Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 69 of 352
Found at i:21688308 original size:45 final size:45
Alignment explanation
Indices: 21688198--21688322 Score: 137
Period size: 45 Copynumber: 2.8 Consensus size: 45
21688188 ACAAGAAACG
* * * *
21688198 AGTAAGACCATGATTGAAAGATGTTATGGCATCACTATTCTATCA
1 AGTAAGACCAAGACTAAAAGACGTTATGGCATCACTATTCTATCA
* * * *
21688243 AGTAAGACCATGACTTAAAGACGTTATGACATCA-TGATTCTATCG
1 AGTAAGACCAAGACTAAAAGACGTTATGGCATCACT-ATTCTATCA
*
21688288 AGTAAGACCACAG-CTAAAAGACGCTATGGCATCAC
1 AGTAAGACCA-AGACTAAAAGACGTTATGGCATCAC
21688323 AAATCAAAGG
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
44 1 0.01
45 66 0.97
46 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (45 bp):
AGTAAGACCAAGACTAAAAGACGTTATGGCATCACTATTCTATCA
Found at i:21688765 original size:49 final size:49
Alignment explanation
Indices: 21688658--21688755 Score: 151
Period size: 49 Copynumber: 2.0 Consensus size: 49
21688648 CGAGCATGAA
* * * *
21688658 AAAGGAAAAGTATGTGTTCAAATGAACTATGTCATGAAGTTATAAAAAG
1 AAAGGAAATGTATGTATTCAAATGAACTATGTCAAGAAATTATAAAAAG
*
21688707 AAAGGAAATGTATGTATTCGAATGAACTATGTCAAGAAATTATAAAAAG
1 AAAGGAAATGTATGTATTCAAATGAACTATGTCAAGAAATTATAAAAAG
21688756 GATTGAAATG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.48, C:0.06, G:0.19, T:0.27
Consensus pattern (49 bp):
AAAGGAAATGTATGTATTCAAATGAACTATGTCAAGAAATTATAAAAAG
Found at i:21691500 original size:23 final size:23
Alignment explanation
Indices: 21691474--21691520 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
21691464 AATATTGTTG
21691474 ATGCCTTCTTTGTTGTTGTGGTC
1 ATGCCTTCTTTGTTGTTGTGGTC
21691497 ATGCCTTCTTTGTTGTTGTGGTC
1 ATGCCTTCTTTGTTGTTGTGGTC
21691520 A
1 A
21691521 AAAGCCTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.06, C:0.17, G:0.26, T:0.51
Consensus pattern (23 bp):
ATGCCTTCTTTGTTGTTGTGGTC
Found at i:21692998 original size:3 final size:3
Alignment explanation
Indices: 21692987--21693024 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
21692977 AGAAGAAAGG
*
21692987 GAA GGA GAA GAA -AA GAA G-A GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
21693025 GGGAAGGGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:21700615 original size:32 final size:31
Alignment explanation
Indices: 21700516--21700657 Score: 99
Period size: 33 Copynumber: 4.4 Consensus size: 31
21700506 CTTTGGGTCA
** *
21700516 TATCCACCGCAATATAGCACTCCTCTTATTCCA
1 TATCCACCGCAATATAGCACTCCTC--GGTCCG
* * * * *
21700549 TATCCACCGTAGTACAACACTCATCTCGGCCCG
1 TATCCACCGCAATATAGCACTC--CTCGGTCCG
21700582 TATCCACCGCAATATAGCACTCGCTCGGTCCG
1 TATCCACCGCAATATAGCACTC-CTCGGTCCG
* *
21700614 TATCCACTGCAATACT-CCACTCCTCTTAGGT-CG
1 TATCCACCGCAATA-TAGCACTCCTC---GGTCCG
21700647 TATCCACCGCA
1 TATCCACCGCA
21700658 GTATGACACT
Statistics
Matches: 86, Mismatches: 17, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
31 3 0.03
32 26 0.30
33 51 0.59
34 3 0.03
35 3 0.03
ACGTcount: A:0.24, C:0.38, G:0.13, T:0.25
Consensus pattern (31 bp):
TATCCACCGCAATATAGCACTCCTCGGTCCG
Found at i:21702867 original size:19 final size:18
Alignment explanation
Indices: 21702831--21702878 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
21702821 AGAAAGTTAC
* *
21702831 AGAGAAAGGAACATGAAA
1 AGAGAAAGAAACAAGAAA
*
21702849 GAGAGAAAGAAAGAAGAAA
1 -AGAGAAAGAAACAAGAAA
*
21702868 AGAAAAAGAAA
1 AGAGAAAGAAA
21702879 AAAGGGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.69, C:0.02, G:0.27, T:0.02
Consensus pattern (18 bp):
AGAGAAAGAAACAAGAAA
Found at i:21706693 original size:17 final size:17
Alignment explanation
Indices: 21706671--21706703 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
21706661 AATATATATT
21706671 AACCCAAGTACCCAACC
1 AACCCAAGTACCCAACC
*
21706688 AACCCAATTACCCAAC
1 AACCCAAGTACCCAAC
21706704 TCAATCATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.45, G:0.03, T:0.09
Consensus pattern (17 bp):
AACCCAAGTACCCAACC
Found at i:21706814 original size:9 final size:9
Alignment explanation
Indices: 21706793--21706869 Score: 73
Period size: 9 Copynumber: 8.6 Consensus size: 9
21706783 TTTATACAAA
*
21706793 TAATTCGGT
1 TAATTCGGG
*
21706802 TAATTTGGG
1 TAATTCGGG
*
21706811 TAATTCAGG
1 TAATTCGGG
21706820 TAATTCGGG
1 TAATTCGGG
*
21706829 TAATTCGGT
1 TAATTCGGG
**
21706838 TAATTCGAT
1 TAATTCGGG
**
21706847 TAATTCGAT
1 TAATTCGGG
*
21706856 TAATTCGGT
1 TAATTCGGG
21706865 TAATT
1 TAATT
21706870 TTATACTTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (9 bp):
TAATTCGGG
Found at i:21706816 original size:18 final size:18
Alignment explanation
Indices: 21706793--21706869 Score: 93
Period size: 18 Copynumber: 4.3 Consensus size: 18
21706783 TTTATACAAA
*
21706793 TAATTCGGTTAATTTGGG
1 TAATTCGGTTAATTCGGG
21706811 TAATTCAGG-TAATTCGGG
1 TAATTC-GGTTAATTCGGG
**
21706829 TAATTCGGTTAATTCGAT
1 TAATTCGGTTAATTCGGG
* *
21706847 TAATTCGATTAATTCGGT
1 TAATTCGGTTAATTCGGG
21706865 TAATT
1 TAATT
21706870 TTATACTTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
17 2 0.04
18 48 0.92
19 2 0.04
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (18 bp):
TAATTCGGTTAATTCGGG
Found at i:21706850 original size:27 final size:27
Alignment explanation
Indices: 21706793--21706869 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
21706783 TTTATACAAA
* *
21706793 TAATTCGGTTAATTTGGGTAATTCAGG
1 TAATTCGGTTAATTCGGTTAATTCAGG
* *
21706820 TAATTCGGGTAATTCGGTTAATTC-GAT
1 TAATTCGGTTAATTCGGTTAATTCAG-G
*
21706847 TAATTCGATTAATTCGGTTAATT
1 TAATTCGGTTAATTCGGTTAATT
21706870 TTATACTTAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.02
27 42 0.98
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (27 bp):
TAATTCGGTTAATTCGGTTAATTCAGG
Found at i:21707811 original size:27 final size:27
Alignment explanation
Indices: 21707781--21707837 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
21707771 GATAGGCACA
*
21707781 ACTGGTGCCGCCTA-TCTGATACCCTCC
1 ACTGGTGCCGCCTACT-TGACACCCTCC
21707808 ACTGGTGCCGCCTACTTGACACCCTCC
1 ACTGGTGCCGCCTACTTGACACCCTCC
21707835 ACT
1 ACT
21707838 ACATAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.16, C:0.42, G:0.18, T:0.25
Consensus pattern (27 bp):
ACTGGTGCCGCCTACTTGACACCCTCC
Found at i:21714307 original size:20 final size:19
Alignment explanation
Indices: 21714284--21714354 Score: 90
Period size: 19 Copynumber: 3.7 Consensus size: 19
21714274 AAATTACAAA
21714284 AAAAATTCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
*
21714303 CAAAAATTCAAAATAGTTTT
1 -AAAAATTCAAAATAATTTT
*
21714323 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
*
21714342 AAAAAATCAAAAT
1 AAAAATTCAAAAT
21714355 TTATATTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
18 3 0.07
19 24 0.53
20 18 0.40
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.34
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:21715343 original size:3 final size:3
Alignment explanation
Indices: 21715337--21715633 Score: 178
Period size: 3 Copynumber: 99.7 Consensus size: 3
21715327 AAGAATGATG
* *
21715337 ATA ATA ATA AT- ATA ATA ATA ATG ATA ATA A-A ATA ACTA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA
* * * * * * * * *
21715381 ATA GTA ATA GAAA ATA ATA ATA ATA ATA ATA GTA GTA GTG GTG GTA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
21715427 AAA ATA ATA ATA ATG ATA GTA ATA ATA ATA GA-A ATA ATA AT- ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * * * * *
21715471 TTAA ATA ATA ATA GTA ATA ATA ATTA CTA AAA ATG ATA ATA GTA ATA
1 AT-A ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
21715518 A-A ATA A-A ATG ATA ATA ATA ATG TTA ATA GTA ATA AAA ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
21715564 AAA ATA GTA ATA ATA ATA ATA TTG ATA ATAA ATA GTA ATA GTA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA
*
21715609 ATA GTA A-A ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
21715634 GATGATGATG
Statistics
Matches: 223, Mismatches: 57, Indels: 28
0.72 0.19 0.09
Matches are distributed among these distances:
2 15 0.07
3 197 0.88
4 11 0.05
ACGTcount: A:0.60, C:0.01, G:0.09, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:21715516 original size:22 final size:23
Alignment explanation
Indices: 21715460--21715538 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
21715450 AATAATAGAA
*
21715460 ATAATAAT-ATGTTAAATAATAAT-
1 ATAATAATAAT-TAAAATAA-AATG
**
21715483 AGTAATAATAATTACTA-AAAATG
1 A-TAATAATAATTAAAATAAAATG
*
21715506 ATAATAGTAA-TAAAATAAAATG
1 ATAATAATAATTAAAATAAAATG
21715528 ATAATAATAAT
1 ATAATAATAAT
21715539 GTTAATAGTA
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
21 3 0.07
22 26 0.59
23 4 0.09
24 9 0.20
25 2 0.05
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.33
Consensus pattern (23 bp):
ATAATAATAATTAAAATAAAATG
Found at i:21717287 original size:49 final size:49
Alignment explanation
Indices: 21717178--21717312 Score: 191
Period size: 49 Copynumber: 2.7 Consensus size: 49
21717168 GAGAAATAAG
* *
21717178 ACTTGTAG-TTCCAATCTACTCCACTACAACTTCAAGGATATGAGATTTGTA
1 ACTTGTAGCTT-CAATCTACTCCACTGCAACTTC-A-GAGATGAGATTTGTA
* *
21717229 ACTTTTAGCTTCAATCTGCTCCACTGCAACTTCAGAGATGAGATTTGTA
1 ACTTGTAGCTTCAATCTACTCCACTGCAACTTCAGAGATGAGATTTGTA
*
21717278 ACTTGTAGCTTTAATCTACTCCACTGCAACTTCAG
1 ACTTGTAGCTTCAATCTACTCCACTGCAACTTCAG
21717313 GGAGATAAGA
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
49 46 0.61
50 1 0.01
51 27 0.36
52 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (49 bp):
ACTTGTAGCTTCAATCTACTCCACTGCAACTTCAGAGATGAGATTTGTA
Found at i:21717514 original size:130 final size:131
Alignment explanation
Indices: 21717289--21717627 Score: 404
Period size: 130 Copynumber: 2.6 Consensus size: 131
21717279 CTTGTAGCTT
* *
21717289 TAATCTACTCC-ACTGCAACTTCAGGGAGATAAGATCCGCT-ATCTTCAGTCTGCTCCTACTGCA
1 TAATCTGCTCCTACTGCAACTTCAGGGAGATAAGATCTG-TAATCTTCAGTCTGCT-CTACTGCA
*
21717352 A-TTTCAGGGAGATAAGACTCGCAACTTCAACCTGCTCTACTGA-AACTTCAGGGAGATAAGGTT
64 ACTTT-AGGGAGATAAGACTCGCAACTTCAACCTGCTCTACT-ACAACTTCAGAGAGATAAGGTT
21717415 TGTTA
127 TGTTA
* * * * *
21717420 TGATTTTCT-CTACTGTAACTTCAGAGAGATAAGATCTGTAATCTTCAGTCTGCTCTACTGCAAC
1 TAATCTGCTCCTACTGCAACTTCAGGGAGATAAGATCTGTAATCTTCAGTCTGCTCTACTGCAAC
* * * *
21717484 TTTAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTACAATTTTAGAGAGATAAGGTTTGTT
66 TTTAGGGAGATAAGACTCGCAACTTCAACCTGCTCTACTACAACTTCAGAGAGATAAGGTTTGTT
21717549 A
131 A
* * ** * *
21717550 TAATCTGCTCCTACTGCAACTTCAGGGATATAAGA-CTCGCAA-CTTCAACCTACTCTACTACAA
1 TAATCTGCTCCTACTGCAACTTCAGGGAGATAAGATCT-GTAATCTTCAGTCTGCTCTACTGCAA
* *
21717613 CTTCAAGGAGATAAG
65 CTTTAGGGAGATAAG
21717628 GTTTGTTATG
Statistics
Matches: 178, Mismatches: 24, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
129 1 0.01
130 105 0.59
131 72 0.40
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (131 bp):
TAATCTGCTCCTACTGCAACTTCAGGGAGATAAGATCTGTAATCTTCAGTCTGCTCTACTGCAAC
TTTAGGGAGATAAGACTCGCAACTTCAACCTGCTCTACTACAACTTCAGAGAGATAAGGTTTGTT
A
Found at i:21717564 original size:86 final size:85
Alignment explanation
Indices: 21717468--21717669 Score: 262
Period size: 86 Copynumber: 2.4 Consensus size: 85
21717458 TAATCTTCAG
* * * * **
21717468 TCTGCTCTACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTACAA-TTTTA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGACTCGCAACTTCAACCTACTCTACTACAACTTCAA
21717532 GAGAGATAAGGTTTGTTATAA
66 G-GAGATAAGGTTTGTTATAA
*
21717553 TCTGCTCCTACTGCAACTTCAGGGATATAAGACTCGCAACTTCAACCTACTCTACTACAACTTCA
1 TCTGCT-CTACTGCAACTTCAGGGAGATAAGACTCGCAACTTCAACCTACTCTACTACAACTTCA
*
21717618 AGGAGATAAGGTTTGTTATGA
65 AGGAGATAAGGTTTGTTATAA
* * * **
21717639 TTTACTCTACTGTAACTTCAGACAGATAAGA
1 TCTGCTCTACTGCAACTTCAGGGAGATAAGA
21717670 TCTGTAATCT
Statistics
Matches: 101, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
85 27 0.27
86 70 0.69
87 4 0.04
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (85 bp):
TCTGCTCTACTGCAACTTCAGGGAGATAAGACTCGCAACTTCAACCTACTCTACTACAACTTCAA
GGAGATAAGGTTTGTTATAA
Found at i:21717692 original size:86 final size:86
Alignment explanation
Indices: 21717474--21717713 Score: 234
Period size: 86 Copynumber: 2.8 Consensus size: 86
21717464 TCAGTCTGCT
* ** * * **
21717474 CTACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTACAA-TTTTAGAGAGA
1 CTACTGCAACTTCAGACAGATAAGACTCGCAACTTCAACCTGCTCTACTACAACTTCAAG-GAGA
*
21717538 TAAGGTTTGTTATAATCTGCTC
65 TAAGGTTTGTTATAATCTACTC
** * *
21717560 CTACTGCAACTTCAGGGATATAAGACTCGCAACTTCAACCTACTCTACTACAACTTCAAGGAGAT
1 CTACTGCAACTTCAGACAGATAAGACTCGCAACTTCAACCTGCTCTACTACAACTTCAAGGAGAT
* *
21717625 AAGGTTTGTTATGATTTACT-
66 AAGGTTTGTTATAATCTACTC
* * * ** * * *
21717645 CTACTGTAACTTCAGACAGATAAGA-TCTGTAATCTTTAGTCTGCTCTATTGCAACTTCAGGGAG
1 CTACTGCAACTTCAGACAGATAAGACTC-GCAA-CTTCAACCTGCTCTACTACAACTTCAAGGAG
21717709 ATAAG
64 ATAAG
21717714 ACTTATAACT
Statistics
Matches: 129, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
84 2 0.02
85 24 0.19
86 99 0.77
87 4 0.03
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (86 bp):
CTACTGCAACTTCAGACAGATAAGACTCGCAACTTCAACCTGCTCTACTACAACTTCAAGGAGAT
AAGGTTTGTTATAATCTACTC
Found at i:21717711 original size:216 final size:216
Alignment explanation
Indices: 21717337--21717799 Score: 750
Period size: 216 Copynumber: 2.1 Consensus size: 216
21717327 CTATCTTCAG
* *
21717337 TCTGCTCCTACTGCAATTTCAGGGAGATAAGACTCGCAACTTCAACCTGCTCTACTGAAACTTCA
1 TCTGCTCCTACTGCAACTTCAGGGAGATAAGACTCGCAACTTCAACCTACTCTACTGAAACTTCA
* * *
21717402 GGGAGATAAGGTTTGTTATGATTTTCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATCTTCA
66 AGGAGATAAGGTTTGTTATGATTTACTCTACTGTAACTTCAGACAGATAAGATCTGTAATCTTCA
* * *
21717467 GTCTGCTCTACTGCAACTTTAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTACAATTTTA
131 GTCTGCTCTACTGCAACTTCAGGGAGATAAGACTTATAACTTCAACCTGCTCTACTACAATTTCA
21717532 GAGAGATAAGGTTTGTTATAA
196 GAGAGATAAGGTTTGTTATAA
*
21717553 TCTGCTCCTACTGCAACTTCAGGGATATAAGACTCGCAACTTCAACCTACTCTACT-ACAACTTC
1 TCTGCTCCTACTGCAACTTCAGGGAGATAAGACTCGCAACTTCAACCTACTCTACTGA-AACTTC
*
21717617 AAGGAGATAAGGTTTGTTATGATTTACTCTACTGTAACTTCAGACAGATAAGATCTGTAATCTTT
65 AAGGAGATAAGGTTTGTTATGATTTACTCTACTGTAACTTCAGACAGATAAGATCTGTAATCTTC
* *
21717682 AGTCTGCTCTATTGCAACTTCAGGGAGATAAGACTTATAACTTCAACCTGCTCTACTGCAATTTC
130 AGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTTATAACTTCAACCTGCTCTACTACAATTTC
*
21717747 AGAGAGATAAGGTTTGTTATGA
195 AGAGAGATAAGGTTTGTTATAA
** * *
21717769 TCTGCT-CTGTTGTAACTTCAGAGAGATAAGA
1 TCTGCTCCTACTGCAACTTCAGGGAGATAAGA
21717800 TTTGTAACTT
Statistics
Matches: 228, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
215 21 0.09
216 207 0.91
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (216 bp):
TCTGCTCCTACTGCAACTTCAGGGAGATAAGACTCGCAACTTCAACCTACTCTACTGAAACTTCA
AGGAGATAAGGTTTGTTATGATTTACTCTACTGTAACTTCAGACAGATAAGATCTGTAATCTTCA
GTCTGCTCTACTGCAACTTCAGGGAGATAAGACTTATAACTTCAACCTGCTCTACTACAATTTCA
GAGAGATAAGGTTTGTTATAA
Found at i:21717863 original size:44 final size:44
Alignment explanation
Indices: 21717142--21718028 Score: 397
Period size: 44 Copynumber: 19.8 Consensus size: 44
21717132 TGTCTTACTA
* * * *
21717142 CTTCAATCCGCTCCACTGCAACTTTAGAGAAATAAGACTTGTAGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA-T
* * * ** * *
21717187 -TCCAATCTACTCCACTACAACTTCAAGGATATGAGATTTGTAACTTTTAG
1 CTTCAATCTGCTCCACTGCAACTTC-AGG----GAGATAAG--ACTTGTAT
** *
21717237 CTTCAATCTGCTCCACTGCAACTTCAGAGATGAGATTTGTAACTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAG-G--GAGATAAG--ACTTGTAT
* * *
21717286 CTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGA-TCCGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TG-TAT
* * * * *
21717331 CTTCAGTCTGCTCCTACTGCAATTTCAGGGAGATAAGACTCGCAA
1 CTTCAATCTGCTCC-ACTGCAACTTCAGGGAGATAAGACTTGTAT
* * * **
21717376 CTTCAACCTGCTCTACTGAAACTTCAGGGAGATAAGGTTTGT-T
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAT
* * * * * * *
21717419 -AT-GATTTTCTCTACTGTAACTTCAGAGAGATAAGA-TCTGTAAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGT-AT
* * * *
21717462 CTTCAGTCTGCTCTACTGCAACTTTAGGGAGATAAGACTTGTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAT
* * * * * * **
21717506 CTTCAACCTGCTCTACTACAATTTTAGAGAGATAAGGTTTGT-T
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAT
* * * * *
21717549 -AT-AATCTGCTCCTACTGCAACTTCAGGGATATAAGACTCGCAA
1 CTTCAATCTGCTCC-ACTGCAACTTCAGGGAGATAAGACTTGTAT
* * * * * **
21717592 CTTCAACCTACTCTACTACAACTTCAAGGAGATAAGGTTTGT-T
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAT
* * * * * * **
21717635 -AT-GATTTACTCTACTGTAACTTCAGACAGATAAGA-TCTGTAAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGT-AT
* * * * * *
21717678 CTTTAGTCTGCTCTATTGCAACTTCAGGGAGATAAGACTTATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAT
* * * * **
21717722 CTTCAACCTGCTCTACTGCAATTTCAGAGAGATAAGGTTTGT-T
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAT
* * *** * * *
21717765 -AT-GATCTGCTCTGTTGTAACTTCAGAGAGATAAGATTTGTAACTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-----TAT
* *
21717812 AGCTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGACTTGTGT
1 --CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAT
* * * **
21717858 CTTCAACCTGCTCCACTGCAACTTCAGGGAAAGAAGGTTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAT
* * * * **
21717903 CTTCGATCTACTCCGCTACAACTTCAGGGAGATAAGATCTACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGTAT
* * ** *
21717948 CTTCAGTCTGCTCCACTGCAACATT-AGAGAGATAAGGTTTGCGA-
1 CTTCAATCTGCTCCACTGCAAC-TTCAGGGAGATAAGACTTG-TAT
* * *
21717992 CTTTAATCTGCTCCACTACAACTTCGGGGAGATAAGA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
21718029 TTCGCCATGA
Statistics
Matches: 627, Mismatches: 171, Indels: 89
0.71 0.19 0.10
Matches are distributed among these distances:
40 2 0.00
41 94 0.15
42 23 0.04
43 5 0.01
44 201 0.32
45 152 0.24
46 38 0.06
47 2 0.00
48 1 0.00
49 49 0.08
50 3 0.00
51 57 0.09
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAT
Found at i:21717884 original size:136 final size:132
Alignment explanation
Indices: 21717551--21717898 Score: 407
Period size: 130 Copynumber: 2.6 Consensus size: 132
21717541 GGTTTGTTAT
* * * * *
21717551 AATCTGCTCCTACTGCAACTTCAGGGATATAAGACTCGCAACTTCAACCTACTCTACTACAACTT
1 AATCTGCTCC-ACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAACTT
*
21717616 CA-AGGAGATAAGGTTTGTTATGATTTACTCTACTGTAACTTCAGACAGATAAGATCTGTAATCT
65 CAGA-GAGATAAGGTTTGTTATGATCTACTCTACTGTAACTTCAGACAGATAAGATCTGTAATCT
21717680 TTAG
129 TTAG
* * * *
21717684 --TCTGCTCTATTGCAACTTCAGGGAGATAAGACTTATAACTTCAACCTGCTCTACTGCAATTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAACTTC
* ** * *
21717747 AGAGAGATAAGGTTTGTTATGATCTGCTCTGTTGTAACTTCAGAGAGATAAGATTTGTAA-CTTA
66 AGAGAGATAAGGTTTGTTATGATCTACTCTACTGTAACTTCAGACAGATAAGATCTGTAATCTT-
21717811 TAG
130 TAG
* ** *
21717814 CTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGACTTGTGTCTTCAACCTGCTCCACTGCAA
1 ----AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAA
* * *
21717879 CTTCAGGGAAAGAAGGTTTG
62 CTTCAGAGAGATAAGGTTTG
21717899 CTATCTTCGA
Statistics
Matches: 181, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
129 3 0.02
130 102 0.56
131 8 0.04
136 68 0.38
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (132 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCTACTGCAACTTC
AGAGAGATAAGGTTTGTTATGATCTACTCTACTGTAACTTCAGACAGATAAGATCTGTAATCTTT
AG
Found at i:21717934 original size:89 final size:89
Alignment explanation
Indices: 21717814--21718029 Score: 247
Period size: 89 Copynumber: 2.4 Consensus size: 89
21717804 TAACTTATAG
** * ** *
21717814 CTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGA-CTTGTGTCTTCAACCTGCTCCACTGCA
1 CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATCTACTATCTTCAACCTGCTCCACTGCA
* *
21717878 AC-TTCAGGGAAAGAAGGTTTGCTA
66 ACATT-AGAGAAAGAAGGTTTGCGA
* * **
21717902 TCTTCGATCTACTCCGCTACAACTTCAGGGAGATAAGATCTACTATCTTCAGTCTGCTCCACTGC
1 -CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATCTACTATCTTCAACCTGCTCCACTGC
* *
21717967 AACATTAGAGAGATAAGGTTTGCGA
65 AACATTAGAGAAAGAAGGTTTGCGA
* * *
21717992 CTTTAATCTGCTCCACTACAACTTCGGGGAGATAAGAT
1 CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGAT
21718030 TCGCCATGAT
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
89 65 0.61
90 39 0.37
91 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (89 bp):
CTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATCTACTATCTTCAACCTGCTCCACTGCA
ACATTAGAGAAAGAAGGTTTGCGA
Found at i:21722637 original size:81 final size:82
Alignment explanation
Indices: 21722493--21722653 Score: 234
Period size: 81 Copynumber: 2.0 Consensus size: 82
21722483 GTTATGGAGG
* * * * *
21722493 TGAAGGAAAAATCCAAAGAACGAAAGATTCTATGAATAATTATTTACATGGTATGATTTTGAATG
1 TGAAGGAAAAATCCAAAGAACAAAAGAATCTAAGAATAATTATTTACATGATATGATTATGAATG
*
21722558 AAGAATAAAAGAATATT
66 AAAAATAAAAGAATATT
* * *
21722575 TGAA-GAAAATTCCAAAGAACAAAATAATCTAAGAATAATTATTTGCATGATATGATTATGAATG
1 TGAAGGAAAAATCCAAAGAACAAAAGAATCTAAGAATAATTATTTACATGATATGATTATGAATG
21722639 AAAAATAAAAGAATA
66 AAAAATAAAAGAATA
21722654 AAAGAATATT
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
81 66 0.94
82 4 0.06
ACGTcount: A:0.51, C:0.06, G:0.15, T:0.28
Consensus pattern (82 bp):
TGAAGGAAAAATCCAAAGAACAAAAGAATCTAAGAATAATTATTTACATGATATGATTATGAATG
AAAAATAAAAGAATATT
Found at i:21722728 original size:90 final size:89
Alignment explanation
Indices: 21722558--21722732 Score: 244
Period size: 90 Copynumber: 2.0 Consensus size: 89
21722548 ATTTTGAATG
* * *
21722558 AAGAATAAAAGAATATTTGAAGAAAATTCCAAAGAACAAAATAATCTAAGAATAATTATTTGCAT
1 AAGAATAAAAGAATATTTGAAGAAAAGTCCAAAAAACAAAAAAATCTAAGAATAATTATTTGCAT
* *
21722623 GATATGATTATGAATGAAAAATAA
66 GATATAATTACGAATGAAAAATAA
** *
21722647 AAGAATAAAAGAATATTTGAAGGGAAGTCCAAAAAAACAAAAAAATCTAAGAATAATTATTTGCG
1 AAGAATAAAAGAATATTTGAAGAAAAGTCC-AAAAAACAAAAAAATCTAAGAATAATTATTTGCA
*
21722712 T-AGTGTAATTACGAATGAAAA
65 TGA-TATAATTACGAATGAAAA
21722733 GAATGAAAGA
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
89 28 0.37
90 47 0.63
ACGTcount: A:0.54, C:0.06, G:0.14, T:0.25
Consensus pattern (89 bp):
AAGAATAAAAGAATATTTGAAGAAAAGTCCAAAAAACAAAAAAATCTAAGAATAATTATTTGCAT
GATATAATTACGAATGAAAAATAA
Found at i:21730096 original size:3 final size:3
Alignment explanation
Indices: 21730090--21730356 Score: 130
Period size: 3 Copynumber: 89.3 Consensus size: 3
21730080 AAGAATGATG
* *
21730090 ATA ATA ATA AT- ATA ATA ATA ATG ATA ATA A-A ATA ACTA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA
* * * * * *
21730134 ATA GTA ATA GAAA ATA ATA ATA ATA ATA ATA ATA ATA GTA GTA GTG
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * ** *
21730180 GTG GTG GTA AAA ATA ATA ATA ATG ATA GTA ATA ATA ATA GCA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
21730228 AT- ATG TTAA ATA ATA ATA GTA ATA ATA ATTA CTA AAA ATG ATA ATA
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA
* * * * * * *
21730274 GTA GTA A-A ATA A-A ATG ATA ATA ATA ATG TTA ATA GTA ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
21730320 AAA ATA GTA ATA ATA GTA ATA ATA ATA TTG ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
21730357 ATAGTAATCG
Statistics
Matches: 199, Mismatches: 56, Indels: 18
0.73 0.21 0.07
Matches are distributed among these distances:
2 10 0.05
3 182 0.91
4 7 0.04
ACGTcount: A:0.57, C:0.01, G:0.10, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:21730380 original size:3 final size:3
Alignment explanation
Indices: 21730372--21730420 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
21730362 AATCGTAAAT
21730372 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
21730420 T
1 T
21730421 AAAAGAAGAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:21736488 original size:4 final size:4
Alignment explanation
Indices: 21736474--21736504 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
21736464 ACTTTTCATG
*
21736474 AAAT GAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
21736505 CCGTGAAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:21741558 original size:9 final size:9
Alignment explanation
Indices: 21741544--21741589 Score: 58
Period size: 9 Copynumber: 5.2 Consensus size: 9
21741534 TGATTATTAA
21741544 AATATATAT
1 AATATATAT
*
21741553 AATATATAA
1 AATATATAT
21741562 AATATATAT
1 AATATATAT
* *
21741571 AATATTTTT
1 AATATATAT
21741580 AA-ATATAT
1 AATATATAT
21741588 AA
1 AA
21741590 AAAAATAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
8 6 0.19
9 25 0.81
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
AATATATAT
Found at i:21741564 original size:18 final size:18
Alignment explanation
Indices: 21741541--21741575 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
21741531 AATTGATTAT
21741541 TAAAATATATATAATATA
1 TAAAATATATATAATATA
21741559 TAAAATATATATAATAT
1 TAAAATATATATAATAT
21741576 TTTTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TAAAATATATATAATATA
Found at i:21747497 original size:5 final size:5
Alignment explanation
Indices: 21747487--21747514 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
21747477 TTTGTGTTTC
21747487 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
21747515 TCACAGCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:21751679 original size:24 final size:23
Alignment explanation
Indices: 21751647--21751692 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
21751637 CAAAACAAAG
*
21751647 AAAATTAAAAGTTTTAATATTTAT
1 AAAAATAAAAGTTTTAAT-TTTAT
*
21751671 AAAAATAAAATTTTTAATTTTA
1 AAAAATAAAAGTTTTAATTTTA
21751693 ATATTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
AAAAATAAAAGTTTTAATTTTAT
Found at i:21751681 original size:30 final size:30
Alignment explanation
Indices: 21751647--21751704 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
21751637 CAAAACAAAG
21751647 AAAA-TTAAAAGTTTTAATATTTATAAAAAT
1 AAAATTTAAAA-TTTTAATATTTATAAAAAT
** *
21751677 AAAATTTTTAATTTTAATATTTTTAAAA
1 AAAATTTAAAATTTTAATATTTATAAAA
21751705 TTAATGTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (30 bp):
AAAATTTAAAATTTTAATATTTATAAAAAT
Found at i:21751708 original size:15 final size:15
Alignment explanation
Indices: 21751660--21751709 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
21751650 ATTAAAAGTT
*
21751660 TTAATATTTATAAAA
1 TTAATATTTTTAAAA
* * **
21751675 ATAAAATTTTTAATT
1 TTAATATTTTTAAAA
21751690 TTAATATTTTTAAAA
1 TTAATATTTTTAAAA
21751705 TTAAT
1 TTAAT
21751710 GTTAATTATT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTAATATTTTTAAAA
Found at i:21755003 original size:62 final size:62
Alignment explanation
Indices: 21754919--21755043 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
21754909 CTTACTATAA
** *
21754919 ATATCAACAAATGTGATCTAAGAATACGTAATAAATTTTTGTAATAATTTCTTTCTTAATTT
1 ATATCAACAAATGTGATCTAAGAATAAATAATAAAATTTTGTAATAATTTCTTTCTTAATTT
21754981 ATATCAACAAATGTGATCTAAGAATAAATAATAAAATTTTGTAATAATTTCTTTCTTAATTT
1 ATATCAACAAATGTGATCTAAGAATAAATAATAAAATTTTGTAATAATTTCTTTCTTAATTT
21755043 A
1 A
21755044 GTTTTTATTT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (62 bp):
ATATCAACAAATGTGATCTAAGAATAAATAATAAAATTTTGTAATAATTTCTTTCTTAATTT
Found at i:21758358 original size:11 final size:12
Alignment explanation
Indices: 21758344--21758372 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
21758334 TATCTTCCGC
21758344 TTTTCTTTTCTT
1 TTTTCTTTTCTT
21758356 TTTTCTTTT-TT
1 TTTTCTTTTCTT
21758367 TTTTCT
1 TTTTCT
21758373 CTATTCAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTCTTTTCTT
Found at i:21759516 original size:42 final size:42
Alignment explanation
Indices: 21759469--21759552 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
21759459 GCCATTTCAA
21759469 AATATGTTTAGGTTATTTCCTTTCTAAGTACTAGATTTTAGG
1 AATATGTTTAGGTTATTTCCTTTCTAAGTACTAGATTTTAGG
*
21759511 AATATGTTTAGGTTATTTCCTTTCTAAGTACTAGGTTTTAGG
1 AATATGTTTAGGTTATTTCCTTTCTAAGTACTAGATTTTAGG
21759553 CTCATATTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.25, C:0.10, G:0.18, T:0.48
Consensus pattern (42 bp):
AATATGTTTAGGTTATTTCCTTTCTAAGTACTAGATTTTAGG
Found at i:21772588 original size:48 final size:48
Alignment explanation
Indices: 21772522--21772655 Score: 169
Period size: 48 Copynumber: 2.8 Consensus size: 48
21772512 CGAGATAATG
* * * *
21772522 GGAATCCAAGTGGCGGCTGGAGTCGAGAACAAAGGGATAGAGATTACA
1 GGAATCCGAGCGGTGGCTGGAGTCGAGAACAAAGGGATAGAGAGTACA
**
21772570 GGAATCCGAGCGGTGGCTGGAGTCGAGAACAAAGGGATAGAGAGTATG
1 GGAATCCGAGCGGTGGCTGGAGTCGAGAACAAAGGGATAGAGAGTACA
* * * * *
21772618 GGAATCCGAGCGGTCGCTGGGGCCAAGAGCAAAGGGAT
1 GGAATCCGAGCGGTGGCTGGAGTCGAGAACAAAGGGAT
21772656 CGGATGTCTT
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.31, C:0.16, G:0.40, T:0.13
Consensus pattern (48 bp):
GGAATCCGAGCGGTGGCTGGAGTCGAGAACAAAGGGATAGAGAGTACA
Found at i:21773387 original size:21 final size:21
Alignment explanation
Indices: 21773357--21773396 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
21773347 TAACGGGACT
21773357 GCTGACGTGGCAAGTTAACCA
1 GCTGACGTGGCAAGTTAACCA
*
21773378 GCTGATGTGGCAAGTTAAC
1 GCTGACGTGGCAAGTTAAC
21773397 TTGCCACGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (21 bp):
GCTGACGTGGCAAGTTAACCA
Found at i:21773864 original size:18 final size:18
Alignment explanation
Indices: 21773841--21773895 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
21773831 ATTTAGGGTT
21773841 ATTTCGATTTTAATTTTG
1 ATTTCGATTTTAATTTTG
*
21773859 ATTTCGATTTCT-ATTTCG
1 ATTTCGATTT-TAATTTTG
* * *
21773877 ATTTTGGTTTCAATTTTG
1 ATTTCGATTTTAATTTTG
21773895 A
1 A
21773896 AACACTCACT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 29 0.97
19 1 0.03
ACGTcount: A:0.20, C:0.09, G:0.13, T:0.58
Consensus pattern (18 bp):
ATTTCGATTTTAATTTTG
Found at i:21773868 original size:12 final size:12
Alignment explanation
Indices: 21773853--21773895 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
21773843 TTCGATTTTA
21773853 ATTTTGATTTCG
1 ATTTTGATTTCG
21773865 ATTTCT-ATTTCG
1 ATTT-TGATTTCG
* *
21773877 ATTTTGGTTTCA
1 ATTTTGATTTCG
21773889 ATTTTGA
1 ATTTTGA
21773896 AACACTCACT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 1 0.04
12 24 0.92
13 1 0.04
ACGTcount: A:0.19, C:0.09, G:0.14, T:0.58
Consensus pattern (12 bp):
ATTTTGATTTCG
Found at i:21774119 original size:89 final size:89
Alignment explanation
Indices: 21774004--21774183 Score: 306
Period size: 89 Copynumber: 2.0 Consensus size: 89
21773994 TGCCGTTGTA
* * *
21774004 TGAATGCCAATATCAAATTGATGTTTGTTGTGTATATCTGCCATTGTTTGTATCCAAGCTGCTAT
1 TGAATGCCAATATCAAACTGATGTTTGCTGTGTATATCTGCCATTGTTTATATCCAAGCTGCTAT
*
21774069 ATTGTATGTGGCAAAATCAAAATT
66 ATTGTATGTAGCAAAATCAAAATT
* *
21774093 TGAATGTCATTATCAAACTGATGTTTGCTGTGTATATCTGCCATTGTTTATATCCAAGCTGCTAT
1 TGAATGCCAATATCAAACTGATGTTTGCTGTGTATATCTGCCATTGTTTATATCCAAGCTGCTAT
21774158 ATTGTATGTAGCAAAATCAAAATT
66 ATTGTATGTAGCAAAATCAAAATT
21774182 TG
1 TG
21774184 TTATTTACCT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.39
Consensus pattern (89 bp):
TGAATGCCAATATCAAACTGATGTTTGCTGTGTATATCTGCCATTGTTTATATCCAAGCTGCTAT
ATTGTATGTAGCAAAATCAAAATT
Found at i:21774480 original size:15 final size:15
Alignment explanation
Indices: 21774460--21774489 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
21774450 GAAGAAGACA
21774460 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
21774475 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
21774490 CATCTGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.40, T:0.40
Consensus pattern (15 bp):
TGTCTGGTAGTGATG
Found at i:21774495 original size:15 final size:15
Alignment explanation
Indices: 21774462--21774495 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
21774452 AGAAGACATG
**
21774462 TCTGGTAGTGATGTG
1 TCTGGTAGTGATGCA
21774477 TCTGGTAGTGATGCA
1 TCTGGTAGTGATGCA
21774492 TCTG
1 TCTG
21774496 AAAATGATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.12, G:0.35, T:0.38
Consensus pattern (15 bp):
TCTGGTAGTGATGCA
Found at i:21776130 original size:22 final size:22
Alignment explanation
Indices: 21776104--21776150 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
21776094 ATCTTTCTAA
*
21776104 TGCCTTTATTTTGACTTCATGT
1 TGCCTTTATTCTGACTTCATGT
*
21776126 TGCCTTTATTCTGACTTTATGT
1 TGCCTTTATTCTGACTTCATGT
21776148 TGC
1 TGC
21776151 TGGTCACATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.19, G:0.15, T:0.53
Consensus pattern (22 bp):
TGCCTTTATTCTGACTTCATGT
Found at i:21776252 original size:27 final size:27
Alignment explanation
Indices: 21776216--21776274 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
21776206 GTGTTGACTA
*
21776216 TTTTT-TAATATGCATGTAGTGAGTAT
1 TTTTTATAATATGCATATAGTGAGTAT
* *
21776242 TTTTTATAATATGCATATAGTGATTGT
1 TTTTTATAATATGCATATAGTGAGTAT
21776269 TTTTTA
1 TTTTTA
21776275 AGGGTGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.17
27 24 0.83
ACGTcount: A:0.27, C:0.03, G:0.15, T:0.54
Consensus pattern (27 bp):
TTTTTATAATATGCATATAGTGAGTAT
Found at i:21777743 original size:36 final size:38
Alignment explanation
Indices: 21777664--21777747 Score: 118
Period size: 38 Copynumber: 2.3 Consensus size: 38
21777654 GTTAGCCATG
**
21777664 TATACCAGCAGCCATGTATAACATATGTTAAACAACAA
1 TATACCAGCAGCCATGTATAACATATCATAAACAACAA
* *
21777702 TATACCAGCAGCCATGTATACCA-A-CATAACCAACAA
1 TATACCAGCAGCCATGTATAACATATCATAAACAACAA
21777738 TATACCAGCA
1 TATACCAGCA
21777748 ACAATATTAC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 19 0.45
37 1 0.02
38 22 0.52
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.20
Consensus pattern (38 bp):
TATACCAGCAGCCATGTATAACATATCATAAACAACAA
Found at i:21777764 original size:36 final size:36
Alignment explanation
Indices: 21777696--21777766 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
21777686 ATATGTTAAA
* * * *
21777696 CAACAATATACCAGCAGCCATGTATACCAACATAAC
1 CAACAATATACCAGCAACAATATATACAAACATAAC
21777732 CAACAATATACCAGCAACAATAT-TACAAAACATAA
1 CAACAATATACCAGCAACAATATATAC-AAACATAA
21777767 GCTGGTTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 3 0.10
36 27 0.90
ACGTcount: A:0.51, C:0.27, G:0.06, T:0.17
Consensus pattern (36 bp):
CAACAATATACCAGCAACAATATATACAAACATAAC
Found at i:21778142 original size:3 final size:3
Alignment explanation
Indices: 21778113--21778183 Score: 56
Period size: 3 Copynumber: 24.0 Consensus size: 3
21778103 CCATTTTTCC
* * * * *
21778113 TCT TCT CCT TC- TCAT TCT TCT TAT TCT TCT TCT TC- TCC TCC TCC
1 TCT TCT TCT TCT TC-T TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
21778157 TCT TCT TCT TCT TCT TTT TCT TTT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT
21778184 CTAACCCAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
2 4 0.07
3 50 0.89
4 2 0.04
ACGTcount: A:0.03, C:0.35, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:21778841 original size:17 final size:18
Alignment explanation
Indices: 21778803--21778849 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 18
21778793 AATCAAATTG
21778803 ATTTT-ATAAAATGATAAA
1 ATTTTCATAAAA-GATAAA
*
21778821 ATTTTCATAAAA-ATAAT
1 ATTTTCATAAAAGATAAA
21778838 A-TTTCATAAAAG
1 ATTTTCATAAAAG
21778850 GTGAATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 10 0.38
17 5 0.19
18 5 0.19
19 6 0.23
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (18 bp):
ATTTTCATAAAAGATAAA
Found at i:21783486 original size:19 final size:17
Alignment explanation
Indices: 21783464--21783498 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
21783454 AAAATTGAAG
21783464 TAATTTTTCTTTCCAACAT
1 TAATTTTT-TTT-CAACAT
21783483 TAATTTTTTTTCAACA
1 TAATTTTTTTTCAACA
21783499 AATACTTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 3 0.19
19 8 0.50
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (17 bp):
TAATTTTTTTTCAACAT
Found at i:21784260 original size:29 final size:27
Alignment explanation
Indices: 21784195--21784260 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 27
21784185 GCACAAATTG
* **
21784195 AAAATATAATAAAAAGTAGTTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
*
21784222 AAATTGAAAATAAAAAAGTAAATATGATTA
1 AAAAT-AAAAT-AAAAAGTAAATAT-ATTA
21784252 AAAATAAAA
1 AAAATAAAA
21784261 ATTATTTAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
27 4 0.13
28 4 0.13
29 15 0.48
30 8 0.26
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:21784262 original size:30 final size:29
Alignment explanation
Indices: 21784205--21784262 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
21784195 AAAATATAAT
** * *
21784205 AAAAAGTAGTTATATTAAAATTGAAAATA
1 AAAAAGTAAATATATTAAAAATAAAAATA
21784234 AAAAAGTAAATATGATTAAAAATAAAAAT
1 AAAAAGTAAATAT-ATTAAAAATAAAAAT
21784263 TATTTAGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.28
Consensus pattern (29 bp):
AAAAAGTAAATATATTAAAAATAAAAATA
Found at i:21790232 original size:93 final size:93
Alignment explanation
Indices: 21790120--21790291 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
21790110 CGCCCATAAG
* *
21790120 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
21790185 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
21790213 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
21790278 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
21790292 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:21790288 original size:46 final size:46
Alignment explanation
Indices: 21790113--21790288 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
21790103 TGTAACCCGC
* *
21790113 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
21790159 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
21790209 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
21790252 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
21790289 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 64 0.59
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:21792889 original size:34 final size:34
Alignment explanation
Indices: 21792849--21792913 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
21792839 GTATCAATAA
21792849 CATGCTTATAACAAA-TATATATAGTAGTAATTAT
1 CATGCTTATAACAAATTATA-ATAGTAGTAATTAT
21792883 CATGCTTATAACAAATTATAATAGTAGTAAT
1 CATGCTTATAACAAATTATAATAGTAGTAAT
21792914 AAACTTGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 26 0.87
35 4 0.13
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.37
Consensus pattern (34 bp):
CATGCTTATAACAAATTATAATAGTAGTAATTAT
Found at i:21792923 original size:34 final size:34
Alignment explanation
Indices: 21792847--21792924 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 34
21792837 TGGTATCAAT
*
21792847 AACATGCTTATAACAAATATATATAGTAGTAATT
1 AACATGCTTATAACAAATATATATAGTAGTAATA
*
21792881 ATCATGCTTATAACAAAT-TATAATAGTAGTAATA
1 AACATGCTTATAACAAATATAT-ATAGTAGTAATA
*
21792915 AACTTGCTTA
1 AACATGCTTA
21792925 ACATGTATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 3 0.08
34 36 0.92
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.36
Consensus pattern (34 bp):
AACATGCTTATAACAAATATATATAGTAGTAATA
Found at i:21793246 original size:27 final size:28
Alignment explanation
Indices: 21793211--21793363 Score: 137
Period size: 28 Copynumber: 5.4 Consensus size: 28
21793201 AGTAGGGGAC
*
21793211 AAAACTGTAAAATCTAAAAAAT-AGGGG
1 AAAATTGTAAAATCTAAAAAATAAGGGG
* ** *
21793238 ATAATTGTAAAATCTAAAAAATGTGGGA
1 AAAATTGTAAAATCTAAAAAATAAGGGG
* * * *
21793266 AAAATTGTAAAATCTGAAGAATAAGTGC
1 AAAATTGTAAAATCTAAAAAATAAGGGG
* * * *
21793294 AAAACTATAAAATCTGAAAAGTAAGGGG
1 AAAATTGTAAAATCTAAAAAATAAGGGG
* *
21793322 AAAATTGTAAAATTCTAAAAAAAATAGGAGC
1 AAAATTGTAAAA-TCTAAAAAATA-AGG-GG
21793353 AAAATTGTAAA
1 AAAATTGTAAA
21793364 TTTGTAAAAC
Statistics
Matches: 99, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
27 20 0.20
28 56 0.57
29 8 0.08
30 3 0.03
31 12 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (28 bp):
AAAATTGTAAAATCTAAAAAATAAGGGG
Found at i:21798173 original size:12 final size:12
Alignment explanation
Indices: 21798156--21798182 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
21798146 TACATGGTTG
21798156 TTGACTATACCT
1 TTGACTATACCT
21798168 TTGACTATACCT
1 TTGACTATACCT
21798180 TTG
1 TTG
21798183 TTAATTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (12 bp):
TTGACTATACCT
Found at i:21801473 original size:40 final size:40
Alignment explanation
Indices: 21801339--21801475 Score: 159
Period size: 40 Copynumber: 3.4 Consensus size: 40
21801329 CGGTTATTTG
* * * * *
21801339 TGGCACTTAGTGTGCGATACAATATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCGGCTATATA
*
21801379 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCGGCTATATA
* * *
21801419 TGACACTTAGTGTGTGACTT-GAGATAGCTTCGGCTATTTA
1 TGGCACTTAGTGTGTGA-TTCGACATAGCTTCGGCTATATA
* *
21801459 CGGCAATTAGTGTGTGA
1 TGGCACTTAGTGTGTGA
21801476 GATATCGAGT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 83 0.98
41 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGTGATTCGACATAGCTTCGGCTATATA
Found at i:21807108 original size:62 final size:62
Alignment explanation
Indices: 21807035--21807159 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
21807025 TACTAAACGC
21807035 TATATATGTAAGTTTGTGATTCAAAATGGATGATTCAATTGATATAAATGATATTTGTGCAT
1 TATATATGTAAGTTTGTGATTCAAAATGGATGATTCAATTGATATAAATGATATTTGTGCAT
21807097 TATATATGTAAGTTTGTGATTCAAAATGGATGATTCAATTGATATAAATGATATTTGTGCAT
1 TATATATGTAAGTTTGTGATTCAAAATGGATGATTCAATTGATATAAATGATATTTGTGCAT
21807159 T
1 T
21807160 GAATGATATG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.42
Consensus pattern (62 bp):
TATATATGTAAGTTTGTGATTCAAAATGGATGATTCAATTGATATAAATGATATTTGTGCAT
Found at i:21814062 original size:21 final size:21
Alignment explanation
Indices: 21814025--21814064 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
21814015 ATCTCAGCGT
*
21814025 TATAATACTCGATCTCACTAC
1 TATAATACTCGAACTCACTAC
21814046 TATAATAACTC-AACTCACT
1 TATAAT-ACTCGAACTCACT
21814065 CCCATAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.38, C:0.28, G:0.03, T:0.33
Consensus pattern (21 bp):
TATAATACTCGAACTCACTAC
Found at i:21817269 original size:16 final size:16
Alignment explanation
Indices: 21817236--21817270 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
21817226 CATTGAATTG
*
21817236 TTTATTCAATCAACAA
1 TTTATTCAATAAACAA
*
21817252 TTTATTCAATAAATAA
1 TTTATTCAATAAACAA
21817268 TTT
1 TTT
21817271 TTTTAAGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (16 bp):
TTTATTCAATAAACAA
Found at i:21825285 original size:19 final size:18
Alignment explanation
Indices: 21825240--21825285 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
21825230 TAACTCAGTC
21825240 AATAATTTTATAATTTTT
1 AATAATTTTATAATTTTT
* *
21825258 ATTTTATTTTATAACTTTTT
1 A-ATAATTTTATAA-TTTTT
21825278 AATAATTT
1 AATAATTT
21825286 ATTTAAACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
18 1 0.05
19 15 0.68
20 6 0.27
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
AATAATTTTATAATTTTT
Found at i:21843474 original size:36 final size:36
Alignment explanation
Indices: 21843434--21843503 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
21843424 ATCATTTAAT
* *
21843434 CCAAACTTAATCTCCTAACTTCTAACAAGTAATCTG
1 CCAAACTCAATCTCCTAACTTCTAACAAGAAATCTG
* *
21843470 CCAAACTCAATCTCCTATCTTCTCACAAGAAATC
1 CCAAACTCAATCTCCTAACTTCTAACAAGAAATC
21843504 GACTAATCTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.36, C:0.31, G:0.04, T:0.29
Consensus pattern (36 bp):
CCAAACTCAATCTCCTAACTTCTAACAAGAAATCTG
Found at i:21851442 original size:18 final size:18
Alignment explanation
Indices: 21851395--21851447 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
21851385 TGTTAATATA
**
21851395 GGAGTAAATCCCCGATTG
1 GGAGTAAATCCTTGATTG
*
21851413 GGAGTCAATCCTTGATTG
1 GGAGTAAATCCTTGATTG
21851431 GGAGTAAATCCTTGATT
1 GGAGTAAATCCTTGATT
21851448 AGGATTTATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (18 bp):
GGAGTAAATCCTTGATTG
Found at i:21857211 original size:20 final size:20
Alignment explanation
Indices: 21857188--21857235 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
21857178 AAATCCAAAT
21857188 TAAAATACTGAAATTCAGGA
1 TAAAATACTGAAATTCAGGA
*
21857208 TAAAATCCTGAAATTCAGGA
1 TAAAATACTGAAATTCAGGA
21857228 TAAGAATA
1 TAA-AATA
21857236 TTGATGTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (20 bp):
TAAAATACTGAAATTCAGGA
Found at i:21861632 original size:39 final size:39
Alignment explanation
Indices: 21861588--21861666 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
21861578 TAAACTTAAG
*
21861588 AGAAATTTTTAAAAAGAAAAACCCAGATAGAATTTATTA
1 AGAAATTCTTAAAAAGAAAAACCCAGATAGAATTTATTA
21861627 AGAAATTCTTAAAAAGAAAAACCCAGATAGAATTTATTA
1 AGAAATTCTTAAAAAGAAAAACCCAGATAGAATTTATTA
21861666 A
1 A
21861667 CTCAAAATAG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.54, C:0.09, G:0.10, T:0.27
Consensus pattern (39 bp):
AGAAATTCTTAAAAAGAAAAACCCAGATAGAATTTATTA
Found at i:21861884 original size:14 final size:14
Alignment explanation
Indices: 21861865--21861891 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
21861855 AAAAAAATGG
21861865 AATAAAATAATAAT
1 AATAAAATAATAAT
21861879 AATAAAATAATAA
1 AATAAAATAATAA
21861892 GATTTGATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATAAAATAATAAT
Found at i:21872260 original size:28 final size:28
Alignment explanation
Indices: 21872220--21872278 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
21872210 TAGAAATAAT
21872220 TATTTTATAATTATTTTGATGTTTATGA
1 TATTTTATAATTATTTTGATGTTTATGA
21872248 TATTTTATAATTATTTTGATGTTTATGA
1 TATTTTATAATTATTTTGATGTTTATGA
21872276 TAT
1 TAT
21872279 GATTGCATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (28 bp):
TATTTTATAATTATTTTGATGTTTATGA
Found at i:21873032 original size:30 final size:30
Alignment explanation
Indices: 21872992--21873051 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
21872982 TTCCCGAGCC
*
21872992 TAGGGACAAAAGTGTAATTATGCAAAAGTT
1 TAGGGACAAAAATGTAATTATGCAAAAGTT
* * *
21873022 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGACAAAAATGTAATTATGCAAAAGTT
21873052 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGACAAAAATGTAATTATGCAAAAGTT
Found at i:21873554 original size:21 final size:20
Alignment explanation
Indices: 21873523--21873569 Score: 76
Period size: 21 Copynumber: 2.3 Consensus size: 20
21873513 GTAACTGGGC
*
21873523 GTCCGAGCTCGTTGAGTTGA
1 GTCCGAACTCGTTGAGTTGA
21873543 GTTCCGAACTCGTTGAGTTGA
1 G-TCCGAACTCGTTGAGTTGA
21873564 GTCCGA
1 GTCCGA
21873570 GTTCGTAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.17, C:0.21, G:0.32, T:0.30
Consensus pattern (20 bp):
GTCCGAACTCGTTGAGTTGA
Found at i:21873575 original size:68 final size:68
Alignment explanation
Indices: 21873471--21873612 Score: 248
Period size: 68 Copynumber: 2.1 Consensus size: 68
21873461 ACTAGGATAT
* * * *
21873471 TTGAGTTCCGAACTTGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTGGGCGTCCGAGCTCGTT
1 TTGAGTTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTGGGCATCCAAGCTCGTT
21873536 GAG
66 GAG
21873539 TTGAGTTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTGGGCATCCAAGCTCGTT
1 TTGAGTTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTGGGCATCCAAGCTCGTT
21873604 GAG
66 GAG
21873607 TTGAGT
1 TTGAGT
21873613 CTGAGTTCAC
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.31
Consensus pattern (68 bp):
TTGAGTTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTGGGCATCCAAGCTCGTT
GAG
Found at i:21875587 original size:10 final size:9
Alignment explanation
Indices: 21875567--21875615 Score: 62
Period size: 10 Copynumber: 5.1 Consensus size: 9
21875557 GTGACCCCTG
21875567 TTTTCAAAT
1 TTTTCAAAT
21875576 TTTTCAAAAT
1 TTTTC-AAAT
21875586 TTTCTCAAAT
1 TTT-TCAAAT
21875596 TTTTCAAAT
1 TTTTCAAAT
*
21875605 TGTTTTAAAT
1 T-TTTCAAAT
21875615 T
1 T
21875616 AGTCCCAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
9 12 0.33
10 22 0.61
11 2 0.06
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (9 bp):
TTTTCAAAT
Found at i:21879516 original size:46 final size:46
Alignment explanation
Indices: 21879157--21879516 Score: 452
Period size: 46 Copynumber: 7.8 Consensus size: 46
21879147 TGATGTCATA
* * * * * *
21879157 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACAC-ATTTCATATCAGGTTGCCATG
* * ** *** *
21879203 GTATCTTTCAACCATAGTTTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATG
* * * *
21879250 GTATCTTTCAACCATTGTCTTACTCATTTCATGTCAAGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
** * *
21879296 GTATCTTTCAACCATGGTCTTATTCATTTCATTTCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
* * *
21879342 GTATCTTTCAACCATGGTCTTATACATTTCATATCACGTTGCGATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
21879388 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
21879434 GTATCTTTCAACCATGGTTTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
*
21879480 GTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCAG
21879517 AGAGCACACT
Statistics
Matches: 288, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
46 251 0.87
47 37 0.13
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
Found at i:21883193 original size:12 final size:13
Alignment explanation
Indices: 21883176--21883208 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
21883166 GAGTCATTGC
21883176 TCTTTTTTT-TTT
1 TCTTTTTTTCTTT
21883188 TCTTTTTTTCTTT
1 TCTTTTTTTCTTT
21883201 T-TTTTTTT
1 TCTTTTTTT
21883209 GTATTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (13 bp):
TCTTTTTTTCTTT
Found at i:21891164 original size:40 final size:40
Alignment explanation
Indices: 21891090--21891271 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
21891080 AACCCAAGTA
* *
21891090 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
21891129 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
21891169 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
21891209 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
21891249 CCTTTGGGACTTAGCCCTGATAT
1 CCTTCGGGACTTAGCCCGGATAT
21891272 CATCCGAATA
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 120 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:21894093 original size:13 final size:13
Alignment explanation
Indices: 21894071--21894126 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
21894061 GACATTTCAA
*
21894071 TAAATTATTTTTT
1 TAAATAATTTTTT
*
21894084 TACATAATTTTTT
1 TAAATAATTTTTT
21894097 ATAAAT-ATATTTTT
1 -TAAATAAT-TTTTT
* *
21894111 TATATAACTTTTT
1 TAAATAATTTTTT
21894124 TAA
1 TAA
21894127 CCCAATTGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
13 24 0.71
14 10 0.29
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (13 bp):
TAAATAATTTTTT
Found at i:21894101 original size:27 final size:28
Alignment explanation
Indices: 21894070--21894125 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 28
21894060 CGACATTTCA
21894070 ATAAAT-TATTTTTTTACATAA-TTTTTT
1 ATAAATATA-TTTTTTACATAACTTTTTT
*
21894097 ATAAATATATTTTTTATATAACTTTTTT
1 ATAAATATATTTTTTACATAACTTTTTT
21894125 A
1 A
21894126 ACCCAATTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 17 0.65
28 9 0.35
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (28 bp):
ATAAATATATTTTTTACATAACTTTTTT
Found at i:21894108 original size:15 final size:15
Alignment explanation
Indices: 21894070--21894114 Score: 60
Period size: 13 Copynumber: 3.2 Consensus size: 15
21894060 CGACATTTCA
21894070 ATAAAT-TATTTTTT
1 ATAAATATATTTTTT
*
21894084 -TACATA-ATTTTTT
1 ATAAATATATTTTTT
21894097 ATAAATATATTTTTT
1 ATAAATATATTTTTT
21894112 ATA
1 ATA
21894115 TAACTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 11 0.42
14 5 0.19
15 10 0.38
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (15 bp):
ATAAATATATTTTTT
Found at i:21903326 original size:32 final size:31
Alignment explanation
Indices: 21903279--21903353 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 31
21903269 TATTTTAGAG
* *
21903279 AAATTAAATTAATATTTAAAAAAATAA-TTTA
1 AAATAAAATAAATATTT-AAAAAATAATTTTA
* *
21903310 ACAATAAAATAAATATTTACAGAATAATTTTA
1 A-AATAAAATAAATATTTAAAAAATAATTTTA
*
21903342 AAATAAAGTAAA
1 AAATAAAATAAA
21903354 AATTAACAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
31 18 0.49
32 19 0.51
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (31 bp):
AAATAAAATAAATATTTAAAAAATAATTTTA
Found at i:21903339 original size:31 final size:31
Alignment explanation
Indices: 21903300--21903376 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
21903290 ATATTTAAAA
* *
21903300 AAATAATTTAACAATAAAATAAATATTTACAG
1 AAATAATTTAA-AATAAAATAAAAATTAACAG
*
21903332 -AATAATTTTAAAATAAAGTAAAAATTAACAG
1 AAATAA-TTTAAAATAAAATAAAAATTAACAG
*
21903363 AAAAAATTTAAAAT
1 AAATAATTTAAAAT
21903377 TGTTGCGATC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
31 30 0.77
32 9 0.23
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (31 bp):
AAATAATTTAAAATAAAATAAAAATTAACAG
Found at i:21905702 original size:5 final size:5
Alignment explanation
Indices: 21905694--21905750 Score: 60
Period size: 5 Copynumber: 10.6 Consensus size: 5
21905684 CTTTTTTTTT
* *
21905694 TTTCA TTTCA TTCCAA TTTCA TTTTAA TTTCA TTTCA TTTACA TTTACA
1 TTTCA TTTCA TTTC-A TTTCA -TTTCA TTTCA TTTCA TTT-CA TTT-CA
21905743 TTTCA TTT
1 TTTCA TTT
21905751 AAATTATCTA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
5 26 0.58
6 19 0.42
ACGTcount: A:0.25, C:0.18, G:0.00, T:0.58
Consensus pattern (5 bp):
TTTCA
Found at i:21905718 original size:22 final size:22
Alignment explanation
Indices: 21905693--21905749 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
21905683 TCTTTTTTTT
21905693 TTTTCATTTCATTCCAATTT-CA
1 TTTTCATTTCATTCC-ATTTACA
* *
21905715 TTTTAATTTCATTTCATTTACA
1 TTTTCATTTCATTCCATTTACA
*
21905737 TTTACATTTCATT
1 TTTTCATTTCATT
21905750 TAAATTATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 4 0.13
22 26 0.87
ACGTcount: A:0.25, C:0.18, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTTCATTTCATTCCATTTACA
Found at i:21905895 original size:11 final size:11
Alignment explanation
Indices: 21905879--21905918 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
21905869 TAATCATCAT
*
21905879 TTCATTTTATA
1 TTCATTTAATA
21905890 TTCATTTAATA
1 TTCATTTAATA
21905901 TTTCATTTAAT-
1 -TTCATTTAATA
21905912 TTCATTT
1 TTCATTT
21905919 TCATTACAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 7 0.26
11 10 0.37
12 10 0.37
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (11 bp):
TTCATTTAATA
Found at i:21905907 original size:12 final size:12
Alignment explanation
Indices: 21905877--21905911 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
21905867 CATAATCATC
*
21905877 ATTTCATTTTAT
1 ATTTCATTTAAT
21905889 A-TTCATTTAAT
1 ATTTCATTTAAT
21905900 ATTTCATTTAAT
1 ATTTCATTTAAT
21905912 TTCATTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (12 bp):
ATTTCATTTAAT
Found at i:21905991 original size:14 final size:14
Alignment explanation
Indices: 21905950--21906027 Score: 52
Period size: 16 Copynumber: 5.1 Consensus size: 14
21905940 TTCATATTTA
21905950 TTTTTCATTTAGCATT
1 TTTTTCATTTA--ATT
21905966 TTATTTCA-TTAATT
1 TT-TTTCATTTAATT
21905980 TTTTTCATTTAAATT
1 TTTTTCATTT-AATT
*
21905995 CTTTTAT-ATTTTATT
1 -TTTT-TCATTTAATT
*
21906010 TTTGTCAATTTAAATT
1 TTTTTC-ATTT-AATT
21906026 TT
1 TT
21906028 AAATTTGTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
13 6 0.12
14 10 0.20
15 11 0.22
16 18 0.35
17 6 0.12
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.65
Consensus pattern (14 bp):
TTTTTCATTTAATT
Found at i:21906210 original size:5 final size:5
Alignment explanation
Indices: 21906202--21906258 Score: 60
Period size: 5 Copynumber: 10.6 Consensus size: 5
21906192 CAATTTTTTT
* *
21906202 TTTCA TTTCA TTCCAA TTTCA TTTCCA TTTCA TTTCA TTTCCA TTCCCA
1 TTTCA TTTCA TTTC-A TTTCA TTT-CA TTTCA TTTCA TTT-CA TT-TCA
21906251 TTTCA TTT
1 TTTCA TTT
21906259 AAATTATATT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 27 0.61
6 17 0.39
ACGTcount: A:0.19, C:0.26, G:0.00, T:0.54
Consensus pattern (5 bp):
TTTCA
Found at i:21906222 original size:11 final size:10
Alignment explanation
Indices: 21906205--21906257 Score: 61
Period size: 11 Copynumber: 4.9 Consensus size: 10
21906195 TTTTTTTTTT
21906205 CATTTCATTC
1 CATTTCATTC
21906215 CAATTTCATTTC
1 C-ATTTCA-TTC
*
21906227 CATTTCATTT
1 CATTTCATTC
21906237 CATTTCCATTCC
1 CATTT-CATT-C
21906249 CATTTCATT
1 CATTTCATT
21906258 TAAATTATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
10 8 0.22
11 20 0.54
12 9 0.24
ACGTcount: A:0.21, C:0.28, G:0.00, T:0.51
Consensus pattern (10 bp):
CATTTCATTC
Found at i:21906258 original size:22 final size:22
Alignment explanation
Indices: 21906205--21906263 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
21906195 TTTTTTTTTT
* *
21906205 CATTTCATTCCAATTTCATTTC
1 CATTTCATTTCAATTTCATTCC
21906227 CATTTCATTTC-ATTTCCATTCC
1 CATTTCATTTCAATTT-CATTCC
*
21906249 CATTTCATTTAAATT
1 CATTTCATTTCAATT
21906264 ATATTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.12
22 25 0.78
23 3 0.09
ACGTcount: A:0.24, C:0.25, G:0.00, T:0.51
Consensus pattern (22 bp):
CATTTCATTTCAATTTCATTCC
Found at i:21906398 original size:27 final size:27
Alignment explanation
Indices: 21906367--21906423 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
21906357 CCATGCAAAT
21906367 TTAATTTTTCTT-CTCATTTCATTTAAA
1 TTAATTTTT-TTCCTCATTTCATTTAAA
21906394 TTAATTTTTTTCCTCATTTCATTTAAA
1 TTAATTTTTTTCCTCATTTCATTTAAA
21906421 TTA
1 TTA
21906424 TCTATCTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.26, C:0.14, G:0.00, T:0.60
Consensus pattern (27 bp):
TTAATTTTTTTCCTCATTTCATTTAAA
Found at i:21906418 original size:49 final size:47
Alignment explanation
Indices: 21906365--21906562 Score: 150
Period size: 46 Copynumber: 4.3 Consensus size: 47
21906355 TTCCATGCAA
*
21906365 ATTTAATTTTTCTTCTCATTTCATTTAAATTAATTTTTTTCCTCATTTC
1 ATTTAATTTATCTTCT-ATTTCATTTAAATTAA-TTTTTTCCTCATTTC
* * * *
21906414 ATTTAAATTATCTATCT-TTCCATAT-ATTTAATTTTTTCCTCATTTC
1 ATTTAATTTATCT-TCTATTTCATTTAAATTAATTTTTTCCTCATTTC
* *
21906460 ATTTAAATTTATCTT-TATTTCCTTATAAATTTAAATTTTTT-CTCAATTC
1 ATTT-AATTTATCTTCTATTTCATT-TAAA-TT-AATTTTTTCCTCATTTC
*
21906509 ATTT-ATATTAT-TT-T-TGTTCA-TT---TTAATTTTTTTCTCATTTC
1 ATTTAAT-TTATCTTCTAT-TTCATTTAAATTAATTTTTTCCTCATTTC
*
21906550 ATTTAAATTATCT
1 ATTTAATTTATCT
21906563 ATCTTTCTAT
Statistics
Matches: 123, Mismatches: 14, Indels: 31
0.73 0.08 0.18
Matches are distributed among these distances:
40 8 0.07
41 17 0.14
42 2 0.02
45 2 0.02
46 26 0.21
47 22 0.18
48 11 0.09
49 24 0.20
50 11 0.09
ACGTcount: A:0.26, C:0.14, G:0.01, T:0.60
Consensus pattern (47 bp):
ATTTAATTTATCTTCTATTTCATTTAAATTAATTTTTTCCTCATTTC
Found at i:21906464 original size:95 final size:89
Alignment explanation
Indices: 21906365--21906593 Score: 214
Period size: 89 Copynumber: 2.5 Consensus size: 89
21906355 TTCCATGCAA
* * *
21906365 ATTTAATTTTTCTTCTCATTTCATT-TAAA-TTAATTTTTTTCCTCATTTCATTTAAATTATCTA
1 ATTTAATTTATCTT-T-ATTTCATTATAAATTTAAATTTTTT-CTCAATTCATTTAAATTAT-T-
21906428 TCTT-TCCATATATTTAATTTTTTCCTCATTTC
61 T-TTGTCC--AT-TTTAATTTTTTCCTCATTTC
* *
21906460 ATTTAAATTTATCTTTATTTCCTTATAAATTTAAATTTTTTCTCAATTCATTTATATTATTTTTG
1 ATTT-AATTTATCTTTATTTCATTATAAATTTAAATTTTTTCTCAATTCATTTAAATTATTTTTG
* *
21906525 TTCATTTTAATTTTTTTCTCATTTC
65 TCCATTTTAATTTTTTCCTCATTTC
* * * * * *
21906550 ATTTAAATTATCTATCTTTC-TATGTAATTTTCAATTTTTTCTCA
1 ATTTAATTTATCTTTATTTCAT-TATAAATTTAAATTTTTTCTCA
21906594 TACAATTTAT
Statistics
Matches: 116, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
88 1 0.01
89 32 0.28
90 23 0.20
91 2 0.02
92 2 0.02
93 3 0.03
94 8 0.07
95 26 0.22
96 19 0.16
ACGTcount: A:0.25, C:0.14, G:0.01, T:0.60
Consensus pattern (89 bp):
ATTTAATTTATCTTTATTTCATTATAAATTTAAATTTTTTCTCAATTCATTTAAATTATTTTTGT
CCATTTTAATTTTTTCCTCATTTC
Found at i:21906512 original size:21 final size:21
Alignment explanation
Indices: 21906488--21906558 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
21906478 TTCCTTATAA
21906488 ATTTAAATTTTTTCTCAATTC
1 ATTTAAATTTTTTCTCAATTC
* *
21906509 ATTTATATTATTTT-T--GTTC
1 ATTTAAATT-TTTTCTCAATTC
* *
21906528 ATTTTAATTTTTTTCTCATTTC
1 A-TTTAAATTTTTTCTCAATTC
21906550 ATTTAAATT
1 ATTTAAATT
21906559 ATCTATCTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
19 8 0.21
20 7 0.18
21 16 0.41
22 8 0.21
ACGTcount: A:0.25, C:0.10, G:0.01, T:0.63
Consensus pattern (21 bp):
ATTTAAATTTTTTCTCAATTC
Found at i:21906611 original size:89 final size:90
Alignment explanation
Indices: 21906440--21906612 Score: 226
Period size: 89 Copynumber: 1.9 Consensus size: 90
21906430 TTTCCATATA
*
21906440 TTTAATTTTTTCCTCATTTCATTTAAATTTATCTTTATTTCCTTATAAATTTAAATTTTTTCTCA
1 TTTAATTTTTTCCTCATTTCATTTAAATTTATCTATATTTCCTTATAAATTTAAATTTTTTCTCA
* *
21906505 ATTCATTTATATTATTTTTGTTCAT
66 ATACATTTATATAATTTTTGTTCAT
* * * * *
21906530 TTTAATTTTTTTCTCATTTCATTTAAA-TTATCTATCTTT-CTATGTAATTTTCAATTTTTTCTC
1 TTTAATTTTTTCCTCATTTCATTTAAATTTATCTATATTTCCT-TATAAATTTAAATTTTTTCTC
*
21906593 -ATACAATTTATCTAATTTTT
65 AATAC-ATTTATATAATTTTT
21906613 CATATATTTA
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
88 5 0.07
89 41 0.57
90 26 0.36
ACGTcount: A:0.25, C:0.13, G:0.01, T:0.61
Consensus pattern (90 bp):
TTTAATTTTTTCCTCATTTCATTTAAATTTATCTATATTTCCTTATAAATTTAAATTTTTTCTCA
ATACATTTATATAATTTTTGTTCAT
Found at i:21909761 original size:46 final size:46
Alignment explanation
Indices: 21909675--21909783 Score: 128
Period size: 46 Copynumber: 2.4 Consensus size: 46
21909665 GAAAAAGGCC
* * *
21909675 CCTGGTGCCGGCCATTAGAACGCCAACACCAAATTTTTTTTTAGTA
1 CCTGGTGCCGGCCATTAGAACGCCAACACAAAAATATTTTTTAGTA
* * * * *
21909721 CCTGGTGCTGGCCGTTAGAAGGCCTACACAAAAATATTTTTTTGTA
1 CCTGGTGCCGGCCATTAGAACGCCAACACAAAAATATTTTTTAGTA
* *
21909767 TCTGGTACCGGCCATTA
1 CCTGGTGCCGGCCATTA
21909784 AAAAGCTAGC
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (46 bp):
CCTGGTGCCGGCCATTAGAACGCCAACACAAAAATATTTTTTAGTA
Found at i:21910166 original size:55 final size:55
Alignment explanation
Indices: 21909756--21910187 Score: 381
Period size: 55 Copynumber: 7.8 Consensus size: 55
21909746 ACACAAAAAT
* * * * * * *
21909756 ATTTTTTT-GTATCTGGTACCGGCCATTAAAAAGCTAGCACCTAAAAAAAATTGA
1 ATTTTTTTCGTACCTAGTGCCGGCCATTAGAAGGCCAGAACCTAAAAAAAATTGA
* * * * *
21909810 ATTTTTTTCGTACATGAG-GTCGACCATTAGAAGGCCAGCACCT-AAAAAATTTGAA
1 ATTTTTTTCGTACCT-AGTGCCGGCCATTAGAAGGCCAGAACCTAAAAAAAATTG-A
* * * *
21909865 TATATTTTTTCGTACTTAGTGCTGGCCATTAGAAGGCCAGGACCTAAAAAAATTTGAA
1 -AT-TTTTTTCGTACCTAGTGCCGGCCATTAGAAGGCCAGAACCTAAAAAAAATTG-A
* * * * * *
21909923 TATTTTTTTTCGCACCTGGTGCCGGCCATTAGAAGGCTAGCACCTAACAAAATTTGA
1 -A-TTTTTTTCGTACCTAGTGCCGGCCATTAGAAGGCCAGAACCTAAAAAAAATTGA
* * * * *
21909980 ATTTTTTTTCATACCTTGTGTCGGCCATTAGAAGGCCA-ACACTTAAAAAAATTTGA
1 A-TTTTTTTCGTACCTAGTGCCGGCCATTAGAAGGCCAGA-ACCTAAAAAAAATTGA
* * * * *
21910036 ATTTTTTTCGTACCTAGTGCCTGTCATTAAAAGGCTAGCACCTAAAAAAAATTGA
1 ATTTTTTTCGTACCTAGTGCCGGCCATTAGAAGGCCAGAACCTAAAAAAAATTGA
* **
21910091 ATTTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCAGAACAAAAAAAAAATT-A
1 ATTTTTTTCGTACCTAGTGCCGGCCATTAGAAGGCCAGAACCTAAAAAAAATTGA
* * *
21910145 ATTTTTTTAC-TAGTCTAGTGCCAGTCATTAGAAGGCCAGAACC
1 ATTTTTTT-CGTA-CCTAGTGCCGGCCATTAGAAGGCCAGAACC
21910188 AATTTTTTTT
Statistics
Matches: 313, Mismatches: 53, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
54 28 0.09
55 138 0.44
56 53 0.17
57 34 0.11
58 59 0.19
59 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (55 bp):
ATTTTTTTCGTACCTAGTGCCGGCCATTAGAAGGCCAGAACCTAAAAAAAATTGA
Found at i:21912325 original size:21 final size:21
Alignment explanation
Indices: 21912299--21912340 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
21912289 GCAATTTTGT
21912299 AATTAAA-TGGAAATTAAAACA
1 AATTAAAGT-GAAATTAAAACA
21912320 AATTAAAGTGAAATTAAAACA
1 AATTAAAGTGAAATTAAAACA
21912341 CTTTAATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (21 bp):
AATTAAAGTGAAATTAAAACA
Found at i:21913254 original size:25 final size:24
Alignment explanation
Indices: 21913193--21913258 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 24
21913183 ACCGGTATTC
* * *
21913193 AGCTCGTATGAGCTTACCATTTAT
1 AGCTCGTATGAGCATACCATTCAG
* *
21913217 AGCTCATAAGAGCATACCGATTCAG
1 AGCTCGTATGAGCATACC-ATTCAG
21913242 AGCTCGTATGAGCATAC
1 AGCTCGTATGAGCATAC
21913259 ATGTACAAGA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 15 0.44
25 19 0.56
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (24 bp):
AGCTCGTATGAGCATACCATTCAG
Found at i:21915022 original size:25 final size:25
Alignment explanation
Indices: 21914994--21915072 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 25
21914984 TAGCTCTTAT
* *
21914994 GAGCATCCCGTTATATGGCTCTCAC
1 GAGCATCCAGATATATGGCTCTCAC
* *
21915019 GAGCTTCCAGATATTTGGCTCTCAC
1 GAGCATCCAGATATATGGCTCTCAC
* * * * *
21915044 GAGCTTTCTGATATTTGGCTCTCAT
1 GAGCATCCAGATATATGGCTCTCAC
21915069 GAGC
1 GAGC
21915073 TTCCCAATTA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.33
Consensus pattern (25 bp):
GAGCATCCAGATATATGGCTCTCAC
Found at i:21915073 original size:25 final size:25
Alignment explanation
Indices: 21915009--21915076 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
21914999 TCCCGTTATA
21915009 TGGCTCTCACGAGCTTCCAGATATT
1 TGGCTCTCACGAGCTTCCAGATATT
* *
21915034 TGGCTCTCACGAGCTTTCTGATATT
1 TGGCTCTCACGAGCTTCCAGATATT
*
21915059 TGGCTCTCATGAGCTTCC
1 TGGCTCTCACGAGCTTCC
21915077 CAATTAATGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.16, C:0.28, G:0.21, T:0.35
Consensus pattern (25 bp):
TGGCTCTCACGAGCTTCCAGATATT
Found at i:21919385 original size:45 final size:45
Alignment explanation
Indices: 21919288--21919398 Score: 141
Period size: 45 Copynumber: 2.5 Consensus size: 45
21919278 CGACTACTGT
* * *
21919288 TACTGTTACCATTACTGTTACCGATTCAATACTTTGTGTGTCAAA
1 TACTGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTCAAA
* **
21919333 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTCAAA
* * *
21919378 TATTGTTACTGTTACTATTAC
1 TACTGTTACCGTTACTGTTAC
21919399 TATTACCATT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.42
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTCAAA
Found at i:21920471 original size:21 final size:21
Alignment explanation
Indices: 21920445--21920661 Score: 130
Period size: 21 Copynumber: 10.3 Consensus size: 21
21920435 CCAGAGGCTG
21920445 AACAGAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
*
21920466 AACAGAAGATCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * * *
21920487 AACGGAAACCCATAAGGGTTA
1 AACAGAAGCTCATAAGAGCTA
* *
21920508 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
* ** * * *
21920529 AATAGAAAATCATAAAAGTTG
1 AACAGAAGCTCATAAGAGCTA
* * * *
21920550 AACAAAAGCTTAAAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
* * * * *
21920571 AACGGAAACTCATAAAAGTTG
1 AACAGAAGCTCATAAGAGCTA
* * *
21920592 AACAAAAGCTCAAAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
* * *
21920613 AAC-GAAAACTCATATGAGTTA
1 AACAG-AAGCTCATAAGAGCTA
* * *
21920634 AATAGAAGCTGAAAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
21920655 AACAGAA
1 AACAGAA
21920662 AGTAAAACAT
Statistics
Matches: 140, Mismatches: 54, Indels: 4
0.71 0.27 0.02
Matches are distributed among these distances:
21 139 0.99
22 1 0.01
ACGTcount: A:0.50, C:0.15, G:0.20, T:0.16
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:21920510 original size:42 final size:42
Alignment explanation
Indices: 21920441--21920662 Score: 210
Period size: 42 Copynumber: 5.3 Consensus size: 42
21920431 AAGCCCAGAG
* * * * *
21920441 GCTGAACAGAAGCTCATAAGAGCTAAACAGAAGATCATAAGA
1 GCTGAACGGAAACTCATAAGAGTTAAACAGAAGCTCAAAAGA
* * * **
21920483 GCTAAACGGAAACCCATAAGGGTTAAACAGAAGCTCGTAAGA
1 GCTGAACGGAAACTCATAAGAGTTAAACAGAAGCTCAAAAGA
** * * * * *
21920525 GCTGAATAGAAAATCATAAAAGTTGAACAAAAGCTTAAAAGA
1 GCTGAACGGAAACTCATAAGAGTTAAACAGAAGCTCAAAAGA
* * *
21920567 GCTGAACGGAAACTCATAAAAGTTGAACAAAAGCTCAAAAGA
1 GCTGAACGGAAACTCATAAGAGTTAAACAGAAGCTCAAAAGA
* * * *
21920609 GCTGAACGAAAACTCATATGAGTTAAATAGAAGCTGAAAAGA
1 GCTGAACGGAAACTCATAAGAGTTAAACAGAAGCTCAAAAGA
* *
21920651 GCTAAACAGAAA
1 GCTGAACGGAAA
21920663 GTAAAACATG
Statistics
Matches: 146, Mismatches: 34, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 146 1.00
ACGTcount: A:0.49, C:0.15, G:0.20, T:0.16
Consensus pattern (42 bp):
GCTGAACGGAAACTCATAAGAGTTAAACAGAAGCTCAAAAGA
Found at i:21924060 original size:13 final size:14
Alignment explanation
Indices: 21924042--21924070 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
21924032 TCATCATAGT
21924042 AATATTTTATA-AA
1 AATATTTTATATAA
21924055 AATATTTTATATAA
1 AATATTTTATATAA
21924069 AA
1 AA
21924071 ATGCCCTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AATATTTTATATAA
Found at i:21926116 original size:35 final size:35
Alignment explanation
Indices: 21926054--21926144 Score: 125
Period size: 35 Copynumber: 2.6 Consensus size: 35
21926044 TCATATGGAA
*
21926054 ATATAATCTT-TAATGATATGCAATCTTAGATATG
1 ATATAATCTTAGAATGATATGCAATCTTAGATATG
21926088 ATATAATCTTAGATATGAT-TGCAATCTTAGATATG
1 ATATAATCTTAGA-ATGATATGCAATCTTAGATATG
21926123 ATATGCAATCTTAGAA-GATATG
1 ATAT--AATCTTAGAATGATATG
21926145 ATTTTGTAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
34 10 0.20
35 24 0.47
36 8 0.16
37 9 0.18
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (35 bp):
ATATAATCTTAGAATGATATGCAATCTTAGATATG
Found at i:21926144 original size:17 final size:19
Alignment explanation
Indices: 21926066--21926137 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
21926056 ATAATCTTTA
21926066 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
21926085 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
21926102 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
21926120 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
21926138 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
16 1 0.02
17 15 0.30
18 15 0.30
19 19 0.38
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:21926163 original size:22 final size:22
Alignment explanation
Indices: 21926066--21926160 Score: 79
Period size: 19 Copynumber: 4.8 Consensus size: 22
21926056 ATAATCTTTA
21926066 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
21926085 ATGATAT--AATCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
21926102 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
21926120 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
21926142 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
21926161 GATTTAATTT
Statistics
Matches: 63, Mismatches: 2, Indels: 18
0.76 0.02 0.22
Matches are distributed among these distances:
16 1 0.02
17 13 0.21
18 13 0.21
19 16 0.25
22 8 0.13
23 12 0.19
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:21930454 original size:39 final size:39
Alignment explanation
Indices: 21930409--21930637 Score: 395
Period size: 39 Copynumber: 5.9 Consensus size: 39
21930399 AAGCAAGACA
*
21930409 CTGGAAATGTATCCGGGCTAAAGACCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
21930448 CTGGAAATGCATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
21930487 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
21930526 CTGGAAATGTATCTGGGCTAAAGACCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
21930565 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
21930604 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCT
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCT
21930638 CCGCAGGCTT
Statistics
Matches: 180, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 180 1.00
ACGTcount: A:0.23, C:0.24, G:0.31, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:21940214 original size:90 final size:88
Alignment explanation
Indices: 21940058--21940252 Score: 266
Period size: 90 Copynumber: 2.2 Consensus size: 88
21940048 CGAAGAAACA
** * *
21940058 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGT
* *
21940123 TTTCACATCGAAGTAGATCCAAGAT
66 TTACAC-T-GAAGCAGATCCAAGAT
* *
21940148 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAGCAGATCTAACCTTCACG-TG
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC-CGATG
*
21940212 TTTACACTGAAGCAGATCTAAGAT
65 TTTACACTGAAGCAGATCCAAGAT
*
21940236 TATTTGGCATCTCTGTA
1 GATTTGGCATCTCTGTA
21940253 CTGTCAGAGA
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
88 30 0.32
89 1 0.01
90 62 0.66
91 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (88 bp):
GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGT
TTACACTGAAGCAGATCCAAGAT
Found at i:21940300 original size:221 final size:220
Alignment explanation
Indices: 21939750--21940416 Score: 921
Period size: 220 Copynumber: 3.1 Consensus size: 220
21939740 GCTAAAGCAT
* * * * * * ** *
21939750 AGCAGATTTGACCTTCAGGTGTTTTCGCTGAAGCGGATCCAAGATGATTTAACATCTCTGTATTG
1 AGCAGATCTGACCTTCACGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTG
* *
21939815 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAAAGCAGATCGAAGACA
66 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACA
* *
21939880 TAGCAGATCTAACCTTTGGATGTCTTCACATCGAAGTAGATCCAAGATGATTTGGCATC-CTTGC
131 TAGCAGATCTAACCTTCGGATGT-TTCACATCGAAGTAGATCCAAGATGATTTGGCATCTC-TGT
* *** *
21939944 GTT-GACAAAGAGCATATCGAAGACAC
194 ATTAGACGGGGAGCAGATCGAAGACAC
* * * *
21939970 AACAGATTTGACCTTCACTTGTTTA-AGCTAAAGCAGATCTAAGATGATTTGGCATCTCTGTACT
1 AGCAGATCTGACCTTCACGTGTTTACA-CTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACT
21940034 GTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGAC
65 GTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGAC
21940099 ATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCTCTGT
130 ATAGCAGATCTAACCTTCGGATG-TTTCACATCGAAGTAGATCCAAGATGATTTGGCATCTCTGT
* *
21940164 ATTAGACGGGGAGTAGATCGAAGACAT
194 ATTAGACGGGGAGCAGATCGAAGACAC
* *
21940191 AGCAGATCTAACCTTCACGTGTTTACACTGAAGCAGATCTAAGATTATTTGGCATCTCTGTACTG
1 AGCAGATCTGACCTTCACGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTG
* *
21940256 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAACAGATTGAAGACA
66 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACA
* * *
21940321 TAGCAGATCTGACCTTC--A----T----T-GAAGCAGATCAAAGATGATTTGGCATCTCTGTAT
131 TAGCAGATCTAACCTTCGGATGTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCTCTGTAT
21940375 TAGACGGGGAGCAGATCGAAGACAC
196 TAGACGGGGAGCAGATCGAAGACAC
21940400 AGCAGATCTGACCTTCA
1 AGCAGATCTGACCTTCA
21940417 TTGAAGCAGA
Statistics
Matches: 406, Mismatches: 36, Indels: 21
0.88 0.08 0.05
Matches are distributed among these distances:
209 71 0.17
210 1 0.00
214 1 0.00
219 1 0.00
220 176 0.43
221 155 0.38
222 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (220 bp):
AGCAGATCTGACCTTCACGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTG
TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACA
TAGCAGATCTAACCTTCGGATGTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCTCTGTAT
TAGACGGGGAGCAGATCGAAGACAC
Found at i:21940408 original size:78 final size:78
Alignment explanation
Indices: 21940279--21940573 Score: 457
Period size: 78 Copynumber: 3.8 Consensus size: 78
21940269 CGAAGAAACA
** * * * *
21940279 GATTTGGCATCTCCATATTCGACGGAGAACAGATTGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
21940344 GCAGATCAAAGAT
66 GCAGATCCAAGAT
*
21940357 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
21940422 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
21940435 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATTGAAGACATAACAGAT-TAGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
21940499 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
*
21940513 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
21940574 GTGTTTACAT
Statistics
Matches: 198, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
77 1 0.01
78 196 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:21940713 original size:44 final size:45
Alignment explanation
Indices: 21940513--21940786 Score: 250
Period size: 45 Copynumber: 6.1 Consensus size: 45
21940503 GATCCAAGAT
* *
21940513 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
21940560 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * * * *
21940605 GATTTGGCATTTCTGTATTAGACGAGGAGCAAATTGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
21940650 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
21940694 GATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGAAGATAATA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * * *
21940739 GATTTGACGTCTTTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
21940784 GAT
1 GAT
21940787 ATCGCCTTCC
Statistics
Matches: 183, Mismatches: 37, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
43 1 0.01
44 44 0.24
45 108 0.59
46 4 0.02
47 21 0.11
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:21940713 original size:89 final size:90
Alignment explanation
Indices: 21940587--21940786 Score: 251
Period size: 89 Copynumber: 2.2 Consensus size: 90
21940577 TTTACATCGA
* * * * *
21940587 AGCAGATCCAAGAT-GACAGATTTGGCATTTCTGTATTAGACGAGGAGCAAATTGGAGATAACAG
1 AGCAGATCAAAGATAG-CAGATTTGGCATCTCTATATTAGACGAGGAGCAAATCGAAGATAACAG
*
21940651 ATTTGGCATCTCTGTATTAGACGGGG
65 ATTTGACATCTCTGTATTAGACGGGG
** * * * *
21940677 AGCAGATTGAAGA-AGCAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGAAGATAATAGA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTATATTAGACGAGGAGCAAATCGAAGATAACAGA
* *
21940741 TTTGACGTCTTTGTATTAGACGGGG
66 TTTGACATCTCTGTATTAGACGGGG
21940766 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
21940787 ATCGCCTTCC
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
89 74 0.80
90 19 0.20
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.26
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATCTCTATATTAGACGAGGAGCAAATCGAAGATAACAGA
TTTGACATCTCTGTATTAGACGGGG
Found at i:21941166 original size:17 final size:18
Alignment explanation
Indices: 21941146--21941190 Score: 65
Period size: 17 Copynumber: 2.5 Consensus size: 18
21941136 AATGATATAA
*
21941146 AATCTTAGATATGGTA-C
1 AATCTTAGATATGATAGC
21941163 AATCTTAGATATGATATGC
1 AATCTTAGATATGATA-GC
21941182 AATCTTAGA
1 AATCTTAGA
21941191 AGATATGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 15 0.60
19 10 0.40
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (18 bp):
AATCTTAGATATGATAGC
Found at i:21942642 original size:19 final size:19
Alignment explanation
Indices: 21942596--21942654 Score: 86
Period size: 17 Copynumber: 3.1 Consensus size: 19
21942586 ATCTTTAAGA
21942596 ATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
21942615 ATA--CAATCTTAGATATG
1 ATATGCAATCTTAGATATG
21942632 ATATGCAATCTTGAAGATATG
1 ATATGCAATCTT--AGATATG
21942653 AT
1 AT
21942655 CCTGTAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
17 17 0.47
19 10 0.28
21 9 0.25
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
ATATGCAATCTTAGATATG
Found at i:21946509 original size:8 final size:8
Alignment explanation
Indices: 21946495--21946559 Score: 53
Period size: 8 Copynumber: 7.9 Consensus size: 8
21946485 CTATTTCAAA
21946495 AAAAAAAGG
1 AAAAAAA-G
21946504 AAAAAAAG
1 AAAAAAAG
21946512 AAAAGAAAAG
1 -AAA-AAAAG
*
21946522 GAAAAAA-
1 AAAAAAAG
* *
21946529 AATAAAAT
1 AAAAAAAG
21946537 AAAAAGAA-
1 AAAAA-AAG
21946545 AAAAAAAG
1 AAAAAAAG
21946553 AAAAAAA
1 AAAAAAA
21946560 ATGGAGAGGC
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
7 7 0.15
8 21 0.45
9 14 0.30
10 5 0.11
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:21946509 original size:10 final size:9
Alignment explanation
Indices: 21946494--21946560 Score: 71
Period size: 9 Copynumber: 6.9 Consensus size: 9
21946484 TCTATTTCAA
21946494 AAAAAAAAG
1 AAAAAAAAG
*
21946503 GAAAAAAAG
1 AAAAAAAAG
21946512 AAAAGAAAAGG
1 AAAA-AAAA-G
*
21946523 AAAAAAAATA
1 AAAAAAAA-G
21946533 AAATAAAAAG
1 AAA-AAAAAG
21946543 AAAAAAAAAG
1 -AAAAAAAAG
21946553 AAAAAAAA
1 AAAAAAAA
21946561 TGGAGAGGCC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
9 19 0.39
10 17 0.35
11 13 0.27
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:21946515 original size:5 final size:5
Alignment explanation
Indices: 21946493--21946560 Score: 52
Period size: 5 Copynumber: 13.8 Consensus size: 5
21946483 TTCTATTTCA
* * * *
21946493 AAAAA AAAAG GAAA- AAAAG AAAAG AAAAGG AAAA- AAAAT AAAATA AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA-G AAAAG AAAAG AAAA-G AAAAG
*
21946543 AAAAA AAAAG AAAA- AAAA
1 AAAAG AAAAG AAAAG AAAA
21946561 TGGAGAGGCC
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
4 11 0.21
5 32 0.62
6 9 0.17
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:21946520 original size:19 final size:19
Alignment explanation
Indices: 21946493--21946560 Score: 82
Period size: 21 Copynumber: 3.4 Consensus size: 19
21946483 TTCTATTTCA
21946493 AAAAAAAAAGGAAAAAAAG
1 AAAAAAAAAGGAAAAAAAG
* *
21946512 AAAAGAAAAGGAAAAAAAAT
1 AAAAAAAAAGG-AAAAAAAG
*
21946532 AAAATAAAAAGAAAAAAAAAG
1 AAAA-AAAAAG-GAAAAAAAG
21946553 AAAAAAAA
1 AAAAAAAA
21946561 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
19 10 0.24
20 15 0.37
21 16 0.39
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (19 bp):
AAAAAAAAAGGAAAAAAAG
Found at i:21947648 original size:84 final size:84
Alignment explanation
Indices: 21947507--21948460 Score: 1377
Period size: 84 Copynumber: 11.4 Consensus size: 84
21947497 CAAAATTCAG
*
21947507 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
21947572 GTGGAACAGATCAAAGACT
66 GTGGAGCAGATCGAAGACT
21947591 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
21947656 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
21947675 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
21947740 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
21947759 CACCTTAATCCCCTGAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTTCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
21947824 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
21947843 TGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCTTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
21947908 GTAGAGCAGATTGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
21947927 CGCCTTAATCCCCTAAGCAGTAAGGTAACAGG-----TTCGCAGATATTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
21947987 GCGGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
* * * *
21948009 CACCTTAATCCCCTAAGTAGTAGGGTAACAAGTTAAATTTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
21948074 GTGGAGCAGATCGAAGAC-
66 GTGGAGCAGATCGAAGACT
** *
21948092 CTGCCTTAATCTTCTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGT
1 C-GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGT
*
21948152 AGCGGAGCAGATCGACGACGACT
65 AGTGGAGCAGATCGA--A-GACT
* *
21948175 CGCCTTAATCCCCTAAGCAGTAGAGTAACAGGTTAAATTTGCAGATCTTATCTCCTTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
21948240 GTGG-GCAGATCGAAGACC
66 GTGGAGCAGATCGAAGACT
* *
21948258 CGCCTTAATCCCTTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
21948318 GCGGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
* *
21948340 CTCCTTAATCCCCTAAGCAGTAGAGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
21948405 GTGGAGCAGATCGAAGA-T
66 GTGGAGCAGATCGAAGACT
* * *
21948423 GCGCCTTAACCCCCTAAGTAGTAGGATAACAGGTTAAA
1 -CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
21948461 GTATAGCAGA
Statistics
Matches: 780, Mismatches: 62, Indels: 56
0.87 0.07 0.06
Matches are distributed among these distances:
78 29 0.04
79 84 0.11
81 3 0.00
82 95 0.12
83 36 0.05
84 415 0.53
85 2 0.00
86 9 0.01
87 107 0.14
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Done.