Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 73 of 352
Found at i:22757230 original size:51 final size:50
Alignment explanation
Indices: 22757016--22757231 Score: 200
Period size: 51 Copynumber: 4.2 Consensus size: 50
22757006 TTGTGAGAAC
* * * *** * *
22757016 ACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTGTAGTT
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTT-TGGTT
* * * *
22757067 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTC
1 -ACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTGGTT
* * * *
22757118 ACATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCA-ACAACTTTGATT
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCAGA-TAGTTTGGTT
* *
22757169 ACGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAGTTTCGGTT
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTT-GGTT
* *
22757220 ACAAGGGTAGTA
1 ACATGTGTAGTA
22757232 ATATGTACAA
Statistics
Matches: 133, Mismatches: 27, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
50 40 0.30
51 55 0.41
52 38 0.29
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTGGTT
Found at i:22757430 original size:16 final size:15
Alignment explanation
Indices: 22757409--22757438 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
22757399 GAATGGAGTC
22757409 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
22757425 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
22757439 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:22762357 original size:307 final size:304
Alignment explanation
Indices: 22761615--22762538 Score: 1318
Period size: 304 Copynumber: 3.0 Consensus size: 304
22761605 TAATTACAAA
* * * * * *
22761615 AGAATAAAAAGGAAAGACATTTTCACCAGCAATAACATGTAGAGCGAAGAAATAAAATGGTTTTA
1 AGAATAAAAAAGAATGCCCTTTTCACCAGCAATAACATGCAGAGCGAAGAAATAAAATGATTTTA
* *
22761680 GATCCAAATTTGAGTAAAACCAAGTTCTTAGCAGAAATTATGCAAAACCCACATTAGAAATACAA
66 GATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAA
* **
22761745 TTAATCATGTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAGGTATAGTTTAAAG
131 TTAATAATGTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAG
* * * *
22761810 AAAGCAAAAGCTACTAACCAATTAGCTCTGAACCAAAATTTACCCAAGACCA-GAAAACAAAAAT
196 AAA-CAAAAGCTACTAACCAATTAGCTATGAACCAAAACTTACCCAAGACCACAAAAAAAAAAAT
*
22761874 TGCAAGGTAGTT-AATCACAAAATCAGCAGTAAGAAAGAATAATCT
260 TGCAAGGTAATTCAA-CACAAAATCAGCAGTAAGAAAGAATAATCT
* * * *
22761919 AGAATAAAAAGGAATGCCCTTTTCACCTGCAATAACATGCAGAGCAAAAAAATAAAATGATTTTA
1 AGAATAAAAAAGAATGCCCTTTTCACCAGCAATAACATGCAGAGCGAAGAAATAAAATGATTTTA
* * * *
22761984 GATCCAAATTTGAGTAAAACCAAGTTGTTAGTAGAAATTATGCAAAACCTACATCATATATACAA
66 GATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAA
* *
22762049 TTAATAATGTAGAGTCTCAAAGTACCAAGCAGATAAAACTAATAACATAGAAATACAGTTTAAAG
131 TTAATAATGTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAG
*
22762114 AATACAAAAGCTATTAACCAATTAGCT-TGAACCAAAACTTACCCAAGACCAACAAAAAAGAAAA
196 AA-ACAAAAGCTACTAACCAATTAGCTATGAACCAAAACTTACCCAAGACC-ACAAAAAA-AAAA
* * * *
22762178 ATTGCAAGGTAATTCAGCACAAAATTAGCAATAAGAAAGAATAATTT
258 ATTGCAAGGTAATTCAACACAAAATCAGCAGTAAGAAAGAATAATCT
* * * * *
22762225 GGAATAAAAAAAGAA-GACTCTTTTCACCAGCAGT-ACTATGCAGAGCGTAGAAATAAAACGATT
1 AGAAT-AAAAAAGAATG-CCCTTTTCACCAGCAATAAC-ATGCAGAGCGAAGAAATAAAATGATT
* *
22762288 TTAGATCCAAATTTGAGTAAAACCAAGTTGATAGCAGAAATTATGCAAAACCCATATCAGAAATA
63 TTAGATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATA
* * * *
22762353 CAATTAATAATGTAGAGTCTCCAAGTACTAAACAGATAAAACTAAAAACATAGAAATATAATTTA
128 CAATTAATAATGTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTA
*
22762418 AAGAAAACAAAAGCTACTAACCAATTAGCTATGAACCCAAACTTACCCAAGACCAGCAAAAAAAA
193 AAG-AAACAAAAGCTACTAACCAATTAGCTATGAACCAAAACTTACCCAAGACCA-CAAAAAAAA
*
22762483 AAGATTGCAAGGTAATTCAATACAAAATCAGCAGTAAGAAAGAATAATCT
256 AA-ATTGCAAGGTAATTCAACACAAAATCAGCAGTAAGAAAGAATAATCT
22762533 AGAATA
1 AGAATA
22762539 CCCACAAAGA
Statistics
Matches: 551, Mismatches: 57, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
303 22 0.04
304 201 0.36
305 5 0.01
306 51 0.09
307 195 0.35
308 77 0.14
ACGTcount: A:0.49, C:0.16, G:0.14, T:0.22
Consensus pattern (304 bp):
AGAATAAAAAAGAATGCCCTTTTCACCAGCAATAACATGCAGAGCGAAGAAATAAAATGATTTTA
GATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAA
TTAATAATGTAGAGTCTCCAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAG
AAACAAAAGCTACTAACCAATTAGCTATGAACCAAAACTTACCCAAGACCACAAAAAAAAAAATT
GCAAGGTAATTCAACACAAAATCAGCAGTAAGAAAGAATAATCT
Found at i:22763300 original size:31 final size:29
Alignment explanation
Indices: 22763236--22763304 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
22763226 ATAATAATAT
* *
22763236 AAGTGACTAAAACGTAACATTTCAAACAT
1 AAGTGACTAAAACGTAACATGTCAAACAA
* *
22763265 AAGTGACTAAAATGTAACCTGAGTCAAACAA
1 AAGTGACTAAAACGTAACAT--GTCAAACAA
22763296 AAGTGACTA
1 AAGTGACTA
22763305 TTTTTGTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 18 0.53
31 16 0.47
ACGTcount: A:0.48, C:0.16, G:0.14, T:0.22
Consensus pattern (29 bp):
AAGTGACTAAAACGTAACATGTCAAACAA
Found at i:22767083 original size:17 final size:18
Alignment explanation
Indices: 22767049--22767085 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
22767039 GTAATTTTGC
22767049 ATAAATATGAACTATGGA
1 ATAAATATGAACTATGGA
22767067 ATAAAT-TGAA-TACTGGA
1 ATAAATATGAACTA-TGGA
22767084 AT
1 AT
22767086 TACTTAATCG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 2 0.11
17 10 0.56
18 6 0.33
ACGTcount: A:0.49, C:0.05, G:0.16, T:0.30
Consensus pattern (18 bp):
ATAAATATGAACTATGGA
Found at i:22773556 original size:240 final size:241
Alignment explanation
Indices: 22773133--22773618 Score: 875
Period size: 240 Copynumber: 2.0 Consensus size: 241
22773123 ATGAATTAAT
*
22773133 TTTATTACCAAGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
1 TTTATTACCAAGTAGCTTACTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
** *
22773198 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGATGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAAAATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
22773263 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
22773328 AAAAAGACTTGGAAAAAGTTCTATCGATCTCATTTACTGTTGAA-A
196 AAAAAGACTTGGAAAAAGTTCTATCGATCTCATTTACTATTGAATA
** * * *
22773373 TTTATTACCGTGTAGCTTACTTGTTCATTAAAATTACAACAATAGCTTACCTTCTCTCCAACCTT
1 TTTATTACCAAGTAGCTTACTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
22773438 ATTTTAAATATTTTAAAGATTCAAAAAATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAAAATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
22773503 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
22773568 AAAAAGACTTGGAAAAAGTTCTATCGATCTCATTTACTATTGAATA
196 AAAAAGACTTGGAAAAAGTTCTATCGATCTCATTTACTATTGAATA
22773614 TTTAT
1 TTTAT
22773619 ATAACCTTAA
Statistics
Matches: 235, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
240 229 0.97
241 6 0.03
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (241 bp):
TTTATTACCAAGTAGCTTACTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACATT
ATTTTAAATATTTTAAAGATTCAAAAAATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTGGAAAAAGTTCTATCGATCTCATTTACTATTGAATA
Found at i:22773821 original size:9 final size:9
Alignment explanation
Indices: 22773798--22773955 Score: 129
Period size: 9 Copynumber: 16.6 Consensus size: 9
22773788 ATTGATCATT
*
22773798 ACTTAAATA
1 ACTTACATA
*
22773807 AATTACATA
1 ACTTACATA
22773816 ACTTACATA
1 ACTTACATA
* *
22773825 ACTCATATA
1 ACTTACATA
*
22773834 ACATACATA
1 ACTTACATA
*
22773843 ATTTACATAACA
1 ACTTACAT---A
22773855 ACTTACATA
1 ACTTACATA
*
22773864 ACTCACATA
1 ACTTACATA
22773873 ACTTACAT-
1 ACTTACATA
22773881 ACTTTACATAACA
1 AC-TTACAT---A
22773894 ACTTACATA
1 ACTTACATA
*
22773903 ACTCACATA
1 ACTTACATA
22773912 ACTTACATA
1 ACTTACATA
*
22773921 ATTTACATA
1 ACTTACATA
*
22773930 ACGTACATAACA
1 ACTTACAT---A
22773942 ACTTACATA
1 ACTTACATA
22773951 ACTTA
1 ACTTA
22773956 ACTAATACAT
Statistics
Matches: 119, Mismatches: 19, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
8 2 0.02
9 93 0.78
12 22 0.18
13 2 0.02
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:22773862 original size:39 final size:39
Alignment explanation
Indices: 22773815--22773931 Score: 207
Period size: 39 Copynumber: 3.0 Consensus size: 39
22773805 TAAATTACAT
* *
22773815 AACTTACATAACTCATATAACATACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
*
22773854 AACTTACATAACTCACATAACTTACATACTTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
22773893 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
22773932 GTACATAACA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:22773889 original size:48 final size:45
Alignment explanation
Indices: 22773809--22773953 Score: 149
Period size: 48 Copynumber: 3.2 Consensus size: 45
22773799 CTTAAATAAA
* * *
22773809 TTACATAACTTACATAACTCATATAACATACATAATTTACATAACAAC
1 TTACATAACTCACATAACT--TA-CATATACATAATTTACATAACAAC
22773857 TTACATAACTCACATAACTTAC--ATAC----TTTACATAACAAC
1 TTACATAACTCACATAACTTACATATACATAATTTACATAACAAC
**
22773896 TTACATAACTCACATAACTTACATAATTTACATAACGTACATAACAAC
1 TTACATAACTCACATAACTTACAT-A--TACATAATTTACATAACAAC
22773944 TTACATAACT
1 TTACATAACT
22773954 TAACTAATAC
Statistics
Matches: 84, Mismatches: 4, Indels: 18
0.79 0.04 0.17
Matches are distributed among these distances:
39 35 0.42
42 1 0.01
43 4 0.05
44 3 0.04
46 2 0.02
48 39 0.46
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.31
Consensus pattern (45 bp):
TTACATAACTCACATAACTTACATATACATAATTTACATAACAAC
Found at i:22773950 original size:39 final size:39
Alignment explanation
Indices: 22773819--22773955 Score: 186
Period size: 39 Copynumber: 3.5 Consensus size: 39
22773809 TTACATAACT
* * *
22773819 TACATAACTCATATAACATACATAATTTACATAACAACT
1 TACATAACTCACATAACTTACATAATTTACATAACAACA
* *
22773858 TACATAACTCACATAACTTACATACTTTACATAACAACT
1 TACATAACTCACATAACTTACATAATTTACATAACAACA
*
22773897 TACATAACTCACATAACTTACATAATTTACATAACGTACA
1 TACATAACTCACATAACTTACATAATTTACATAAC-AACA
* *
22773937 TA-ACAACTTACATAACTTA
1 TACATAACTCACATAACTTA
22773956 ACTAATACAT
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 85 0.96
40 4 0.04
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.31
Consensus pattern (39 bp):
TACATAACTCACATAACTTACATAATTTACATAACAACA
Found at i:22779454 original size:21 final size:21
Alignment explanation
Indices: 22779428--22779467 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
22779418 CTTAGAGCGA
*
22779428 AGGCAGCAGTGAGGGAGGCAG
1 AGGCAGCAGAGAGGGAGGCAG
22779449 AGGCAGCAGAGAGGGAGGC
1 AGGCAGCAGAGAGGGAGGC
22779468 GGAGCAGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.53, T:0.03
Consensus pattern (21 bp):
AGGCAGCAGAGAGGGAGGCAG
Found at i:22788389 original size:131 final size:130
Alignment explanation
Indices: 22788119--22788588 Score: 402
Period size: 131 Copynumber: 3.6 Consensus size: 130
22788109 TCCAACGAGA
* ** * * ** *
22788119 AAATCGAAACCCAGCACAGTAGGGCACGACTCCTTGAATTTCTAAACATTCG-ACATTGCCTT-A
1 AAATCGAAACCCAGCACAGTAGGGCACGATTCCCCGAATTGCCAAACA-TCGAACATCACCTTCG
* * * *
22788182 TTTTAG-G-A--TTTGAAGAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAAC
65 TTTTAGAGAATTTTTAAAG-ACATGGGTGAAATTCTAAAGGAATATTCGATTA-TTTGAGCAAAT
*
22788243 AGG
128 GGG
* * * *
22788246 AGATCGCAACCCAGCAC-GATAGGGCACGATTCCCCGAATTGCTAAACATCGAACATTACCTTCG
1 AAATCGAAACCCAGCACAG-TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATCACCTTCG
* * * * **
22788310 TTTTAGAGAATTTTTAAAGACATGGGTGAAATTCCAAAGGAATACTCAATTGTTTAGAGTGAATG
65 TTTTAGAGAATTTTTAAAGACATGGGTGAAATTCTAAAGGAATATTCGATTATTT-GAGCAAATG
22788375 GG
129 GG
* * * ** *
22788377 AAATCGAAACCCAGCAC-GATAGGGCACGATT-CCCTAATTTCCAAACATTGAGTATCACTTTCG
1 AAATCGAAACCCAGCACAG-TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATCACCTTCG
* * * * *
22788440 TTTT-GAAGAATTTTTAGAAAACATGGATGAAATTCTAAAGGGACATTTGATTATTTGAGCAAAT
65 TTTTAG-AGAATTTTTA-AAGACATGGGTGAAATTCTAAAGGAATATTCGATTATTTGAGCAAAT
*
22788504 GAG
128 GGG
* * * * * ** *
22788507 AAATTGCAACCCAGCACATTAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGTCTTTGT
1 AAATCGAAACCCAGCACAGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATCACCTTCGT
*
22788572 TTTAAAGAATTTTTAAA
66 TTTAGAGAATTTTTAAA
22788589 AGAATGATTA
Statistics
Matches: 274, Mismatches: 56, Indels: 23
0.78 0.16 0.07
Matches are distributed among these distances:
126 4 0.01
127 49 0.18
128 6 0.02
129 2 0.01
130 79 0.29
131 128 0.47
132 6 0.02
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (130 bp):
AAATCGAAACCCAGCACAGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATCACCTTCGT
TTTAGAGAATTTTTAAAGACATGGGTGAAATTCTAAAGGAATATTCGATTATTTGAGCAAATGGG
Found at i:22788532 original size:130 final size:129
Alignment explanation
Indices: 22788197--22788589 Score: 407
Period size: 131 Copynumber: 3.0 Consensus size: 129
22788187 GGATTTGAAG
* * *
22788197 AACAT-GAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAA-CAGGAGATCGCAACCCAG
1 AACATGGA-TGAAATTCTAAAGGAATATTCGATTA-TTTGAGCAAATGA-GAAATCGCAACCCAG
* *
22788260 CACGATAGGGCACGATTCCCCGAATTGCTAAACATCGAACATTACCTTCGTTTTAGAGAATTTTT
63 CACGATAGGGCACGATT-CCCGAATTGCCAAACATCGAACATCACCTTCGTTTTAGAGAATTTTT
22788325 AAA
127 AAA
* * * * * * ** * *
22788328 GACATGGGTGAAATTCCAAAGGAATACTCAATTGTTTAGAGTGAATGGGAAATCGAAACCCAGCA
1 AACATGGATGAAATTCTAAAGGAATATTCGATTATTT-GAGCAAATGAGAAATCGCAACCCAGCA
* * * ** *
22788393 CGATAGGGCACGATTCCCTAATTTCCAAACATTGAGTATCACTTTCGTTTT-GAAGAATTTTTAG
65 CGATAGGGCACGATTCCCGAATTGCCAAACATCGAACATCACCTTCGTTTTAG-AGAATTTTTA-
22788457 AA
128 AA
* * * *
22788459 AACATGGATGAAATTCTAAAGGGACATTTGATTATTTGAGCAAATGAGAAATTGCAACCCAGCAC
1 AACATGGATGAAATTCTAAAGGAATATTCGATTATTTGAGCAAATGAGAAATCGCAACCCAGCAC
* ** * *
22788524 -ATTAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGTCTTTGTTTTAAAGAATTTTTAA
66 GA-TAGGGCACGATTCC-CGAATTGCCAAACATCGAACATCACCTTCGTTTTAGAGAATTTTTAA
22788588 A
129 A
22788589 A
1 A
22788590 GAATGATTAT
Statistics
Matches: 208, Mismatches: 46, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
129 2 0.01
130 81 0.39
131 124 0.60
132 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (129 bp):
AACATGGATGAAATTCTAAAGGAATATTCGATTATTTGAGCAAATGAGAAATCGCAACCCAGCAC
GATAGGGCACGATTCCCGAATTGCCAAACATCGAACATCACCTTCGTTTTAGAGAATTTTTAAA
Found at i:22791636 original size:134 final size:132
Alignment explanation
Indices: 22791364--22791626 Score: 350
Period size: 133 Copynumber: 2.0 Consensus size: 132
22791354 CCTGGAGACC
* * * * ** *
22791364 AGATCTGCAATCTTTAGCCTACTCTACTACAACTTTAGGGAGATAGGATGGTGGCTTATATCTGC
1 AGATCTACAATATTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATAATGGCTTATACCTGC
* * *
22791429 TTCACTGTAACTTCAGGAAGACAAGATCTACCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAA
66 TTCACTGCAACTTCAGGAAGACAAGATCTA-CGTCTTCAATCTGCTCCACTGCAACTTCAAGGAA
22791494 ACA
130 ACA
*
22791497 AGATCTACAATATTCAGCCTACTCCACTACAACTTTAGGGAGATATGATAATGGCTTA-AGCCTG
1 AGATCTACAATATTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATAATGGCTTATA-CCTG
* *
22791561 CTTCGCTGCAATCTTCAGGAAGACAAGATTCGT-CGTCTTCAATCTGCTTCACTGCAACTTCAAG
65 CTTCACTGCAA-CTTCAGGAAGACAAGA-TC-TACGTCTTCAATCTGCTCCACTGCAACTTCAAG
22791625 GA
127 GA
22791627 GACTTGATCT
Statistics
Matches: 113, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
132 1 0.01
133 63 0.56
134 46 0.41
135 2 0.02
136 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
AGATCTACAATATTCAGCCTACTCCACTACAACTTTAGGGAGATAGGATAATGGCTTATACCTGC
TTCACTGCAACTTCAGGAAGACAAGATCTACGTCTTCAATCTGCTCCACTGCAACTTCAAGGAAA
CA
Found at i:22797585 original size:131 final size:130
Alignment explanation
Indices: 22797405--22797689 Score: 385
Period size: 131 Copynumber: 2.2 Consensus size: 130
22797395 ATGTTTGATA
* * *
22797405 TTTGGCAATTCGTAGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCATTTGCTCAAAATAAT
1 TTTGGCAATTCG-GGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCATTCGCTCAAAACAAT
* * * *
22797470 CGAATGTCCCTTT-AGAATTTCATCCATGTTTTCTAAAAATTCT-TCAAAACGAAGGTGATACTC
65 CGAATATCCCTTTGA-AATTTCACCCATGTCTT-TAAAAATTCTCT-AAAACGAAGGTAATACTC
22797533 GATG
127 GATG
* * * *
22797537 TTTGGCAATTCGGGAATCGTGCCCTATCGTGTTGGGTTGCGATTTCTCATTCGTTCAAAACAATC
1 TTTGGCAATTCGGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCATTCGCTCAAAACAATC
* **
22797602 GAATATTCCTTTGAAATTTCACCCATGTCTTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATG
66 GAATATCCCTTTGAAATTTCACCCATGTCTTTAAAAATTCTCTAAAACGAAGGTAATACTCGATG
22797667 TTTGGCAATTCGGGGAATCGTGC
1 TTTGGCAATTC-GGGAATCGTGC
22797690 TGGATTGCGA
Statistics
Matches: 136, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
130 40 0.29
131 83 0.61
132 13 0.10
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (130 bp):
TTTGGCAATTCGGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCATTCGCTCAAAACAATC
GAATATCCCTTTGAAATTTCACCCATGTCTTTAAAAATTCTCTAAAACGAAGGTAATACTCGATG
Found at i:22800432 original size:7 final size:7
Alignment explanation
Indices: 22800420--22800444 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22800410 CTCTCTTTTA
22800420 TCTCAAC
1 TCTCAAC
22800427 TCTCAAC
1 TCTCAAC
22800434 TCTCAAC
1 TCTCAAC
22800441 TCTC
1 TCTC
22800445 TTCTACTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.44, G:0.00, T:0.32
Consensus pattern (7 bp):
TCTCAAC
Found at i:22802793 original size:16 final size:17
Alignment explanation
Indices: 22802768--22802800 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
22802758 TATAATCTAT
*
22802768 ATAAATAAAATA-AAAA
1 ATAAAAAAAATACAAAA
22802784 ATAAAAAAAATACAAAA
1 ATAAAAAAAATACAAAA
22802801 GAGTATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (17 bp):
ATAAAAAAAATACAAAA
Found at i:22808647 original size:21 final size:22
Alignment explanation
Indices: 22808618--22808664 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
22808608 CAGAAGGAGT
*
22808618 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
22808640 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
22808661 GAGT
1 GAGT
22808665 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:22810883 original size:31 final size:30
Alignment explanation
Indices: 22810826--22810884 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
22810816 TTGATATATG
*
22810826 AATTTTGATATGGTTCAACTGCATACATGA
1 AATTTTGATATGGTTCAACTACATACATGA
*
22810856 AATTTTGA-ATGTGTTTCAACTATATACAT
1 AATTTTGATATG-G-TTCAACTACATACAT
22810885 CACTTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 3 0.12
30 9 0.36
31 13 0.52
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.41
Consensus pattern (30 bp):
AATTTTGATATGGTTCAACTACATACATGA
Found at i:22811064 original size:19 final size:19
Alignment explanation
Indices: 22811040--22811077 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
22811030 GTTTACATTT
22811040 CACATTTAACCAAATTTGA
1 CACATTTAACCAAATTTGA
22811059 CACATTTAACCAAATTTGA
1 CACATTTAACCAAATTTGA
22811078 TGTATGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.32
Consensus pattern (19 bp):
CACATTTAACCAAATTTGA
Found at i:22813657 original size:54 final size:54
Alignment explanation
Indices: 22813564--22813671 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 54
22813554 AATCTCACCA
* *
22813564 TTTTTTTTTTCTTTTTCCCTTCAATCTGTTTACCTTTTAACTTTTAGGCTTTAT
1 TTTTTTTTTTCCTTTTCCCTTCAATCTGTTTACCCTTTAACTTTTAGGCTTTAT
* *
22813618 TTTTTTTTTTCCTTTTCCC-TCAATCTGTTTTGCCCTTTAACTTTTATGCTTTAT
1 TTTTTTTTTTCCTTTTCCCTTCAATCTG-TTTACCCTTTAACTTTTAGGCTTTAT
22813672 CCCCATCTGC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
53 8 0.16
54 41 0.84
ACGTcount: A:0.12, C:0.20, G:0.06, T:0.62
Consensus pattern (54 bp):
TTTTTTTTTTCCTTTTCCCTTCAATCTGTTTACCCTTTAACTTTTAGGCTTTAT
Found at i:22822589 original size:9 final size:10
Alignment explanation
Indices: 22822573--22822601 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
22822563 TTTGCATTTC
22822573 CTTTTTTTTT
1 CTTTTTTTTT
22822583 CTTTTTTTTT
1 CTTTTTTTTT
22822593 CTTTTTTTT
1 CTTTTTTTT
22822602 GTACAAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:22823731 original size:31 final size:31
Alignment explanation
Indices: 22823696--22823789 Score: 116
Period size: 31 Copynumber: 3.0 Consensus size: 31
22823686 TAGTCTAGTG
*
22823696 ATTTAAATAAAAATTTTCAAATAATTCAATA
1 ATTTAAATAAAAATTTTTAAATAATTCAATA
* * *
22823727 ATTTAAATTAAAATTTTTGAATAATTTAATA
1 ATTTAAATAAAAATTTTTAAATAATTCAATA
* * * *
22823758 ATTTAAATGAATATTTTTAAATGATCCAATA
1 ATTTAAATAAAAATTTTTAAATAATTCAATA
22823789 A
1 A
22823790 CCATCTTGTG
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 53 1.00
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (31 bp):
ATTTAAATAAAAATTTTTAAATAATTCAATA
Found at i:22824157 original size:88 final size:87
Alignment explanation
Indices: 22823998--22824165 Score: 212
Period size: 88 Copynumber: 1.9 Consensus size: 87
22823988 GTAATTATGC
*** * **
22823998 TTTTTTTTTCACTCAATTGAGCACTTGAACTTTTAAAATACTTCAAAAATGTCCTCAAACTTCTT
1 TTTTTTTTTCACTCAATTGAGCACTTGAACTTTTAAAATACTTCAAAAAAACCCTAAAAAATCTT
22824063 CGAAAAAAATAATTAAGCTCCTA
66 C-AAAAAAATAATTAAGCTCCTA
* * * * *
22824086 TTTTTTTTTCACTCGATTGGGTACTTGAACTTTTAAAATGCATT-AAAAAAACCCTAAAAAATGT
1 TTTTTTTTTCACTCAATTGAGCACTTGAACTTTTAAAATAC-TTCAAAAAAACCCTAAAAAATCT
22824150 TCAAAAAAATAATTAA
65 TCAAAAAAATAATTAA
22824166 ACCCTTGCTC
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
87 14 0.21
88 52 0.76
89 2 0.03
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (87 bp):
TTTTTTTTTCACTCAATTGAGCACTTGAACTTTTAAAATACTTCAAAAAAACCCTAAAAAATCTT
CAAAAAAATAATTAAGCTCCTA
Found at i:22824527 original size:21 final size:20
Alignment explanation
Indices: 22824476--22824537 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 20
22824466 CTTTATAAAA
22824476 TTTTACAAATTTTT-ATACTTT
1 TTTTA-AAATTTTTAATA-TTT
**
22824497 TTTTCTAATTTTTAATATTT
1 TTTTAAAATTTTTAATATTT
**
22824517 TTATTAAAATTAATAATATTT
1 TT-TTAAAATTTTTAATATTT
22824538 ATAGCTTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
20 12 0.36
21 21 0.64
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTAAAATTTTTAATATTT
Found at i:22824713 original size:84 final size:84
Alignment explanation
Indices: 22824602--22824788 Score: 250
Period size: 84 Copynumber: 2.2 Consensus size: 84
22824592 AGGGCTTTTT
* * * *
22824602 TTTTTTGAAAAAGTTTGAGGATTTTTTTATACATTTTAAAAATTTAAATATCTAATTGAGTGAAA
1 TTTTTT-AAAAA-TTTGAGGACTTTTTTATACATTTTAAAAATTTAAATATCCAAATGAATGAAA
*
22824667 AAAATAAGGACTTAATTA-AA
64 AAAACAAGGACTTAATTATAA
* * *
22824687 TTTTTTAAAATATTTGAGGGCTTTTTTATATATTTTAAAATTTTAAATATCCAAATGAATGAAAA
1 TTTTTTAAAA-ATTTGAGGACTTTTTTATACATTTTAAAAATTTAAATATCCAAATGAATGAAAA
* *
22824752 AAACAATGACTTAATTATTA
65 AAACAAGGACTTAATTATAA
22824772 TTTTTTAAAAATTTGAG
1 TTTTTTAAAAATTTGAG
22824789 AATCTTTTAC
Statistics
Matches: 90, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
84 72 0.80
85 18 0.20
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.43
Consensus pattern (84 bp):
TTTTTTAAAAATTTGAGGACTTTTTTATACATTTTAAAAATTTAAATATCCAAATGAATGAAAAA
AACAAGGACTTAATTATAA
Found at i:22831823 original size:24 final size:24
Alignment explanation
Indices: 22831790--22831866 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 24
22831780 TATTATAAAA
*
22831790 TTATAATTATATATATTTTAATTT
1 TTATATTTATATATATTTTAATTT
* *
22831814 TTATATTTATATTTATTTATAATTC
1 TTATATTTATATATATTT-TAATTT
* * * *
22831839 CTATATTTTATGTATTTTTTATTTT
1 TTATA-TTTATATATATTTTAATTT
22831864 TTA
1 TTA
22831867 GATTAAAAAA
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
24 16 0.39
25 15 0.37
26 10 0.24
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (24 bp):
TTATATTTATATATATTTTAATTT
Found at i:22846114 original size:29 final size:29
Alignment explanation
Indices: 22846054--22846117 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
22846044 TGGTGTATTT
* *
22846054 AAAATTTAATTTTTATATTTTTATTTTGA
1 AAAATTTAATTTTTATATTTTTAATTTAA
22846083 AAAATTT-ATTATTTAT-TTTTTAAATTTAA
1 AAAATTTAATT-TTTATATTTTT-AATTTAA
22846112 AAAATT
1 AAAATT
22846118 AAGTTTAGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 8 0.26
29 23 0.74
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (29 bp):
AAAATTTAATTTTTATATTTTTAATTTAA
Found at i:22849645 original size:70 final size:70
Alignment explanation
Indices: 22849557--22849692 Score: 254
Period size: 70 Copynumber: 1.9 Consensus size: 70
22849547 AAACACAGAG
* *
22849557 GGTATATTTTTATTTATCACAACTTTAGAACACAATGCTCCATGCTCAACCAATGCACAAATATT
1 GGTACATTTTCATTTATCACAACTTTAGAACACAATGCTCCATGCTCAACCAATGCACAAATATT
22849622 TGTAA
66 TGTAA
22849627 GGTACATTTTCATTTATCACAACTTTAGAACACAATGCTCCATGCTCAACCAATGCACAAATATT
1 GGTACATTTTCATTTATCACAACTTTAGAACACAATGCTCCATGCTCAACCAATGCACAAATATT
22849692 T
66 T
22849693 ATAAATTAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (70 bp):
GGTACATTTTCATTTATCACAACTTTAGAACACAATGCTCCATGCTCAACCAATGCACAAATATT
TGTAA
Found at i:22851185 original size:24 final size:23
Alignment explanation
Indices: 22851147--22851203 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
22851137 ATAAAAAGGA
22851147 AATAAAA-AATTACTA-AAACAAAT
1 AATAAAAGAA-TACTAGAAA-AAAT
*
22851170 AATAATAAGAATACTAGTAAAAAT
1 AATAA-AAGAATACTAGAAAAAAT
22851194 AATAAAAGAA
1 AATAAAAGAA
22851204 AGAAAAAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
23 10 0.33
24 16 0.53
25 4 0.13
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.21
Consensus pattern (23 bp):
AATAAAAGAATACTAGAAAAAAT
Found at i:22855035 original size:25 final size:24
Alignment explanation
Indices: 22855007--22855065 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
22854997 CTGTAGAACA
** *
22855007 GGAAGCTTATTCGAGCTATATAACG
1 GGAAGCTTATAAGAGCCATA-AACG
* *
22855032 GGAAGCTCATAAGAGCCATAACCG
1 GGAAGCTTATAAGAGCCATAAACG
22855056 GGAAGCTTAT
1 GGAAGCTTAT
22855066 GTGAGCCAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 12 0.43
25 16 0.57
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (24 bp):
GGAAGCTTATAAGAGCCATAAACG
Found at i:22855071 original size:24 final size:24
Alignment explanation
Indices: 22855007--22855077 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 24
22854997 CTGTAGAACA
*
22855007 GGAAGCTTATTCGAGCTATATAACG
1 GGAAGCTTATT-GAGCCATATAACG
* * *
22855032 GGAAGCTCATAAGAGCCATA-ACCG
1 GGAAGCTTAT-TGAGCCATATAACG
22855056 GGAAGCTTATGTGAGCCA-ATAA
1 GGAAGCTTAT-TGAGCCATATAA
22855078 TAGGTAGCTT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
23 1 0.03
24 19 0.53
25 16 0.44
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (24 bp):
GGAAGCTTATTGAGCCATATAACG
Found at i:22855218 original size:26 final size:24
Alignment explanation
Indices: 22855162--22855243 Score: 65
Period size: 26 Copynumber: 3.2 Consensus size: 24
22855152 GAGAAGCTTT
* *
22855162 TAAGAGCCATTAATCAGGAAGCTCA
1 TAAGA-CCTTTAATCGGGAAGCTCA
*
22855187 CAAAGATCCTTTAATCGGGAAGCTCA
1 -TAAGA-CCTTTAATCGGGAAGCTCA
* * *
22855213 TGAAGAGCTATATATCGGGATGCTCA
1 T-AAGACCTTTA-ATCGGGAAGCTCA
22855239 TAAGA
1 TAAGA
22855244 GCTGCGATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
25 8 0.17
26 38 0.83
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (24 bp):
TAAGACCTTTAATCGGGAAGCTCA
Found at i:22858054 original size:24 final size:25
Alignment explanation
Indices: 22858027--22858074 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22858017 AAGAAAAATT
* * *
22858027 AAAATGTAAAAATTTAATTAAAACA
1 AAAATATAAAAATTAAATAAAAACA
22858052 AAAATATAAAAATTAAATAAAAA
1 AAAATATAAAAATTAAATAAAAA
22858075 AACTAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (25 bp):
AAAATATAAAAATTAAATAAAAACA
Found at i:22862352 original size:20 final size:19
Alignment explanation
Indices: 22862316--22862366 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
22862306 AAGGGTTATT
*
22862316 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
22862335 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
22862355 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
22862367 GTTTCTGTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:22863859 original size:29 final size:29
Alignment explanation
Indices: 22863817--22863886 Score: 140
Period size: 29 Copynumber: 2.4 Consensus size: 29
22863807 TTAAAAGGTC
22863817 ACACGCCCGTGTGCCTCACACGACCTTAG
1 ACACGCCCGTGTGCCTCACACGACCTTAG
22863846 ACACGCCCGTGTGCCTCACACGACCTTAG
1 ACACGCCCGTGTGCCTCACACGACCTTAG
22863875 ACACGCCCGTGT
1 ACACGCCCGTGT
22863887 ATCTAAGCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.20, C:0.41, G:0.21, T:0.17
Consensus pattern (29 bp):
ACACGCCCGTGTGCCTCACACGACCTTAG
Found at i:22872033 original size:27 final size:27
Alignment explanation
Indices: 22872003--22872057 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
22871993 AGCTTATAAT
22872003 AGCTTCGATATCTATAAAATAATGCAA
1 AGCTTCGATATCTATAAAATAATGCAA
22872030 AGCTTCGATATCTATAAAATAATGCAA
1 AGCTTCGATATCTATAAAATAATGCAA
22872057 A
1 A
22872058 CACATACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (27 bp):
AGCTTCGATATCTATAAAATAATGCAA
Found at i:22872220 original size:21 final size:21
Alignment explanation
Indices: 22872195--22872259 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
22872185 CAATGAGCTT
22872195 CACATACATAGTATCATCTAC
1 CACATACATAGTATCATCTAC
* *
22872216 CACAT--A-GGTATC--GTAC
1 CACATACATAGTATCATCTAC
*
22872232 ATACATACATAGTATCATCTAC
1 -CACATACATAGTATCATCTAC
22872254 CACATA
1 CACATA
22872260 GGTATCGTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
16 3 0.09
17 4 0.12
18 5 0.16
19 2 0.06
20 5 0.16
21 10 0.31
22 3 0.09
ACGTcount: A:0.38, C:0.26, G:0.08, T:0.28
Consensus pattern (21 bp):
CACATACATAGTATCATCTAC
Found at i:22872222 original size:17 final size:18
Alignment explanation
Indices: 22872200--22872265 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
22872190 AGCTTCACAT
22872200 ACATA-GTATCATCTACC
1 ACATAGGTATCATCTACC
* *
22872217 ACATAGGTATCGTACATACAT
1 ACATAGGTATCAT-C-TAC-C
22872238 ACATA-GTATCATCTACC
1 ACATAGGTATCATCTACC
22872255 ACATAGGTATC
1 ACATAGGTATC
22872266 GTACATACCT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
17 10 0.25
18 14 0.35
19 2 0.05
20 9 0.22
21 5 0.12
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (18 bp):
ACATAGGTATCATCTACC
Found at i:22872242 original size:38 final size:38
Alignment explanation
Indices: 22872196--22872273 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
22872186 AATGAGCTTC
22872196 ACATACATAGTATCATCTACCACATAGGTATCGTACAT
1 ACATACATAGTATCATCTACCACATAGGTATCGTACAT
22872234 ACATACATAGTATCATCTACCACATAGGTATCGTACAT
1 ACATACATAGTATCATCTACCACATAGGTATCGTACAT
22872272 AC
1 AC
22872274 CTGAATCTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.28
Consensus pattern (38 bp):
ACATACATAGTATCATCTACCACATAGGTATCGTACAT
Found at i:22881100 original size:13 final size:13
Alignment explanation
Indices: 22881082--22881106 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22881072 AAGTAAACGC
22881082 ACACGGGCGTGTT
1 ACACGGGCGTGTT
22881095 ACACGGGCGTGT
1 ACACGGGCGTGT
22881107 CCCTACCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:22886799 original size:39 final size:39
Alignment explanation
Indices: 22886641--22886800 Score: 275
Period size: 39 Copynumber: 4.1 Consensus size: 39
22886631 AATTATATTA
* *
22886641 CCAGCACAAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
22886680 CCTGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
22886719 CTAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
22886758 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
22886797 CCAG
1 CCAG
22886801 TATCTTGCAT
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:22899870 original size:21 final size:21
Alignment explanation
Indices: 22899846--22899911 Score: 98
Period size: 21 Copynumber: 3.0 Consensus size: 21
22899836 AAATGACGAA
22899846 AAAGAAACAAGAACGTGCTAC
1 AAAGAAACAAGAACGTGCTAC
22899867 AAAGAAACAAGAACGTGCTAC
1 AAAGAAACAAGAACGTGCTAC
22899888 AAAGAGCATACAAG-ACGTGCTAC
1 AAAGA--A-ACAAGAACGTGCTAC
22899911 A
1 A
22899912 GAGAGTAGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
21 26 0.62
23 11 0.26
24 5 0.12
ACGTcount: A:0.50, C:0.20, G:0.20, T:0.11
Consensus pattern (21 bp):
AAAGAAACAAGAACGTGCTAC
Found at i:22900736 original size:16 final size:15
Alignment explanation
Indices: 22900707--22900735 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
22900697 AAAAGTTATA
22900707 AAATATTAAAAAAAT
1 AAATATTAAAAAAAT
22900722 AAATATTAAAAAAA
1 AAATATTAAAAAAA
22900736 ACTTTGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATATTAAAAAAAT
Found at i:22900971 original size:16 final size:16
Alignment explanation
Indices: 22900946--22900985 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
22900936 TGTATAAAAC
*
22900946 AATTAAAATTAAAATA
1 AATTATAATTAAAATA
*
22900962 AATTATAATTAAAATC
1 AATTATAATTAAAATA
22900978 AATTATAA
1 AATTATAA
22900986 ATATTTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
AATTATAATTAAAATA
Found at i:22911922 original size:155 final size:155
Alignment explanation
Indices: 22911640--22911945 Score: 567
Period size: 155 Copynumber: 2.0 Consensus size: 155
22911630 TGAAGGCCTT
* *
22911640 GAAGAGCGAGTCTACTTTGCTGCTCTGGAGTTATTCAACAATCCTAATGCTAGAGAAATATTCTT
1 GAAGAGCGAGTCTACTTTGCTGCTCTGGAGCTATTCAACAATCCAAATGCTAGAGAAATATTCTT
22911705 GTCTCTCAAAGGAGATAAGCGCTTGACTTGGTTGCACTGCAAGTGCGTTGCTCCATCCAATGCAC
66 GTCTCTCAAAGGAGATAAGCGCTTGACTTGGTTGCACTGCAAGTGCGTTGCTCCATCCAATGCAC
22911770 TAGAGTGATAGAAGGCAACATTTTA
131 TAGAGTGATAGAAGGCAACATTTTA
* *
22911795 GAAGAGCGAGTCTACTTTGCTGCTCTGGAGCTATTCAACAATCCAAATGCTAGAGAAATGTTTTT
1 GAAGAGCGAGTCTACTTTGCTGCTCTGGAGCTATTCAACAATCCAAATGCTAGAGAAATATTCTT
*
22911860 GTCTCTCAAAGGAGATAAGCGCTTGACTTGGTTGCACTGCAAGTGCGTTGCTTCATCCAATGCAC
66 GTCTCTCAAAGGAGATAAGCGCTTGACTTGGTTGCACTGCAAGTGCGTTGCTCCATCCAATGCAC
22911925 TAGAGTGATAGAAGGCAACAT
131 TAGAGTGATAGAAGGCAACAT
22911946 CTTATTGTTT
Statistics
Matches: 146, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
155 146 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (155 bp):
GAAGAGCGAGTCTACTTTGCTGCTCTGGAGCTATTCAACAATCCAAATGCTAGAGAAATATTCTT
GTCTCTCAAAGGAGATAAGCGCTTGACTTGGTTGCACTGCAAGTGCGTTGCTCCATCCAATGCAC
TAGAGTGATAGAAGGCAACATTTTA
Found at i:22912915 original size:207 final size:206
Alignment explanation
Indices: 22912560--22912976 Score: 816
Period size: 207 Copynumber: 2.0 Consensus size: 206
22912550 AAAACTGATA
22912560 AAGTAATCTGAATATCTCTTTATCAAAAGATTTGGGCAAATGCAATGCAAAATCTAAACGAAAGT
1 AAGTAATCTGAATATCTCTTTATCAAAAGATTTGGGCAAATGCAATGCAAAATCTAAACGAAAGT
22912625 GTTTTTTATTATCTTGATGGGTGTGGATGCGCCTTATTTGAGAGGCATACATAAATAAAATGTAA
66 GTTTTTTATTATCTTGATGGGTGTGGATGCGCCTTATTTGAGAGGCATACATAAATAAAATGTAA
*
22912690 ATAATACTTAAGGCTACAACCTTAAGAACTGCTACCCTTTCTTTTTCAGGAATAGGAGTCAAGTA
131 ATAATACTTAAGGCTACAACCTTAAGAACTGCTACCC-TTCCTTTTCAGGAATAGGAGTCAAGTA
22912755 GGTAAGGAGAAC
195 GGTAAGGAGAAC
22912767 AAGTAATCTGAATATCTCTTTATCAAAAGATTTGGGCAAATGCAATGCAAAATCTAAACGAAAGT
1 AAGTAATCTGAATATCTCTTTATCAAAAGATTTGGGCAAATGCAATGCAAAATCTAAACGAAAGT
22912832 GTTTTTTATTATCTTGATGGGTGTGGATGCGCCTTATTTGAGAGGCATACATAAATAAAATGTAA
66 GTTTTTTATTATCTTGATGGGTGTGGATGCGCCTTATTTGAGAGGCATACATAAATAAAATGTAA
22912897 ATAATACTTAAGGCTACAACCTTAAGAACTGCTACCCTTCCTTTTCAGGAATAGGAGTCAAGTAG
131 ATAATACTTAAGGCTACAACCTTAAGAACTGCTACCCTTCCTTTTCAGGAATAGGAGTCAAGTAG
22912962 GTAAGGAGAAC
196 GTAAGGAGAAC
22912973 AAGT
1 AAGT
22912977 TCATCTCCAC
Statistics
Matches: 209, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
206 42 0.20
207 167 0.80
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (206 bp):
AAGTAATCTGAATATCTCTTTATCAAAAGATTTGGGCAAATGCAATGCAAAATCTAAACGAAAGT
GTTTTTTATTATCTTGATGGGTGTGGATGCGCCTTATTTGAGAGGCATACATAAATAAAATGTAA
ATAATACTTAAGGCTACAACCTTAAGAACTGCTACCCTTCCTTTTCAGGAATAGGAGTCAAGTAG
GTAAGGAGAAC
Found at i:22916098 original size:28 final size:26
Alignment explanation
Indices: 22916059--22916113 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 26
22916049 ACACTTTGTA
22916059 TATTTAAAATTTAGT-ATTTCTATTTT
1 TATTTAAAATTTAGTCA-TTCTATTTT
22916085 TATTTCAAGAATTTAGTCATTCTATTTT
1 TATTT-AA-AATTTAGTCATTCTATTTT
22916113 T
1 T
22916114 CAAATTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 5 0.19
27 2 0.08
28 18 0.69
29 1 0.04
ACGTcount: A:0.29, C:0.07, G:0.05, T:0.58
Consensus pattern (26 bp):
TATTTAAAATTTAGTCATTCTATTTT
Found at i:22918061 original size:11 final size:11
Alignment explanation
Indices: 22918047--22918087 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
22918037 TGTTTTCTCC
22918047 CTATTTTGCTA
1 CTATTTTGCTA
*
22918058 CTATTTTACTA
1 CTATTTTGCTA
* *
22918069 TTATATTGCTA
1 CTATTTTGCTA
22918080 CTATTTTG
1 CTATTTTG
22918088 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:22918332 original size:12 final size:12
Alignment explanation
Indices: 22918311--22918345 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
22918301 TATATATTTT
*
22918311 AAAATTATATAA
1 AAAATAATATAA
22918323 AAAATAATATAA
1 AAAATAATATAA
*
22918335 AAATTAATATA
1 AAAATAATATA
22918346 GGCGGGCCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:22920653 original size:12 final size:12
Alignment explanation
Indices: 22920636--22920660 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22920626 AAGTAGGAGT
22920636 AGGGTGGACAGC
1 AGGGTGGACAGC
22920648 AGGGTGGACAGC
1 AGGGTGGACAGC
22920660 A
1 A
22920661 TCCTCTAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.48, T:0.08
Consensus pattern (12 bp):
AGGGTGGACAGC
Found at i:22925255 original size:15 final size:15
Alignment explanation
Indices: 22925237--22925277 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
22925227 ACTAGCCCTT
*
22925237 GTGTGACAAACGACC
1 GTGTGTCAAACGACC
22925252 GTGTGTCAAACGACC
1 GTGTGTCAAACGACC
22925267 GTGTGTCAAAC
1 GTGTGTCAAAC
22925278 TGTGTGATGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (15 bp):
GTGTGTCAAACGACC
Found at i:22928560 original size:47 final size:46
Alignment explanation
Indices: 22928503--22928593 Score: 146
Period size: 47 Copynumber: 2.0 Consensus size: 46
22928493 AAATCACAAT
22928503 GATGCCATATCCCAAATATGGTCTTACACAAAAGCACATATATCACC
1 GATGCCATATCCCAAATATGGTCTTACACAAAAGCACATA-ATCACC
* * *
22928550 GATGCCATATCCCATATATGGTCTTATACAGAAGCACATAATCA
1 GATGCCATATCCCAAATATGGTCTTACACAAAAGCACATAATCA
22928594 AATCTCACCG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
46 4 0.10
47 37 0.90
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25
Consensus pattern (46 bp):
GATGCCATATCCCAAATATGGTCTTACACAAAAGCACATAATCACC
Found at i:22930904 original size:111 final size:112
Alignment explanation
Indices: 22930702--22930905 Score: 322
Period size: 111 Copynumber: 1.8 Consensus size: 112
22930692 TTTCTTTTCA
* * *
22930702 TTTTTTTGCTTAAGAATATATTGAACCTTTTGATGCGAAGAGAGATGATAGCCAAGCACCCTACC
1 TTTTTTTGCTTAAAAATATATTAAACCTTTTGATGCGAAGAGAGATGACAGCCAAGCACCCTACC
*
22930767 CCGGTTACTCAGCCCAACATACTCCTAATTTATTATATTTATATATG
66 CCGGTTACTCAGCCCAACACACTCCTAATTTATTATATTTATATATG
22930814 TTTTTTT-CTTAAAAATATATTAAACCTTTTGATGCGAAGAGAGATGACAGCCAAGCA-CCTCAC
1 TTTTTTTGCTTAAAAATATATTAAACCTTTTGATGCGAAGAGAGATGACAGCCAAGCACCCT-AC
* * *
22930877 CCTGGTTACTTAGCCCAACACATTCCTAA
65 CCCGGTTACTCAGCCCAACACACTCCTAA
22930906 AAAATTTTTC
Statistics
Matches: 84, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
110 3 0.04
111 74 0.88
112 7 0.08
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (112 bp):
TTTTTTTGCTTAAAAATATATTAAACCTTTTGATGCGAAGAGAGATGACAGCCAAGCACCCTACC
CCGGTTACTCAGCCCAACACACTCCTAATTTATTATATTTATATATG
Found at i:22932977 original size:10 final size:11
Alignment explanation
Indices: 22932961--22932990 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
22932951 GGATTTTGAG
22932961 AAAAATAAAAT
1 AAAAATAAAAT
22932972 -AAAATAAAAT
1 AAAAATAAAAT
22932982 AAAAATAAA
1 AAAAATAAA
22932991 CAAAATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:22945255 original size:36 final size:36
Alignment explanation
Indices: 22945214--22945289 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
22945204 ATAGGAATGA
** * *
22945214 GAAATATTTAGAAATTATTATAGTTTTCTCCAAAAT
1 GAAATATGGAGAAATGAATATAGTTTTCTCCAAAAT
* *
22945250 GAAATATGGAGAAATGAATGTGGTTTTCTCCAAAAT
1 GAAATATGGAGAAATGAATATAGTTTTCTCCAAAAT
22945286 GAAA
1 GAAA
22945290 ATAAAGATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (36 bp):
GAAATATGGAGAAATGAATATAGTTTTCTCCAAAAT
Found at i:22947877 original size:5 final size:5
Alignment explanation
Indices: 22947867--22947914 Score: 53
Period size: 5 Copynumber: 9.4 Consensus size: 5
22947857 ATAAAGAATA
* *
22947867 ATATT ATATT ATATC ATATT AT-TAT ATTATT ATATT ATAAT ATATT AT
1 ATATT ATATT ATATT ATATT ATAT-T A-TATT ATATT ATATT ATATT AT
22947915 TATCATTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
4 1 0.03
5 31 0.86
6 3 0.08
7 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:22947895 original size:8 final size:8
Alignment explanation
Indices: 22947868--22947922 Score: 65
Period size: 8 Copynumber: 6.2 Consensus size: 8
22947858 TAAAGAATAA
22947868 TATTATAT
1 TATTATAT
22947876 TATATCATAT
1 TAT-T-ATAT
22947886 TATTATAT
1 TATTATAT
22947894 TATTATAT
1 TATTATAT
22947902 TATAATATAT
1 TAT--TATAT
22947912 TATTATCAT
1 TATTAT-AT
22947921 TA
1 TA
22947923 AATATAAAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
8 21 0.50
9 6 0.14
10 15 0.36
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (8 bp):
TATTATAT
Found at i:22947897 original size:26 final size:27
Alignment explanation
Indices: 22947868--22947922 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
22947858 TAAAGAATAA
22947868 TATTATATTAT-ATCATATTATTAT-AT
1 TATTATATTATAAT-ATATTATTATCAT
22947894 TATTATATTATAATATATTATTATCAT
1 TATTATATTATAATATATTATTATCAT
22947921 TA
1 TA
22947923 AATATAAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (27 bp):
TATTATATTATAATATATTATTATCAT
Found at i:22947926 original size:18 final size:18
Alignment explanation
Indices: 22947871--22947928 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
22947861 AGAATAATAT
* *
22947871 TATATTA-TATCATATTAT
1 TATATTATTATCAT-TAAA
22947889 TATATTATTAT-ATTATAA
1 TATATTATTATCATTA-AA
22947907 TATATTATTATCATTAAA
1 TATATTATTATCATTAAA
22947925 TATA
1 TATA
22947929 AAACAAAGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 1 0.03
18 27 0.77
19 7 0.20
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
TATATTATTATCATTAAA
Found at i:22948003 original size:14 final size:15
Alignment explanation
Indices: 22947984--22948020 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
22947974 CAGGGGAATG
22947984 AAAGAAAGAAA-AAA
1 AAAGAAAGAAAGAAA
22947998 AAAGAAAGAAAGAAA
1 AAAGAAAGAAAGAAA
*
22948013 AAGGAAAG
1 AAAGAAAG
22948021 GGAAAATAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (15 bp):
AAAGAAAGAAAGAAA
Found at i:22958859 original size:19 final size:19
Alignment explanation
Indices: 22958831--22958868 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
22958821 CAGCTGCTGC
22958831 CATTTAGTTCATTTTGGTT
1 CATTTAGTTCATTTTGGTT
* *
22958850 CATTTTGTTCTTTTTGGTT
1 CATTTAGTTCATTTTGGTT
22958869 GTTGTAATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.11, C:0.11, G:0.16, T:0.63
Consensus pattern (19 bp):
CATTTAGTTCATTTTGGTT
Found at i:22962291 original size:22 final size:22
Alignment explanation
Indices: 22962266--22962315 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
22962256 AAATGGTAAC
* *
22962266 AAAAAAGTGAG-AAAATAACAAG
1 AAAAAAGT-AGCAAAACAACAAA
*
22962288 AAAATAGTAGCAAAACAACAAA
1 AAAAAAGTAGCAAAACAACAAA
22962310 AAAAAA
1 AAAAAA
22962316 ATAGAATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.72, C:0.08, G:0.12, T:0.08
Consensus pattern (22 bp):
AAAAAAGTAGCAAAACAACAAA
Found at i:22963022 original size:31 final size:31
Alignment explanation
Indices: 22962982--22963052 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
22962972 AAAATTTCAA
* * ** *
22962982 AATTCAAAAAGTATAAGGACTAAAATTGATC
1 AATTTAAAAAATATAAAAACTAAAACTGATC
*
22963013 AATTTAAAAAATATAAAAACTAAAACTGATG
1 AATTTAAAAAATATAAAAACTAAAACTGATC
*
22963044 AAATTAAAA
1 AATTTAAAA
22963053 TAAATTACTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.59, C:0.07, G:0.08, T:0.25
Consensus pattern (31 bp):
AATTTAAAAAATATAAAAACTAAAACTGATC
Found at i:22963314 original size:12 final size:12
Alignment explanation
Indices: 22963297--22963330 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
22963287 TAGCCCGCCC
22963297 ATATTAATTTTT
1 ATATTAATTTTT
*
22963309 ATATTATTTTTT
1 ATATTAATTTTT
22963321 ATA-TAATTTT
1 ATATTAATTTT
22963331 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:22963615 original size:14 final size:14
Alignment explanation
Indices: 22963598--22963627 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
22963588 ATAATGAGAA
22963598 AACAATAAGGAAAC
1 AACAATAAGGAAAC
22963612 AACAATAAGGAAAC
1 AACAATAAGGAAAC
22963626 AA
1 AA
22963628 TATTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.67, C:0.13, G:0.13, T:0.07
Consensus pattern (14 bp):
AACAATAAGGAAAC
Found at i:22964109 original size:25 final size:25
Alignment explanation
Indices: 22964051--22964115 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
22964041 TTTTTCATCA
22964051 TATTATT-AAATTTATATTTAAAAAT
1 TATTATTAAAATTTA-ATTTAAAAAT
*
22964076 AATTA-TAAAATTTAATTT-AAAAT
1 TATTATTAAAATTTAATTTAAAAAT
*
22964099 TATTAATTAAAAATTAA
1 TATT-ATTAAAATTTAA
22964116 AATGAAATAG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 8 0.24
24 6 0.18
25 20 0.59
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
TATTATTAAAATTTAATTTAAAAAT
Found at i:22969517 original size:6 final size:6
Alignment explanation
Indices: 22969502--22969535 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
22969492 AAAATTATAA
* *
22969502 ATTTCT ATTTTC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
22969536 TTAGAACCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.18, C:0.24, G:0.00, T:0.59
Consensus pattern (6 bp):
ATTTCC
Found at i:22971472 original size:35 final size:35
Alignment explanation
Indices: 22971394--22971464 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
22971384 ATATATAAGC
*
22971394 TCAATATAAACTCACATGTAACCAAATACACATGT
1 TCAATATAAACTCACATGTAACCAAATACACAAGT
* * *
22971429 TCAATATAAATTCACATGTAACCGAATACTCAAGT
1 TCAATATAAACTCACATGTAACCAAATACACAAGT
22971464 T
1 T
22971465 TGATATAAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (35 bp):
TCAATATAAACTCACATGTAACCAAATACACAAGT
Found at i:22971643 original size:38 final size:41
Alignment explanation
Indices: 22971600--22971691 Score: 109
Period size: 42 Copynumber: 2.3 Consensus size: 41
22971590 CGGTATAAAA
*
22971600 CCTGCTAGGCATAA-GCCT-AATTCAA-CACTGGCACAAAG
1 CCTGCTAGGCACAAGGCCTAAATTCAATCACTGGCACAAAG
* * * *
22971638 CCTGCTAGACCCAAGGTCTGAAATTCAATCACTGGCACTAAG
1 CCTGCTAGGCACAAGGCCT-AAATTCAATCACTGGCACAAAG
22971680 CCTGCTAGGCAC
1 CCTGCTAGGCAC
22971692 GAAGCCCGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
38 11 0.26
39 3 0.07
41 7 0.16
42 22 0.51
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (41 bp):
CCTGCTAGGCACAAGGCCTAAATTCAATCACTGGCACAAAG
Found at i:22979085 original size:35 final size:35
Alignment explanation
Indices: 22979007--22979077 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
22978997 ATATATAAGC
*
22979007 TCAATATAAACTCACAGGTAACCAAATACACATGT
1 TCAATATAAACTCACAGGTAACCAAATACACAAGT
* * * *
22979042 TCAATATAAATTCACATGTAACCGAATACTCAAGT
1 TCAATATAAACTCACAGGTAACCAAATACACAAGT
22979077 T
1 T
22979078 TGATATAAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (35 bp):
TCAATATAAACTCACAGGTAACCAAATACACAAGT
Found at i:22983365 original size:25 final size:25
Alignment explanation
Indices: 22983331--22983383 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
22983321 AAAATATTTG
22983331 AAATATTTTAATAAAACTTAATATA
1 AAATATTTTAATAAAACTTAATATA
* * *
22983356 AAATATTTTAATATAATTTGATATA
1 AAATATTTTAATAAAACTTAATATA
22983381 AAA
1 AAA
22983384 CTAAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (25 bp):
AAATATTTTAATAAAACTTAATATA
Found at i:22983525 original size:60 final size:58
Alignment explanation
Indices: 22983416--22983550 Score: 164
Period size: 60 Copynumber: 2.3 Consensus size: 58
22983406 TTAATATAAA
*
22983416 AATAATTATATTAAAAATGTTATTAAATTATATATTATTTTTATTAAATTATATTTAAT
1 AATAATTATATTAAAAATG-TATTAAAGTATATATTATTTTTATTAAATTATATTTAAT
* * * *
22983475 AATAATTATATTGAAATATG-ATTAAAGTATTTATTTTTATTTTATTAAATTATTTTTAAT
1 AATAATTATATT-AAAAATGTATTAAAGTATATA-TTAT-TTTTATTAAATTATATTTAAT
**
22983535 AATAATCCTATTAAAA
1 AATAATTATATTAAAA
22983551 TTTAATAACA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
58 11 0.17
59 18 0.28
60 36 0.55
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (58 bp):
AATAATTATATTAAAAATGTATTAAAGTATATATTATTTTTATTAAATTATATTTAAT
Found at i:22994186 original size:25 final size:24
Alignment explanation
Indices: 22994153--22994199 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
22994143 ACAAATTATA
22994153 AAAATAAAA-AAACTAAAATAAAGC
1 AAAATAAAATAAA-TAAAATAAAGC
*
22994177 AAAATCAAAATTAATAAAATAAA
1 AAAAT-AAAATAAATAAAATAAA
22994200 AAAGGTATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 5 0.25
25 13 0.65
26 2 0.10
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.17
Consensus pattern (24 bp):
AAAATAAAATAAATAAAATAAAGC
Found at i:22994373 original size:31 final size:32
Alignment explanation
Indices: 22994312--22994377 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
22994302 AAAAAATCAT
**
22994312 TTTGACTCTTTTTAAAAATGTTGATGGTCAAA
1 TTTGACTCTTTTTAAAAATGTTGAAAGTCAAA
*
22994344 TTTGATTCTTTTTAAAAA-GTTGAAAGTCAAA
1 TTTGACTCTTTTTAAAAATGTTGAAAGTCAAA
22994375 TTT
1 TTT
22994378 AGCTAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
31 14 0.45
32 17 0.55
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (32 bp):
TTTGACTCTTTTTAAAAATGTTGAAAGTCAAA
Found at i:22995287 original size:23 final size:25
Alignment explanation
Indices: 22995261--22995307 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
22995251 TATCATTCAT
*
22995261 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
22995284 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
22995308 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:22995736 original size:46 final size:46
Alignment explanation
Indices: 22995568--22995787 Score: 242
Period size: 46 Copynumber: 5.0 Consensus size: 46
22995558 TTTAACGTGA
* * * * * * *
22995568 TGCCATAGTGTCTTTCAACTATGGTCGTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
22995614 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
22995660 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
22995706 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
22995744 TGCCATGGTATCTTGCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
22995788 AGAGCACACT
Statistics
Matches: 151, Mismatches: 14, Indels: 18
0.83 0.08 0.10
Matches are distributed among these distances:
38 32 0.21
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 105 0.70
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:22995752 original size:38 final size:38
Alignment explanation
Indices: 22995701--22995776 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
22995691 CATCTCATAT
*
22995701 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTGCAACCATGGTCTTACACA
22995739 CAGGTTGCCATGGTATCTTGCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTGCAACCATGGTCTTACACA
22995777 TTTCATATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTGCAACCATGGTCTTACACA
Found at i:23002779 original size:21 final size:21
Alignment explanation
Indices: 23002755--23002812 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
23002745 CAAAAAATAG
*
23002755 AATTTATAAAAGTTATAAAAA
1 AATTTATAAAAATTATAAAAA
* *
23002776 AATTTACAAAAAATAT-AAAA
1 AATTTATAAAAATTATAAAAA
23002796 AATTT-TAAAAATTATAA
1 AATTTATAAAAATTATAA
23002813 TAATTAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 8 0.26
20 10 0.32
21 13 0.42
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (21 bp):
AATTTATAAAAATTATAAAAA
Found at i:23002804 original size:10 final size:10
Alignment explanation
Indices: 23002755--23002806 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
23002745 CAAAAAATAG
*
23002755 AATTTATAAA
1 AATTTAAAAA
*
23002765 AGTTATAAAAA
1 AATT-TAAAAA
23002776 AATTTACAAAA
1 AATTTA-AAAA
*
23002787 AATATAAAAA
1 AATTTAAAAA
*
23002797 ATTTTAAAAA
1 AATTTAAAAA
23002807 TTATAATAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 17 0.50
11 17 0.50
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (10 bp):
AATTTAAAAA
Found at i:23002834 original size:17 final size:17
Alignment explanation
Indices: 23002784--23002836 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
23002774 AAAATTTACA
*
23002784 AAAAATATAAAAAATTTT
1 AAAAATATAAAAAA-ATT
* *
23002802 AAAAAT-TATAATAATT
1 AAAAATATAAAAAAATT
23002818 AAAAATATAAAAAAATT
1 AAAAATATAAAAAAATT
23002835 AA
1 AA
23002837 GCTTAATATA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 8 0.28
17 15 0.52
18 6 0.21
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAAATATAAAAAAATT
Found at i:23003387 original size:9 final size:9
Alignment explanation
Indices: 23003359--23003423 Score: 60
Period size: 9 Copynumber: 7.0 Consensus size: 9
23003349 ACTCTTTTAC
*
23003359 ATAATTTTAA
1 ATAATTTT-T
23003369 ATAA-TTTT
1 ATAATTTTT
23003377 ATAATTTTT
1 ATAATTTTT
*
23003386 ATATTTTTT
1 ATAATTTTT
*
23003395 ATATTTTTT
1 ATAATTTTT
*
23003404 GTAATTTTT
1 ATAATTTTT
23003413 AATATATTTTT
1 -ATA-ATTTTT
23003424 TTCAATTTGT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
8 4 0.09
9 31 0.66
10 6 0.13
11 6 0.13
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (9 bp):
ATAATTTTT
Found at i:23003394 original size:18 final size:18
Alignment explanation
Indices: 23003369--23003438 Score: 61
Period size: 18 Copynumber: 3.8 Consensus size: 18
23003359 ATAATTTTAA
*
23003369 ATAA-TTTTATAATTTTT
1 ATAATTTTTATATTTTTT
*
23003386 ATATTTTTTATATTTTTT
1 ATAATTTTTATATTTTTT
*
23003404 GTAATTTTTAATATATTTTT
1 ATAATTTTT-ATAT-TTTTT
* *
23003424 TTCAATTTGTATATT
1 AT-AATTTTTATATT
23003439 GAAAAAGTCT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
17 3 0.07
18 19 0.44
19 5 0.12
20 10 0.23
21 6 0.14
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (18 bp):
ATAATTTTTATATTTTTT
Found at i:23003403 original size:19 final size:19
Alignment explanation
Indices: 23003373--23003437 Score: 64
Period size: 21 Copynumber: 3.4 Consensus size: 19
23003363 TTTTAAATAA
*
23003373 TTTTATA-ATTTTTAT-AT
1 TTTTATATATTTTTTTAAT
23003390 TTTT-TATATTTTTTGTAAT
1 TTTTATATATTTTTT-TAAT
23003409 TTTTAATATATTTTTTTCAAT
1 TTTT-ATATATTTTTTT-AAT
*
23003430 TTGTATAT
1 TTTTATAT
23003438 TGAAAAAGTC
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
16 2 0.05
17 10 0.25
18 1 0.03
19 6 0.15
20 5 0.12
21 16 0.40
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.69
Consensus pattern (19 bp):
TTTTATATATTTTTTTAAT
Found at i:23005496 original size:3 final size:3
Alignment explanation
Indices: 23005488--23005527 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
23005478 CAAAGATGAG
23005488 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
23005528 AGTGTGTGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:23007916 original size:44 final size:45
Alignment explanation
Indices: 23007800--23007926 Score: 150
Period size: 45 Copynumber: 2.8 Consensus size: 45
23007790 TTGTGACTTG
* * *
23007800 TAGCTTTAATCT-ATTCCACTGCAACTTCAGGGAAATAAGATTCTC
1 TAGCTTCAATCTGA-TCCACTGTAACTTCAGGGAAATAAGATTCAC
* * *
23007845 TATCTTCAATCTGCTCCACTGTAACTTCAGGGAAATAAGATT-AG
1 TAGCTTCAATCTGATCCACTGTAACTTCAGGGAAATAAGATTCAC
* * *
23007889 TGGCTTCTATCTGATCCACTGTAACTTCAGGGAGATAA
1 TAGCTTCAATCTGATCCACTGTAACTTCAGGGAAATAA
23007927 AATTTGCCAT
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 33 0.47
45 37 0.53
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (45 bp):
TAGCTTCAATCTGATCCACTGTAACTTCAGGGAAATAAGATTCAC
Found at i:23008067 original size:45 final size:44
Alignment explanation
Indices: 23008012--23008096 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
23008002 ATTTCACTAC
*
23008012 AACTTCAGGGAAATAAAATTCACTATCTTCAATCTGCTCCATCGT
1 AACTTCAGGGAAATAAAATT-ACTAGCTTCAATCTGCTCCATCGT
* * * * *
23008057 AACTTTAGGGAGATAAGATTAGTGGCTTCAATCTGCTCCA
1 AACTTCAGGGAAATAAAATTACTAGCTTCAATCTGCTCCA
23008097 CTGCAATTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 17 0.50
45 17 0.50
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (44 bp):
AACTTCAGGGAAATAAAATTACTAGCTTCAATCTGCTCCATCGT
Found at i:23008075 original size:190 final size:190
Alignment explanation
Indices: 23007749--23008165 Score: 568
Period size: 190 Copynumber: 2.2 Consensus size: 190
23007739 ATTCCTATGG
* * * * *
23007749 TAGATTTGATCCGACTTTCTGCAACTTTAGAGGTATAAGATTTGTGACTTGTAGCTTTAATCTAT
1 TAGATTTGATCCGACCTACTGCAACTTCAGAGGTATAAGACTTGTAACTTGTAGCTTTAATCTAT
* * *
23007814 TCCACTGCAACTTCAGGGAAATAAGATTCTCTATCTTCAATCTGCTCCACTGTAACTTCAGGGAA
66 TCCACTACAACTTCAGGGAAATAAAATTCACTATCTTCAATCTGCTCCACTGTAACTTCAGGGAA
* * *
23007879 ATAAGATTAGTGGCTTCTATCTGATCCACTGTAACTTCAGGGAGATAAAATTTGCCATGA
131 ATAAGATTAGTGGCTTCAATCTGATCCACTGCAACTTCAAGGAGATAAAATTTGCCATGA
* * * *
23007939 TAGATTTGATCTGACCTACTGTAACTTCAGAGGTCTAGGACTTGTAACTTGTAGCTTTAATCTAT
1 TAGATTTGATCCGACCTACTGCAACTTCAGAGGTATAAGACTTGTAACTTGTAGCTTTAATCTAT
* *
23008004 TTCACTACAACTTCAGGGAAATAAAATTCACTATCTTCAATCTGCTCCA-TCGTAACTTTAGGGA
66 TCCACTACAACTTCAGGGAAATAAAATTCACTATCTTCAATCTGCTCCACT-GTAACTTCAGGGA
* * * *
23008068 GATAAGATTAGTGGCTTCAATCTGCTCCACTGCAATTTCAAGGAGATAAGATTTGCCATGA
130 AATAAGATTAGTGGCTTCAATCTGATCCACTGCAACTTCAAGGAGATAAAATTTGCCATGA
* * * * *
23008129 T-GACTATAATCCGTCCCACTGCAACTTCAGGGGTATA
1 TAGA-TTTGATCCGACCTACTGCAACTTCAGAGGTATA
23008166 GGATTTATGG
Statistics
Matches: 196, Mismatches: 29, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
189 3 0.02
190 193 0.98
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (190 bp):
TAGATTTGATCCGACCTACTGCAACTTCAGAGGTATAAGACTTGTAACTTGTAGCTTTAATCTAT
TCCACTACAACTTCAGGGAAATAAAATTCACTATCTTCAATCTGCTCCACTGTAACTTCAGGGAA
ATAAGATTAGTGGCTTCAATCTGATCCACTGCAACTTCAAGGAGATAAAATTTGCCATGA
Found at i:23016596 original size:19 final size:19
Alignment explanation
Indices: 23016572--23016609 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
23016562 TTCCTGACCC
23016572 GATCTTGAGATCAGTGAAG
1 GATCTTGAGATCAGTGAAG
23016591 GATCTTGAGATCAGTGAAG
1 GATCTTGAGATCAGTGAAG
23016610 CTGTTCTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (19 bp):
GATCTTGAGATCAGTGAAG
Found at i:23020331 original size:3 final size:3
Alignment explanation
Indices: 23020313--23020361 Score: 80
Period size: 3 Copynumber: 15.7 Consensus size: 3
23020303 ATAAATAGAT
23020313 TAA TGAA TAGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
23020360 TA
1 TA
23020362 TAGGCACAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:23027425 original size:39 final size:39
Alignment explanation
Indices: 23027370--23027448 Score: 124
Period size: 39 Copynumber: 2.0 Consensus size: 39
23027360 CAAGACACTA
*
23027370 GAAATGTATCCGGGCTAAAG-TCCTGCAGGCTTCGTGCTG
1 GAAATGTATCCAGGCTAAAGTTCC-GCAGGCTTCGTGCTG
*
23027409 GAAATGTATCCAGGCTAAAGTTCCGCAGGCTTTGTGCTG
1 GAAATGTATCCAGGCTAAAGTTCCGCAGGCTTCGTGCTG
23027448 G
1 G
23027449 TAATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 34 0.92
40 3 0.08
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (39 bp):
GAAATGTATCCAGGCTAAAGTTCCGCAGGCTTCGTGCTG
Found at i:23033883 original size:18 final size:18
Alignment explanation
Indices: 23033860--23033907 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
23033850 AAAATGTGAG
*
23033860 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTC
23033878 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
23033896 AAATGATGTTCA
1 AAATGATGTTCA
23033908 ATTGATGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:23034414 original size:72 final size:72
Alignment explanation
Indices: 23034335--23034671 Score: 419
Period size: 72 Copynumber: 4.7 Consensus size: 72
23034325 CAATGCTAAA
*
23034335 CTAGTTTTATCAATAGTTATTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATTTAT
23034400 GTGTAAT
66 GTGTAAT
* * *
23034407 CTAGTTTTATCAATGGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATTTAT
23034472 GTGTAAT
66 GTGTAAT
* * * * * * *
23034479 CTTGTTCTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGGTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATTTAT
**
23034544 GCT-TAGGG
66 G-TGTA-AT
* * *
23034552 CTAATTTTATCAATAATTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTTTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATTTAT
***
23034617 GCAAAAT
66 GTGTAAT
* * * * *
23034624 -TAGTTTTAACAATTGTTGTTTATATATGA-TTTTGGATATAAAATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGATTTTTGGATATTAAATTTAT
23034672 TCACAGGTGA
Statistics
Matches: 229, Mismatches: 33, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
70 18 0.08
71 23 0.10
72 130 0.57
73 58 0.25
ACGTcount: A:0.26, C:0.06, G:0.15, T:0.54
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATTTAT
GTGTAAT
Found at i:23034610 original size:145 final size:144
Alignment explanation
Indices: 23034346--23034617 Score: 402
Period size: 145 Copynumber: 1.9 Consensus size: 144
23034336 TAGTTTTATC
* * * *
23034346 AATAGTTATTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATTTATGTGTAATCTAG
1 AATAGTTATTTATGTTTGATCTTTGGATATTAAATTTATGGTCTACTTATTTATGTGTAAGCTAA
** * *
23034411 TTTTATCAATGGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTATGTGT
66 TTTTATCAATAATTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATTTATGTGT
23034476 AATCTTGTTCTATT
131 AATCTTGTTCTATT
* * * *
23034490 AATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGGTCTACTTATTTATGCT-TAGGGCT
1 AATAGTTATTTATGTTTGATCTTTGGATATTAAATTTATGGTCTACTTATTTATG-TGTA-AGCT
*
23034554 AATTTTATCAATAATTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTTTACTTATTTATG
64 AATTTTATCAATAATTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATTTATG
23034618 CAAAATTAGT
Statistics
Matches: 113, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
144 52 0.46
145 61 0.54
ACGTcount: A:0.24, C:0.06, G:0.16, T:0.55
Consensus pattern (144 bp):
AATAGTTATTTATGTTTGATCTTTGGATATTAAATTTATGGTCTACTTATTTATGTGTAAGCTAA
TTTTATCAATAATTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATTTATGTGT
AATCTTGTTCTATT
Found at i:23048074 original size:16 final size:16
Alignment explanation
Indices: 23048041--23048081 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
23048031 TGAGTTAAGG
23048041 TTCTACTC-AATTCGA
1 TTCTACTCGAATTCGA
23048056 TTCTACTCGAATTTC-A
1 TTCTACTCGAA-TTCGA
*
23048072 TTCCACTCGA
1 TTCTACTCGA
23048082 CTTGATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 8 0.35
16 12 0.52
17 3 0.13
ACGTcount: A:0.24, C:0.29, G:0.07, T:0.39
Consensus pattern (16 bp):
TTCTACTCGAATTCGA
Found at i:23056102 original size:20 final size:20
Alignment explanation
Indices: 23056079--23056116 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23056069 AATTCATTCA
* *
23056079 TATAACTAGTAGTTCATCTG
1 TATAACCAGTAATTCATCTG
23056099 TATAACCAGTAATTCATC
1 TATAACCAGTAATTCATC
23056117 CGTAATAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (20 bp):
TATAACCAGTAATTCATCTG
Found at i:23056152 original size:40 final size:40
Alignment explanation
Indices: 23056108--23056195 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
23056098 GTATAACCAG
* *
23056108 TAATTCATCCGTAAT-AACAATAATTTATTTATATCAACAA
1 TAATTCATCCGT-ATCAACAATAATTCATTCATATCAACAA
* * * *
23056148 TAATTCATCCGTATCAATAGTAATTCATTCATTTCAACAG
1 TAATTCATCCGTATCAACAATAATTCATTCATATCAACAA
23056188 TAATTCAT
1 TAATTCAT
23056196 TCATTTCAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.05
40 39 0.95
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.39
Consensus pattern (40 bp):
TAATTCATCCGTATCAACAATAATTCATTCATATCAACAA
Found at i:23056162 original size:20 final size:20
Alignment explanation
Indices: 23056108--23056206 Score: 74
Period size: 20 Copynumber: 5.0 Consensus size: 20
23056098 GTATAACCAG
*
23056108 TAATTCATCCGTAAT-AACAA
1 TAATTCATCCAT-ATCAACAA
* **
23056128 TAATTTATTTATATCAACAA
1 TAATTCATCCATATCAACAA
* * *
23056148 TAATTCATCCGTATCAATAG
1 TAATTCATCCATATCAACAA
* * *
23056168 TAATTCATTCATTTCAACAG
1 TAATTCATCCATATCAACAA
* *
23056188 TAATTCATTCATTTCAACA
1 TAATTCATCCATATCAACA
23056207 TAGCTTATTC
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
19 2 0.03
20 62 0.97
ACGTcount: A:0.39, C:0.18, G:0.04, T:0.38
Consensus pattern (20 bp):
TAATTCATCCATATCAACAA
Found at i:23056395 original size:22 final size:22
Alignment explanation
Indices: 23056370--23056483 Score: 72
Period size: 22 Copynumber: 5.0 Consensus size: 22
23056360 CCTAAGCTGA
23056370 TAAATAGTAAGCTCTATTGAGC
1 TAAATAGTAAGCTCTATTGAGC
*
23056392 TAAA-ACGTAAGCTCTATCGAGC
1 TAAATA-GTAAGCTCTATTGAGC
* * *
23056414 TGAACAGTAAGCT-TATACGAGC
1 TAAATAGTAAGCTCTAT-TGAGC
* * * * *
23056436 TGAATCGGTAATCTCCAATGAGC
1 TAAAT-AGTAAGCTCTATTGAGC
23056459 TGTAAATAGTAAGCTCT-TATGAGC
1 --TAAATAGTAAGCTCTAT-TGAGC
23056483 T
1 T
23056484 GATATATCGA
Statistics
Matches: 71, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
21 4 0.06
22 39 0.55
23 11 0.15
24 13 0.18
25 4 0.06
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (22 bp):
TAAATAGTAAGCTCTATTGAGC
Found at i:23058440 original size:13 final size:13
Alignment explanation
Indices: 23058424--23058448 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23058414 CATGTCACAT
23058424 GGGCGTGTCCCTC
1 GGGCGTGTCCCTC
23058437 GGGCGTGTCCCT
1 GGGCGTGTCCCT
23058449 ATCGAGCCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.36, G:0.40, T:0.24
Consensus pattern (13 bp):
GGGCGTGTCCCTC
Found at i:23071851 original size:44 final size:44
Alignment explanation
Indices: 23071801--23071894 Score: 188
Period size: 44 Copynumber: 2.1 Consensus size: 44
23071791 GATTAAAATA
23071801 ATCTCTAGGTTTCTTTGATGAGGAATGATAAGATTTATTCATCG
1 ATCTCTAGGTTTCTTTGATGAGGAATGATAAGATTTATTCATCG
23071845 ATCTCTAGGTTTCTTTGATGAGGAATGATAAGATTTATTCATCG
1 ATCTCTAGGTTTCTTTGATGAGGAATGATAAGATTTATTCATCG
23071889 ATCTCT
1 ATCTCT
23071895 TCCTCGAATC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (44 bp):
ATCTCTAGGTTTCTTTGATGAGGAATGATAAGATTTATTCATCG
Found at i:23077688 original size:696 final size:695
Alignment explanation
Indices: 23076350--23077696 Score: 2297
Period size: 696 Copynumber: 1.9 Consensus size: 695
23076340 GCATTTGGTG
*
23076350 GGCTTCGTGGGATAAATTATGCATGGCGAAGAAGTTTGGCAGAATGGAATTTCATAATCTTCACT
1 GGCTTCGTGGGATAAATTATGCATGGCGAAGAAGTCTGGCAGAATGGAATTTCATAATCTTCACT
* *
23076415 ATTTTAATTTAGCTATGCTTTGTAAGCAAGGTTAGAGTTTTATTTCAATCTCCAGTCTCTTTCTA
66 ATTTTAATTTAGATATGCTTTGTAAGCAAGGTTAGAGTTTTATTTCAATCTCCAGTCTCTTCCTA
23076480 GTAGAATTTTCAAGCTAGATATTTTCTGTGTTGTGGCTTTTTTAAAGCCACAAAGGGCAATAACC
131 GTAGAATTTTCAAGCTAGATATTTTCTGTGTTGTGGCTTTTTTAAAGCCACAAAGGGCAATAACC
* * * * *
23076545 CTTTATTTATATGGAAGAGCATTTTTTCTGTTAAGCATCTCCTCATTATAGTGTTGGATCTGATG
196 CTTCATTTATATGGAAGAGCATTTTTTCTGCTAAGCATCTACTCATTATAGTGTTGAATCCGATG
23076610 CTCTAAGTGTAGTATATTCATTTGTACATTTGTAATTTTTTTGAACAAATTTATTAATAAAATTA
261 CTCTAAGTGTAGTATATTCATTTGTACATTTGTAATTTTTTTGAACAAATTTATTAATAAAATTA
*
23076675 TTCATGAATTACACTAATATTCTTTGTATAATGTCCTCATGTGATTTTTTCATGTAAAGCAAAAT
326 TTCATGAATTACACTAATATTATTTGTATAATGTCCTCATGTGATTTTTTCATGTAAAGCAAAAT
** * *
23076740 AGAAGCAAATATTAGCTCATTGGTTGTTTAATGTTTAACTAATACTGAGCAGTATTACGTGGTTG
391 AGAAAAAAATATTAGCTCATTGGTTGTCTAATATTTAACTAATACTGAGCAGTATTACGTGGTTG
* *
23076805 GATCGTAATGCTAAAAGACAGTTTATATTAGTAGACGGGCCCAAACATGTCATTAGTCTAATCAG
456 GATCATAATGCTAAAAGACAGTTTATATTAGTAGACGGGCCCAAACATGTAATTAGTCTAATCAG
* *
23076870 AAAATAGCAAACCAATTGAATGACTAATATGTTGTCTATCAAGTCCAATTAGAGAGATGCTTTGT
521 AAAATAGAAAACCAATTGAATGACTAATATGTTGTCTATCAAGTCCAATTAGAAAGATGCTTTGT
** * * *
23076935 TTTAGGCATTGGAATAGATGACTCTTAGAATATAGAGACATAGATGTGACTGACTGGATTGACAG
586 TTTAGGCATCAGAACAGATGACTCCTAGAAGATAGAGACATAGATGTGACTGACTGGATTGACAG
23077000 TACATTGAATTGGACCCAAGTAAAATATACCGTAAATATGTTTTA
651 TACATTGAATTGGACCCAAGTAAAATATACCGTAAATATGTTTTA
23077045 GGCTTCGTGGGATAAATTATGCATGGCGAAGAAGTCTGGCAGAATGGAATTTCATAATCTTCACT
1 GGCTTCGTGGGATAAATTATGCATGGCGAAGAAGTCTGGCAGAATGGAATTTCATAATCTTCACT
* *
23077110 ATTTTAATTTAGATATGCTTTGTAAGCAAGGTTGGAGTTTTATTTCAATCTCGA-TCTCTTCCTA
66 ATTTTAATTTAGATATGCTTTGTAAGCAAGGTTAGAGTTTTATTTCAATCTCCAGTCTCTTCCTA
*
23077174 GTAGAATTTTCAAAGCTAGATATTTTCTGTGTTGTGGCTTTTTTAAAGCCACAAAGGGTAATAAC
131 GTAGAATTTTC-AAGCTAGATATTTTCTGTGTTGTGGCTTTTTTAAAGCCACAAAGGGCAATAAC
* * *
23077239 CCTTCGTTTATATGGAAGAGTATTTTTTTCTGCTAAGCATCTATTCATTATAGTGTTGAATCCGA
195 CCTTCATTTATATGGAAGAGCA-TTTTTTCTGCTAAGCATCTACTCATTATAGTGTTGAATCCGA
23077304 TGCTCTAAGTGTAGTATATTCATTTGTACATTTGTAATTTTTTTGAACAAATTTATTAATAAAAT
259 TGCTCTAAGTGTAGTATATTCATTTGTACATTTGTAATTTTTTTGAACAAATTTATTAATAAAAT
23077369 TATTCATGAATTACACTAATATTATTTGTATAATGTCCTCATGTGATTTTTTCATGTAAAGCAAA
324 TATTCATGAATTACACTAATATTATTTGTATAATGTCCTCATGTGATTTTTTCATGTAAAGCAAA
* *
23077434 ATAGAAAAAAATATTAGCTCATTGGTTGTCTAATATTTAACTAATAGTGAG-AGGTATTATGTGG
389 ATAGAAAAAAATATTAGCTCATTGGTTGTCTAATATTTAACTAATACTGAGCA-GTATTACGTGG
* *
23077498 TTGGATCATAATGCTAAAAGACAGTTTATATTAGTAGATGGGCCTAAACATGTAATTAGTCTAAT
453 TTGGATCATAATGCTAAAAGACAGTTTATATTAGTAGACGGGCCCAAACATGTAATTAGTCTAAT
*
23077563 C-GAAAATGAGAAAACCAATTGAATGACTAATATGTTGTCTATCAAGTCCAATTGGAAAGATGCT
518 CAGAAAAT-AGAAAACCAATTGAATGACTAATATGTTGTCTATCAAGTCCAATTAGAAAGATGCT
** *
23077627 TTGTTTTAGGCATCAGTGCGGATGACTCCTAGAAGATAGAGACATAGATGTGA-TCGACTGGATT
582 TTGTTTTAGGCATCAGAACAGATGACTCCTAGAAGATAGAGACATAGATGTGACT-GACTGGATT
23077691 GACAGT
646 GACAGT
23077697 GTAACAGCCC
Statistics
Matches: 611, Mismatches: 36, Indels: 9
0.93 0.05 0.01
Matches are distributed among these distances:
694 20 0.03
695 194 0.32
696 397 0.65
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (695 bp):
GGCTTCGTGGGATAAATTATGCATGGCGAAGAAGTCTGGCAGAATGGAATTTCATAATCTTCACT
ATTTTAATTTAGATATGCTTTGTAAGCAAGGTTAGAGTTTTATTTCAATCTCCAGTCTCTTCCTA
GTAGAATTTTCAAGCTAGATATTTTCTGTGTTGTGGCTTTTTTAAAGCCACAAAGGGCAATAACC
CTTCATTTATATGGAAGAGCATTTTTTCTGCTAAGCATCTACTCATTATAGTGTTGAATCCGATG
CTCTAAGTGTAGTATATTCATTTGTACATTTGTAATTTTTTTGAACAAATTTATTAATAAAATTA
TTCATGAATTACACTAATATTATTTGTATAATGTCCTCATGTGATTTTTTCATGTAAAGCAAAAT
AGAAAAAAATATTAGCTCATTGGTTGTCTAATATTTAACTAATACTGAGCAGTATTACGTGGTTG
GATCATAATGCTAAAAGACAGTTTATATTAGTAGACGGGCCCAAACATGTAATTAGTCTAATCAG
AAAATAGAAAACCAATTGAATGACTAATATGTTGTCTATCAAGTCCAATTAGAAAGATGCTTTGT
TTTAGGCATCAGAACAGATGACTCCTAGAAGATAGAGACATAGATGTGACTGACTGGATTGACAG
TACATTGAATTGGACCCAAGTAAAATATACCGTAAATATGTTTTA
Found at i:23088105 original size:13 final size:13
Alignment explanation
Indices: 23088087--23088111 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23088077 AAGATTATGC
23088087 TAGTAATAAGTAT
1 TAGTAATAAGTAT
23088100 TAGTAATAAGTA
1 TAGTAATAAGTA
23088112 AAATAGAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (13 bp):
TAGTAATAAGTAT
Found at i:23109900 original size:13 final size:13
Alignment explanation
Indices: 23109882--23109906 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23109872 TTTTAGTAAA
23109882 CTTGTACAATCAT
1 CTTGTACAATCAT
23109895 CTTGTACAATCA
1 CTTGTACAATCA
23109907 ACATTATAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (13 bp):
CTTGTACAATCAT
Found at i:23131323 original size:40 final size:40
Alignment explanation
Indices: 23131275--23131539 Score: 462
Period size: 40 Copynumber: 6.7 Consensus size: 40
23131265 GCAAACACAT
* *
23131275 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
23131315 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
23131355 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
23131395 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23131435 TTGCCTTCGGGTCTTAGCCCGG--ATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23131473 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23131513 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
23131540 ATCCAATGTT
Statistics
Matches: 213, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
38 37 0.17
40 176 0.83
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:23134629 original size:34 final size:34
Alignment explanation
Indices: 23134586--23134654 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
23134576 CCTCGTACTA
*
23134586 TGTATGATTATGCTAAATCTACTTTAACAGGAGC
1 TGTATGATTATGCTAAACCTACTTTAACAGGAGC
*
23134620 TGTATGATTATGCTAAACCTACTTTAACTGGAGC
1 TGTATGATTATGCTAAACCTACTTTAACAGGAGC
23134654 T
1 T
23134655 AAATCAAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.36
Consensus pattern (34 bp):
TGTATGATTATGCTAAACCTACTTTAACAGGAGC
Found at i:23137475 original size:55 final size:55
Alignment explanation
Indices: 23137369--23137497 Score: 143
Period size: 55 Copynumber: 2.3 Consensus size: 55
23137359 CAATCCTGTC
* * * *
23137369 AAAATAACACGGGCGTGCGACACGCCCGTGCCCACTACCCGTGGTCAAAACTATA
1 AAAATGACACGGGCATGTGACACGCCCGTGCCCACCACCCGTGGTCAAAACTATA
* * * ** * *
23137424 AAAATGACATGGGCATGTGACACGCCCGTGCCTACCATCCGTGGTTGAAACTGTC
1 AAAATGACACGGGCATGTGACACGCCCGTGCCCACCACCCGTGGTCAAAACTATA
23137479 AAAA-GAACACGGGCATGTG
1 AAAATG-ACACGGGCATGTG
23137498 CATATATACA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 1 0.02
55 60 0.98
ACGTcount: A:0.30, C:0.28, G:0.25, T:0.17
Consensus pattern (55 bp):
AAAATGACACGGGCATGTGACACGCCCGTGCCCACCACCCGTGGTCAAAACTATA
Found at i:23139167 original size:25 final size:25
Alignment explanation
Indices: 23139139--23139187 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
23139129 ATTTTTGAAG
* * *
23139139 ACTTTTATTTTTTTTTATTTTTTTT
1 ACTTTTATCTTTATTTATATTTTTT
23139164 ACTTTTATCTTTATTTATATTTTT
1 ACTTTTATCTTTATTTATATTTTT
23139188 AAATTACTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (25 bp):
ACTTTTATCTTTATTTATATTTTTT
Found at i:23157470 original size:44 final size:43
Alignment explanation
Indices: 23157377--23157476 Score: 112
Period size: 44 Copynumber: 2.3 Consensus size: 43
23157367 ACCCTGCTAT
*
23157377 AGAACATGACCTTTAGCGGCGCTTCTCCCAAAAACACCTCTAA
1 AGAACATGACCTTTAGCGGCGCTTCTCCCAAAAACACCACTAA
* * * * * *
23157420 AAAACATGATCTTTTGGCGGTGCTT-TCCCTACAAACCCCACTAA
1 AGAACATGA-CCTTTAGCGGCGCTTCTCCC-AAAAACACCACTAA
23157464 AGAACATGACCTT
1 AGAACATGACCTT
23157477 CCCACAAACG
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
43 15 0.33
44 31 0.67
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCGCTTCTCCCAAAAACACCACTAA
Found at i:23157551 original size:43 final size:43
Alignment explanation
Indices: 23157477--23157599 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 43
23157467 ACATGACCTT
* * * *
23157477 CCCACAAACGCCGCTATAGAATATAATCTTTAGCGGCGCTTAC
1 CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTAC
** * * * *
23157520 CTTACAAACACCGCTAAAGAACATGACCTTTAACGGTGCTTTC
1 CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTAC
*
23157563 CCCACAAATGCCGCTAAAGAACATGACCTTTAGCGGC
1 CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGC
23157600 ACTTTTCCCA
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (43 bp):
CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTAC
Found at i:23157624 original size:43 final size:43
Alignment explanation
Indices: 23157534--23157624 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
23157524 CAAACACCGC
** *
23157534 TAAAGAACATGACCTTTAACGGTGCTTTCCCCACAAATGCCGC
1 TAAAGAACATGACCTTTAACGGCACTTTCCCCACAAATGCCGA
* * *
23157577 TAAAGAACATGACCTTTAGCGGCACTTTTCCCA-AAATCGTCGA
1 TAAAGAACATGACCTTTAACGGCACTTTCCCCACAAAT-GCCGA
23157620 TAAAG
1 TAAAG
23157625 GTCATAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 4 0.10
43 37 0.90
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
TAAAGAACATGACCTTTAACGGCACTTTCCCCACAAATGCCGA
Found at i:23163292 original size:23 final size:23
Alignment explanation
Indices: 23163262--23163307 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
23163252 GTAATGTGGC
23163262 TTTGGTTAGAGGGTGTAGTCATA
1 TTTGGTTAGAGGGTGTAGTCATA
23163285 TTTGGTTAGAGGGTGTAGTCATA
1 TTTGGTTAGAGGGTGTAGTCATA
23163308 AGCTGAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.04, G:0.35, T:0.39
Consensus pattern (23 bp):
TTTGGTTAGAGGGTGTAGTCATA
Found at i:23164620 original size:6 final size:6
Alignment explanation
Indices: 23164598--23164681 Score: 89
Period size: 6 Copynumber: 14.0 Consensus size: 6
23164588 AGGTAAAATT
* * * * *
23164598 AATAAA AACATAA AATGAA AATGAA AATGAA AATAAA AATGAA AATAAA
1 AATAAA AATA-AA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* *
23164647 AATAAA AATAAA AATAAA GAT-AA AATAAA ATTAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
23164682 CATCATCATC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
5 4 0.06
6 59 0.88
7 4 0.06
ACGTcount: A:0.75, C:0.01, G:0.06, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:23184505 original size:18 final size:18
Alignment explanation
Indices: 23184484--23184520 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
23184474 ATATATTAAC
23184484 CCAAGTACCCAACCCAAT
1 CCAAGTACCCAACCCAAT
*
23184502 CCAATTACCCAACCCAAT
1 CCAAGTACCCAACCCAAT
23184520 C
1 C
23184521 ATAAAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.46, G:0.03, T:0.14
Consensus pattern (18 bp):
CCAAGTACCCAACCCAAT
Found at i:23184585 original size:20 final size:20
Alignment explanation
Indices: 23184547--23184585 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
23184537 ATTTAATAAA
* **
23184547 TAAAAATAAAATTCTAAAAC
1 TAAAAATAAAAATAAAAAAC
23184567 TAAAAATAAAAATAAAAAA
1 TAAAAATAAAAATAAAAAA
23184586 ACATATAATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:23184673 original size:9 final size:9
Alignment explanation
Indices: 23184605--23184672 Score: 82
Period size: 9 Copynumber: 7.6 Consensus size: 9
23184595 TTTATACAAA
23184605 TAATTCGGT
1 TAATTCGGT
23184614 TAATTCGGT
1 TAATTCGGT
* *
23184623 TAATTTGGA
1 TAATTCGGT
*
23184632 TAATTCGGG
1 TAATTCGGT
23184641 TAATTCGGT
1 TAATTCGGT
**
23184650 TAATTCAAT
1 TAATTCGGT
*
23184659 TAATTTGGT
1 TAATTCGGT
23184668 TAATT
1 TAATT
23184673 TTATAATTAT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:23194212 original size:21 final size:21
Alignment explanation
Indices: 23194188--23194240 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
23194178 CATTGTTTCT
*
23194188 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
23194209 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
23194230 AATCTCACCGC
1 AATCTCACCGC
23194241 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.40, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:23204994 original size:5 final size:5
Alignment explanation
Indices: 23204984--23205012 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
23204974 TAATTTATGA
23204984 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
23205013 AAATAAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:23209605 original size:20 final size:20
Alignment explanation
Indices: 23209582--23209622 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
23209572 AAATAGTAGC
*
23209582 TCATCCATATAAACAGTATT
1 TCATCCAAATAAACAGTATT
23209602 TCATCCAAATAAACAGTATT
1 TCATCCAAATAAACAGTATT
23209622 T
1 T
23209623 ATGCTCGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (20 bp):
TCATCCAAATAAACAGTATT
Found at i:23209786 original size:23 final size:24
Alignment explanation
Indices: 23209757--23209810 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
23209747 GAGCTGATGG
** *
23209757 ACAGTAAACTCTATTGAGCT-GAA
1 ACAGTAAACTCTAACGAGCTAAAA
*
23209780 ACAGTAAGCTCTAACGAGCTAAAA
1 ACAGTAAACTCTAACGAGCTAAAA
23209804 ACAGTAA
1 ACAGTAA
23209811 GCTTTTATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.20
Consensus pattern (24 bp):
ACAGTAAACTCTAACGAGCTAAAA
Done.