 TAAATAGATTAAATTA-GATTTAGGGGTTTTAAATAAATAAATTAAATTAGGCTTTAGTTTTTTA
1 AAAATA-ATTAAATTAGGATTTAGGGGTTTTAAATAAATAAATTAAATTAGACTTTAGGGTTTTA
21348857 AA
65 AA
21348859 AAAATAATT
1 AAAATAATT
21348868 TTTTTGTTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
65 3 0.05
66 53 0.82
67 9 0.14
ACGTcount: A:0.43, C:0.01, G:0.14, T:0.42
Consensus pattern (66 bp):
AAAATAATTAAATTAGGATTTAGGGGTTTTAAATAAATAAATTAAATTAGACTTTAGGGTTTTAA
A
Found at i:21348865 original size:33 final size:34
Alignment explanation
Indices: 21348728--21348849 Score: 178
Period size: 33 Copynumber: 3.7 Consensus size: 34
21348718 TTTTTTTTTA
21348728 AAAT-AATTAAATTAGGTTTTAGGGGTTTTAAAT
1 AAATAAATTAAATTAGGTTTTAGGGGTTTTAAAT
* *
21348761 AAATTAATTAAATTAGATTTT-GGGGTTTTAAAT
1 AAATAAATTAAATTAGGTTTTAGGGGTTTTAAAT
* *
21348794 AAATAGATTAAATTA-GATTTAGGGGTTTTAAAT
1 AAATAAATTAAATTAGGTTTTAGGGGTTTTAAAT
*
21348827 AAATAAATTAAATTAGGCTTTAG
1 AAATAAATTAAATTAGGTTTTAG
21348850 TTTTTTAAAA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
32 3 0.04
33 55 0.70
34 21 0.27
ACGTcount: A:0.42, C:0.01, G:0.16, T:0.41
Consensus pattern (34 bp):
AAATAAATTAAATTAGGTTTTAGGGGTTTTAAAT
Found at i:21349162 original size:125 final size:126
Alignment explanation
Indices: 21348941--21349210 Score: 375
Period size: 125 Copynumber: 2.2 Consensus size: 126
21348931 TCGAAAGATT
* * * * * *
21348941 TTTTTTTACAGTAGTTTC-AAAAAAATTATTTTGTGAAGACGATTCTGAAAAGATAATGTCAAAA
1 TTTTTATACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAA
* * *
21349005 ATGCTTCAAGTAGGATGCACTATCAGCAAAATTACTG-AAAAAGC-TCTCACGTGAATGCTC
66 ACGCTTCAAGTAAGATGCACTATCAGCAAAATTACTGAAAAAAGCTTC-CACGTGAACGCTC
*
21349065 TTTTTATACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAGTGTCAAAA
1 TTTTTATACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAA
* * *
21349130 ACGCTTCAAGTAAGATGCACTGTCAGCAAAATTATTGAAAAAAGCTTCCACGTGGACGCTC
66 ACGCTTCAAGTAAGATGCACTATCAGCAAAATTACTGAAAAAAGCTTCCACGTGAACGCTC
* *
21349191 TTTTTCTACAATAGTTCCTG
1 TTTTTATACAGTAGTTCCTG
21349211 CTTGGCCTTA
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
124 16 0.12
125 74 0.58
126 36 0.28
127 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (126 bp):
TTTTTATACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAA
ACGCTTCAAGTAAGATGCACTATCAGCAAAATTACTGAAAAAAGCTTCCACGTGAACGCTC
Found at i:21362265 original size:17 final size:18
Alignment explanation
Indices: 21362227--21362271 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
21362217 CTAAACTGAT
*
21362227 AACATATATAAATTTTGGA
1 AACATATAAAAATTTT-GA
*
21362246 AACTTATAAAAATTTT-A
1 AACATATAAAAATTTTGA
21362263 AACATATAA
1 AACATATAA
21362272 GGGTCACACG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 9 0.39
19 14 0.61
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (18 bp):
AACATATAAAAATTTTGA
Found at i:21363504 original size:47 final size:47
Alignment explanation
Indices: 21363451--21363626 Score: 237
Period size: 47 Copynumber: 3.7 Consensus size: 47
21363441 CATCGATAAC
21363451 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCAGAG
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCAGAG
* * *
21363498 TACCTATACCATGGCCTGTAGCCAAATCAAGGTAACTTATCCCGGAG
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCAGAG
* ** * *
21363545 CACCTATACCATGGCCC-ATAGCCAAATCAAGGTAACTCCTCTCCAAAA
1 TACCTATACCATGGCCCGA-AGCCAAATCAAGGTAACTTATC-CCAGAG
* *
21363593 TACCTATACCATGGCTCGTAGCCAAATCAAGGTA
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTA
21363627 TCACTCGCAC
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
47 79 0.71
48 33 0.29
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (47 bp):
TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCAGAG
Found at i:21364695 original size:26 final size:25
Alignment explanation
Indices: 21364666--21364714 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
21364656 CATTAACACT
*
21364666 ACCAATGGTCTAATATCATCATAAGG
1 ACCAATGGTCTAATA-AATCATAAGG
* *
21364692 ACCATTGGTTTAATAAATCATAA
1 ACCAATGGTCTAATAAATCATAA
21364715 CAATTAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (25 bp):
ACCAATGGTCTAATAAATCATAAGG
Found at i:21367107 original size:24 final size:24
Alignment explanation
Indices: 21367041--21367117 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
21367031 AGTGTTAGAA
* * *
21367041 ATATACTATATATATTGTTTAAAGT
1 ATATACTATTTATATTG-TCAAAAT
* * *
21367066 ATATAC-A-TGAAATAGTCAAAAT
1 ATATACTATTTATATTGTCAAAAT
21367088 ATATACTATTTATATTGTCAAAAT
1 ATATACTATTTATATTGTCAAAAT
21367112 ATATAC
1 ATATAC
21367118 ATAATGTATA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
22 11 0.27
23 5 0.12
24 19 0.46
25 6 0.15
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.40
Consensus pattern (24 bp):
ATATACTATTTATATTGTCAAAAT
Found at i:21367206 original size:9 final size:9
Alignment explanation
Indices: 21367192--21367216 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
21367182 ATGTATACCT
21367192 ATATATATA
1 ATATATATA
21367201 ATATATATA
1 ATATATATA
21367210 ATATATA
1 ATATATA
21367217 CAAAGTACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATATATATA
Found at i:21367943 original size:20 final size:20
Alignment explanation
Indices: 21367856--21367931 Score: 63
Period size: 20 Copynumber: 3.8 Consensus size: 20
21367846 TATACGTACT
21367856 AAAAATATATATAATAATAT-
1 AAAAATATATATAAT-ATATG
21367876 ATAAAATATA-AT-AT-T-TG
1 A-AAAATATATATAATATATG
*
21367893 AAAACACATGTATATAATATATG
1 -AAA-A-ATATATATAATATATG
21367916 AAAAATATATATAATA
1 AAAAATATATATAATA
21367932 GTATTAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 18
0.69 0.03 0.28
Matches are distributed among these distances:
16 1 0.02
17 3 0.07
18 2 0.04
19 6 0.13
20 16 0.36
21 11 0.24
22 4 0.09
23 2 0.04
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (20 bp):
AAAAATATATATAATATATG
Found at i:21372073 original size:17 final size:18
Alignment explanation
Indices: 21372053--21372086 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
21372043 TATATAACTA
*
21372053 TATTGTTAATA-ATTAAT
1 TATTATTAATATATTAAT
21372070 TATTATTAATATATTAA
1 TATTATTAATATATTAA
21372087 ATTCAACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TATTATTAATATATTAAT
Found at i:21377655 original size:15 final size:15
Alignment explanation
Indices: 21377631--21377660 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
21377621 TGGCCTCCAA
*
21377631 CCCACGCACCCCCGG
1 CCCACACACCCCCGG
21377646 CCCACACACCCCCGG
1 CCCACACACCCCCGG
21377661 TTGGGGATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.67, G:0.17, T:0.00
Consensus pattern (15 bp):
CCCACACACCCCCGG
Found at i:21378850 original size:29 final size:29
Alignment explanation
Indices: 21378808--21378863 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
21378798 AATAGTGTTA
21378808 GTACGACACGTTCGATATGATTACAAATT
1 GTACGACACGTTCGATATGATTACAAATT
21378837 GTACGACACGTTCGATATGATTACAAA
1 GTACGACACGTTCGATATGATTACAAA
21378864 CTAACTTCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (29 bp):
GTACGACACGTTCGATATGATTACAAATT
Found at i:21381927 original size:18 final size:19
Alignment explanation
Indices: 21381894--21381929 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
21381884 GAGTGCATAT
21381894 CTGGCACACGAAGTGCATC
1 CTGGCACACGAAGTGCATC
*
21381913 CTGGCACA-TAAGTGCAT
1 CTGGCACACGAAGTGCAT
21381930 AATCTCATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.19
Consensus pattern (19 bp):
CTGGCACACGAAGTGCATC
Found at i:21384403 original size:7 final size:6
Alignment explanation
Indices: 21384377--21384401 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
21384367 CATTAAAATT
21384377 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
21384402 ATCTAGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:21384603 original size:16 final size:17
Alignment explanation
Indices: 21384553--21384604 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
21384543 TGTTTTTAAC
21384553 AAATATTTTTAAGATAAA
1 AAATATTTTTAAGAT-AA
* *
21384571 AAATACTTTTAATATAA
1 AAATATTTTTAAGATAA
21384588 AAATATTTTTAA-ATAA
1 AAATATTTTTAAGATAA
21384604 A
1 A
21384605 TTACTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
16 5 0.16
17 13 0.42
18 13 0.42
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
AAATATTTTTAAGATAA
Found at i:21389433 original size:20 final size:18
Alignment explanation
Indices: 21389408--21389444 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
21389398 AAAAGATTAT
21389408 AAAAAAATTATAAAATATAG
1 AAAAAAA-TAT-AAATATAG
21389428 AAAAAAATATAAATATA
1 AAAAAAATATAAATATA
21389445 AATATTACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 3 0.18
20 7 0.41
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (18 bp):
AAAAAAATATAAATATAG
Found at i:21389536 original size:20 final size:20
Alignment explanation
Indices: 21389490--21389537 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
21389480 ATAAAAACAT
* *
21389490 TATAAAAATTAAATAGATTC
1 TATAAAAATTAAAAAGATTA
21389510 TATTAAAAATTACAAAAG-TTA
1 TA-TAAAAATTA-AAAAGATTA
21389531 TATAAAA
1 TATAAAA
21389538 TTATTAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 7 0.29
21 13 0.54
22 4 0.17
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (20 bp):
TATAAAAATTAAAAAGATTA
Found at i:21390878 original size:27 final size:27
Alignment explanation
Indices: 21390811--21390878 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
21390801 CCAACATCGT
* * * *
21390811 CCGATTTAATATCCACCACTTCAGTTC
1 CCGATCTAACATCCACCACATCAGATC
* *
21390838 CCGGTCTAATATCCACCACATCAGATC
1 CCGATCTAACATCCACCACATCAGATC
*
21390865 CCGATCTTACATCC
1 CCGATCTAACATCC
21390879 TTAATCTCTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.26, C:0.37, G:0.09, T:0.28
Consensus pattern (27 bp):
CCGATCTAACATCCACCACATCAGATC
Found at i:21401114 original size:125 final size:126
Alignment explanation
Indices: 21400847--21401113 Score: 360
Period size: 125 Copynumber: 2.1 Consensus size: 126
21400837 GGCCAAGCAG
* * *
21400847 GAACTATTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTTTTCAATAATTTTGCTGACAGTGCATC
1 GAACTACTGTAAAAAAAGAGCATCCACGTGGAAGCTTTTTTCAATAATTTTGCTGACAGTGCATC
* * * * * *
21400912 TTACTTGAAGCGTTTTTGACACTATTTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAA
66 CTACTTGAAGCATTTTTGACACTATCTTTTCAAAATCGTCTTCACAAAATAATTTTTTCAA
* * * *
21400973 GAACTACTGTATAAAAAGAGCATTCACGT-GAGAGC-TTTTTCAGTAATTTTGCTGATAGTGCAT
1 GAACTACTGTAAAAAAAGAGCATCCACGTGGA-AGCTTTTTTCAATAATTTTGCTGACAGTGCAT
* **
21401036 CCTACTTGAAGCATTTTTGACATTATCTTTTCAAAATCGTCTTCACAAAATAATTTTTTTGA
65 CCTACTTGAAGCATTTTTGACACTATCTTTTCAAAATCGTCTTCACAAAATAATTTTTTCAA
21401098 -AACTACTGTAAAAAAA
1 GAACTACTGTAAAAAAA
21401114 ATCTTTCTTG
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
124 15 0.12
125 81 0.65
126 28 0.23
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (126 bp):
GAACTACTGTAAAAAAAGAGCATCCACGTGGAAGCTTTTTTCAATAATTTTGCTGACAGTGCATC
CTACTTGAAGCATTTTTGACACTATCTTTTCAAAATCGTCTTCACAAAATAATTTTTTCAA
Found at i:21401253 original size:33 final size:33
Alignment explanation
Indices: 21401216--21401337 Score: 185
Period size: 33 Copynumber: 3.7 Consensus size: 33
21401206 AAACTAAAGC
21401216 CTAATTTAATTTATTTATTTAAAACCCCTAAAT
1 CTAATTTAATTTATTTATTTAAAACCCCTAAAT
*
21401249 CTAATTTAATTTATTTATTTAAAACCCCGAAAT
1 CTAATTTAATTTATTTATTTAAAACCCCTAAAT
* * *
21401282 CTAATTTAATTAATTTATTTAAAACCCTTAAAAC
1 CTAATTTAATTTATTTATTTAAAACCCCT-AAAT
21401316 CTAATTTAA-TTATTT-TTTAAAA
1 CTAATTTAATTTATTTATTTAAAA
21401338 AAAACTCTAA
Statistics
Matches: 82, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
32 7 0.09
33 63 0.77
34 12 0.15
ACGTcount: A:0.41, C:0.13, G:0.01, T:0.45
Consensus pattern (33 bp):
CTAATTTAATTTATTTATTTAAAACCCCTAAAT
Found at i:21401325 original size:34 final size:33
Alignment explanation
Indices: 21401201--21401337 Score: 165
Period size: 33 Copynumber: 4.2 Consensus size: 33
21401191 AATTATTTTT
* *
21401201 TTTAAAA-ACTAAAGCCTAATTTAATTTATTTA
1 TTTAAAACCCTAAAACCTAATTTAATTTATTTA
*
21401233 TTTAAAACCCCT-AAATCTAATTTAATTTATTTA
1 TTTAAAA-CCCTAAAACCTAATTTAATTTATTTA
** * *
21401266 TTTAAAACCCCGAAATCTAATTTAATTAATTTA
1 TTTAAAACCCTAAAACCTAATTTAATTTATTTA
21401299 TTTAAAACCCTTAAAACCTAATTTAA-TTATTT-
1 TTTAAAACCC-TAAAACCTAATTTAATTTATTTA
21401331 TTTAAAA
1 TTTAAAA
21401338 AAAACTCTAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
32 17 0.18
33 61 0.66
34 14 0.15
ACGTcount: A:0.42, C:0.13, G:0.01, T:0.43
Consensus pattern (33 bp):
TTTAAAACCCTAAAACCTAATTTAATTTATTTA
Found at i:21404689 original size:9 final size:9
Alignment explanation
Indices: 21404672--21404737 Score: 55
Period size: 9 Copynumber: 7.4 Consensus size: 9
21404662 TTGAAGGTAC
*
21404672 TTTAGTTTT
1 TTTAATTTT
21404681 TTTAA-TTT
1 TTTAATTTT
21404689 TTTAATTTT
1 TTTAATTTT
*
21404698 TTT-ACTTT
1 TTTAATTTT
*
21404706 TTTAGTTTT
1 TTTAATTTT
* *
21404715 TTTACTTTAA
1 TTTAATTT-T
*
21404725 TTTAATATT
1 TTTAATTTT
21404734 TTTA
1 TTTA
21404738 TTTAGTTTAT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
8 15 0.33
9 24 0.53
10 6 0.13
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.73
Consensus pattern (9 bp):
TTTAATTTT
Found at i:21404697 original size:7 final size:8
Alignment explanation
Indices: 21404678--21404716 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
21404668 GTACTTTAGT
21404678 TTTTTTAA
1 TTTTTTAA
21404686 TTTTTTAA
1 TTTTTTAA
*
21404694 TTTTTTTAC
1 -TTTTTTAA
*
21404703 TTTTTTAG
1 TTTTTTAA
21404711 TTTTTT
1 TTTTTT
21404717 TACTTTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (8 bp):
TTTTTTAA
Found at i:21404697 original size:17 final size:17
Alignment explanation
Indices: 21404672--21404737 Score: 78
Period size: 17 Copynumber: 3.8 Consensus size: 17
21404662 TTGAAGGTAC
* *
21404672 TTTAGTTTTTTTAATTT
1 TTTAATTTTTTTACTTT
21404689 TTTAATTTTTTTACTTT
1 TTTAATTTTTTTACTTT
*
21404706 TTTAGTTTTTTTACTTT
1 TTTAATTTTTTTACTTT
*
21404723 AATTTAATATTTTTA
1 --TTTAATTTTTTTA
21404738 TTTAGTTTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
17 31 0.74
19 11 0.26
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTAATTTTTTTACTTT
Found at i:21404763 original size:15 final size:15
Alignment explanation
Indices: 21404729--21404766 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
21404719 CTTTAATTTA
21404729 ATATTTTTATTTAGT
1 ATATTTTTATTTAGT
*
21404744 TTATTTTTATTGT-GT
1 ATATTTTTATT-TAGT
21404759 ATATTTTT
1 ATATTTTT
21404767 TTACTCTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 19 0.95
16 1 0.05
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.71
Consensus pattern (15 bp):
ATATTTTTATTTAGT
Found at i:21406360 original size:11 final size:11
Alignment explanation
Indices: 21406344--21406381 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
21406334 AAATGATAGT
21406344 AAAACAGTAGA
1 AAAACAGTAGA
* *
21406355 AAAACAGAAGT
1 AAAACAGTAGA
21406366 AAAACAGT-GA
1 AAAACAGTAGA
21406376 AAAACA
1 AAAACA
21406382 ATAGCAGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
10 7 0.30
11 16 0.70
ACGTcount: A:0.66, C:0.11, G:0.16, T:0.08
Consensus pattern (11 bp):
AAAACAGTAGA
Found at i:21406379 original size:21 final size:22
Alignment explanation
Indices: 21406341--21406381 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
21406331 ATGAAATGAT
21406341 AGTAAAACAGTAGAAAAACAGA
1 AGTAAAACAGTAGAAAAACAGA
21406363 AGTAAAACAGT-GAAAAACA
1 AGTAAAACAGTAGAAAAACA
21406382 ATAGCAGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.63, C:0.10, G:0.17, T:0.10
Consensus pattern (22 bp):
AGTAAAACAGTAGAAAAACAGA
Found at i:21417941 original size:6 final size:6
Alignment explanation
Indices: 21417909--21417949 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
21417899 ACAGTACCTA
* *
21417909 AACAGT AATCAGT AACGGT AGCAGT AACAGT AACAGT AACA
1 AACAGT AA-CAGT AACAGT AACAGT AACAGT AACAGT AACA
21417950 ATATTCAACA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (6 bp):
AACAGT
Found at i:21418040 original size:45 final size:45
Alignment explanation
Indices: 21417932--21418042 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
21417922 AACGGTAGCA
* * *
21417932 GTAACAGTAACAGTAACAATATTCAACATACAAAGTGTTGAATCT
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCT
* *
21417977 GTAACAGTAAC-GATAACAGTATTCGATACACAAAGTGTCGAATC-
1 GTAACAGTAACAG-TAACAGTATTCAACACACAAAGTGTCGAATCT
21418021 GATAACAGTAACAGTAACAGTA
1 G-TAACAGTAACAGTAACAGTA
21418043 ATAGTAGTCG
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
44 2 0.03
45 55 0.95
46 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.23
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCT
Done.