Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 71 of 352
Found at i:22241845 original size:29 final size:28
Alignment explanation
Indices: 22241805--22241914 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 28
22241795 ATTATACTAT
22241805 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATACTATATTA
* ** *
22241834 TTTATATATATATATTTTTTAC-ATGTTA
1 TTTATGTATATAT-TTTAATACTATATTA
22241862 TCTTATGTATATATTTTAAT--TATATTA
1 T-TTATGTATATATTTTAATACTATATTA
* *
22241889 TGTATGTAT-T-TTTT-ACACTATATTA
1 TTTATGTATATATTTTAATACTATATTA
22241914 T
1 T
22241915 GTACATATTT
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
23 1 0.02
24 4 0.06
25 9 0.14
26 7 0.11
27 6 0.09
28 10 0.15
29 29 0.44
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (28 bp):
TTTATGTATATATTTTAATACTATATTA
Found at i:22241849 original size:14 final size:14
Alignment explanation
Indices: 22241786--22241850 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
22241776 CTATATTACG
*
22241786 TATATATATAT-TA
1 TATATATTTATATA
*
22241799 TACTAT-TTTATGTA
1 TA-TATATTTATATA
*
22241813 TATATCTTTA-ATA
1 TATATATTTATATA
22241826 CTATATTATTTATATA
1 -TATA-TATTTATATA
22241842 TATATATTT
1 TATATATTT
22241851 TTTACATGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
13 11 0.26
14 20 0.47
15 9 0.21
16 3 0.07
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (14 bp):
TATATATTTATATA
Found at i:22241915 original size:25 final size:24
Alignment explanation
Indices: 22241865--22241951 Score: 70
Period size: 24 Copynumber: 3.5 Consensus size: 24
22241855 CATGTTATCT
*
22241865 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
22241891 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
** * *
22241916 TACATA-TTTTTAA-TATCATCACG
1 TATGTATTTTTTAACTAT-ATTATG
*
22241939 TATTTATTTTTTA
1 TATGTATTTTTTA
22241952 TATATGTACA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
22 3 0.06
23 9 0.18
24 17 0.33
25 15 0.29
26 7 0.14
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.56
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:22241923 original size:47 final size:49
Alignment explanation
Indices: 22241846--22241951 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 49
22241836 TATATATATA
* * * * *
22241846 TATTTTTTACATGTTATCTTATGTATATA-TTTTAATTAT-ATTATGTATG
1 TATTTTTTACA-GCTATATTATGTACATATTTTTAA-TATCATCACGTATG
*
22241895 TATTTTTTACA-CTATATTATGTACATATTTTTAATATCATCACGTATT
1 TATTTTTTACAGCTATATTATGTACATATTTTTAATATCATCACGTATG
22241943 TATTTTTTA
1 TATTTTTTA
22241952 TATATGTACA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
47 16 0.33
48 22 0.45
49 11 0.22
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.58
Consensus pattern (49 bp):
TATTTTTTACAGCTATATTATGTACATATTTTTAATATCATCACGTATG
Found at i:22242105 original size:16 final size:15
Alignment explanation
Indices: 22242081--22242115 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
22242071 TAATTATTAT
22242081 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
22242097 TATTTTAATATTTTA
1 TATTCTAATATTTTA
22242112 TATT
1 TATT
22242116 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:22248221 original size:44 final size:44
Alignment explanation
Indices: 22248164--22248278 Score: 180
Period size: 44 Copynumber: 2.6 Consensus size: 44
22248154 AAAAAAGGGT
22248164 GATCAAGGTGAAAACCTGAAAAGGGCGTCTTGATTAACAAAAAA
1 GATCAAGGTGAAAACCTGAAAAGGGCGTCTTGATTAACAAAAAA
* *
22248208 GATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATTAACATAAAA
1 GATCAAGGTGAAAACCTGAAAAGGGCGTCTTGATTAACAAAAAA
*
22248252 GAT-TAGGATGAAAACCTG-AAAGGGCGT
1 GATCAAGG-TGAAAACCTGAAAAGGGCGT
22248279 TCTAATGAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
43 12 0.18
44 54 0.82
ACGTcount: A:0.43, C:0.14, G:0.25, T:0.18
Consensus pattern (44 bp):
GATCAAGGTGAAAACCTGAAAAGGGCGTCTTGATTAACAAAAAA
Found at i:22249383 original size:73 final size:73
Alignment explanation
Indices: 22249145--22249385 Score: 383
Period size: 73 Copynumber: 3.3 Consensus size: 73
22249135 AATTTCCATT
* *
22249145 TTTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
22249210 GCTGAGGTA
65 GCTGAGGTA
* * * *
22249219 ATTTCAATTTATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACG
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
*
22249284 CAGAGGTA
66 CTGAGGTA
* *
22249292 TTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
22249357 CTGAGGTA
66 CTGAGGTA
*
22249365 TTTTCAATTTTTGTTTTTCAA
1 TTTTCAATTTATGTTTTTCAA
22249386 TTTTTGCCTT
Statistics
Matches: 151, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
73 135 0.89
74 16 0.11
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (73 bp):
TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
CTGAGGTA
Found at i:22249384 original size:14 final size:14
Alignment explanation
Indices: 22249365--22249391 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22249355 CGCTGAGGTA
22249365 TTTTCAATTTTTGT
1 TTTTCAATTTTTGT
22249379 TTTTCAATTTTTG
1 TTTTCAATTTTTG
22249392 CCTTACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.07, T:0.70
Consensus pattern (14 bp):
TTTTCAATTTTTGT
Found at i:22249664 original size:77 final size:76
Alignment explanation
Indices: 22249496--22249795 Score: 328
Period size: 77 Copynumber: 4.0 Consensus size: 76
22249486 TTTATGTTTA
* * *
22249496 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA--AGACGCTGAGGTAATTTC-AAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAT
*
22249558 T-TTTGTTTGTC
66 TCTTT-TTTATC
* * *
22249569 --AAAAATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATTTTTTCAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAT
22249632 TCTATTTTTATC
66 TCT-TTTTTATC
* * *
22249644 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAT
**
22249709 TCTGCTTT-TC
66 TCTTTTTTATC
* * * * **
22249719 AAAAGAATCAACTCATATTGCGATAGGTGAGTTGAGTCTCGGGCCACACG-TCGAGGTCCTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTCA
22249783 AATTCTATTTTTA
63 AATTCT-TTTTTA
22249796 ATTTCTTTTT
Statistics
Matches: 191, Mismatches: 24, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
71 37 0.19
73 14 0.07
74 4 0.02
75 48 0.25
76 6 0.03
77 79 0.41
78 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAT
TCTTTTTTATC
Found at i:22249674 original size:148 final size:152
Alignment explanation
Indices: 22249496--22249795 Score: 405
Period size: 148 Copynumber: 2.0 Consensus size: 152
22249486 TTTATGTTTA
* *
22249496 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-AAGACGCTGAGGTAATTTCAATTT
1 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACACACTGAGGTAATTTCAATTT
*
22249560 TTG-TTTGTC-AAA-AATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACG-CTGAG
66 CTGCTTT-TCAAAAGAATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGTC-GAG
**
22249620 ATTTTTTCAAATTCTATTTTTATC
129 ATCCTTTCAAATTCTATTTTTATC
* * *
22249644 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GAACACACTGAGGTAATTTCAATT
* * * *
22249709 TCTGCTTTTCAAAAGAATCAACTCATATTGCGATAGGTGAGTTGAGTCTCGGGCCACACGTCGAG
65 TCTGCTTTTCAAAAGAATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGTCGAG
*
22249774 GTCCTTTCAAATTCTATTTTTA
129 ATCCTTTCAAATTCTATTTTTA
22249796 ATTTCTTTTT
Statistics
Matches: 131, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
148 39 0.30
150 24 0.18
151 6 0.05
152 34 0.26
154 27 0.21
155 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (152 bp):
AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAACACACTGAGGTAATTTCAATTT
CTGCTTTTCAAAAGAATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGTCGAGAT
CCTTTCAAATTCTATTTTTATC
Found at i:22249760 original size:75 final size:75
Alignment explanation
Indices: 22249479--22249767 Score: 322
Period size: 75 Copynumber: 3.9 Consensus size: 75
22249469 AATTTTTGTT
* * * * *
22249479 TTTTTAATTTATGTTTA--AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC--AAGA
1 TTTTCAATTTCTGTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
*
22249540 CGCTGAGGTA
66 CACTGAGGTA
* * * * *
22249550 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
* * *
22249613 CGCTGAGATT
66 CACTGAGGTA
* *
22249623 TTTTCAAATTCTATTTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGA
1 TTTTC-AATT-TCTGTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGA
22249688 CACACTGAGGTA
64 CACACTGAGGTA
* * * *
22249700 TTTTCAATTTCTGCTTT-TCAAAAGAATCAACTCATATTGCGATAGGTGAGTTGAGTCTCGGGCC
1 TTTTCAATTTCTG-TTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
22249764 ACAC
65 ACAC
22249768 GTCGAGGTCC
Statistics
Matches: 184, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
71 49 0.27
73 14 0.08
74 4 0.02
75 56 0.30
76 7 0.04
77 54 0.29
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (75 bp):
TTTTCAATTTCTGTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
CACTGAGGTA
Found at i:22250005 original size:416 final size:404
Alignment explanation
Indices: 22249165--22250176 Score: 1138
Period size: 416 Copynumber: 2.5 Consensus size: 404
22249155 ATGCTTTTCA
*
22249165 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC-AATT-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAATTC
* * * * *
22249228 TATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCAGAGGTAT
66 TATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAT
* *
22249293 TTTTAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
131 TTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACA
* * * *
22249357 CTGAGGTATTTTCAATTTTTGTTTTTCAATTTTTGCCTTACAAATTCTACTTTTCAAATCAACTC
196 CTGAGGTACTTTCAAATTCTATTTTTCAATTTTTGCCTTACAAATTCTACTTTTCAAATCAACTC
* * * * * *
22249422 ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTTGTTTTTTTAAT
261 ACATTGCGAGAAGTGAGTTGAACCTCA-GACACGCTGAGGTATTTTCAA-TTTTCTATTTTCAAT
* *
22249487 TTATGTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCTGAGGTAAT
324 TTATGTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACACTGAGGTAAT
* **
22249552 TTCAATTTTTGTTTGTC
389 TTCAA-TTTTGATCATC
* * *
22249569 AAAAATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATTTTTTCAAATTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAATTC
*
22249634 TAT-TTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGG
66 TATATTTT-TC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGG
* * *
22249698 TATTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGATAGGTGAGTTGAGTCTC-GGG
128 TATTTTCAATTTCTGTTTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG
* ** *** *
22249762 CCACACGTCGAGGTCCTTTCAAATTCTATTTTT-AATTTCTT-TTTTTTTAATT-TATGTGTTTC
192 -CACAC-T-GAGGTACTTTCAAATTCTATTTTTCAATTT-TTGCCTTACAAATTCTA-CT-TTTC
* * * *
22249824 AAAAAAATCAGCTCACATTGCGAGAAGTGAGTTGAACCTCA-ATACGCTGAGGTGTTTTCCA-TT
251 ----AAATCAACTCACATTGCGAGAAGTGAGTTGAACCTCAGACACGCTGAGGTATTTTCAATTT
*
22249887 TCTATTTTCAATTTCTGTTTTAATTCAAAAAATCAACTCATATTGCGAG-AGATGAGTTGAACCT
312 TCTATTTTCAATTTATG-TTTAA---AAAAAATCAACTCATATTGCGAGAAG-TGAGTTGAACCT
* *
22249951 CAAGTCACATTGAGGTATTTTCAA-TTT-ATCATC
372 CAAG--ACACTGAGGTAATTTCAATTTTGATCATC
* * * * *
22249984 AAAAGATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACTCGTTGAGGTATTTTCAATTT
1 AAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA-AT
*
22250049 CTGCTCAATCTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC---ACAT
64 -T-CT--A--TA--TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
* *
22250111 GCTGAGGTGTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC
121 GCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
22250176 T
186 T
22250177 TGGCTTACAC
Statistics
Matches: 515, Mismatches: 58, Indels: 55
0.82 0.09 0.09
Matches are distributed among these distances:
404 55 0.11
405 8 0.02
406 4 0.01
408 67 0.13
409 6 0.01
410 39 0.08
411 13 0.03
412 40 0.08
413 5 0.01
414 17 0.03
415 9 0.02
416 124 0.24
417 1 0.00
418 16 0.03
419 33 0.06
420 32 0.06
421 1 0.00
423 39 0.08
425 2 0.00
426 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (404 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAATTC
TATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAT
TTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACA
CTGAGGTACTTTCAAATTCTATTTTTCAATTTTTGCCTTACAAATTCTACTTTTCAAATCAACTC
ACATTGCGAGAAGTGAGTTGAACCTCAGACACGCTGAGGTATTTTCAATTTTCTATTTTCAATTT
ATGTTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACACTGAGGTAATTT
CAATTTTGATCATC
Found at i:22250014 original size:71 final size:71
Alignment explanation
Indices: 22249911--22250048 Score: 231
Period size: 71 Copynumber: 1.9 Consensus size: 71
22249901 CTGTTTTAAT
*
22249911 TCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
22249976 TTATCA
66 TTATCA
* * * *
22249982 TCAAAAGATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACTCGTTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
22250047 TT
66 TT
22250049 CTGCTCAATC
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (71 bp):
TCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
TTATCA
Found at i:22250141 original size:155 final size:154
Alignment explanation
Indices: 22249805--22250362 Score: 441
Period size: 155 Copynumber: 3.6 Consensus size: 154
22249795 AATTTCTTTT
* * * * * * *
22249805 TTTTTAATTTATGTGTTTCAAAAAAATCAGCTCACATTGCGAGAAGTGAGTTGAACCTC-A-ATA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
* *
22249868 CGCTGAGGT-GTTTTCCATTTCTATTTTCAATTTCTGTTTTAATTCAAAAAATCAACTCATATTG
66 CGCTGAGGTAGTTTTCAATTTC---TGTCAA-TT-TG-TTT--TTC-AAAAATCAACTCATATTG
* * * *
22249932 CGAGAGATGAGTTGAACCTCA-AGTCACATTGAGGTA
122 CGAGAGGTGAGTTGAGCCTCACA-T-GC--TGAGGTG
* ** * *
22249968 TTTTCAA-TT-T-ATCATC-AAAAGATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACT
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
*
22250029 CGTTGAGGTA-TTTTCAATTTCTGCTCAATCTATGTTTTTCAAAAATCAACTCATATTGCGAGAG
66 CGCTGAGGTAGTTTTCAATTTCTG-TCAAT-T-TGTTTTTCAAAAATCAACTCATATTGCGAGAG
22250093 GTGAGTTGAGCCTCACATGCTGAGGTG
128 GTGAGTTGAGCCTCACATGCTGAGGTG
* * **
22250120 TTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGC-TT
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC-T--CAAG
* *** *
22250183 ACACGCTGAGGTATTTTTCAATTTCTG----TTTG--TCAAAAAAATCAACTCATATCGCGAGAG
63 ACACGCTGAGGTAGTTTTCAATTTCTGTCAATTTGTTTTTCAAAAATCAACTCATATTGCGAGAG
* *
22250242 GTAAGTTGAGCCTCGGGTCACACGCTGAGGTG
128 GTGAGTTGAG-C-C---TCACATGCTGAGGTG
* * * * *
22250274 TTTTCAACTTCTTTTTTTCAAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
* *
22250339 CGTTAAGGTAGTTTT-AATTTCTGT
66 CGCTGAGGTAGTTTTCAATTTCTGT
22250363 TCATCAAAAA
Statistics
Matches: 330, Mismatches: 44, Indels: 52
0.77 0.10 0.12
Matches are distributed among these distances:
149 33 0.10
150 1 0.00
151 3 0.01
152 23 0.07
153 18 0.05
154 34 0.10
155 110 0.33
156 5 0.02
157 11 0.03
158 19 0.06
159 42 0.13
160 3 0.01
161 20 0.06
162 2 0.01
163 6 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (154 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
CGCTGAGGTAGTTTTCAATTTCTGTCAATTTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTG
AGTTGAGCCTCACATGCTGAGGTG
Found at i:22250278 original size:77 final size:75
Alignment explanation
Indices: 22250061--22250440 Score: 443
Period size: 77 Copynumber: 5.1 Consensus size: 75
22250051 GCTCAATCTA
*
22250061 TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC----ACATGCTGAGGTGT
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTACACGCTGAGGTGT
22250121 TTTCAATTTC
66 TTTCAATTTC
* * *
22250131 TGTTTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTTACACGCTGAGGTA
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-GTACACGCTGAGGT-
*
22250196 TTTTTCAATTTC
64 GTTTTCAATTTC
* * *
22250208 TGTTTGTCAAAAAAATCAACTCATATCGCGAGAGGTAAGTTGAGCCTCGGGTCACACGCTGAGGT
1 TGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT-ACACGCTGAGGT
*
22250273 GTTTTCAACTTC
64 GTTTTCAATTTC
* * * * *
22250285 TTTTTTTCAAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGTTAAGGTA
1 TGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTACACGCTGAGGT-
22250349 GTTTT-AATTTC
64 GTTTTCAATTTC
** * ** * *
22250360 TGTTCATCAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCGGG-GCACGCTGAGGTAT
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTACACGCTGAGGTGT
**
22250424 TTTCAATTAA
66 TTTCAATTTC
22250434 TGTTTTT
1 TGTTTTT
22250441 TCAATTTATG
Statistics
Matches: 262, Mismatches: 37, Indels: 18
0.83 0.12 0.06
Matches are distributed among these distances:
70 8 0.03
71 36 0.14
73 4 0.02
74 55 0.21
75 20 0.08
76 16 0.06
77 74 0.28
78 49 0.19
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (75 bp):
TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTACACGCTGAGGTGT
TTTCAATTTC
Found at i:22250573 original size:87 final size:88
Alignment explanation
Indices: 22250369--22250666 Score: 283
Period size: 88 Copynumber: 3.4 Consensus size: 88
22250359 CTGTTCATCA
* * *
22250369 AAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCGGGGCAC-GCTGAGGTATTTTCAATTA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGGTCACTGCTGAGGTATTTTCAA-TA
* *
22250433 ATGTTTTTTCAATTTATGCTTTTC
65 ATCTTTTTACAATTTATGCTTTTC
* * * *
22250457 AAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTTGGGTCACATACCGAGGTATTTTCAA-A
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGGTCAC-TGCTGAGGTATTTTCAATA
22250521 ATCTGTTTTACAAATTT-TG-TTTT-
65 ATCT-TTTTAC-AATTTATGCTTTTC
* * * *
22250544 AAAAATCAACTTATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT-
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGGTCAC-TGCTGAGGTATTTTCAATA
* *
22250608 TTCTATTTT-TAATGTCTA-G-TTTT-
65 ATCT-TTTTACAAT-T-TATGCTTTTC
** *
22250631 AAAGAGCCAATTCATATTGCGAGAAATGAGTTGAGC
1 AAA-AATCAACTCATATTGCGAGAAATGAGTTGAGC
22250667 TCAGGATCAC
Statistics
Matches: 175, Mismatches: 26, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
85 3 0.02
86 1 0.01
87 70 0.40
88 75 0.43
89 7 0.04
90 19 0.11
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTGGGTCACTGCTGAGGTATTTTCAATAA
TCTTTTTACAATTTATGCTTTTC
Found at i:22251354 original size:30 final size:30
Alignment explanation
Indices: 22251318--22251446 Score: 240
Period size: 30 Copynumber: 4.3 Consensus size: 30
22251308 CTAGCTTTTG
22251318 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
22251348 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
22251378 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
22251408 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
22251438 CCACCACCA
1 CCACCACCA
22251447 CTTCTACCTA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 95 1.00
ACGTcount: A:0.26, C:0.50, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:22251952 original size:24 final size:23
Alignment explanation
Indices: 22251904--22251955 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
22251894 TTTTTTTTGT
*
22251904 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
22251927 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
22251951 TATTA
1 TATTA
22251956 GGTATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:22252009 original size:25 final size:25
Alignment explanation
Indices: 22251981--22252110 Score: 95
Period size: 25 Copynumber: 5.2 Consensus size: 25
22251971 CTATATTACG
*
22251981 TATATATATTATACTATTTTATGTA
1 TATATATATTATACTATATTATGTA
* *
22252006 TATATCT-TTAATACTATATTATTTA
1 TATATATATT-ATACTATATTATGTA
* *
22252031 TATATATATT-TAC-ATGTTATCTTA
1 TATATATATTATACTATATTAT-GTA
* * *
22252055 TGTATATATTTTAATTATATTATGTA
1 TATATATATTAT-ACTATATTATGTA
* * * *
22252081 TGTATTTTTTACACTATATTATGTA
1 TATATATATTATACTATATTATGTA
*
22252106 CATAT
1 TATAT
22252111 TTTTAATATT
Statistics
Matches: 83, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
23 6 0.07
24 17 0.20
25 41 0.49
26 13 0.16
27 6 0.07
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (25 bp):
TATATATATTATACTATATTATGTA
Found at i:22252072 original size:22 final size:22
Alignment explanation
Indices: 22252047--22252154 Score: 71
Period size: 22 Copynumber: 4.9 Consensus size: 22
22252037 TATTTACATG
*
22252047 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
22252069 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
22252094 CTATATTATGTACATATTTTTAA
1 TTATATTATGTATATA-TTTTAA
* * *
22252117 -TATTATCACGTATTTATTTT--
1 TTA-TATTATGTATATATTTTAA
*
22252137 TTATA-TATGTACATATTT
1 TTATATTATGTATATATTT
22252155 ATGTAGTATT
Statistics
Matches: 67, Mismatches: 13, Indels: 15
0.71 0.14 0.16
Matches are distributed among these distances:
19 9 0.13
20 2 0.03
21 2 0.03
22 17 0.25
23 12 0.18
24 13 0.19
25 12 0.18
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:22252121 original size:20 final size:20
Alignment explanation
Indices: 22252096--22252154 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
22252086 TTTTTACACT
22252096 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
22252116 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
22252139 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
22252155 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:22252288 original size:16 final size:15
Alignment explanation
Indices: 22252267--22252301 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
22252257 TAATTATTAT
22252267 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
22252283 TATTCTAATATTTTA
1 TATTCTAATATTTTA
22252298 TATT
1 TATT
22252302 ATTCACATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:22253268 original size:25 final size:25
Alignment explanation
Indices: 22253232--22253350 Score: 102
Period size: 25 Copynumber: 4.8 Consensus size: 25
22253222 GACACACAAC
*
22253232 AGCTCTCTTGAGCTTCCTGATACTT
1 AGCTCTCATGAGCTTCCTGATACTT
*
22253257 GGCTCTCATGAGCTT-CTCGATACTT
1 AGCTCTCATGAGCTTCCT-GATACTT
* * * *
22253282 TGCTTTCATGAGCTTCCCGATA-TAC
1 AGCTCTCATGAGCTTCCTGATACT-T
* *
22253307 AGCTCGT-ATGAGCTTCCCGTTACTT
1 AGCTC-TCATGAGCTTCCTGATACTT
22253332 AGCTCAT-ATGAGCTTCCTG
1 AGCTC-TCATGAGCTTCCTG
22253351 TTATATGGCT
Statistics
Matches: 77, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
24 3 0.04
25 71 0.92
26 3 0.04
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (25 bp):
AGCTCTCATGAGCTTCCTGATACTT
Found at i:22253361 original size:25 final size:25
Alignment explanation
Indices: 22253289--22253361 Score: 85
Period size: 25 Copynumber: 2.9 Consensus size: 25
22253279 CTTTGCTTTC
* * *
22253289 ATGAGCTTCCCGATATACAGCTCGT
1 ATGAGCTTCCCGTTATATAGCTCAT
22253314 ATGAGCTTCCCGTTACT-TAGCTCAT
1 ATGAGCTTCCCGTTA-TATAGCTCAT
* *
22253339 ATGAGCTTCCTGTTATATGGCTC
1 ATGAGCTTCCCGTTATATAGCTC
22253362 GGAAGAGCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 1 0.02
25 39 0.95
26 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATATAGCTCAT
Found at i:22253362 original size:50 final size:50
Alignment explanation
Indices: 22253240--22253374 Score: 132
Period size: 50 Copynumber: 2.7 Consensus size: 50
22253230 ACAGCTCTCT
* * *
22253240 TGAGCTTCCTGATACT-TGGCTC-TCATGAGCTTCTCGATACTTTGCTTTCA
1 TGAGCTTCCTGATA-TATGGCTCGT-ATGAGCTTCCCGATACTTAGCTATCA
* ** *
22253290 TGAGCTTCCCGATATACAGCTCGTATGAGCTTCCCGTTACTTAGCTCAT-A
1 TGAGCTTCCTGATATATGGCTCGTATGAGCTTCCCGATACTTAGCT-ATCA
* * *
22253340 TGAGCTTCCTGTTATATGGCTCGGAAGAGCTTCCC
1 TGAGCTTCCTGATATATGGCTCGTATGAGCTTCCC
22253375 ATTTACATGC
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
49 1 0.01
50 66 0.96
51 2 0.03
ACGTcount: A:0.19, C:0.27, G:0.20, T:0.35
Consensus pattern (50 bp):
TGAGCTTCCTGATATATGGCTCGTATGAGCTTCCCGATACTTAGCTATCA
Found at i:22265252 original size:21 final size:21
Alignment explanation
Indices: 22265226--22265266 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22265216 ATCTGCTCAA
* *
22265226 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
22265247 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
22265267 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:22269704 original size:41 final size:41
Alignment explanation
Indices: 22269655--22269748 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
22269645 ATGACTTTAT
* * **
22269655 TAGG-AACATATTATTATTCCATGGGACCACTTTATGTGCA
1 TAGGTAACATATTATTATTCCATCGGACAACTCCATGTGCA
*
22269695 TAGGTAACATATTATTATTTCATCGGACAACTCCATGTGCA
1 TAGGTAACATATTATTATTCCATCGGACAACTCCATGTGCA
*
22269736 TAGGTAATATATT
1 TAGGTAACATATT
22269749 CACGGGATTG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 4 0.09
41 43 0.91
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (41 bp):
TAGGTAACATATTATTATTCCATCGGACAACTCCATGTGCA
Found at i:22272585 original size:16 final size:16
Alignment explanation
Indices: 22272566--22272601 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
22272556 AGATTGTTGC
*
22272566 TATTTATTATATATAT
1 TATTTATTAAATATAT
*
22272582 TATTTATTAAATATTT
1 TATTTATTAAATATAT
22272598 TATT
1 TATT
22272602 GAGTTTATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TATTTATTAAATATAT
Found at i:22276163 original size:131 final size:131
Alignment explanation
Indices: 22275996--22276251 Score: 440
Period size: 131 Copynumber: 2.0 Consensus size: 131
22275986 TTTAGAGAAC
* * * *
22275996 ATGAGTGAATTTCTAAAGGGATATTCAATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGA
1 ATGAGTAAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGA
22276061 TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAAAGA
66 TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAAAGA
22276126 T
131 T
* *
22276127 ATGAGTAAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGTAACCCAGCACGA
1 ATGAGTAAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGA
* *
22276192 TAGGGCACGATTCCCCGAATTGCCGAACATCGAACATTGCCTTCGTTTTAAAGAATTTTT
66 TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTT
22276252 GAATGAATAA
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 117 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (131 bp):
ATGAGTAAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGA
TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAAAGA
T
Found at i:22276605 original size:13 final size:14
Alignment explanation
Indices: 22276582--22276613 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
22276572 AAACAAAACA
22276582 ATACACACAATAAT
1 ATACACACAATAAT
22276596 ATAC-CACAATAAT
1 ATACACACAATAAT
22276609 ATACA
1 ATACA
22276614 AAGCCTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (14 bp):
ATACACACAATAAT
Found at i:22278174 original size:46 final size:46
Alignment explanation
Indices: 22278114--22278547 Score: 576
Period size: 46 Copynumber: 10.0 Consensus size: 46
22278104 TTTGACATGA
* * * * * *
22278114 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
22278160 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
22278206 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
22278252 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
22278290 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
22278336 TGCCATGGTATCTTTCAACCATGGTCTCACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
22278382 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
22278420 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
22278466 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
22278504 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
22278548 AGAGCACACT
Statistics
Matches: 348, Mismatches: 15, Indels: 50
0.84 0.04 0.12
Matches are distributed among these distances:
38 102 0.29
40 9 0.03
41 3 0.01
43 3 0.01
44 9 0.03
45 4 0.01
46 218 0.63
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:22278345 original size:84 final size:78
Alignment explanation
Indices: 22278246--22278534 Score: 375
Period size: 84 Copynumber: 3.5 Consensus size: 78
22278236 ACATTTCATA
22278246 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA-C-TCAGGTTGCCATGGTATCTTTCAAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACATCATCAGGTTGCCATGGTATCTTTCAAC
22278309 CATGGTCTTACAC
66 CATGGTCTTACAC
*
22278322 ATTTCATATTAGGTTGCCATGGTATCTTTCAACCATGGTCTCACACATTTCATATCAGGTTGCCA
1 ---TC-----AGGTTGCCATGGTATCTTTCAACCATGGTCT--TACA--TC--ATCAGGTTGCCA
22278387 TGGTATCTTTCAACCATGGTCTTACAC
52 TGGTATCTTTCAACCATGGTCTTACAC
22278414 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA--TC--ATCAGGTTGCCATGGTATCT
22278479 TTCAACCATGGTCTTACAC
60 TTCAACCATGGTCTTACAC
22278498 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
22278535 CATTTCATAT
Statistics
Matches: 193, Mismatches: 2, Indels: 27
0.87 0.01 0.12
Matches are distributed among these distances:
79 2 0.01
82 3 0.02
84 144 0.75
86 3 0.02
89 3 0.02
92 38 0.20
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (78 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACATCATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACAC
Found at i:22278355 original size:130 final size:130
Alignment explanation
Indices: 22278158--22278535 Score: 646
Period size: 130 Copynumber: 3.0 Consensus size: 130
22278148 TTTCTGTCAT
*** *
22278158 GTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
22278223 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTCAG
66 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTCAG
*
22278288 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
*
22278353 ACCATGGTCTCACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTCAG
66 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTCAG
22278418 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
22278483 ACCATGGTCTT--ACA---C---TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
66 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
22278536 ATTTCATATC
Statistics
Matches: 240, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
122 38 0.16
125 1 0.00
128 3 0.01
130 198 0.82
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (130 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTCAG
Found at i:22278535 original size:84 final size:84
Alignment explanation
Indices: 22278332--22278547 Score: 423
Period size: 84 Copynumber: 2.6 Consensus size: 84
22278322 ATTTCATATT
*
22278332 AGGTTGCCATGGTATCTTTCAACCATGGTCTCACACATTTCATATCAGGTTGCCATGGTATCTTT
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
22278397 CAACCATGGTCTTACACTC
66 CAACCATGGTCTTACACTC
22278416 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
22278481 CAACCATGGTCTTACACTC
66 CAACCATGGTCTTACACTC
22278500 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
22278548 AGAGCACACT
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 131 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (84 bp):
AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
CAACCATGGTCTTACACTC
Found at i:22282748 original size:7 final size:7
Alignment explanation
Indices: 22282738--22282763 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
22282728 AGATTATTGA
22282738 TTTTTAT
1 TTTTTAT
22282745 TTTTTAT
1 TTTTTAT
22282752 TTTTTAT
1 TTTTTAT
22282759 TTTTT
1 TTTTT
22282764 CACCAATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:22283820 original size:30 final size:30
Alignment explanation
Indices: 22283786--22283854 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
22283776 CTAGCATTTG
*
22283786 CCACCACCAATTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
22283816 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
22283846 CCACCACCA
1 CCACCACCA
22283855 CTTGTACCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.26, C:0.49, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:22284371 original size:24 final size:23
Alignment explanation
Indices: 22284323--22284374 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
22284313 CTTTTTTTGT
*
22284323 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
22284346 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
22284370 TATTA
1 TATTA
22284375 GGTATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:22284450 original size:29 final size:26
Alignment explanation
Indices: 22284417--22284532 Score: 66
Period size: 22 Copynumber: 4.5 Consensus size: 26
22284407 ATTATACTAT
22284417 TTTATGTATATATCTTCAATACTATATTA
1 TTTATGTATATATCTTC--TAC-ATATTA
* * * *
22284446 TTTATATATATTTTTTCTACATGTTA
1 TTTATGTATATATCTTCTACATATTA
22284472 TCTTATGTATATAT-TT-T--A-ATTA
1 T-TTATGTATATATCTTCTACATATTA
* *
22284494 TATTATGTATATATTTTTTACACTA-TA
1 T-TTATGTATATATCTTCTACA-TATTA
*
22284521 -TTATGTACATAT
1 TTTATGTATATAT
22284533 TTTTTTATAT
Statistics
Matches: 71, Mismatches: 9, Indels: 18
0.72 0.09 0.18
Matches are distributed among these distances:
22 16 0.23
23 3 0.04
24 1 0.01
25 12 0.17
26 9 0.13
27 15 0.21
28 1 0.01
29 14 0.20
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (26 bp):
TTTATGTATATATCTTCTACATATTA
Found at i:22284499 original size:22 final size:23
Alignment explanation
Indices: 22284469--22284535 Score: 82
Period size: 22 Copynumber: 2.9 Consensus size: 23
22284459 TTTCTACATG
*
22284469 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
22284491 TTATATTATGTATATATTTTTTACA
1 TTATATTATGTATATA--TTTTACA
* *
22284516 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
22284536 TTTATATCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
22 15 0.38
23 4 0.10
24 5 0.13
25 15 0.38
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:22284499 original size:27 final size:27
Alignment explanation
Indices: 22284417--22284499 Score: 71
Period size: 27 Copynumber: 3.0 Consensus size: 27
22284407 ATTATACTAT
*
22284417 TTTATGTATATATCTTCAATACTATATTA
1 TTTATGTATATAT-TTTAATA-TATATTA
* ** * *
22284446 TTTATATATAT-TTTTTCTACATGTTA
1 TTTATGTATATATTTTAATATATATTA
22284472 TCTTATGTATATATTTTAAT-TATATTA
1 T-TTATGTATATATTTTAATATATATTA
22284499 T
1 T
22284500 GTATATATTT
Statistics
Matches: 41, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
26 6 0.15
27 19 0.46
28 6 0.15
29 10 0.24
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (27 bp):
TTTATGTATATATTTTAATATATATTA
Found at i:22284519 original size:78 final size:81
Alignment explanation
Indices: 22284399--22284571 Score: 192
Period size: 78 Copynumber: 2.2 Consensus size: 81
22284389 TCTATATTAC
* * * * * *
22284399 GTATATATATTATACTATTTTATGTATATATCTTCAATACTATATTATTTATATATATTTTTTCT
1 GTATATATTTTATACTATATTATGTATATATCTTCAACACTATATTATGTACATAT-TTTTTTAT
*
22284464 A-C-ATGTTAT-CTTAT
65 ATCTATGTTATACATAT
* * **
22284478 GTATATATTTTA-ATTATATTATGTATATATTTTTTACACTATATTATGTACATATTTTTTTATA
1 GTATATATTTTATACTATATTATGTATATATCTTCAACACTATATTATGTACATATTTTTTTATA
*
22284542 TCTATTTTATACATAT
66 TCTATGTTATACATAT
*
22284558 GTATATATTATATA
1 GTATATATTTTATA
22284572 TATCTTAACA
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
77 8 0.10
78 36 0.47
79 17 0.22
80 15 0.19
81 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (81 bp):
GTATATATTTTATACTATATTATGTATATATCTTCAACACTATATTATGTACATATTTTTTTATA
TCTATGTTATACATAT
Found at i:22284522 original size:14 final size:13
Alignment explanation
Indices: 22284502--22284557 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
22284492 TATATTATGT
22284502 ATATATTTTTTAC
1 ATATATTTTTTAC
* *
22284515 ACTATATTATGTAC
1 A-TATATTTTTTAC
*
22284529 ATAT-TTTTTTAT
1 ATATATTTTTTAC
* *
22284541 ATCTATTTTATAC
1 ATATATTTTTTAC
22284554 ATAT
1 ATAT
22284558 GTATATATTA
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
12 8 0.25
13 13 0.41
14 11 0.34
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (13 bp):
ATATATTTTTTAC
Found at i:22284526 original size:25 final size:25
Alignment explanation
Indices: 22284390--22284537 Score: 90
Period size: 25 Copynumber: 5.9 Consensus size: 25
22284380 ATTCTAAATT
* * *
22284390 CTATATTACGTATATA--TATTATA
1 CTATATTATGTATATATTTTTTACA
* * ** *
22284413 CTATTTTATGTATATATCTTCAATA
1 CTATATTATGTATATATTTTTTACA
*
22284438 CTATATTATTTATATATATTTTTTCTACA
1 CTATATTA--TGTATATA-TTTTT-TACA
* *
22284467 TGTTATCTTATGTATATA--TTTTA-A
1 --CTATATTATGTATATATTTTTTACA
*
22284491 TTATATTATGTATATATTTTTTACA
1 CTATATTATGTATATATTTTTTACA
*
22284516 CTATATTATGTACATATTTTTT
1 CTATATTATGTATATATTTTTT
22284538 TATATCTATT
Statistics
Matches: 97, Mismatches: 17, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
22 15 0.15
23 14 0.14
24 6 0.06
25 34 0.35
26 3 0.03
27 7 0.07
28 3 0.03
29 9 0.09
31 6 0.06
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (25 bp):
CTATATTATGTATATATTTTTTACA
Found at i:22284546 original size:27 final size:25
Alignment explanation
Indices: 22284480--22284551 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 25
22284470 TATCTTATGT
* *
22284480 ATATATTTTAAT-TATATTATGTAT
1 ATATTTTTTAATCTATATTATGTAC
22284504 ATATTTTTTACA-CTATATTATGTAC
1 ATATTTTTTA-ATCTATATTATGTAC
*
22284529 ATATTTTTTTATATCTATTTTAT
1 ATA-TTTTTTA-ATCTATATTAT
22284552 ACATATGTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
24 9 0.22
25 15 0.38
26 8 0.20
27 8 0.20
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.60
Consensus pattern (25 bp):
ATATTTTTTAATCTATATTATGTAC
Found at i:22284626 original size:25 final size:24
Alignment explanation
Indices: 22284598--22284653 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
22284588 GTTATATTTT
*
22284598 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
22284623 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
22284646 CACTATTA
1 CACTATTA
22284654 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:22296783 original size:14 final size:13
Alignment explanation
Indices: 22296759--22296797 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
22296749 CACGCCGAGG
22296759 TATTTTTAATTTC
1 TATTTTTAATTTC
22296772 TATTTTTCAATTTC
1 TATTTTT-AATTTC
**
22296786 TGCTTTTAATTT
1 TATTTTTAATTT
22296798 TTTTTTTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.21, C:0.10, G:0.03, T:0.67
Consensus pattern (13 bp):
TATTTTTAATTTC
Found at i:22296928 original size:95 final size:96
Alignment explanation
Indices: 22296708--22296979 Score: 341
Period size: 95 Copynumber: 2.8 Consensus size: 96
22296698 ATGATTTTCA
* * * * * *
22296708 AAAATCAACTCATATTGTGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTTTTAATTTCT
1 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCT
* ** * **
22296773 ATTTTTCAATTTCTGCTTTTAATTTTTTTTTT
66 -TTTTTCAATTTCTCCTTCAAATTCTGCTTTT
22296805 CAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA-GTATTTTCAATTT
1 --AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
22296869 CTTTTTTCAATTTTTCCTTACAAATTCTGCTTTT
64 CTTTTTTCAATTTCTCCTT-CAAATTCTGCTTTT
*
22296903 -AAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTC
1 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA-TTTC
*
22296967 GTTTTTTTAATTT
65 -TTTTTTCAATTT
22296980 ATGTTTCTAA
Statistics
Matches: 154, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
95 47 0.31
96 10 0.06
97 19 0.12
98 34 0.22
99 44 0.29
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (96 bp):
AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCT
TTTTTCAATTTCTCCTTCAAATTCTGCTTTT
Found at i:22297189 original size:75 final size:75
Alignment explanation
Indices: 22296970--22297579 Score: 758
Period size: 73 Copynumber: 8.3 Consensus size: 75
22296960 AATTTTCGTT
* * * * *
22296970 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
22297034 TGCTGAGGTA
66 CGCTGAGGTA
* * * * * *
22297044 ATTTCAATTTTTGTTTGTC--AAAACTCAACTCAAATTGCAAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* *
22297107 TGTTGAGGTA
66 CGCTGAGGTA
* *
22297117 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
22297182 CGCTGAGGTA
66 CGCTGAGGTA
* * *
22297192 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
22297255 CGTTGAGGTA
66 CGCTGAGGTA
* * * *
22297265 TTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
22297330 CGTTGAGGTA
66 CGCTGAGGTA
* * * *
22297340 TTTTCAATTTCTTTTTTTCAATAAAATCAACTCATATTG-GATAGGTGAGTTGAACCTCAAG--A
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
22297402 CGCTGAGGTA
66 CGCTGAGGTA
* * * *
22297412 ATTTCAATTTTTGTTTGT--AAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
22297475 CGTTGAGGTA
66 CGCTGAGGTA
* * * *
22297485 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTAAGTTGAACCTCAAG--
1 TTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
*
22297548 ACGCTGAGGTG
65 ACGCTGAGGTA
* *
22297559 TTTTCCATTTCTGTTCTTCAA
1 TTTTCAATTTCTGTTTTTCAA
22297580 TTTCTGTGTT
Statistics
Matches: 463, Mismatches: 62, Indels: 23
0.84 0.11 0.04
Matches are distributed among these distances:
70 17 0.04
71 20 0.04
72 24 0.05
73 155 0.33
74 60 0.13
75 149 0.32
76 38 0.08
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (75 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CGCTGAGGTA
Found at i:22297260 original size:148 final size:146
Alignment explanation
Indices: 22296970--22297573 Score: 770
Period size: 148 Copynumber: 4.1 Consensus size: 146
22296960 AATTTTCGTT
* * * * * *
22296970 TTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACAT
1 TTTTCAATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
* * * *
22297035 GCTGAGGTAATTTCAATTTTTGTTTGTC-AAAACTCAACTCAAATTGCAAGAGGTGAGTTGAGCC
66 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC
*
22297099 TCAAGACATGTTGAGGTA
131 TCAAGAC--GCTGAGGTA
* *
22297117 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
22297182 CGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
65 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
*
22297246 CTCAAGACACGTTGAGGTA
130 CTCAAG--ACGCTGAGGTA
* * *
22297265 TTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGT-TTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * * *
22297330 CGTTGAGGTATTTTCAATTTCTT-TTTTTCAATAAAATCAACTCATATTG-GATAGGTGAGTTGA
65 CGCTGAGGTAATTTCAATTT-TTGTTTGTCAA-AAAATCAACTCATATTGCGAGAGGTGAGTTGA
22297393 ACCTCAAGACGCTGAGGTA
128 ACCTCAAGACGCTGAGGTA
* * * *
22297412 ATTTCAATTTTTGTTTGT-AAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
* * * * *
22297476 GTTGAGGTATTTTCAATTTCTGTCTT-TCAAAAAAAATCAGCTCATATTGCGAGAGGTAAGTTGA
66 GCTGAGGTAATTTCAATTTTTGT-TTGTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
22297540 ACCTCAAGACGCTGAGGTG
128 ACCTCAAGACGCTGAGGTA
*
22297559 TTTTCCATTTCTGTT
1 TTTTCAATTTCTGTT
22297574 CTTCAATTTC
Statistics
Matches: 410, Mismatches: 35, Indels: 24
0.87 0.07 0.05
Matches are distributed among these distances:
144 1 0.00
145 65 0.16
146 20 0.05
147 81 0.20
148 198 0.48
149 26 0.06
150 19 0.05
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.34
Consensus pattern (146 bp):
TTTTCAATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC
TCAAGACGCTGAGGTA
Found at i:22297686 original size:15 final size:14
Alignment explanation
Indices: 22297650--22297682 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
22297640 CGCTGAGGTA
22297650 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
22297664 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
22297678 TTTTC
1 TTTTC
22297683 CAAAAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:22297688 original size:91 final size:90
Alignment explanation
Indices: 22297548--22298026 Score: 472
Period size: 91 Copynumber: 5.3 Consensus size: 90
22297538 GAACCTCAAG
* * * * * *
22297548 ACGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGC
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGC
*
22297613 GAGTGGTGAGTTGAGCCTTGACTCAC
66 GAGAGGTGAGTTGAGCCTTGA-TCAC
* * *
22297639 ACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTT-TGTTTTTCCAAAAAATCAACTTATATTG
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTG
* * * **
22297703 CGAGAGGTGAGTTCAACC-TCAAGAC
65 CGAGAGGTGAGTTGAGCCTTGATCAC
* * *
22297728 ACGCTGAGATATTTTCAATTTCTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATT
1 ACGCTGAGGTATTTTCAATTTC--TGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATT
* *
22297793 GCGAGAGGTGAGTTAAGCCTCAGATCAC
64 GCGAGAGGTGAGTTGAGCCT-TGATCAC
* * * * * *
22297821 ACGCCGAGGTATTTTCAATTGTTTTTTTTTCAATTTATGCTTTGC--AAAAATCAACTCATATTA
1 ACGCTGAGGTATTTTCAATT-TCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTG
*
22297884 CGAGAGGTGAGTTGAGCCTTGGGTCAC
65 CGAGAGGTGAGTTGAGCCTT-GATCAC
** * ** *
22297911 ATACCGAGGTATTTTCAAAATCTGTTTTACAAATTT-TG-TTTT---AAAAATCAACTCATATTG
1 ACGCTGAGGTATTTTCAATTTCTGTTTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTG
* *
22297971 CGAGAAGTGAGTTGAGCCTTGGCTCAC
65 CGAGAGGTGAGTTGAGCCTT-GATCAC
** *
22297998 GTGCTGAGCTATTTTCAATTTCTGTTTTT
1 ACGCTGAGGTATTTTCAATTTCTGTTTTT
22298027 AATGTCTAGT
Statistics
Matches: 325, Mismatches: 54, Indels: 22
0.81 0.13 0.05
Matches are distributed among these distances:
87 64 0.20
88 3 0.01
89 31 0.10
90 68 0.21
91 113 0.35
92 24 0.07
93 21 0.06
94 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (90 bp):
ACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTTGATCAC
Found at i:22297823 original size:182 final size:178
Alignment explanation
Indices: 22297485--22297896 Score: 492
Period size: 182 Copynumber: 2.3 Consensus size: 178
22297475 CGTTGAGGTA
* * * * *
22297485 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTAAGTTGAACCTCAAGAC
1 TTTTCAATTTATG-CTTTC-CAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAAGAC
* * * * *
22297550 GCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTGCGA
64 GCTGAGATATTTTCAATTTCTGTTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATATTGCGA
* * * *
22297615 GTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAAT-TCTGT
129 GAGGTGAGTTAAGCCTAGACTCACACGCCGAGGTATTTTCAAATGTCTGT
* *
22297664 TTTTCAAATTT-TGTTTTTCCAAAAAATCAACTTATATTGCGAGAGGTGAGTTCAACCTCAAGAC
1 TTTTC-AATTTATG-CTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAAG--
* *
22297728 ACGCTGAGATATTTTCAATTTCTTTTTTTTTCAATTTATGT-TTGTCAAAAAAATCAACTCATAT
62 ACGCTGAGATATTTTCAATTTC--TGTTCTTCAATTTATGTGTT-TCAAAAAAATCAACTCATAT
* * *
22297792 TGCGAGAGGTGAGTTAAGCCTCAGA-TCACACGCCGAGGTATTTTCAATTGTTTTT
124 TGCGAGAGGTGAGTTAAGCCT-AGACTCACACGCCGAGGTATTTTCAAATGTCTGT
* *
22297847 TTTTCAATTTATGCTTTGC-AAAAATCAACTCATATTACGAGAGGTGAGTT
1 TTTTCAATTTATGCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTT
22297897 GAGCCTTGGG
Statistics
Matches: 200, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
178 38 0.19
179 12 0.06
180 24 0.12
181 31 0.16
182 83 0.41
183 12 0.06
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (178 bp):
TTTTCAATTTATGCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAACCTCAAGACGC
TGAGATATTTTCAATTTCTGTTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATATTGCGAGA
GGTGAGTTAAGCCTAGACTCACACGCCGAGGTATTTTCAAATGTCTGT
Found at i:22298739 original size:30 final size:30
Alignment explanation
Indices: 22298705--22298802 Score: 160
Period size: 30 Copynumber: 3.3 Consensus size: 30
22298695 CTAGCCTTTG
* *
22298705 CCACCACCGACTCCACTAGCCACGCTTGCT
1 CCACCACCTACTCCACTAGCCACACTTGCT
22298735 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCTACTCCACTAGCCACACTTGCT
* *
22298765 TCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCTACTCCACTAGCCACACTTGCT
22298795 CCACCACC
1 CCACCACC
22298803 ACTTGTACCT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.22, C:0.50, G:0.08, T:0.19
Consensus pattern (30 bp):
CCACCACCTACTCCACTAGCCACACTTGCT
Found at i:22299303 original size:23 final size:24
Alignment explanation
Indices: 22299277--22299408 Score: 69
Period size: 23 Copynumber: 5.6 Consensus size: 24
22299267 CTTTTTTTGT
*
22299277 TATTA-TTATATTTCTTAATATTA
1 TATTACTTATATTTCTTAATACTA
* *
22299300 TATTA-TATATATATTCTT-TTAATA
1 TATTACT-TATAT-TTCTTAATACTA
** * *
22299324 TATTAGGTATA-TTCTAAATTCTA
1 TATTACTTATATTTCTTAATACTA
* * *
22299347 TATTACGTATATATATT-ATACTA
1 TATTACTTATATTTCTTAATACTA
* *
22299370 TTTTA-TGTATATATCTTTAATACTA
1 TATTACT-TATATTTC-TTAATACTA
*
22299395 TATTATTTATATTT
1 TATTACTTATATTT
22299409 TTTTTTCTAC
Statistics
Matches: 83, Mismatches: 17, Indels: 16
0.72 0.15 0.14
Matches are distributed among these distances:
22 4 0.05
23 35 0.42
24 22 0.27
25 21 0.25
26 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (24 bp):
TATTACTTATATTTCTTAATACTA
Found at i:22299382 original size:25 final size:25
Alignment explanation
Indices: 22299344--22299485 Score: 78
Period size: 25 Copynumber: 5.7 Consensus size: 25
22299334 ATTCTAAATT
*
22299344 CTATATTACGTATATATA-TT-ATA
1 CTATATTATGTATATATATTTAATA
* *
22299367 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTTAATA
* * * *
22299392 CTATATTATTTATATTTTTTTTTCTACATG
1 CTATATTATGTATA---TATATT-TA-ATA
* *
22299422 TTATCTTATGTATATAT-TTTAAT-
1 CTATATTATGTATATATATTTAATA
* * * *
22299445 -TATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATATTTAATA
*
22299469 CTATATTATGTACATAT
1 CTATATTATGTATATAT
22299486 TTTTTTATAT
Statistics
Matches: 91, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
22 14 0.15
23 19 0.21
24 4 0.04
25 31 0.34
26 2 0.02
27 2 0.02
28 4 0.04
29 2 0.02
30 13 0.14
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (25 bp):
CTATATTATGTATATATATTTAATA
Found at i:22299472 original size:77 final size:81
Alignment explanation
Indices: 22299353--22299524 Score: 190
Period size: 77 Copynumber: 2.2 Consensus size: 81
22299343 TCTATATTAC
* * * * * * *
22299353 GTATATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATATTTTTTTTTCTA
1 GTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTATA
*
22299418 -C-ATGTTAT-CTTAT
66 TCTATGTTATACATAT
* * * *
22299431 GTATATATTTTA-ATTATATTATGTATGTATTTTTTACACTATATTATGTACATATTTTTTTATA
1 GTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTATA
*
22299495 TCTATTTTATACATAT
66 TCTATGTTATACATAT
*
22299511 GTATATATTATATA
1 GTATATATTTTATA
22299525 TATCTTAACA
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
77 42 0.55
78 12 0.16
79 6 0.08
80 15 0.20
81 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (81 bp):
GTATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTATA
TCTATGTTATACATAT
Found at i:22299499 original size:27 final size:25
Alignment explanation
Indices: 22299433--22299504 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 25
22299423 TATCTTATGT
* *
22299433 ATATATTTTAAT-TATATTATGTAT
1 ATATTTTTTAATCTATATTATGTAC
*
22299457 GTATTTTTTACA-CTATATTATGTAC
1 ATATTTTTTA-ATCTATATTATGTAC
*
22299482 ATATTTTTTTATATCTATTTTAT
1 ATA-TTTTTTA-ATCTATATTAT
22299505 ACATATGTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
24 8 0.21
25 14 0.37
26 8 0.21
27 8 0.21
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.60
Consensus pattern (25 bp):
ATATTTTTTAATCTATATTATGTAC
Found at i:22299579 original size:25 final size:24
Alignment explanation
Indices: 22299551--22299606 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
22299541 GTTATATTTT
*
22299551 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
22299576 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
22299599 CACTATTA
1 CACTATTA
22299607 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:22304646 original size:17 final size:16
Alignment explanation
Indices: 22304614--22304647 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
22304604 TATATAAATA
*
22304614 ACAAATTTTAATTTTT
1 ACAAATTTTAAATTTT
22304630 ACAAATATTTAAATTTT
1 ACAAAT-TTTAAATTTT
22304647 A
1 A
22304648 AAAAAGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (16 bp):
ACAAATTTTAAATTTT
Found at i:22306912 original size:16 final size:17
Alignment explanation
Indices: 22306858--22306904 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
22306848 ATAGTATCTA
22306858 AAATAT-AATA-ATAATG
1 AAATATAAATAGATAA-G
22306874 AAAATATAAATAGATAAG
1 -AAATATAAATAGATAAG
22306892 AAATAT-AATAGAT
1 AAATATAAATAGAT
22306905 GAGTAATAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.25
17 12 0.43
18 5 0.18
19 4 0.14
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.28
Consensus pattern (17 bp):
AAATATAAATAGATAAG
Found at i:22306934 original size:3 final size:3
Alignment explanation
Indices: 22306926--22307351 Score: 102
Period size: 3 Copynumber: 141.0 Consensus size: 3
22306916 AAATGAAAAT
* * * * * *
22306926 ATA ATA ATA ATA ATA ATAA ATA A-A ATG ATA ACA GTG ATA TTA GTA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
22306971 ATA A-A ATA ATA GAAA ATA ATA GTA CATTA ATA ATA ATA TATG TTG ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA -A-TA ATA ATA ATA -ATA ATA ATA
* ** * * *
22307019 ACA ATA ATA ATA TATA A-A A-A ATA GGA ATA ATA AT- ATG GTA AAA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
22307062 AAA ATA AT- ATG TTA ATA AAA ATA ATG GTA GTA GTA ATA ATA ATTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
* * * *
22307107 ATG GTA ATA A-A ATA CATA ATA ATA ATA ATA ATA ATA CATT A-A ATT
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * * * * * **
22307152 ACA ATA ATA A-A GTA ATA ATA GTG ATA ATG ATA ATA ATA ATA GTA GCA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
22307199 A-A A-A ATA ATA ATA TTA GTG GTA ATA ATA GTA ATA ATA AAA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * ** * * *
22307245 ATA TTA GTA TTA ATA ATA ACGGC GTA GTA GAAA ATA ATA ATA ATA ATGGA
1 ATA ATA ATA ATA ATA ATA A--TA ATA ATA -ATA ATA ATA ATA ATA AT--A
* * ** * *
22307295 A-A ATA AAA ATA ATA GTA ATA ATA ATA GCA ATA ATAA ATA GTA CTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
*
22307340 ATA ACA ATA ATA
1 ATA ATA ATA ATA
22307352 CAAATGATTA
Statistics
Matches: 302, Mismatches: 96, Indels: 50
0.67 0.21 0.11
Matches are distributed among these distances:
2 22 0.07
3 253 0.84
4 23 0.08
5 4 0.01
ACGTcount: A:0.58, C:0.03, G:0.09, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:22307069 original size:17 final size:17
Alignment explanation
Indices: 22307047--22307086 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
22307037 AAATAGGAAT
22307047 AATAATATGGTAAAAAA
1 AATAATATGGTAAAAAA
* *
22307064 AATAATATGTTAATAAA
1 AATAATATGGTAAAAAA
22307081 AATAAT
1 AATAAT
22307087 GGTAGTAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (17 bp):
AATAATATGGTAAAAAA
Found at i:22307070 original size:23 final size:23
Alignment explanation
Indices: 22307016--22307063 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
22307006 ATATATGTTG
*
22307016 ATAACAATAATAATATATAAAAA
1 ATAAGAATAATAATATATAAAAA
* *
22307039 ATAGGAATAATAATATGGTAAAAA
1 ATAAGAATAATAATAT-ATAAAAA
22307063 A
1 A
22307064 AATAATATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (23 bp):
ATAAGAATAATAATATATAAAAA
Found at i:22307332 original size:28 final size:28
Alignment explanation
Indices: 22307277--22307351 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
22307267 CGTAGTAGAA
*
22307277 AATAATAATAATAATGGAAAATAAAAAT
1 AATAATAATAATAATAGAAAATAAAAAT
* *
22307305 AATAGTAATAATAATAGCAATAATAAATAGT
1 AATAATAATAATAATAG-AA-AATAAA-AAT
* *
22307336 ACTAATAACAATAATA
1 AATAATAATAATAATA
22307352 CAAATGATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
28 15 0.39
29 2 0.05
30 6 0.16
31 15 0.39
ACGTcount: A:0.63, C:0.04, G:0.07, T:0.27
Consensus pattern (28 bp):
AATAATAATAATAATAGAAAATAAAAAT
Found at i:22307616 original size:3 final size:3
Alignment explanation
Indices: 22307566--22307599 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
22307556 AACGATAGTT
*
22307566 ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
22307600 AATTTTTGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:22319637 original size:22 final size:22
Alignment explanation
Indices: 22319612--22319656 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
22319602 ACCATGCCAT
*
22319612 TTTTTGCATTACAGTATTACAC
1 TTTTTGCATCACAGTATTACAC
22319634 TTTTTGCATCACAGTATTACAC
1 TTTTTGCATCACAGTATTACAC
22319656 T
1 T
22319657 CTGCCGCCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.09, T:0.44
Consensus pattern (22 bp):
TTTTTGCATCACAGTATTACAC
Found at i:22324060 original size:5 final size:6
Alignment explanation
Indices: 22324043--22324085 Score: 68
Period size: 6 Copynumber: 6.8 Consensus size: 6
22324033 TATAAAATTA
22324043 TATTTT TATTTT TATTTT TATTTT TAGATTTT TATTTT TATTT
1 TATTTT TATTTT TATTTT TATTTT T--ATTTT TATTTT TATTT
22324086 ATTACATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 29 0.83
8 6 0.17
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:22324096 original size:32 final size:31
Alignment explanation
Indices: 22324043--22324108 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
22324033 TATAAAATTA
** *
22324043 TATTTTTATTTTTATTTTTATTTTTAGATTTT
1 TATTTTTATTTTTATCATTATTTGTA-ATTTT
22324075 TATTTTTATTTATTA-CATTATTTGTAATTTT
1 TATTTTTATTT-TTATCATTATTTGTAATTTT
22324106 TAT
1 TAT
22324109 GATTATGTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 8 0.27
32 19 0.63
33 3 0.10
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.73
Consensus pattern (31 bp):
TATTTTTATTTTTATCATTATTTGTAATTTT
Found at i:22329711 original size:28 final size:28
Alignment explanation
Indices: 22329675--22329731 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
22329665 ATGTAATTTG
* *
22329675 ACAAGAAAATTATCAAAGTACAAGTTTA
1 ACAAAAAAATTATCAAAATACAAGTTTA
22329703 ACAAAAAAATTATCAAAATACAAGTTTA
1 ACAAAAAAATTATCAAAATACAAGTTTA
22329731 A
1 A
22329732 GAGTTCAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.58, C:0.11, G:0.07, T:0.25
Consensus pattern (28 bp):
ACAAAAAAATTATCAAAATACAAGTTTA
Found at i:22329785 original size:16 final size:17
Alignment explanation
Indices: 22329745--22329791 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
22329735 TTCAAAAGGT
* *
22329745 AAAATAAAATTAAATGG
1 AAAATAAAAATAAATAG
*
22329762 AGAATAAAAAT-AATAG
1 AAAATAAAAATAAATAG
22329778 AAAATAAAAA-AAAT
1 AAAATAAAAATAAAT
22329792 CATTACTACC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (17 bp):
AAAATAAAAATAAATAG
Found at i:22333204 original size:4 final size:4
Alignment explanation
Indices: 22333195--22333266 Score: 144
Period size: 4 Copynumber: 18.0 Consensus size: 4
22333185 GATCTAAATG
22333195 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
22333243 GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT
22333267 AAGTTTGTGA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 68 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:22337342 original size:29 final size:31
Alignment explanation
Indices: 22337284--22337356 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 31
22337274 AAATTTCAAA
*
22337284 AAAAATTACATCTTAGACCCCTAAACTTTCCT
1 AAAAATTACATTTTAGACCCCTAAACTTT-CT
* *
22337316 -TAAATTACATTTTA-A-CCCTAAATTTTCT
1 AAAAATTACATTTTAGACCCCTAAACTTTCT
22337344 AAAAATTACATTT
1 AAAAATTACATTT
22337357 AGCCCCAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 2 0.06
29 21 0.58
30 1 0.03
31 12 0.33
ACGTcount: A:0.40, C:0.21, G:0.01, T:0.38
Consensus pattern (31 bp):
AAAAATTACATTTTAGACCCCTAAACTTTCT
Found at i:22337832 original size:18 final size:19
Alignment explanation
Indices: 22337809--22337849 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
22337799 TGTTTTCATA
*
22337809 TTTTCTTTCCTT-GGTTTT
1 TTTTCTTTCCTTAGATTTT
*
22337827 TTTTCTTTCTTTAGATTTT
1 TTTTCTTTCCTTAGATTTT
22337846 TTTT
1 TTTT
22337850 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.76
Consensus pattern (19 bp):
TTTTCTTTCCTTAGATTTT
Found at i:22348318 original size:15 final size:15
Alignment explanation
Indices: 22348298--22348327 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
22348288 AAATTGGTTA
22348298 AATACAGTGATCTAG
1 AATACAGTGATCTAG
22348313 AATACAGTGATCTAG
1 AATACAGTGATCTAG
22348328 TGGCAGAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (15 bp):
AATACAGTGATCTAG
Found at i:22350710 original size:68 final size:71
Alignment explanation
Indices: 22350599--22350821 Score: 283
Period size: 73 Copynumber: 3.1 Consensus size: 71
22350589 TGATGTTTTT
22350599 ATTTCTG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTC-AGACACGCTGAG
1 ATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
*
22350661 GTAATTCA
64 GTATTTCA
* ** * * *
22350669 ATTTCTGTTTTC-AAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCGGGTCACGCCGAGAT
1 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT
22350733 ATTTCA
66 ATTTCA
* *
22350739 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
1 ATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
22350804 GTATTTTCA
64 GTA-TTTCA
*
22350813 ATTTTTGTT
1 ATTTCTGTT
22350822 CAATTTATGT
Statistics
Matches: 130, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
68 32 0.25
69 3 0.02
70 33 0.25
71 4 0.03
73 46 0.35
74 12 0.09
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (71 bp):
ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT
ATTTCA
Found at i:22350916 original size:75 final size:75
Alignment explanation
Indices: 22350599--22351545 Score: 1156
Period size: 75 Copynumber: 12.5 Consensus size: 75
22350589 TGATGTTTTT
** *
22350599 ATTTCTG--TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTC-AGACACGCTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
*
22350660 GGTA-ATTCA
66 GGTATTTTCA
** ** * **
22350669 ATTTCTGT-TTTC---AAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCGGGTCACGCCGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
*
22350730 GATA-TTTCA
66 GGTATTTTCA
* **
22350739 ATTTCTAT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
22350803 GGTATTTTCA
66 GGTATTTTCA
22350813 ATTTTTGTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
1 A----T-TTC------TGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
**
22350878 AGACACGTTGAGGTATTTAAA
55 AGACACGTTGAGGTATTTTCA
* * *
22350899 ATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAAATAAGTTGAGCCTCAAGACACATT
1 ATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
*
22350964 GAGATATTTTCA
64 GAGGTATTTTCA
*
22350976 ATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
22351041 GGTATTTTTCA
66 GGTA-TTTTCA
*
22351052 ATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG-CTCAAGACACGTTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
22351116 GGTATTTTCA
66 GGTATTTTCA
**
22351126 ATTTCTGTC-TTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
22351189 GGTATTTTCA
66 GGTATTTTCA
* **
22351199 ATTTCTGTCTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
22351264 GGTATTTTCA
66 GGTATTTTCA
*
22351274 ATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
22351339 GGTATTTTCA
66 GGTATTTTCA
** * * *
22351349 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACTGCT
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACAC-GTT
*
22351413 GA-GTATTTTTA
64 GAGGTATTTTCA
* ** *
22351424 ATTTCT-ACTTTTCAAAAAAACAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAA-ATCAC
1 ATTTCTGTC-TTTC--AAAAA-AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA-CAC
*
22351487 GCCCTGAGGTATTTTCA
61 G--TTGAGGTATTTTCA
*
22351504 ATTTCTGTTTTTCAAAAAAAAAAATCAACTCATATTGCGAGA
1 ATTTCTGTCTTTC----AAAAAAATCAACTCATATTGCGAGA
22351546 GGTGAGTTAA
Statistics
Matches: 784, Mismatches: 54, Indels: 67
0.87 0.06 0.07
Matches are distributed among these distances:
68 32 0.04
69 3 0.00
70 33 0.04
71 4 0.01
72 33 0.04
73 83 0.11
74 25 0.03
75 281 0.36
76 57 0.07
77 74 0.09
78 38 0.05
79 7 0.01
80 18 0.02
81 23 0.03
82 8 0.01
85 2 0.00
86 63 0.08
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (75 bp):
ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
GGTATTTTCA
Found at i:22351213 original size:223 final size:225
Alignment explanation
Indices: 22350599--22351545 Score: 1246
Period size: 223 Copynumber: 4.2 Consensus size: 225
22350589 TGATGTTTTT
** *
22350599 ATTTCTG--TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTC-AGACACGCTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
* * **
22350660 GGTA-ATTCAATTTCTGT-TTTC---AAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCGG
66 GGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
* *
22350720 GTCACGCCGAGATA-TTTCAATTTCTAT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
131 GACACGCTGAGATATTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
22350783 TGAGCCTCAAGACACGTTGAGGTATTTTCA
196 TGAGCCTCAAGACACGTTGAGGTATTTTCA
22350813 ATTTTTGTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
1 A----T-TTC------TGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
** * ** *
22350878 AGACACGTTGAGGTATTTAAAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAAATA
55 AGACACGTTGAGGTATTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTG
**
22350943 AGTTGAGCCTCAAGACACATTGAGATATTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATT
118 AGTTGAGCCTCAAGACACGCTGAGATATTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATT
**
22351008 GCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTCA
183 GCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTTCA
*
22351052 ATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG-CTCAAGACACGTTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
22351116 GGTATTTTCAATTTCTGTC-TTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 GGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
* * * *
22351179 GACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGT
131 GACACGCTGAGATATTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
22351244 TGAGCCTCAAGACACGTTGAGGTATTTTCA
196 TGAGCCTCAAGACACGTTGAGGTATTTTCA
*
22351274 ATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
1 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
*
22351339 GGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G
66 GGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
* *
22351403 GTTCACTGCTGAG-TATTTTTAATTTCTA-CTTTTCAAAAAAACAATCAACTCATATTGCGAGAG
131 G-ACAC-GCTGAGATATTTTCAATTTCTATC-TTTC--AAAAA-AATCAACTCATATTGCGAGAG
* *
22351466 GTGAGTTGAACCTCAA-ATCACGCCCTGAGGTATTTTCA
190 GTGAGTTGAGCCTCAAGA-CACG--TTGAGGTATTTTCA
*
22351504 ATTTCTGTTTTTCAAAAAAAAAAATCAACTCATATTGCGAGA
1 ATTTCTGTCTTTC----AAAAAAATCAACTCATATTGCGAGA
22351546 GGTGAGTTAA
Statistics
Matches: 649, Mismatches: 43, Indels: 62
0.86 0.06 0.08
Matches are distributed among these distances:
214 1 0.00
218 1 0.00
219 3 0.00
222 53 0.08
223 155 0.24
224 5 0.01
225 61 0.09
226 8 0.01
227 75 0.12
228 85 0.13
229 14 0.02
230 33 0.05
231 4 0.01
234 28 0.04
235 1 0.00
236 44 0.07
237 13 0.02
238 58 0.09
239 7 0.01
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (225 bp):
ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
GGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGCTGAGATATTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTCAAGACACGTTGAGGTATTTTCA
Found at i:22352064 original size:360 final size:359
Alignment explanation
Indices: 22351378--22352096 Score: 1333
Period size: 360 Copynumber: 2.0 Consensus size: 359
22351368 ATCAACTCAT
22351378 ATTGCGAGAGGTGAGTTGAGCCTCGGTTCACTGCTGAGTATTTTTAATTTCTACTTTTCAAAAAA
1 ATTGCGAGAGGTGAGTTGAGCCTCGGTTCACTGCTGAGTATTTTTAATTTCTACTTTTCAAAAAA
22351443 ACAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAATCACGCCCTGAGGTATTTTCAATTT
66 ACAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAATCACGCCCTGAGGTATTTTCAATTT
22351508 CTGTTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTTAGGTCACACGCT
131 CTGTTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTTAGGTCACACGCT
22351573 GAGATATTTTCAATTTTTTTTTTGCTTTTCAAAGATCAACTCATAATTCAAGAGGTGAGTTGAAC
196 GAGATATTTTCAATTTTTTTTTTGCTTTTCAAAGATCAACTCATAATTCAAGAGGTGAGTTGAAC
22351638 TTCGGGTCACATCCGAGCTATTTTCAATTTCTTGTTTTCAAAAAGAATAAAGATTGGACATTTGA
261 TTCGGGTCACATCCGAGCTATTTTCAATTTCTTGTTTTCAAAAAGAATAAAGATTGGACATTTGA
22351703 ACAAAATTTAGTGCTTTTAAGTCTTTGCACTATCC
326 ACAAAATTTAGTGCTTTTAAGTC-TTGCACTATCC
22351738 ATTGCGAGAGGTGAGTTGAGCCTCGGTTCACACTGCTGAG-ATTTTTAATTTCTACTTTTCAAAA
1 ATTGCGAGAGGTGAGTTGAGCCTCGGTT--CACTGCTGAGTATTTTTAATTTCTACTTTTC-AAA
22351802 AAAACAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAAATCACGCCCTGAGGTATTTTCA
63 AAAACAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC-AAATCACGCCCTGAGGTATTTTCA
22351867 ATTTC-GTTTTTCAAAAAAAAAAATCAACTCATATTGCGAGA-GTGAGTTAAACCTTAGGTCA-A
127 ATTTCTGTTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTTAGGTCACA
22351929 CGCTGAGATATTTTCAA-TTTTTTTTTGCTTTTCAAAGATCAACTCATAATTCAAGAGGTGAGTT
192 CGCTGAGATATTTTCAATTTTTTTTTTGCTTTTCAAAGATCAACTCATAATTCAAGAGGTGAGTT
22351993 GAACTTC-GGTCACATCCCGAGCTATTTTCAATTTCTTGTTTTTCAAAAAGAATAAAGATTGGAC
257 GAACTTCGGGTCACAT-CCGAGCTATTTTCAATTTCTTG-TTTTCAAAAAGAATAAAGATTGGAC
22352057 ATTTGAACAAAATTTAGTGCTTTTAAGTCTTGCACTATCC
320 ATTTGAACAAAATTTAGTGCTTTTAAGTCTTGCACTATCC
22352097 TTATTCACAA
Statistics
Matches: 353, Mismatches: 0, Indels: 13
0.96 0.00 0.04
Matches are distributed among these distances:
358 8 0.02
359 87 0.25
360 100 0.28
361 40 0.11
362 89 0.25
363 29 0.08
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (359 bp):
ATTGCGAGAGGTGAGTTGAGCCTCGGTTCACTGCTGAGTATTTTTAATTTCTACTTTTCAAAAAA
ACAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAATCACGCCCTGAGGTATTTTCAATTT
CTGTTTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAACCTTAGGTCACACGCT
GAGATATTTTCAATTTTTTTTTTGCTTTTCAAAGATCAACTCATAATTCAAGAGGTGAGTTGAAC
TTCGGGTCACATCCGAGCTATTTTCAATTTCTTGTTTTCAAAAAGAATAAAGATTGGACATTTGA
ACAAAATTTAGTGCTTTTAAGTCTTGCACTATCC
Found at i:22352804 original size:13 final size:13
Alignment explanation
Indices: 22352786--22352810 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22352776 TTAAATCTTT
22352786 TAAAAAATAAAAA
1 TAAAAAATAAAAA
22352799 TAAAAAATAAAA
1 TAAAAAATAAAA
22352811 GAGGGCTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:22354692 original size:15 final size:15
Alignment explanation
Indices: 22354646--22354709 Score: 65
Period size: 15 Copynumber: 4.3 Consensus size: 15
22354636 ATAACTTAAA
* *
22354646 TTCAATACTTAACTT
1 TTCAACACTTAATTT
* *
22354661 TTCAATATTTAATTT
1 TTCAACACTTAATTT
*
22354676 TTCAACACTTACTTT
1 TTCAACACTTAATTT
* *
22354691 TTTAGCACTTAATTT
1 TTCAACACTTAATTT
22354706 TTCA
1 TTCA
22354710 CTTTATCAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 40 1.00
ACGTcount: A:0.30, C:0.17, G:0.02, T:0.52
Consensus pattern (15 bp):
TTCAACACTTAATTT
Found at i:22355681 original size:13 final size:14
Alignment explanation
Indices: 22355655--22355683 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
22355645 ATATAAATTA
22355655 TATAATTGTATAAT
1 TATAATTGTATAAT
22355669 TATAATT-TATAAT
1 TATAATTGTATAAT
22355682 TA
1 TA
22355684 CGAATTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (14 bp):
TATAATTGTATAAT
Found at i:22356634 original size:18 final size:18
Alignment explanation
Indices: 22356611--22356651 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
22356601 AAGATATAAA
22356611 AAAAAATATAATCTTT-TT
1 AAAAAATATAAT-TTTATT
*
22356629 AAAAAATTTAATTTTATT
1 AAAAAATATAATTTTATT
22356647 AAAAA
1 AAAAA
22356652 TTAATTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAAAATATAATTTTATT
Found at i:22356718 original size:21 final size:22
Alignment explanation
Indices: 22356657--22356716 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
22356647 AAAAATTAAT
* *
22356657 TAAAATTAAAATTTTAAATTCA
1 TAAAATTAAAAATATAAATTCA
*
22356679 -GAAATTAAAAGA-ATAAATTCA
1 TAAAATTAAAA-ATATAAATTCA
22356700 TAAAATTAAAAATATAA
1 TAAAATTAAAAATATAA
22356717 TTACTAAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
21 18 0.58
22 13 0.42
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (22 bp):
TAAAATTAAAAATATAAATTCA
Found at i:22357706 original size:24 final size:24
Alignment explanation
Indices: 22357676--22357725 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
22357666 TAGCAGCGCC
22357676 TTTCAGACAGCTAGTGCTCGATCT
1 TTTCAGACAGCTAGTGCTCGATCT
22357700 TTTCAGACAGCTAGTGCTCGATCT
1 TTTCAGACAGCTAGTGCTCGATCT
22357724 TT
1 TT
22357726 AGCGGCGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (24 bp):
TTTCAGACAGCTAGTGCTCGATCT
Found at i:22358072 original size:15 final size:14
Alignment explanation
Indices: 22358053--22358087 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
22358043 ATTATTTTAA
*
22358053 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
22358067 GAGTTTAGGGATTAT
1 G-GTTTAGGGATTAT
22358082 GGTTTA
1 GGTTTA
22358088 AGGGTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:22358073 original size:22 final size:23
Alignment explanation
Indices: 22358025--22358083 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 23
22358015 ATGATTAAGG
* *
22358025 GTTTAATGTTTAT-GAGTTATTA
1 GTTTAAGGTTTATGGAGTTATGA
*
22358047 TTTTAAGGTTTATGGA-TTATGA
1 GTTTAAGGTTTATGGAGTTATGA
* *
22358069 GTTTAGGGATTATGG
1 GTTTAAGGTTTATGG
22358084 TTTAAGGGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 28 0.93
23 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.49
Consensus pattern (23 bp):
GTTTAAGGTTTATGGAGTTATGA
Found at i:22358091 original size:15 final size:14
Alignment explanation
Indices: 22358053--22358115 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
22358043 ATTATTTTAA
* *
22358053 GGTTTATGGATTAT
1 GGTTTAAGGGTTAT
22358067 GAGTTT-AGGGATTAT
1 G-GTTTAAGGG-TTAT
22358082 GGTTTAAGGG---T
1 GGTTTAAGGGTTAT
*
22358093 GGTTTAAGGGTTGT
1 GGTTTAAGGGTTAT
22358107 GGTTTAAGG
1 GGTTTAAGG
22358116 TTTAAGTGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
11 11 0.27
14 17 0.41
15 13 0.32
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (14 bp):
GGTTTAAGGGTTAT
Found at i:22358182 original size:7 final size:7
Alignment explanation
Indices: 22358172--22358206 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
22358162 AAGATTTATA
22358172 GTTTAGG
1 GTTTAGG
22358179 GTTTAGG
1 GTTTAGG
*
22358186 GATTAGG
1 GTTTAGG
22358193 AGTTTAGG
1 -GTTTAGG
22358201 GTTTAG
1 GTTTAG
22358207 ATTAATTAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (7 bp):
GTTTAGG
Found at i:22358304 original size:14 final size:14
Alignment explanation
Indices: 22358287--22358325 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
22358277 ATCATTATAG
22358287 TTTAGGGTTTATGA
1 TTTAGGGTTTATGA
* *
22358301 TTTAGGGTATATGG
1 TTTAGGGTTTATGA
*
22358315 TTTAGAGTTTA
1 TTTAGGGTTTA
22358326 AAGTGTATGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:22358316 original size:21 final size:21
Alignment explanation
Indices: 22358292--22358404 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 21
22358282 TATAGTTTAG
22358292 GGTTTATGATTTAGGGTATAT
1 GGTTTATGATTTAGGGTATAT
** *
22358313 GGTTTA-GAGTTTAAAGTGTAT
1 GGTTTATGA-TTTAGGGTATAT
* * *
22358334 GAG-TTATTATTTTAAGGTTTAT
1 G-GTTTATGA-TTTAGGGTATAT
* *
22358356 GGATTATGGGTTTAGGG-ATTAT
1 GGTTTAT-GATTTAGGGTA-TAT
*
22358378 GGTTTATGGTTTAAGGGT-TAT
1 GGTTTATGATTT-AGGGTATAT
22358399 GGTTTA
1 GGTTTA
22358405 AGGCTTAGGG
Statistics
Matches: 72, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
20 2 0.03
21 34 0.47
22 36 0.50
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (21 bp):
GGTTTATGATTTAGGGTATAT
Found at i:22358362 original size:7 final size:7
Alignment explanation
Indices: 22358344--22358404 Score: 59
Period size: 7 Copynumber: 8.6 Consensus size: 7
22358334 GAGTTATTAT
*
22358344 TTTAAGG
1 TTTATGG
22358351 TTTATGG
1 TTTATGG
*
22358358 ATTATGGG
1 TTTAT-GG
*
22358366 TTTAGGG
1 TTTATGG
*
22358373 ATTATGG
1 TTTATGG
22358380 TTTATGG
1 TTTATGG
*
22358387 TTTAAGG
1 TTTATGG
*
22358394 GTTATGG
1 TTTATGG
22358401 TTTA
1 TTTA
22358405 AGGCTTAGGG
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
7 37 0.88
8 5 0.12
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (7 bp):
TTTATGG
Found at i:22358398 original size:14 final size:14
Alignment explanation
Indices: 22358344--22358425 Score: 65
Period size: 14 Copynumber: 5.8 Consensus size: 14
22358334 GAGTTATTAT
*
22358344 TTTAAGGTTTATGG
1 TTTAAGGGTTATGG
* * *
22358358 ATTATGGGTTTAGGG
1 TTTAAGGG-TTATGG
* * *
22358373 ATTATGGTTTATGG
1 TTTAAGGGTTATGG
22358387 TTTAAGGGTTATGG
1 TTTAAGGGTTATGG
* *
22358401 TTTAAGGCTTAGGG
1 TTTAAGGGTTATGG
*
22358415 GTTAAGGGTTA
1 TTTAAGGGTTA
22358426 AGTGTTAGGT
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
14 42 0.78
15 12 0.22
ACGTcount: A:0.22, C:0.01, G:0.34, T:0.43
Consensus pattern (14 bp):
TTTAAGGGTTATGG
Found at i:22358416 original size:21 final size:21
Alignment explanation
Indices: 22358367--22358427 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
22358357 GATTATGGGT
* * *
22358367 TTAGGGATTATGGTTTATGGT
1 TTAGGGGTTATGGTTTAAGGC
*
22358388 TTAAGGGTTATGGTTTAAGGC
1 TTAGGGGTTATGGTTTAAGGC
* *
22358409 TTAGGGGTTAAGGGTTAAG
1 TTAGGGGTTATGGTTTAAG
22358428 TGTTAGGTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.23, C:0.02, G:0.36, T:0.39
Consensus pattern (21 bp):
TTAGGGGTTATGGTTTAAGGC
Found at i:22363741 original size:16 final size:16
Alignment explanation
Indices: 22363720--22363753 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
22363710 GCTTATTCTC
22363720 AAGGAAGAAATCAAGG
1 AAGGAAGAAATCAAGG
22363736 AAGGAAGAAATCAAGG
1 AAGGAAGAAATCAAGG
22363752 AA
1 AA
22363754 AGAGAGGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.59, C:0.06, G:0.29, T:0.06
Consensus pattern (16 bp):
AAGGAAGAAATCAAGG
Found at i:22367017 original size:11 final size:11
Alignment explanation
Indices: 22366998--22367030 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
22366988 TTTGATGATT
22366998 ATTTG-TTTAA
1 ATTTGTTTTAA
22367008 ATTTGTTTTAA
1 ATTTGTTTTAA
*
22367019 ATTTTTTTTAA
1 ATTTGTTTTAA
22367030 A
1 A
22367031 GTAAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (11 bp):
ATTTGTTTTAA
Found at i:22370003 original size:16 final size:16
Alignment explanation
Indices: 22369952--22370003 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
22369942 AACGGCATGT
22369952 TAAAACATCAGAAGTA
1 TAAAACATCAGAAGTA
* * * *
22369968 TAAATCTAACA-CAGTT
1 TAAAAC-ATCAGAAGTA
22369984 TAAAACATCAGAAGTA
1 TAAAACATCAGAAGTA
22370000 TAAA
1 TAAA
22370004 TCTAAACCCG
Statistics
Matches: 26, Mismatches: 8, Indels: 4
0.68 0.21 0.11
Matches are distributed among these distances:
15 3 0.12
16 20 0.77
17 3 0.12
ACGTcount: A:0.54, C:0.13, G:0.10, T:0.23
Consensus pattern (16 bp):
TAAAACATCAGAAGTA
Found at i:22370112 original size:204 final size:203
Alignment explanation
Indices: 22369758--22370164 Score: 787
Period size: 204 Copynumber: 2.0 Consensus size: 203
22369748 ATAAATAGTT
22369758 AGAATATAAATCTAACACAGATTAAAACATCAGAAGTATAAATCTAAACCCGACAAGCAACTCTG
1 AGAATATAAATCTAACACAGATTAAAACATCAGAAGTATAAATCTAAACCCGACAAGCAACTCTG
*
22369823 CCTTCAGCCAACCATATCTAGATATATGATACATAACACAACCTCGCATTAAAATTTTGCGGGTA
66 CCTTCAGCCAACCATATCTAGATATATGATACATAACACAACCTCACATTAAAATTTTGCGGGTA
22369888 AAGAATCAGTTCATAGATATGGTAAATGATATATTGCCCTATAATGTCAGCAGCAACGGCATGTT
131 AAGAATCAGTTCATAGATATGGTAAATGATATATTGCCCTATAATGTCAGCAGCAACGGCATGTT
22369953 AAAACATC
196 AAAACATC
*
22369961 AGAAGTATAAATCTAACACAGTTTAAAACATCAGAAGTATAAATCTAAACCCGACAAGCAACTCT
1 AGAA-TATAAATCTAACACAGATTAAAACATCAGAAGTATAAATCTAAACCCGACAAGCAACTCT
22370026 GCCTTCAGCCAACCATATCTAGATATATGATACATAACACAACCTCACATTAAAATTTTGCGGGT
65 GCCTTCAGCCAACCATATCTAGATATATGATACATAACACAACCTCACATTAAAATTTTGCGGGT
22370091 AAAGAATCAGTTCATAGATATGGTAAATGATATATTGCCCTATAATGTCAGCAGCAACGGCATGT
130 AAAGAATCAGTTCATAGATATGGTAAATGATATATTGCCCTATAATGTCAGCAGCAACGGCATGT
22370156 TAAAACATC
195 TAAAACATC
22370165 TAAGCAAGTG
Statistics
Matches: 201, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
203 4 0.02
204 197 0.98
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (203 bp):
AGAATATAAATCTAACACAGATTAAAACATCAGAAGTATAAATCTAAACCCGACAAGCAACTCTG
CCTTCAGCCAACCATATCTAGATATATGATACATAACACAACCTCACATTAAAATTTTGCGGGTA
AAGAATCAGTTCATAGATATGGTAAATGATATATTGCCCTATAATGTCAGCAGCAACGGCATGTT
AAAACATC
Found at i:22374062 original size:5 final size:5
Alignment explanation
Indices: 22374052--22374083 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
22374042 CCCAATTCAA
*
22374052 AATAT AATAT AATAT AATAT AATAT GATAT AA
1 AATAT AATAT AATAT AATAT AATAT AATAT AA
22374084 AAATTATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:22382997 original size:25 final size:25
Alignment explanation
Indices: 22382941--22382997 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
22382931 ATATTTGCAA
* * *
22382941 CATATTTCACATTCTATTTTTCATT
1 CATATTTCACATTCCATTTCTCATC
22382966 CACTATTTCAC-TTCCATTTCTCATAC
1 CA-TATTTCACATTCCATTTCTCAT-C
22382992 CATATT
1 CATATT
22382998 ATTTCAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 17 0.63
26 10 0.37
ACGTcount: A:0.25, C:0.26, G:0.00, T:0.49
Consensus pattern (25 bp):
CATATTTCACATTCCATTTCTCATC
Found at i:22383189 original size:37 final size:38
Alignment explanation
Indices: 22383094--22383191 Score: 101
Period size: 40 Copynumber: 2.6 Consensus size: 38
22383084 ACACACCAAT
*
22383094 TTGGCACCCAGTGCCTCATCGGATAATTCGAAGTAATAAA
1 TTGGCACCCAGTGCCTCATCGGATAACTCGAAG--ATAAA
* * * *
22383134 TTGACATCCAGTGTCTCATCGGCTAAACT-GAAG-TAAA
1 TTGGCACCCAGTGCCTCATCGGAT-AACTCGAAGATAAA
*
22383171 TTGGCACCCAATGCCTCATCG
1 TTGGCACCCAGTGCCTCATCG
22383192 AATATATCCG
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
37 21 0.44
40 24 0.50
41 3 0.06
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (38 bp):
TTGGCACCCAGTGCCTCATCGGATAACTCGAAGATAAA
Found at i:22383395 original size:5 final size:5
Alignment explanation
Indices: 22383385--22383417 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
22383375 TACACATATG
22383385 AATTC AATTC AATTC AATTC AATTC AATATC AA
1 AATTC AATTC AATTC AATTC AATTC AAT-TC AA
22383418 AATATCAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 23 0.85
6 4 0.15
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (5 bp):
AATTC
Found at i:22383405 original size:15 final size:16
Alignment explanation
Indices: 22383380--22383417 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
22383370 TCACATACAC
*
22383380 ATATGAATTCAATTCA
1 ATATCAATTCAATTCA
22383396 AT-TCAATTCAATTCA
1 ATATCAATTCAATTCA
22383411 ATATCAA
1 ATATCAA
22383418 AATATCAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.37
Consensus pattern (16 bp):
ATATCAATTCAATTCA
Found at i:22386114 original size:40 final size:40
Alignment explanation
Indices: 22386070--22386153 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
22386060 AGTTATATTT
22386070 ATTTTATTTTATTTTTATGAGTTTTAGATGACCTTGAATA
1 ATTTTATTTTATTTTTATGAGTTTTAGATGACCTTGAATA
*
22386110 ATTTTATTTTATTTTTATGAGTTTTAGATGAGCTTGAATA
1 ATTTTATTTTATTTTTATGAGTTTTAGATGACCTTGAATA
22386150 ATTT
1 ATTT
22386154 AGTTAATATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.27, C:0.04, G:0.13, T:0.56
Consensus pattern (40 bp):
ATTTTATTTTATTTTTATGAGTTTTAGATGACCTTGAATA
Found at i:22389417 original size:28 final size:28
Alignment explanation
Indices: 22389386--22389468 Score: 69
Period size: 28 Copynumber: 3.0 Consensus size: 28
22389376 AAAATTTCCA
*
22389386 AATTTACCTCTTTTTTTCCAGATTTTAT
1 AATTTACCTCTTATTTTCCAGATTTTAT
** * *
22389414 AATTTTTCTCATATTTTCTAGATTTTAT
1 AATTTACCTCTTATTTTCCAGATTTTAT
* * * *
22389442 AGTTTTGCCT-TTGTTTTCCAAATTTTA
1 A-ATTTACCTCTTATTTTCCAGATTTTA
22389469 CAGTTTTACC
Statistics
Matches: 42, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
28 37 0.88
29 5 0.12
ACGTcount: A:0.22, C:0.14, G:0.06, T:0.58
Consensus pattern (28 bp):
AATTTACCTCTTATTTTCCAGATTTTAT
Found at i:22399249 original size:6 final size:6
Alignment explanation
Indices: 22399238--22399271 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
22399228 CAAAACAATC
* *
22399238 ATAAAA ATAAAA ATAAAA AGAAAA AGAAAA ATAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAA
22399272 GACAAAAGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (6 bp):
ATAAAA
Found at i:22401367 original size:15 final size:14
Alignment explanation
Indices: 22401347--22401403 Score: 78
Period size: 15 Copynumber: 3.9 Consensus size: 14
22401337 CGATGAATTT
22401347 ATTGAATCTATATTG
1 ATTGAAT-TATATTG
*
22401362 ATTGAAATTATTTTG
1 ATTG-AATTATATTG
22401377 ATTGAATTTATATTG
1 ATTGAA-TTATATTG
22401392 ATTGAATTATAT
1 ATTGAATTATAT
22401404 AATATACATG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
14 8 0.21
15 27 0.71
16 3 0.08
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.51
Consensus pattern (14 bp):
ATTGAATTATATTG
Found at i:22401834 original size:21 final size:21
Alignment explanation
Indices: 22401780--22401838 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
22401770 ACCGATCAGA
*
22401780 CACTTTATGTGTAGTATTTTAGG
1 CACTTTATGTGTCG--TTTTAGG
* **
22401803 CACCTCGTGTGTCGTTTTAGG
1 CACTTTATGTGTCGTTTTAGG
22401824 CACTTTATGTGTCGT
1 CACTTTATGTGTCGT
22401839 ATACTGATCA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
21 19 0.66
23 10 0.34
ACGTcount: A:0.15, C:0.17, G:0.24, T:0.44
Consensus pattern (21 bp):
CACTTTATGTGTCGTTTTAGG
Found at i:22402754 original size:15 final size:15
Alignment explanation
Indices: 22402721--22402754 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22402711 AGTTATGTCT
*
22402721 ATGTATGGAATTATA
1 ATGTATGGAATTAGA
*
22402736 ATGTATGGAATTAGC
1 ATGTATGGAATTAGA
22402751 ATGT
1 ATGT
22402755 CAAAAAGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (15 bp):
ATGTATGGAATTAGA
Found at i:22407282 original size:6 final size:6
Alignment explanation
Indices: 22407263--22407313 Score: 66
Period size: 6 Copynumber: 8.5 Consensus size: 6
22407253 AAATATGAAA
* * * *
22407263 AAAAAT AAACAT AAAAAT AAAAAT AAACAT AAAAAT AAACAT AAAGAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
22407311 AAA
1 AAA
22407314 TGAACTCAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:22407286 original size:18 final size:18
Alignment explanation
Indices: 22407263--22407313 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
22407253 AAATATGAAA
22407263 AAAAATAAACATAAAAAT
1 AAAAATAAACATAAAAAT
22407281 AAAAATAAACATAAAAAT
1 AAAAATAAACATAAAAAT
* *
22407299 AAACATAAAGATAAA
1 AAAAATAAACATAAA
22407314 TGAACTCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.16
Consensus pattern (18 bp):
AAAAATAAACATAAAAAT
Found at i:22408634 original size:8 final size:8
Alignment explanation
Indices: 22408618--22408648 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
22408608 AGAATTAAAG
22408618 AAAGAAAAT
1 AAAG-AAAT
22408627 AAAGAAAT
1 AAAGAAAT
22408635 AAAGAAAT
1 AAAGAAAT
22408643 AAAGAA
1 AAAGAA
22408649 TGAAAATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (8 bp):
AAAGAAAT
Found at i:22408637 original size:21 final size:20
Alignment explanation
Indices: 22408603--22408641 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
22408593 ATAAAATAAC
*
22408603 AAATAAGAATTAAAGAAAGA
1 AAATAAGAAATAAAGAAAGA
22408623 AAATAAAGAAATAAAGAAA
1 AAAT-AAGAAATAAAGAAA
22408642 TAAAGAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (20 bp):
AAATAAGAAATAAAGAAAGA
Found at i:22408645 original size:29 final size:29
Alignment explanation
Indices: 22408595--22408673 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
22408585 AAAATAAAAT
* *
22408595 AAAAT-AACAAAT-AAGAATTAAAGAAAG
1 AAAATAAAAAAATAAAGAAATAAAGAAAG
* *
22408622 AAAATAAAGAAATAAAGAAATAAAGAATG
1 AAAATAAAAAAATAAAGAAATAAAGAAAG
22408651 AAAATGAAACAAAAATAAAGAAA
1 AAAAT--AA-AAAAATAAAGAAA
22408674 AAGTTAGGGA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
27 5 0.12
28 6 0.14
29 18 0.42
31 2 0.05
32 12 0.28
ACGTcount: A:0.73, C:0.03, G:0.11, T:0.13
Consensus pattern (29 bp):
AAAATAAAAAAATAAAGAAATAAAGAAAG
Found at i:22426940 original size:22 final size:24
Alignment explanation
Indices: 22426891--22426968 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 24
22426881 ATTCAATTTG
*
22426891 AATATATAAACTATATTTTAAATATTAA
1 AATATAT-AACT-TA-TATAAAT-TTAA
22426919 AATATTATAA-TTA-A-AAATTTAA
1 AATA-TATAACTTATATAAATTTAA
*
22426941 AATATATAACTTATATATATTTAA
1 AATATATAACTTATATAAATTTAA
22426965 AATA
1 AATA
22426969 AATTTTAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
21 5 0.11
22 11 0.25
23 5 0.11
24 11 0.25
26 2 0.05
27 1 0.02
28 6 0.14
29 3 0.07
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (24 bp):
AATATATAACTTATATAAATTTAA
Found at i:22427226 original size:22 final size:23
Alignment explanation
Indices: 22427195--22427244 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
22427185 AAACATAATA
22427195 AAAAATTTATA-ATGAAATTATTT
1 AAAAATTTATATAT-AAATTATTT
* *
22427218 AAAAA-TTATATATATATTTTTT
1 AAAAATTTATATATAAATTATTT
22427240 AAAAA
1 AAAAA
22427245 AAACCTCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
AAAAATTTATATATAAATTATTT
Found at i:22428819 original size:19 final size:19
Alignment explanation
Indices: 22428795--22428831 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22428785 GAAATAAGGG
*
22428795 AAGGAAAGAAGGAAAAAGA
1 AAGGAAAGAAAGAAAAAGA
22428814 AAGGAAAGAAAGAAAAAG
1 AAGGAAAGAAAGAAAAAG
22428832 GGAAAATTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAGGAAAGAAAGAAAAAGA
Found at i:22429458 original size:3 final size:3
Alignment explanation
Indices: 22429450--22429479 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
22429440 GAATGGTAAG
22429450 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
22429480 GGTATTGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:22430067 original size:18 final size:18
Alignment explanation
Indices: 22430009--22430085 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 18
22429999 GACTGTCTGC
* *
22430009 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTAT
*
22430027 TACAGAATAAATGACTGA-
1 TACTGAATAAATGACT-AT
* *
22430045 AACTGAATAAATGAATAT
1 TACTGAATAAATGACTAT
* * *
22430063 TACTGATTAACTGATTAT
1 TACTGAATAAATGACTAT
22430081 TACTG
1 TACTG
22430086 TTGACTAACT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
17 1 0.02
18 46 0.98
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:22435054 original size:15 final size:15
Alignment explanation
Indices: 22435015--22435057 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
22435005 GGTTTTATAT
22435015 TTGATATTTATT-AA
1 TTGATATTTATTAAA
* *
22435029 TGTTATTTTTATTAAA
1 T-TGATATTTATTAAA
22435045 TTGATATTTATTA
1 TTGATATTTATTA
22435058 TGAAATAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 1 0.04
15 19 0.83
16 3 0.13
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TTGATATTTATTAAA
Found at i:22436342 original size:6 final size:6
Alignment explanation
Indices: 22436331--22436357 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
22436321 TGTGCACCGC
22436331 TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TAC
22436358 CCTTACAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Done.