Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 76 of 352
Found at i:23796476 original size:43 final size:43
Alignment explanation
Indices: 23796246--23796743 Score: 205
Period size: 43 Copynumber: 11.5 Consensus size: 43
23796236 CGATCTGTTT
*
23796246 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTATTA
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTATTA
* ** * * ** * * * *
23796289 CCTTACTATTTAGGGGGTTAAG-GCTTGTCACCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGATC-TGTAAATTTAG-CCTATTA
* * * * * *
23796333 CCCTACTGCTTAGCGTGATGAGATCTGTAAATTCAGCCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTATTA
* * * ** * ** * * * *
23796376 CCTTACTACTTAGGGGTTTAAGGCCCT-TCACCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAA-GATCTGTAAATTTAG-CCTATTA
23796420 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTATTA
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTATTA
* * ** ** * * *
23796463 CCCTATTGCTTAGGGGTTTAAGGCCAT-T-CGTCTTCGATCTACT-
1 CCCTACTGCTTAGGGGGTTAAGATC-TGTAAAT-TTAG-CCTATTA
* * * * *
23796506 CCACTACTGCTTAGAGAGATCAGATCTGTAAATTTAACCTATTA
1 CC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTATTA
* * ** **** * * * *
23796550 CCCTACTGCTTAGGGGTTTAAGGTCCATCGCCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAG-CCTATTA
* * * * *
23796594 TCGTACTACTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTATTA
* * ** **** * * *
23796637 CCCCACTGCTTAGGGGTTTAAGGCCTGTCGCCTTCGATCTATTT
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAG-CCTATTA
*
23796681 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTATTA
*
23796724 CCCTACTGCTTAAGGGGTTA
1 CCCTACTGCTTAGGGGGTTA
23796744 TGGCTTGTGA
Statistics
Matches: 301, Mismatches: 139, Indels: 30
0.64 0.30 0.06
Matches are distributed among these distances:
42 2 0.01
43 158 0.52
44 139 0.46
45 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTATTA
Found at i:23796923 original size:64 final size:64
Alignment explanation
Indices: 23796822--23796945 Score: 212
Period size: 64 Copynumber: 1.9 Consensus size: 64
23796812 GTATCTATGT
*
23796822 TTATGCCAAATAATTAGGACGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATGC
1 TTATGCCAAATAATTAGGACGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTGATGC
* * *
23796886 TTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 TTATGCCAAATAATTAGGACGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
23796946 TCACGAATGA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (64 bp):
TTATGCCAAATAATTAGGACGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTGATGC
Found at i:23810354 original size:29 final size:29
Alignment explanation
Indices: 23810250--23810354 Score: 75
Period size: 29 Copynumber: 3.5 Consensus size: 29
23810240 ACAAAATTGA
* *
23810250 ATAGTTGGGTGACCATTTTGTAACTTTTC
1 ATAGTTGGGTGACCATTTTATAATTTTTC
** * *** * *
23810279 ATAGTCAGGTGACTAAAAATATTAATTTACTA
1 ATAGTTGGGTGAC-CATTTTA-TAATTT-TTC
* *
23810311 ATAGTTGGATAACCATTTTATAATTTTTC
1 ATAGTTGGGTGACCATTTTATAATTTTTC
23810340 ATAGTTGGGTGACCA
1 ATAGTTGGGTGACCA
23810355 AAAATGAAAA
Statistics
Matches: 51, Mismatches: 22, Indels: 6
0.65 0.28 0.08
Matches are distributed among these distances:
29 25 0.49
30 8 0.16
31 8 0.16
32 10 0.20
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (29 bp):
ATAGTTGGGTGACCATTTTATAATTTTTC
Found at i:23813588 original size:29 final size:29
Alignment explanation
Indices: 23813545--23813602 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
23813535 CATTGATTGA
* *
23813545 ATATAGTTGGGTTATGCCATTGTTTAAAT
1 ATATAGTTGGATTATGCCATTGTTAAAAT
23813574 ATATAGTTGGATTATGCCATTGTTAAAAT
1 ATATAGTTGGATTATGCCATTGTTAAAAT
23813603 GAAATGTGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (29 bp):
ATATAGTTGGATTATGCCATTGTTAAAAT
Found at i:23820030 original size:48 final size:48
Alignment explanation
Indices: 23819959--23820052 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
23819949 TCAAGTATGC
*
23819959 AAATTTTATTCTTTTGTCTTTAAATGTTCGAATTATAGAAATATCAGA
1 AAATTGTATTCTTTTGTCTTTAAATGTTCGAATTATAGAAATATCAGA
*
23820007 AAATTGTATTCTTTTGTCTTTAAATGTTCTAATTATAGAAATATCA
1 AAATTGTATTCTTTTGTCTTTAAATGTTCGAATTATAGAAATATCA
23820053 CTAAGTTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.35, C:0.09, G:0.10, T:0.47
Consensus pattern (48 bp):
AAATTGTATTCTTTTGTCTTTAAATGTTCGAATTATAGAAATATCAGA
Found at i:23823430 original size:26 final size:26
Alignment explanation
Indices: 23823392--23823525 Score: 110
Period size: 26 Copynumber: 5.2 Consensus size: 26
23823382 ATAACTGGCC
* *
23823392 TTGAGCCAGTGTTTATTTAGCATGCT
1 TTGAGCCAATGTTTATTTAGCAGGCT
*
23823418 TTGAGCCAATGTTTACTTAGCAGGCCT
1 TTGAGCCAATGTTTATTTAGCAGG-CT
* * * *
23823445 TT-AGTCGATGTTTATTTAGTAGGTT
1 TTGAGCCAATGTTTATTTAGCAGGCT
** * * *
23823470 TTGAGCCGGTGATTATGTAGTAGGCT
1 TTGAGCCAATGTTTATTTAGCAGGCT
* *
23823496 ATGAGTCAATGTTTATTTA-CTAGGCT
1 TTGAGCCAATGTTTATTTAGC-AGGCT
23823522 TTGA
1 TTGA
23823526 TCCAGTGAAT
Statistics
Matches: 84, Mismatches: 21, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
25 3 0.04
26 77 0.92
27 4 0.05
ACGTcount: A:0.22, C:0.13, G:0.25, T:0.41
Consensus pattern (26 bp):
TTGAGCCAATGTTTATTTAGCAGGCT
Found at i:23830601 original size:22 final size:22
Alignment explanation
Indices: 23830561--23830617 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
23830551 CATAATAGTG
* * *
23830561 AAATGACAACAATACAGTGGGA
1 AAATAACAACAAAACAGTGAGA
*
23830583 AAATAACAACAAAATAGTGAGA
1 AAATAACAACAAAACAGTGAGA
**
23830605 AAGCAACAACAAA
1 AAATAACAACAAA
23830618 GAGAGGGAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.60, C:0.14, G:0.16, T:0.11
Consensus pattern (22 bp):
AAATAACAACAAAACAGTGAGA
Found at i:23832470 original size:42 final size:42
Alignment explanation
Indices: 23832418--23832523 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 42
23832408 CGTATGAGTT
* * *
23832418 TCAGTTTAACCCA-ATTGGGTTTCCGTTTAGCTCTTTCGAGCA
1 TCAGTCTAACCCATA-TGGGTTTCCGTTCAGCTCTTACGAGCA
* *
23832460 TCAGTCTAACCCTTATGGGTTTCCGTTCAGCTCTTACGAGCT
1 TCAGTCTAACCCATATGGGTTTCCGTTCAGCTCTTACGAGCA
*
23832502 TCTGT-TCAACCC-TATGGGTTTC
1 TCAGTCT-AACCCATATGGGTTTC
23832524 TGTTAGCACT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 11 0.20
42 44 0.79
43 1 0.02
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.38
Consensus pattern (42 bp):
TCAGTCTAACCCATATGGGTTTCCGTTCAGCTCTTACGAGCA
Found at i:23836621 original size:30 final size:30
Alignment explanation
Indices: 23836585--23836651 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
23836575 ATTGTACAGG
*
23836585 TCACACGCCAGTGTGAACAGGTCGTGTGCC
1 TCACACGCCAGTGTGAACAGGCCGTGTGCC
**
23836615 TCACACGCCTTTGTGAACAGGCCGTGTGCC
1 TCACACGCCAGTGTGAACAGGCCGTGTGCC
23836645 TCACACG
1 TCACACG
23836652 GCTTTAGACG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.19, C:0.33, G:0.27, T:0.21
Consensus pattern (30 bp):
TCACACGCCAGTGTGAACAGGCCGTGTGCC
Found at i:23839871 original size:17 final size:17
Alignment explanation
Indices: 23839849--23839881 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
23839839 TGCAGATGCA
23839849 CTTAGTTAAAAATCGTT
1 CTTAGTTAAAAATCGTT
23839866 CTTAGTTAAAAATCGT
1 CTTAGTTAAAAATCGT
23839882 CACTATTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (17 bp):
CTTAGTTAAAAATCGTT
Found at i:23842348 original size:24 final size:24
Alignment explanation
Indices: 23842316--23842363 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
23842306 TTGTGTAGTA
23842316 GTTTAAAATGATGGAATAAAGTGT
1 GTTTAAAATGATGGAATAAAGTGT
23842340 GTTTAAAATGATGGAATAAAGTGT
1 GTTTAAAATGATGGAATAAAGTGT
23842364 TAATTGAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (24 bp):
GTTTAAAATGATGGAATAAAGTGT
Found at i:23848282 original size:16 final size:16
Alignment explanation
Indices: 23848253--23848322 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
23848243 TTTGGTTCGC
*
23848253 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
* *
23848269 CGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
23848285 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
*
23848301 TATAATGGATTAGAGG
1 TGTAATGGATTAGAGG
23848317 TGTAAT
1 TGTAAT
23848323 AGCAAATCAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.33, C:0.01, G:0.34, T:0.31
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:23848367 original size:45 final size:44
Alignment explanation
Indices: 23848303--23848395 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
23848293 ATTAGAGGTA
* **
23848303 TAATGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAATG
1 TAATGGAATAGAGACGTAATAG-AAATCAACTGTTTGGTTGAATG
* ***
23848348 TAATGGAATAGAGACGTAATAGTAATCCTGTGTTTGGTTGAATG
1 TAATGGAATAGAGACGTAATAGAAATCAACTGTTTGGTTGAATG
23848392 TAAT
1 TAAT
23848396 AGAGGTGTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 22 0.54
45 19 0.46
ACGTcount: A:0.33, C:0.06, G:0.26, T:0.34
Consensus pattern (44 bp):
TAATGGAATAGAGACGTAATAGAAATCAACTGTTTGGTTGAATG
Found at i:23848575 original size:17 final size:17
Alignment explanation
Indices: 23848553--23848587 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
23848543 AATAATTATT
23848553 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
23848570 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
23848587 A
1 A
23848588 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:23848683 original size:120 final size:120
Alignment explanation
Indices: 23848541--23848786 Score: 440
Period size: 120 Copynumber: 2.0 Consensus size: 120
23848531 ATATTTTAAC
*
23848541 ATAATAATTATTAAATATAATTTAATA-AAAAATATAATTTAATAAAATTCTTAATATTAAAATA
1 ATAATTATTATTAAATATAATTTAATATAAAAATATAATTTAATAAAATTCTTAATATT-AAATA
*
23848605 TTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAA
65 TTCTTATACGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAA
* *
23848661 ATAATTATTATTAAATATAATTTAATATAAATATATAATTTAATAAAATTCTTAGTATTAAATAT
1 ATAATTATTATTAAATATAATTTAATATAAAAATATAATTTAATAAAATTCTTAATATTAAATAT
23848726 TCTTATACGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAA
66 TCTTATACGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAA
23848781 ATAATT
1 ATAATT
23848787 GATTTTGTGG
Statistics
Matches: 121, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
120 92 0.76
121 29 0.24
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.41
Consensus pattern (120 bp):
ATAATTATTATTAAATATAATTTAATATAAAAATATAATTTAATAAAATTCTTAATATTAAATAT
TCTTATACGAATTTACTAAAATCATAATATATAATACTATAAAATATAATCTAAA
Found at i:23848698 original size:18 final size:17
Alignment explanation
Indices: 23848675--23848709 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
23848665 TTATTATTAA
23848675 ATATAATTTAATATAAAT
1 ATATAATTTAATA-AAAT
23848693 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23848710 TCTTAGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23848768 original size:61 final size:60
Alignment explanation
Indices: 23848582--23848770 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 60
23848572 ATATAATTTA
23848582 ATAAAATTCTTAATATTAAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACT
1 ATAAAATTCTTAATATT-AAATATTCTTATA-GAATTTACTAAAATCATAATATATAATACT
* * * * * * ** *
23848644 ATAAAA-T-ATAATCTAAAATAATTATTATTA-AATATAATTTAAT-ATAAATATATAAT-TT
1 ATAAAATTCTTAATATTAAAT-ATTCTTA-TAGAATTTACTAAAATCAT-AATATATAATACT
*
23848702 AATAAAATTCTTAGTATTAAATATTCTTATACGAATTTACTAAAATCATAATATATAATACT
1 -ATAAAATTCTTAATATTAAATATTCTTATA-GAATTTACTAAAATCATAATATATAATACT
23848764 ATAAAAT
1 ATAAAAT
23848771 ATAATCTAAA
Statistics
Matches: 98, Mismatches: 19, Indels: 21
0.71 0.14 0.15
Matches are distributed among these distances:
58 3 0.03
59 31 0.32
60 18 0.18
61 37 0.38
62 9 0.09
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (60 bp):
ATAAAATTCTTAATATTAAATATTCTTATAGAATTTACTAAAATCATAATATATAATACT
Found at i:23850284 original size:13 final size:13
Alignment explanation
Indices: 23850268--23850297 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23850258 TAGACCAAGC
23850268 TTTTCAAAAGCAT
1 TTTTCAAAAGCAT
*
23850281 TTTTCATAAGCAT
1 TTTTCAAAAGCAT
23850294 TTTT
1 TTTT
23850298 TTGCAGCACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (13 bp):
TTTTCAAAAGCAT
Found at i:23852548 original size:14 final size:13
Alignment explanation
Indices: 23852511--23852551 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
23852501 CTTTTGTTAG
23852511 TTTGAAATT-TTT
1 TTTGAAATTATTT
23852523 TATTGAAATTATTT
1 T-TTGAAATTATTT
23852537 TTTGAAACTTATTT
1 TTTGAAA-TTATTT
23852551 T
1 T
23852552 CAATGAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 1 0.04
13 14 0.54
14 11 0.42
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.61
Consensus pattern (13 bp):
TTTGAAATTATTT
Found at i:23853365 original size:23 final size:23
Alignment explanation
Indices: 23853339--23853385 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
23853329 AAACAAATGC
*
23853339 TCATA-TTTATATTATTAAAATAT
1 TCATATTTTATACTA-TAAAATAT
23853362 TCATATTTTATACTATAAAATAT
1 TCATATTTTATACTATAAAATAT
23853385 T
1 T
23853386 TTTACTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (23 bp):
TCATATTTTATACTATAAAATAT
Found at i:23855299 original size:5 final size:5
Alignment explanation
Indices: 23855289--23855323 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
23855279 ATGTTACAAC
*
23855289 AAAAG AAAAG AAAAAG AAGAG AAAAG AAAAG AAAA
1 AAAAG AAAAG -AAAAG AAAAG AAAAG AAAAG AAAA
23855324 ATGAAACCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:23855303 original size:11 final size:11
Alignment explanation
Indices: 23855289--23855329 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
23855279 ATGTTACAAC
23855289 AAAAGAAAAGA
1 AAAAGAAAAGA
*
23855300 AAAAGAAGAG-
1 AAAAGAAAAGA
23855310 AAAAGAAAAGA
1 AAAAGAAAAGA
23855321 AAAATGAAA
1 AAAA-GAAA
23855330 CCCTAAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
10 9 0.35
11 13 0.50
12 4 0.15
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (11 bp):
AAAAGAAAAGA
Found at i:23858165 original size:14 final size:14
Alignment explanation
Indices: 23858115--23858166 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
23858105 TATTTTAAGC
*
23858115 ATTTTATTTTTAATT
1 ATTTT-TTTTGAATT
*
23858130 ATTTTTTTAATGAATA
1 ATTTTTTT--TGAATT
*
23858146 AATTTTTTTGAATT
1 ATTTTTTTTGAATT
23858160 ATTTTTT
1 ATTTTTT
23858167 ATTTTAATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
14 14 0.47
15 5 0.17
16 11 0.37
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (14 bp):
ATTTTTTTTGAATT
Found at i:23859555 original size:13 final size:16
Alignment explanation
Indices: 23859532--23859579 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
23859522 TTGTATTGTT
*
23859532 ATCATCTGGTAAGTTC
1 ATCACCTGGTAAGTTC
23859548 AT-A-C-GGTATAGTT-
1 ATCACCTGGTA-AGTTC
23859561 ATCACCTGGTAAGTTC
1 ATCACCTGGTAAGTTC
23859577 ATC
1 ATC
23859580 GGACTATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
13 6 0.22
14 6 0.22
15 6 0.22
16 9 0.33
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (16 bp):
ATCACCTGGTAAGTTC
Found at i:23867560 original size:131 final size:130
Alignment explanation
Indices: 23867314--23867645 Score: 419
Period size: 131 Copynumber: 2.6 Consensus size: 130
23867304 AAAAAACCGA
* * * * * *
23867314 AACCCAGCAC-AGTAGGGTACGATTCCTCGAATT-TCTAGACATTGAACATTGCCTT-GTTTT--
1 AACCCAGCACGA-TAGGGCACGATTCCCCGAATTGAC-AAACATCGAACATTACCTTCGTTTTAA
** * * *
23867374 AGAATTTAGAAAACATGAGTGAAATTCTAAAGGGATATTCGATTATTTGGAACAAATGGGAAATT
64 AGAATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTATTTGGAACAAACGGGAAATT
23867439 GC
129 GC
*
23867441 AA-CCATGCACGATAGGGCACGATTCCCCGAATTGACAAACATCGAACATTTCCTTCGTTTTAAA
1 AACCCA-GCACGATAGGGCACGATTCCCCGAATTGACAAACATCGAACATTACCTTCGTTTTAAA
23867505 GAATTTTTAAAGACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGG-ACAAACGGGAAAT
65 GAATTTTTAAA-ACATGAGTGAAATTCCAAAGGAATATTCGATTA-TTTGGAACAAACGGGAAAT
*
23867569 TGT
128 TGC
* * *
23867572 AACCCAGCACGATAGGGCACGATTCCCCGAATTGCCGAACATCAAACATTACCTTCGTTTTAAAG
1 AACCCAGCACGATAGGGCACGATTCCCCGAATTGACAAACATCGAACATTACCTTCGTTTTAAAG
23867637 -ATTTTTAAA
66 AATTTTTAAA
23867646 TGAATAATCA
Statistics
Matches: 180, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
126 3 0.02
127 41 0.23
128 7 0.04
130 19 0.11
131 102 0.57
132 8 0.04
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (130 bp):
AACCCAGCACGATAGGGCACGATTCCCCGAATTGACAAACATCGAACATTACCTTCGTTTTAAAG
AATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTATTTGGAACAAACGGGAAATTGC
Found at i:23868215 original size:18 final size:18
Alignment explanation
Indices: 23868192--23868245 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
23868182 CCACCACCAA
23868192 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
23868210 CTCCACT----AC-C-TA
1 CTCCACTAGCCACACTTG
23868222 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
23868240 CTCCAC
1 CTCCAC
23868246 CACCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 8 0.29
13 1 0.04
14 2 0.07
16 2 0.07
17 1 0.04
18 14 0.50
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:23868225 original size:30 final size:30
Alignment explanation
Indices: 23868182--23868250 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
23868172 CTAGCATTTG
23868182 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
23868212 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
23868242 CCACCACCA
1 CCACCACCA
23868251 CTTGTACCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:23868820 original size:25 final size:26
Alignment explanation
Indices: 23868792--23868862 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
23868782 ATTCCAAATT
*
23868792 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATATATTAATA
* *
23868817 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATTAATA
*
23868842 CTATATTATTTATATATATAT
1 CTATATTATGTATATATATAT
23868863 ATATTTTTAC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 2 0.05
25 35 0.92
26 1 0.03
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.54
Consensus pattern (26 bp):
CTATATTATGTATATATATATTAATA
Found at i:23868906 original size:22 final size:22
Alignment explanation
Indices: 23868876--23868983 Score: 71
Period size: 22 Copynumber: 4.9 Consensus size: 22
23868866 TTTTTACATG
*
23868876 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
23868898 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
23868923 CTATATTATGTACATATTTTTAA
1 TTATATTATGTATATA-TTTTAA
* * *
23868946 -TATTATCACGTATTTATTTT--
1 TTA-TATTATGTATATATTTTAA
*
23868966 TTATA-TATGTACATATTT
1 TTATATTATGTATATATTT
23868984 ATGTAGTATT
Statistics
Matches: 67, Mismatches: 13, Indels: 15
0.71 0.14 0.16
Matches are distributed among these distances:
19 9 0.13
20 2 0.03
21 2 0.03
22 17 0.25
23 12 0.18
24 13 0.19
25 12 0.18
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:23868932 original size:25 final size:24
Alignment explanation
Indices: 23868882--23868968 Score: 70
Period size: 24 Copynumber: 3.5 Consensus size: 24
23868872 CATGTTATCT
*
23868882 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
23868908 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
** * *
23868933 TACATA-TTTTTAA-TATTATCACG
1 TATGTATTTTTTAACTA-TATTATG
*
23868956 TATTTATTTTTTA
1 TATGTATTTTTTA
23868969 TATATGTACA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
22 2 0.04
23 10 0.20
24 17 0.33
25 15 0.29
26 7 0.14
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:23868950 original size:20 final size:20
Alignment explanation
Indices: 23868925--23868983 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
23868915 TTTTTACACT
23868925 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
23868945 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
23868968 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
23868984 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:23871776 original size:16 final size:16
Alignment explanation
Indices: 23871755--23871794 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
23871745 TAATATTTGA
23871755 TTTTTGTGT-TTATTCT
1 TTTTTGT-TATTATTCT
*
23871771 TTTTTGTTATTATTTT
1 TTTTTGTTATTATTCT
23871787 TTTTTGTT
1 TTTTTGTT
23871795 TTGTGTTTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 1 0.05
16 21 0.95
ACGTcount: A:0.07, C:0.03, G:0.10, T:0.80
Consensus pattern (16 bp):
TTTTTGTTATTATTCT
Found at i:23879094 original size:19 final size:19
Alignment explanation
Indices: 23879070--23879114 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
23879060 ACATCATTTT
23879070 CAGAAGCCCGAAGGCTGAA
1 CAGAAGCCCGAAGGCTGAA
23879089 CAGAAGCCCGAAGGCTGAA
1 CAGAAGCCCGAAGGCTGAA
23879108 CAGAAGC
1 CAGAAGC
23879115 TCATGAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.38, C:0.27, G:0.31, T:0.04
Consensus pattern (19 bp):
CAGAAGCCCGAAGGCTGAA
Found at i:23879151 original size:21 final size:21
Alignment explanation
Indices: 23879127--23879224 Score: 88
Period size: 21 Copynumber: 4.7 Consensus size: 21
23879117 ATGAAAACTA
*
23879127 AACAGAAACCCATAAGGGTTG
1 AACAGAAACTCATAAGGGTTG
* * *
23879148 AACAGAAGCTCATAAGAGCTG
1 AACAGAAACTCATAAGGGTTG
** *
23879169 AGTAGAAACTCATAAGGGTTA
1 AACAGAAACTCATAAGGGTTG
* * * *
23879190 AACAGAAGCTCAAAAGAGCTG
1 AACAGAAACTCATAAGGGTTG
*
23879211 AACGGAAACTCATA
1 AACAGAAACTCATA
23879225 TGAGTTAAGA
Statistics
Matches: 57, Mismatches: 20, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.15
Consensus pattern (21 bp):
AACAGAAACTCATAAGGGTTG
Found at i:23879232 original size:42 final size:42
Alignment explanation
Indices: 23879106--23879243 Score: 136
Period size: 42 Copynumber: 3.3 Consensus size: 42
23879096 CCGAAGGCTG
* * * *
23879106 AACAGAAGCTCATGAAA-A-CTAAACAGAAACCCATAAGGGTTG
1 AACAGAAGCTCA--AAAGAGCTGAACAGAAACTCATAAGAGTTA
* ** *
23879148 AACAGAAGCTCATAAGAGCTGAGTAGAAACTCATAAGGGTTA
1 AACAGAAGCTCAAAAGAGCTGAACAGAAACTCATAAGAGTTA
* *
23879190 AACAGAAGCTCAAAAGAGCTGAACGGAAACTCATATGAGTTA
1 AACAGAAGCTCAAAAGAGCTGAACAGAAACTCATAAGAGTTA
*
23879232 AGAAAGAAGCTC
1 A-ACAGAAGCTC
23879244 GTGTGAGCTA
Statistics
Matches: 80, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
40 2 0.03
41 1 0.01
42 68 0.85
43 9 0.11
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.16
Consensus pattern (42 bp):
AACAGAAGCTCAAAAGAGCTGAACAGAAACTCATAAGAGTTA
Found at i:23887423 original size:5 final size:5
Alignment explanation
Indices: 23887413--23887440 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
23887403 TAATGAAGGA
23887413 ATAAT ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATA
23887441 TTATGTGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:23889698 original size:21 final size:22
Alignment explanation
Indices: 23889674--23889731 Score: 52
Period size: 21 Copynumber: 2.7 Consensus size: 22
23889664 AGAAGAAGGT
23889674 GACAAAAAAGAAGAGA-A-AAGA
1 GACAAAAAAGAAGAGATAGAA-A
*
23889695 GACAGAAATA-AAGA-ATAGAAA
1 GACA-AAAAAGAAGAGATAGAAA
*
23889716 GACAAAAGAGAAGAGA
1 GACAAAAAAGAAGAGA
23889732 GATATGAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
20 5 0.17
21 18 0.60
22 7 0.23
ACGTcount: A:0.67, C:0.05, G:0.24, T:0.03
Consensus pattern (22 bp):
GACAAAAAAGAAGAGATAGAAA
Found at i:23891790 original size:16 final size:15
Alignment explanation
Indices: 23891766--23891807 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
23891756 AAAAAAAATT
23891766 ATATATTTAATAATA
1 ATATATTTAATAATA
*
23891781 ATATTATTT-A-AATT
1 ATA-TATTTAATAATA
23891795 ATATATTTAATAA
1 ATATATTTAATAA
23891808 AATTTATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
13 5 0.22
14 7 0.30
15 6 0.26
16 5 0.22
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATATTTAATAATA
Found at i:23891793 original size:29 final size:27
Alignment explanation
Indices: 23891761--23891814 Score: 90
Period size: 29 Copynumber: 1.9 Consensus size: 27
23891751 ACTTGAAAAA
23891761 AAATTATATATTTAATAATAATATTATTT
1 AAATTATATATTTAATAA-AAT-TTATTT
23891790 AAATTATATATTTAATAAAATTTAT
1 AAATTATATATTTAATAAAATTTAT
23891815 AAATGTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 4 0.16
28 3 0.12
29 18 0.72
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
AAATTATATATTTAATAAAATTTATTT
Found at i:23891801 original size:13 final size:13
Alignment explanation
Indices: 23891761--23891804 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
23891751 ACTTGAAAAA
23891761 AAATTATATATTT
1 AAATTATATATTT
*
23891774 AATAATAATATTATTT
1 -A-AATTATA-TATTT
23891790 AAATTATATATTT
1 AAATTATATATTT
23891803 AA
1 AA
23891805 TAAAATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 7 0.27
14 7 0.27
15 7 0.27
16 5 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AAATTATATATTT
Found at i:23891808 original size:16 final size:16
Alignment explanation
Indices: 23891761--23891808 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
23891751 ACTTGAAAAA
23891761 AAATTATATATTTAAT
1 AAATTATATATTTAAT
*
23891777 -AA-TA-ATA-TTATTT
1 AAATTATATATTTA-AT
23891790 AAATTATATATTTAAT
1 AAATTATATATTTAAT
23891806 AAA
1 AAA
23891809 ATTTATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
12 3 0.12
13 4 0.16
14 4 0.16
15 4 0.16
16 7 0.28
17 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AAATTATATATTTAAT
Found at i:23892666 original size:14 final size:15
Alignment explanation
Indices: 23892649--23892678 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
23892639 TTGATTAAAT
23892649 TAATAAAG-TTAAGA
1 TAATAAAGATTAAGA
23892663 TAATAAAGATTAAGA
1 TAATAAAGATTAAGA
23892678 T
1 T
23892679 GTTTTGATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.57, C:0.00, G:0.13, T:0.30
Consensus pattern (15 bp):
TAATAAAGATTAAGA
Found at i:23897590 original size:20 final size:22
Alignment explanation
Indices: 23897550--23897590 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
23897540 ATAGCAGTTG
23897550 ACAACGAAACAATCGATTGAAA
1 ACAACGAAACAATCGATTGAAA
23897572 ACAA-GAAACAATC-ATTGAA
1 ACAACGAAACAATCGATTGAA
23897591 CAGAGGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 9 0.47
22 4 0.21
ACGTcount: A:0.56, C:0.17, G:0.12, T:0.15
Consensus pattern (22 bp):
ACAACGAAACAATCGATTGAAA
Found at i:23900923 original size:22 final size:22
Alignment explanation
Indices: 23900898--23900943 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
23900888 AGTTTATAGT
*
23900898 AAAATCATCATTTTACATCATC
1 AAAATCATCATTTCACATCATC
23900920 AAAATCATCATTTCACATCATC
1 AAAATCATCATTTCACATCATC
23900942 AA
1 AA
23900944 TCATGCAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATCATCATTTCACATCATC
Found at i:23902380 original size:17 final size:18
Alignment explanation
Indices: 23902307--23902381 Score: 61
Period size: 17 Copynumber: 4.3 Consensus size: 18
23902297 GTTATCGATT
23902307 TTGAAATGGTAAATGT-TA
1 TTGAAATGG-AAATGTGTA
* *
23902325 TTGAATTGGAAATG-CTA
1 TTGAAATGGAAATGTGTA
* *
23902342 TTGAAATAGCAA-GTG-A
1 TTGAAATGGAAATGTGTA
23902358 TATGAAAT-GAAATGTGTA
1 T-TGAAATGGAAATGTGTA
23902376 TTGAAA
1 TTGAAA
23902382 CCAAAATGGA
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
16 6 0.13
17 30 0.65
18 10 0.22
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (18 bp):
TTGAAATGGAAATGTGTA
Found at i:23905676 original size:17 final size:18
Alignment explanation
Indices: 23905654--23905688 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
23905644 GATATGATAC
*
23905654 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
23905671 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
23905689 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:23905977 original size:22 final size:21
Alignment explanation
Indices: 23905942--23906015 Score: 64
Period size: 22 Copynumber: 3.6 Consensus size: 21
23905932 AAAAGGTATC
* *
23905942 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
23905963 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
23905986 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
23906005 TGC-AATCATAT
1 TACAAATCATAT
23906016 TGTGAGAGCC
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:23906014 original size:18 final size:19
Alignment explanation
Indices: 23905978--23906015 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
23905968 AATCATATCT
23905978 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
23905997 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
23906015 T
1 T
23906016 TGTGAGAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:23908283 original size:39 final size:39
Alignment explanation
Indices: 23908229--23908354 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
23908219 TTTAGTGATG
*
23908229 TATATCCGGACTTAGGGTCCGCAGGCTATGTGTTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
23908268 TATATCTGGACTTAGGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
23908307 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
23908346 TATGTCCGG
1 TATATCCGG
23908355 GCTAAAGTCT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:23908369 original size:39 final size:39
Alignment explanation
Indices: 23908229--23908381 Score: 119
Period size: 39 Copynumber: 3.9 Consensus size: 39
23908219 TTTAGTGATG
* ** * * *
23908229 TATATCCGGACTTAGGGTCCGCAGGCTATGTGTTGGAAT
1 TATAACCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
* * ** * * *
23908268 TATATCTGGACTTAGGGTCCACAGGCTATGTGCTGGAAT
1 TATAACCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
*
23908307 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATAACCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
** * * *
23908346 TATGTCCGGGC-TAAAGTCTCGCAGGCTTCGAGCTGG
1 TATAACCGGACTTAAAGTC-CGCAGGCTACGTGCTGG
23908382 TATTATACCG
Statistics
Matches: 98, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
38 6 0.06
39 92 0.94
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (39 bp):
TATAACCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
Found at i:23908371 original size:78 final size:78
Alignment explanation
Indices: 23908229--23908372 Score: 173
Period size: 78 Copynumber: 1.8 Consensus size: 78
23908219 TTTAGTGATG
* * * * * * **
23908229 TATATCCGGACTTAGGGTCCGCAGGCTATGTGTTGGAATTATATCTGGACTTAGGGTCCACAGGC
1 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGC
23908294 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* * *
23908307 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCTCGCAGG
1 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTC-CACAGG
23908371 CT
65 CT
23908373 TCGAGCTGGT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
77 5 0.09
78 49 0.91
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (78 bp):
TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGC
TATGTGCTGGAAT
Found at i:23908381 original size:78 final size:78
Alignment explanation
Indices: 23908229--23908392 Score: 172
Period size: 78 Copynumber: 2.1 Consensus size: 78
23908219 TTTAGTGATG
* * * * * * **
23908229 TATATCCGGACTTAGGGTCCGCAGGCTATGTGTTGGAATTATATCTGGACTTAGGGTCCACAGGC
1 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGC
*
23908294 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* * *
23908307 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCTCGCAGG
1 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTC-CACAGG
*
23908371 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
23908385 TAT-ACCGG
1 TATAACCGG
23908393 GTTTAAATTT
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
77 11 0.15
78 60 0.85
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (78 bp):
TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCACAGGC
TATGAGCTGGAAT
Found at i:23910867 original size:45 final size:45
Alignment explanation
Indices: 23910811--23911078 Score: 256
Period size: 45 Copynumber: 5.9 Consensus size: 45
23910801 CGCTATCTAC
* *
23910811 TATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* **
23910856 TATCTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTAC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* **
23910901 T-TCTTCAATCTGCTCCCCGTCTAATACAGAGTTGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * *
23910945 TATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* ** * * * * * *
23910990 CATCTGGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAGATCTGCT
1 TATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTG-T
* * *
23911036 ATGTCTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 -TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATC
23911079 ATCTTGGATC
Statistics
Matches: 178, Mismatches: 36, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
43 6 0.03
44 43 0.24
45 100 0.56
46 1 0.01
47 17 0.10
48 5 0.03
49 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
Found at i:23910926 original size:89 final size:90
Alignment explanation
Indices: 23910805--23910987 Score: 278
Period size: 89 Copynumber: 2.0 Consensus size: 90
23910795 GAAAGGCGCT
** * *
23910805 ATCTACTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTACTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
*
23910870 TCCCTGTCTAATACAGAGACGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
** *
23910895 ATCTACT-TCTTCAATCTGCTCCCCGTCTAATACAGAGTTGCCAAATCTGTTATCTCCGATTTGC
1 ATCTACTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
*
23910959 TCCCCGTCTAATACAGAGATGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
23910984 ATCT
1 ATCT
23910988 GTCATCTGGG
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
89 77 0.92
90 7 0.08
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.32
Consensus pattern (90 bp):
ATCTACTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
TCCCCGTCTAATACAGAGACGCCAA
Found at i:23911234 original size:78 final size:78
Alignment explanation
Indices: 23911018--23911208 Score: 330
Period size: 78 Copynumber: 2.4 Consensus size: 78
23911008 ATGTAAACAC
*
23911018 ATGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
23911083 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
23911096 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
23911160 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
23911174 ATGAAGGTCAGATCTGCTATGTTTTCAATCTGCTC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTC
23911209 TTCGCCAAAT
Statistics
Matches: 106, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
77 2 0.02
78 102 0.96
79 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:23911565 original size:220 final size:220
Alignment explanation
Indices: 23911176--23911768 Score: 857
Period size: 220 Copynumber: 2.7 Consensus size: 220
23911166 CTGCTTCAAT
* * * * * * *
23911176 GAAGGTCAGATCTGCTATGTTTTCAATCTGCTCTTCGCCAAATATGGAAATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * ** ** *
23911241 TTCGATTTGTTCTCTGACAGTACAAAGATGCCAAATCATCTTATATCTGCTTCAGCGTAAACACG
66 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCTGCTTCAGCGTAAACACC
* * *
23911306 TGAAAGCCAAATCTGCTATG-TCTTCGATCTGTTCCTTGTAAATGCAAGGATGCCAAATCATCTT
131 TGAAAGTCAAATCTGCTATGCT-TTCGATCTGCTCCTTGTAAATACAAGGATGCCAAATCATCTT
23911370 GGATCTACTTCGATGTGAAAACATCC
195 GGATCTACTTCGATGTGAAAACATCC
* *
23911396 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATACCAAATATGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * * *
23911461 TTTGATTTCTTCTCTGACAATACAGAGATGTTAAATTATCTTGGATCTGCTTCAGCGTAGACACC
66 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCTGCTTCAGCGTAAACACC
* *
23911526 TGAATGTCAAATCTGCTATGCTTTCGATCTGCTCCTTGTAAATACAAGGATGCCAGATCATCTTG
131 TGAAAGTCAAATCTGCTATGCTTTCGATCTGCTCCTTGTAAATACAAGGATGCCAAATCATCTTG
*
23911591 GATCTATTTCGATGTGAAAACATCC
196 GATCTACTTCGATGTGAAAACATCC
* * * *
23911616 GATGGTTAGATCTACTATGTCTTCGATCTGCTCTCCGTTGAA-ATGGAGATGCCAAATCTATTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * *
23911680 TTCGATTTGTTCTCTGACAATATAGAGATGTTAAATCATATTGGATCTGCTTCAGCGTAAACATC
66 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCTGCTTCAGCGTAAACACC
*
23911745 TGAAGGTCAAATCTGCTATGCTTT
131 TGAAAGTCAAATCTGCTATGCTTT
23911769 AGCCTGTTAC
Statistics
Matches: 332, Mismatches: 40, Indels: 3
0.89 0.11 0.01
Matches are distributed among these distances:
219 100 0.30
220 231 0.70
221 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (220 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCTGCTTCAGCGTAAACACC
TGAAAGTCAAATCTGCTATGCTTTCGATCTGCTCCTTGTAAATACAAGGATGCCAAATCATCTTG
GATCTACTTCGATGTGAAAACATCC
Found at i:23921052 original size:22 final size:21
Alignment explanation
Indices: 23921017--23921089 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 21
23921007 TAAAGGTATC
* *
23921017 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
23921038 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
23921061 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
23921080 TGC-AATCATA
1 TACAAATCATA
23921090 ACTAAGATTG
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.34
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:23921060 original size:23 final size:22
Alignment explanation
Indices: 23921017--23921074 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
23921007 TAAAGGTATC
* *
23921017 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
23921038 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
23921061 TGCATATCATATCT
1 TACAAATCATATCT
23921075 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:23921077 original size:19 final size:19
Alignment explanation
Indices: 23921053--23921124 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
23921043 AATCATATCT
23921053 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
23921072 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
23921090 ACTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
23921107 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
23921125 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
17 15 0.31
18 15 0.31
19 18 0.38
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:23921108 original size:35 final size:37
Alignment explanation
Indices: 23921054--23921124 Score: 119
Period size: 35 Copynumber: 1.9 Consensus size: 37
23921044 ATCATATCTT
23921054 CTAAGATTGCATATCATATCTAAGATTGCA-ATCATAA
1 CTAAGATTG-ATATCATATCTAAGATTGCATATCATAA
23921091 CTAAGATTG-TATCATATCTAAGATTGCATATCAT
1 CTAAGATTGATATCATATCTAAGATTGCATATCAT
23921125 TGAAGATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
35 19 0.58
36 5 0.15
37 9 0.27
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.35
Consensus pattern (37 bp):
CTAAGATTGATATCATATCTAAGATTGCATATCATAA
Found at i:23930935 original size:26 final size:26
Alignment explanation
Indices: 23930893--23930979 Score: 102
Period size: 26 Copynumber: 3.3 Consensus size: 26
23930883 ATTACTGGCG
*
23930893 AACCCTATGGTAGACACACTCTAGCA
1 AACCCTATGGTAAACACACTCTAGCA
* **
23930919 AACCCTATGGCAAACACACTCTAGTG
1 AACCCTATGGTAAACACACTCTAGCA
* * * *
23930945 AACCCTATAGTGAACTCACTCTAACA
1 AACCCTATGGTAAACACACTCTAGCA
23930971 AACCCTATG
1 AACCCTATG
23930980 CCTGGCGAAC
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.36, C:0.31, G:0.13, T:0.21
Consensus pattern (26 bp):
AACCCTATGGTAAACACACTCTAGCA
Found at i:23931037 original size:17 final size:17
Alignment explanation
Indices: 23931010--23931049 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
23931000 TGTTGTGTGT
*
23931010 AAGCCCTTACTTAGTGC
1 AAGCCCCTACTTAGTGC
* *
23931027 ATGCCCCTACTTTGTGC
1 AAGCCCCTACTTAGTGC
23931044 AAGCCC
1 AAGCCC
23931050 TATATTATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.20, C:0.35, G:0.17, T:0.28
Consensus pattern (17 bp):
AAGCCCCTACTTAGTGC
Found at i:23941179 original size:17 final size:18
Alignment explanation
Indices: 23941145--23941180 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
23941135 ATATAAATTT
*
23941145 TAAAAATATAATATATAA
1 TAAAAATATAATAGATAA
23941163 TAAAAATAT-ATAGATAA
1 TAAAAATATAATAGATAA
23941180 T
1 T
23941181 TTAATATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (18 bp):
TAAAAATATAATAGATAA
Found at i:23946667 original size:5 final size:6
Alignment explanation
Indices: 23946651--23946675 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23946641 ATTTAATAGC
23946651 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
23946676 AACCTGTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:23947203 original size:5 final size:5
Alignment explanation
Indices: 23947195--23947223 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
23947185 GTAAGTCTTG
23947195 TCTCT TCTCT TCTCT TCTCT TCTCT TCTC
1 TCTCT TCTCT TCTCT TCTCT TCTCT TCTC
23947224 ATATTAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (5 bp):
TCTCT
Found at i:23947800 original size:7 final size:7
Alignment explanation
Indices: 23947788--23947834 Score: 94
Period size: 7 Copynumber: 6.7 Consensus size: 7
23947778 GTTTAAAAAT
23947788 TTTATTA
1 TTTATTA
23947795 TTTATTA
1 TTTATTA
23947802 TTTATTA
1 TTTATTA
23947809 TTTATTA
1 TTTATTA
23947816 TTTATTA
1 TTTATTA
23947823 TTTATTA
1 TTTATTA
23947830 TTTAT
1 TTTAT
23947835 GAGTTCAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTATTA
Found at i:23954665 original size:21 final size:23
Alignment explanation
Indices: 23954632--23954678 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
23954622 TGATGAGAAT
*
23954632 AAAATCTCTTTTTC-CTTATTTA
1 AAAATATCTTTTTCTCTTATTTA
*
23954654 AAAATATC-TTTTCTTTTATTTA
1 AAAATATCTTTTTCTCTTATTTA
23954676 AAA
1 AAA
23954679 GGAATAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.53
Consensus pattern (23 bp):
AAAATATCTTTTTCTCTTATTTA
Found at i:23962135 original size:84 final size:84
Alignment explanation
Indices: 23961994--23962160 Score: 334
Period size: 84 Copynumber: 2.0 Consensus size: 84
23961984 GACTTTCAGC
23961994 TTTGCTCTTTTATCTATTGTAGATTTGTTTCCAGATGCCTTTGAAGCCTTTTTAATCCTTTCATC
1 TTTGCTCTTTTATCTATTGTAGATTTGTTTCCAGATGCCTTTGAAGCCTTTTTAATCCTTTCATC
23962059 GACTCCTCTCCTTTTCTTA
66 GACTCCTCTCCTTTTCTTA
23962078 TTTGCTCTTTTATCTATTGTAGATTTGTTTCCAGATGCCTTTGAAGCCTTTTTAATCCTTTCATC
1 TTTGCTCTTTTATCTATTGTAGATTTGTTTCCAGATGCCTTTGAAGCCTTTTTAATCCTTTCATC
23962143 GACTCCTCTCCTTTTCTT
66 GACTCCTCTCCTTTTCTT
23962161 TCTTCTCCTT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.15, C:0.24, G:0.11, T:0.50
Consensus pattern (84 bp):
TTTGCTCTTTTATCTATTGTAGATTTGTTTCCAGATGCCTTTGAAGCCTTTTTAATCCTTTCATC
GACTCCTCTCCTTTTCTTA
Found at i:23969522 original size:130 final size:130
Alignment explanation
Indices: 23969368--23969740 Score: 498
Period size: 130 Copynumber: 2.9 Consensus size: 130
23969358 TTAGAAGAGC
* * *
23969368 CGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAAC-AATCGAGAAATTGCTACCCAACACGT
1 CGAGTGAAATTTTGAAGGGATATTTGATTATTTTGAGCAAAT-GAGAAATTGCAACCCAACACGT
* * * * *
23969432 TAGGGCACGATCCCGCGAATTGCCAAATATCACATATCGCCTTCGTTTTAGGGATTTTAAAAGAC
65 TAGGGCACGATTCCGTGAATTGCCAAACATCAAATATCGTCTTCGTTTTAGGGATTTTAAAAGAC
23969497 A
130 A
* * * *
23969498 CGAGCGAAATTTTAAAGTGATATTTGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTT
1 CGAGTGAAATTTTGAAGGGATATTTGATTATTTTGAGCAAATGAGAAATTGCAACCCAACACGTT
* * * * *
23969563 AGGACACGATTCCGTGAATTGCCAAACATCAAATCTCATCTTCGTTTAAGGGATTTTAAAAGATA
66 AGGGCACGATTCCGTGAATTGCCAAACATCAAATATCGTCTTCGTTTTAGGGATTTTAAAAGACA
* * * *
23969628 TGAATGAAATTTCGAAGGGAAATTTGATTATTTTGAGCAAATGCA-AAATTGCAACCCAACACGT
1 CGAGTGAAATTTTGAAGGGATATTTGATTATTTTGAGCAAATG-AGAAATTGCAACCCAACACGT
* * *
23969692 TAGGGCACGATTCCGTGAATTGACGAACATCAAATTTCGTCTTCGTTTT
65 TAGGGCACGATTCCGTGAATTGCCAAACATCAAATATCGTCTTCGTTTT
23969741 GAAGAATTTT
Statistics
Matches: 210, Mismatches: 31, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
130 207 0.99
131 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (130 bp):
CGAGTGAAATTTTGAAGGGATATTTGATTATTTTGAGCAAATGAGAAATTGCAACCCAACACGTT
AGGGCACGATTCCGTGAATTGCCAAACATCAAATATCGTCTTCGTTTTAGGGATTTTAAAAGACA
Found at i:23972650 original size:132 final size:132
Alignment explanation
Indices: 23972478--23972827 Score: 558
Period size: 132 Copynumber: 2.7 Consensus size: 132
23972468 AATCGTCATT
* * * *
23972478 CTACTCCACTACAACTTTAGGGAGCTAGGGT-GATGGCTTAAATCTGCTTCACTGCAACATCAAG
1 CTACTCCACTACAACTTTAGGGAGCTAGGCTAG-TGACTTAAATCTGCTTCACTGCAACTTCAGG
23972542 AAGCAAAGATTCGTCGTCTTCGATCTATTCCACTGCAACTTCAGGGAAATAAGATCTAAAATTTC
65 AAGCAAAGATTCGTCGTCTTCGATCTATTCCACTGCAACTTCAGGGAAATAAGATCTAAAATTTC
23972607 AAC
130 AAC
* * *
23972610 CTACTCCACTACAACTTGAGGGAGCTAGGCTAGTGACTTAAATCTACTTCGCTGCAACTTCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGCTAGTGACTTAAATCTGCTTCACTGCAACTTCAGGA
* * * *
23972675 AGCCAAGATTCGTCATCTTCGATCTGTTCCACTGCAACTTCAGGGAAATGAGATCTAAAATTTCA
66 AGCAAAGATTCGTCGTCTTCGATCTATTCCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCA
23972740 AC
131 AC
* *
23972742 CTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATGTGCTTCACTGCAACTTCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGCTAGTGACTTAAATCTGCTTCACTGCAACTTCAGGA
*
23972807 AGCTAAGATTCGTCGTCTTCG
66 AGCAAAGATTCGTCGTCTTCG
23972828 GTCTTCTAGA
Statistics
Matches: 199, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 198 0.99
133 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (132 bp):
CTACTCCACTACAACTTTAGGGAGCTAGGCTAGTGACTTAAATCTGCTTCACTGCAACTTCAGGA
AGCAAAGATTCGTCGTCTTCGATCTATTCCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCA
AC
Found at i:23984866 original size:130 final size:130
Alignment explanation
Indices: 23984393--23984866 Score: 470
Period size: 130 Copynumber: 3.6 Consensus size: 130
23984383 AGGAATACTC
* * ** * * * * **
23984393 GATTGTTTTGAGCAAACGAGAAATCACAACCCAGCACGATAAGGCATGATTCC-CGAATTGTGAA
1 GATTATTTTGAGCAAATGAGAAATTTCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAA
* * * * * * * * *
23984457 ACATCGAGTATTGCCCTCATTTTAAAGGATTTTTAGAAGAGC-CGAGTGAAATTTTGAAGGGATA
66 ACATCAAATATCGTCTTC-GTTTAAGGGA-TTTTAAAAGA-CACGAATGAAATTTTGAAGGGATA
23984521 TTT
128 TTT
* * * *
23984524 GATTATTTTAAAC-AATCGAGAAATTGT-TACCCAACACGTTAGGGCACGATCCCGCGAATTGCC
1 GATTATTTTGAGCAAAT-GAGAAATT-TCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCC
* * * * ** * *
23984587 AAATATCACATATCGCCTTCGTTTTAGGGATTTTAAAAGACACGAGCGAAATTTTAAAGTGATAT
64 AAACATCAAATATCGTCTTCGTTTAAGGGATTTTAAAAGACACGAATGAAATTTTGAAGGGATAT
23984652 TT
129 TT
* * * *
23984654 GATTATTTTGAGCAAATGTGAAATTGCAACACAACACGTTAGGGCACGATTCCGTGAATTGCCAA
1 GATTATTTTGAGCAAATGAGAAATTTCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAA
* * * * * *
23984719 ACATCAAATCTCATCTTCGTTTAAGGGATTTTAAAAGATATGAATGAAATTTCGAAGGGAAATTT
66 ACATCAAATATCGTCTTCGTTTAAGGGATTTTAAAAGACACGAATGAAATTTTGAAGGGATATTT
* * *
23984784 GATTATTTTGAGCAAATGCGAAATTTCAACCCAACACGTTAGGGCACGATTCTGCGAATTGCCGA
1 GATTATTTTGAGCAAATGAGAAATTTCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAA
*
23984849 ACATCAAATTTCGTCTTC
66 ACATCAAATATCGTCTTC
23984867 TTTTTGAAGA
Statistics
Matches: 280, Mismatches: 57, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
129 1 0.00
130 211 0.75
131 47 0.17
132 21 0.08
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (130 bp):
GATTATTTTGAGCAAATGAGAAATTTCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAA
ACATCAAATATCGTCTTCGTTTAAGGGATTTTAAAAGACACGAATGAAATTTTGAAGGGATATTT
Found at i:23987264 original size:2 final size:2
Alignment explanation
Indices: 23987259--23987298 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
23987249 TTGTAAAAAA
* *
23987259 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23987299 TAATGGACTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:23987553 original size:29 final size:29
Alignment explanation
Indices: 23987521--23987578 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
23987511 AGGAAATAGA
23987521 GAGTAAAAAAGAAAAAAGAATAAAATTTG
1 GAGTAAAAAAGAAAAAAGAATAAAATTTG
23987550 GAGTAAAAAAGAAAAAAGAATAAAATTTG
1 GAGTAAAAAAGAAAAAAGAATAAAATTTG
23987579 TAGTCTTAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (29 bp):
GAGTAAAAAAGAAAAAAGAATAAAATTTG
Found at i:23993512 original size:7 final size:6
Alignment explanation
Indices: 23993492--23993521 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
23993482 AATAAAGTTT
*
23993492 AAATAA AAATAA AAGTAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA
23993522 TAGTAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:23993513 original size:18 final size:17
Alignment explanation
Indices: 23993492--23993533 Score: 66
Period size: 18 Copynumber: 2.4 Consensus size: 17
23993482 AATAAAGTTT
23993492 AAATAAAAATAAAAGTAA
1 AAATAAAAATAAAAGT-A
*
23993510 AAATAAAAATAATAGTA
1 AAATAAAAATAAAAGTA
23993527 AAATAAA
1 AAATAAA
23993534 GGGACTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (17 bp):
AAATAAAAATAAAAGTA
Found at i:23995103 original size:19 final size:18
Alignment explanation
Indices: 23995061--23995095 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23995051 CAATTATAAC
*
23995061 AAAAACAAAAACAAATAT
1 AAAAATAAAAACAAATAT
*
23995079 AAAAATAAAAATAAATA
1 AAAAATAAAAACAAATA
23995096 ATGAAAATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAAATAAAAACAAATAT
Found at i:24008114 original size:68 final size:68
Alignment explanation
Indices: 24008026--24008154 Score: 231
Period size: 68 Copynumber: 1.9 Consensus size: 68
24008016 CACATGTATG
*
24008026 TATGTATGTATGAATAGGATTACATCCCCATAATTAATATGGGCCATATCTCATAGCCATAGCAC
1 TATGCATGTATGAATAGGATTACATCCCCATAATTAATATGGGCCATATCTCATAGCCATAGCAC
24008091 ATA
66 ATA
* *
24008094 TATGCATGTATGAATAGGATTACATCCCCATAATTAATATGGGCCATATCTTATGGCCATA
1 TATGCATGTATGAATAGGATTACATCCCCATAATTAATATGGGCCATATCTCATAGCCATA
24008155 TACAAAATGA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 58 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (68 bp):
TATGCATGTATGAATAGGATTACATCCCCATAATTAATATGGGCCATATCTCATAGCCATAGCAC
ATA
Found at i:24010056 original size:5 final size:5
Alignment explanation
Indices: 24010046--24010070 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
24010036 AATGTCAACC
24010046 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
24010071 TTTATTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:24011660 original size:32 final size:32
Alignment explanation
Indices: 24011624--24011685 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
24011614 AAAAAAAGTA
24011624 GAAAAA-AGAAAAAGAAAAAAGAAGAAGCTTAT
1 GAAAAATA-AAAAAGAAAAAAGAAGAAGCTTAT
*
24011656 GAAAAATATAAAAGAAAAAAGAAGAAGCTT
1 GAAAAATAAAAAAGAAAAAAGAAGAAGCTT
24011686 TCTTCTTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 27 0.96
33 1 0.04
ACGTcount: A:0.68, C:0.03, G:0.18, T:0.11
Consensus pattern (32 bp):
GAAAAATAAAAAAGAAAAAAGAAGAAGCTTAT
Found at i:24014560 original size:19 final size:19
Alignment explanation
Indices: 24014538--24014576 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
24014528 ACCTAAAAAA
24014538 TAATTTAAAAATCTTTCTT
1 TAATTTAAAAATCTTTCTT
24014557 TAATTTAAAAATCTTTCTT
1 TAATTTAAAAATCTTTCTT
24014576 T
1 T
24014577 TTTGGTGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (19 bp):
TAATTTAAAAATCTTTCTT
Found at i:24014985 original size:31 final size:30
Alignment explanation
Indices: 24014960--24015017 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
24014950 ATTATATAAT
*
24014960 TAGTCGAAAATTTTTATTTAAATTATTAAAC
1 TAGTCG-AAAGTTTTATTTAAATTATTAAAC
* *
24014991 TATTCGAAAGTTTTATTTAAGTTATTA
1 TAGTCGAAAGTTTTATTTAAATTATTA
24015018 GTTGTTAGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (30 bp):
TAGTCGAAAGTTTTATTTAAATTATTAAAC
Found at i:24021300 original size:28 final size:28
Alignment explanation
Indices: 24021260--24021313 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
24021250 GCTTAAAAGC
24021260 TTAGTGTGAGTCTAAGCAAATATAGGCA
1 TTAGTGTGAGTCTAAGCAAATATAGGCA
24021288 TTAGTGTGAGTCTAAGCAAATATAGG
1 TTAGTGTGAGTCTAAGCAAATATAGG
24021314 AATTTCATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (28 bp):
TTAGTGTGAGTCTAAGCAAATATAGGCA
Found at i:24022067 original size:15 final size:15
Alignment explanation
Indices: 24022047--24022076 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24022037 TATCAACCAT
24022047 TCGATTAGTTAATTA
1 TCGATTAGTTAATTA
24022062 TCGATTAGTTAATTA
1 TCGATTAGTTAATTA
24022077 AATGTTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (15 bp):
TCGATTAGTTAATTA
Found at i:24025094 original size:55 final size:55
Alignment explanation
Indices: 24025025--24025160 Score: 263
Period size: 55 Copynumber: 2.5 Consensus size: 55
24025015 TCGTTGCAGT
24025025 GGATTTAGCCTGGACTGGTAATCCCGACATTTACTCTATGAGTTTATACTATGGG
1 GGATTTAGCCTGGACTGGTAATCCCGACATTTACTCTATGAGTTTATACTATGGG
24025080 GGATTTAGCCTGGACTGGTAATCCCGACATTTACTCTATGAGTTTATACTATGGG
1 GGATTTAGCCTGGACTGGTAATCCCGACATTTACTCTATGAGTTTATACTATGGG
*
24025135 GGATTTAGCCTAGACTGGTAATCCCG
1 GGATTTAGCCTGGACTGGTAATCCCG
24025161 CTGTATGAGT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
55 80 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (55 bp):
GGATTTAGCCTGGACTGGTAATCCCGACATTTACTCTATGAGTTTATACTATGGG
Found at i:24031004 original size:46 final size:46
Alignment explanation
Indices: 24030951--24031355 Score: 560
Period size: 46 Copynumber: 8.8 Consensus size: 46
24030941 AGTGTGCTCT
*
24030951 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
24030997 GTGATATGGAATATGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
24031043 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
24031089 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
24031135 GTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
24031181 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
24031227 CTAACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** **
24031273 ATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
24031320 ATGACA-GAAAACGAGTAAAACCATCGTTGAAAGATA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATA
24031356 TTATGACATC
Statistics
Matches: 332, Mismatches: 26, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 290 0.87
47 42 0.13
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:24034130 original size:45 final size:43
Alignment explanation
Indices: 24034025--24034138 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 43
24034015 CGGTATTTCA
* * *
24034025 CCTGCTAGGCTC-GAGGCCCGATATCATTTCACCGGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGA-ATAATTTCACCGGCATAATAG
*
24034068 CCTACTAGGCTCGAAAGGCCCGAATAATGTCTCACCGGCATAATAG
1 CCTGCTAGGCTC-AAAGGCCCGAATAAT-T-TCACCGGCATAATAG
*
24034114 TCTGCTAGGCTCAAAGGCCCGAATA
1 CCTGCTAGGCTCAAAGGCCCGAATA
24034139 TAATACCAAC
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
43 11 0.18
44 4 0.07
45 22 0.36
46 24 0.39
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (43 bp):
CCTGCTAGGCTCAAAGGCCCGAATAATTTCACCGGCATAATAG
Found at i:24034196 original size:38 final size:38
Alignment explanation
Indices: 24034131--24034329 Score: 317
Period size: 38 Copynumber: 5.2 Consensus size: 38
24034121 GGCTCAAAGG
* * * *
24034131 CCCGAATATAATACCAACACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
24034169 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
24034207 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
24034245 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * **
24034283 CCCGGATATATTACCAGCACGAAGCTTGCGAAATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
24034321 CCCGGATAT
1 CCCGGATAT
24034330 CATATTTCGA
Statistics
Matches: 151, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 151 1.00
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:24035213 original size:43 final size:43
Alignment explanation
Indices: 24035115--24035199 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
24035105 ATAGCCTTAA
24035115 ATCATTACATATTCGGCACATTAACTAAATAAAATTTACATTT
1 ATCATTACATATTCGGCACATTAACTAAATAAAATTTACATTT
24035158 ATCATTACATATTCGGCACATTAACTAAATAAAATTTACATT
1 ATCATTACATATTCGGCACATTAACTAAATAAAATTTACATT
24035200 CTCTTTGCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.36
Consensus pattern (43 bp):
ATCATTACATATTCGGCACATTAACTAAATAAAATTTACATTT
Found at i:24041278 original size:33 final size:33
Alignment explanation
Indices: 24041251--24041315 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
24041241 TAAAATTTTT
*
24041251 AAATGTTTTAATATAATTAAATATAAAAATAAA
1 AAATATTTTAATATAATTAAATATAAAAATAAA
* *
24041284 AAATATTTTAGTATAATTTAATATAAAAATAA
1 AAATATTTTAATATAATTAAATATAAAAATAA
24041316 TTATATTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (33 bp):
AAATATTTTAATATAATTAAATATAAAAATAAA
Found at i:24041355 original size:55 final size:61
Alignment explanation
Indices: 24041296--24041419 Score: 138
Period size: 61 Copynumber: 2.1 Consensus size: 61
24041286 ATATTTTAGT
24041296 ATAATTTAATA-TAAAA-ATAATT-A-TA-TTA-AGAATTTTTATTAAATTATATTTAATA
1 ATAATTTAATATTAAAATATAATTAATTATTTATAGAATTTTTATTAAATTATATTTAATA
* ***
24041351 ATAA-TT-ATATTAAAATATGATTAAATTATTTATTTTTATTTTTATTAAATTATATTTAATA
1 ATAATTTAATATTAAAATATAATT-AATTATTTA-TAGAATTTTTATTAAATTATATTTAATA
24041412 ATAATTTA
1 ATAATTTA
24041420 TTAAAATTTA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
53 3 0.05
54 7 0.13
55 9 0.16
57 1 0.02
58 2 0.04
59 3 0.05
61 28 0.51
62 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (61 bp):
ATAATTTAATATTAAAATATAATTAATTATTTATAGAATTTTTATTAAATTATATTTAATA
Found at i:24041624 original size:16 final size:15
Alignment explanation
Indices: 24041605--24041646 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
24041595 TACTAGAGCC
*
24041605 CTATTCCATTACAGCT
1 CTATTCCATTACA-AT
24041621 CTATTCCATTACAAT
1 CTATTCCATTACAAT
24041636 CATATTCCATT
1 C-TATTCCATT
24041647 CCAGTAAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 2 0.08
16 22 0.92
ACGTcount: A:0.29, C:0.29, G:0.02, T:0.40
Consensus pattern (15 bp):
CTATTCCATTACAAT
Found at i:24046895 original size:27 final size:29
Alignment explanation
Indices: 24046865--24046927 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
24046855 TATTAAGCAC
* **
24046865 CAAATTGGAC-TAAAAAAAAT-TAATTAT
1 CAAATTAGACTTAAAAAAAATATAAAAAT
24046892 CAAATTAGACTTAAAAAAAATATAAAAAT
1 CAAATTAGACTTAAAAAAAATATAAAAAT
24046921 CAAATTA
1 CAAATTA
24046928 AAGGTAGGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 9 0.29
28 10 0.32
29 12 0.39
ACGTcount: A:0.60, C:0.08, G:0.05, T:0.27
Consensus pattern (29 bp):
CAAATTAGACTTAAAAAAAATATAAAAAT
Found at i:24050238 original size:15 final size:15
Alignment explanation
Indices: 24050208--24050256 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
24050198 AATTAGTTAA
24050208 TTAAT-TATTTTAATT
1 TTAATATATTTT-ATT
24050223 TTAATATATTTTATT
1 TTAATATATTTTATT
* * *
24050238 TAAATATAGTTAATT
1 TTAATATATTTTATT
24050253 TTAA
1 TTAA
24050257 CGAATTCTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 23 0.79
16 6 0.21
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (15 bp):
TTAATATATTTTATT
Found at i:24050424 original size:31 final size:31
Alignment explanation
Indices: 24050375--24050447 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 31
24050365 AAATTTTGAA
* * *
24050375 TTTAGTTACTAACATTTTAGATCATTTCTAT
1 TTTAGTCACTCACATTTTAAATCATTTCTAT
* **
24050406 TTTAGTCACTCACGTTTTAAATTGTTTCTAT
1 TTTAGTCACTCACATTTTAAATCATTTCTAT
*
24050437 TTTGGTCACTC
1 TTTAGTCACTC
24050448 TCCATTAAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.23, C:0.16, G:0.10, T:0.51
Consensus pattern (31 bp):
TTTAGTCACTCACATTTTAAATCATTTCTAT
Found at i:24050999 original size:48 final size:48
Alignment explanation
Indices: 24050928--24051024 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
24050918 AATCCACACC
*
24050928 TATCTCTAAGCATAAAATTTATCTTCAACTAATTTTTTTGTAATTTAT
1 TATCTCTAAGCATAAAATTTATCTTCAACTAATTTGTTTGTAATTTAT
* *
24050976 TATCTTTAAGCATAAAATTTATCTTCACCTAATTTGTTTGTAATTTAT
1 TATCTCTAAGCATAAAATTTATCTTCAACTAATTTGTTTGTAATTTAT
24051024 T
1 T
24051025 TAGAAAAATG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.32, C:0.12, G:0.05, T:0.51
Consensus pattern (48 bp):
TATCTCTAAGCATAAAATTTATCTTCAACTAATTTGTTTGTAATTTAT
Found at i:24053347 original size:23 final size:23
Alignment explanation
Indices: 24053303--24053347 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
24053293 ATCTATATAA
* *
24053303 TTTATATATTTTTCTTTTAAATT
1 TTTAAATATTTTTCTTTAAAATT
24053326 TTTAAATATTTTT-TTATAAAAT
1 TTTAAATATTTTTCTT-TAAAAT
24053348 ATAGAATATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTAAATATTTTTCTTTAAAATT
Found at i:24061039 original size:39 final size:39
Alignment explanation
Indices: 24060982--24061177 Score: 279
Period size: 39 Copynumber: 5.0 Consensus size: 39
24060972 CCTAGGCACC
* *
24060982 GTGATTTTCAGGGAAGAGATTCAAGTTCTG-TGGGGGGCA
1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCT-AGGGGCA
*
24061021 GTGATTTTCATGGCAGAGATTCAAGTTCTGCTAGGGGCA
1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCTAGGGGCA
* *
24061060 GTGATTTTCAGGGCAAAGATTCAAGTTCAGCTAGGGGCA
1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCTAGGGGCA
24061099 GTGATTTTCAGGGCAGAGATTCAAGTTCTG-TGAGGGGCA
1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCT-AGGGGCA
* * * *
24061138 GTGACTTCCTGGGCAGAGATTCAAGTTTTGCTAGGGGCA
1 GTGATTTTCAGGGCAGAGATTCAAGTTCTGCTAGGGGCA
24061177 G
1 G
24061178 GTCCTCATCG
Statistics
Matches: 142, Mismatches: 12, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 139 0.98
40 2 0.01
ACGTcount: A:0.23, C:0.14, G:0.34, T:0.28
Consensus pattern (39 bp):
GTGATTTTCAGGGCAGAGATTCAAGTTCTGCTAGGGGCA
Found at i:24068108 original size:13 final size:14
Alignment explanation
Indices: 24068087--24068124 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
24068077 ATATTTGGAT
24068087 TAAATATTTAA-TAA
1 TAAA-ATTTAATTAA
*
24068101 TAAAATTTAATTGA
1 TAAAATTTAATTAA
24068115 TAAAATTTAA
1 TAAAATTTAA
24068125 ATTATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
TAAAATTTAATTAA
Found at i:24072231 original size:10 final size:10
Alignment explanation
Indices: 24072204--24072253 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
24072194 TTAAATTCTA
*
24072204 AAAGATAAGT
1 AAAGATAAAT
24072214 ACAA-ATAAAT
1 A-AAGATAAAT
*
24072224 AAAGATAATT
1 AAAGATAAAT
24072234 AAAGATAAAT
1 AAAGATAAAT
24072244 GAAA-ATAAAT
1 -AAAGATAAAT
24072254 CCTAAAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 27 0.79
11 5 0.15
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:24073411 original size:20 final size:21
Alignment explanation
Indices: 24073372--24073417 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
24073362 ATAAATAATA
*
24073372 TATATTATATAATATATTTTT
1 TATATTATACAATATATTTTT
*
24073393 TATATTA-ACAATGTATTTTT
1 TATATTATACAATATATTTTT
24073413 TATAT
1 TATAT
24073418 GTTTTATGCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TATATTATACAATATATTTTT
Found at i:24081137 original size:31 final size:31
Alignment explanation
Indices: 24081102--24081165 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
24081092 ACATAAAAAA
24081102 TTCTACTAAGGGTATTCTAGTCATTTCAACT
1 TTCTACTAAGGGTATTCTAGTCATTTCAACT
*
24081133 TTCTACTAAGGGTATTCTGGTCATTTCAACT
1 TTCTACTAAGGGTATTCTAGTCATTTCAACT
24081164 TT
1 TT
24081166 TTTGTCTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (31 bp):
TTCTACTAAGGGTATTCTAGTCATTTCAACT
Found at i:24082357 original size:48 final size:51
Alignment explanation
Indices: 24082294--24082409 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 51
24082284 TTTTTAAAGG
* * * *
24082294 GTGACATTTCCTCTTCCATA-TTT-CT-TTTTTTTTTCTTTCTTTTTTCTT
1 GTGATATTTCTTCTTCCATATTTTGCTCTTTTTTTTTCTTTCTTTTTCCTA
* * *
24082342 GTGATGTTTCTTCTTCCCTATTTTGTTCTTTTTTTTTCTTTCTTTTTCCTA
1 GTGATATTTCTTCTTCCATATTTTGCTCTTTTTTTTTCTTTCTTTTTCCTA
24082393 GTGATATTTCTTCTTCC
1 GTGATATTTCTTCTTCC
24082410 CAATTTCATT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
48 16 0.28
49 3 0.05
50 1 0.02
51 37 0.65
ACGTcount: A:0.08, C:0.21, G:0.07, T:0.65
Consensus pattern (51 bp):
GTGATATTTCTTCTTCCATATTTTGCTCTTTTTTTTTCTTTCTTTTTCCTA
Found at i:24082386 original size:51 final size:51
Alignment explanation
Indices: 24082319--24082415 Score: 158
Period size: 51 Copynumber: 1.9 Consensus size: 51
24082309 CCATATTTCT
* * * *
24082319 TTTTTTTTTCTTTCTTTTTTCTTGTGATGTTTCTTCTTCCCTATTTTGTTC
1 TTTTTTTTTCTTTCTTTTTCCTAGTGATATTTCTTCTTCCCAATTTTGTTC
24082370 TTTTTTTTTCTTTCTTTTTCCTAGTGATATTTCTTCTTCCCAATTT
1 TTTTTTTTTCTTTCTTTTTCCTAGTGATATTTCTTCTTCCCAATTT
24082416 CATTTTATCT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.07, C:0.19, G:0.06, T:0.68
Consensus pattern (51 bp):
TTTTTTTTTCTTTCTTTTTCCTAGTGATATTTCTTCTTCCCAATTTTGTTC
Found at i:24083013 original size:44 final size:43
Alignment explanation
Indices: 24082918--24083014 Score: 104
Period size: 44 Copynumber: 2.2 Consensus size: 43
24082908 ATGTTTAGCA
* *
24082918 AAAAAAAAGAAGAGAAAAGGAAAATGGGAAAAAGAAAGATCAT
1 AAAAAAAAGAAGAGAAAAGGAAAATGGGAAAAAGAAACATCAC
** * * * *
24082961 AGGGAAAAAGAAGAGAAAAGGAAATTGGGGAGAAGGAACATCACC
1 A-AAAAAAAGAAGAGAAAAGGAAAATGGGAAAAAGAAACATCA-C
24083006 AAAAAAAAG
1 AAAAAAAAG
24083015 GAAAAAAAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
43 1 0.02
44 40 0.95
45 1 0.02
ACGTcount: A:0.62, C:0.05, G:0.27, T:0.06
Consensus pattern (43 bp):
AAAAAAAAGAAGAGAAAAGGAAAATGGGAAAAAGAAACATCAC
Found at i:24092899 original size:7 final size:8
Alignment explanation
Indices: 24092880--24092909 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
24092870 TTTTCACGGT
24092880 TAAAATAA
1 TAAAATAA
24092888 TAAAAT-A
1 TAAAATAA
24092895 TAAAATAA
1 TAAAATAA
24092903 TAAAATA
1 TAAAATA
24092910 TTGATTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (8 bp):
TAAAATAA
Found at i:24092918 original size:15 final size:15
Alignment explanation
Indices: 24092880--24092910 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
24092870 TTTTCACGGT
24092880 TAAAATAATAAAATA
1 TAAAATAATAAAATA
24092895 TAAAATAATAAAATA
1 TAAAATAATAAAATA
24092910 T
1 T
24092911 TGATTAATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
TAAAATAATAAAATA
Found at i:24100711 original size:26 final size:27
Alignment explanation
Indices: 24100682--24100751 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 27
24100672 TTTGATTTTG
24100682 AATTAATTTTGGTTGAATTATTTC-TA-
1 AATTAATTTTGGTTGAATT-TTTCTTAT
*
24100708 AATTAATCTT-GTT-AATTTTTCTTAT
1 AATTAATTTTGGTTGAATTTTTCTTAT
* *
24100733 AATTAAATTAGGTTGAATT
1 AATTAATTTTGGTTGAATT
24100752 GAAAGATAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
23 4 0.11
24 6 0.17
25 10 0.28
26 12 0.33
27 4 0.11
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.53
Consensus pattern (27 bp):
AATTAATTTTGGTTGAATTTTTCTTAT
Found at i:24103092 original size:16 final size:16
Alignment explanation
Indices: 24103073--24103106 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24103063 AAATAAACAT
* *
24103073 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
24103089 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
24103105 AT
1 AT
24103107 TGGATGTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:24104074 original size:86 final size:87
Alignment explanation
Indices: 24103975--24104151 Score: 329
Period size: 86 Copynumber: 2.0 Consensus size: 87
24103965 ATGTAATTGA
*
24103975 GTTTAAGTATAATGTTGGTTTGGTATATATAAACTTATGTTTGTGTTTAAAGCTGTAATTTGGC-
1 GTTTAAGCATAATGTTGGTTTGGTATATATAAACTTATGTTTGTGTTTAAAGCTGTAATTTGGCA
24104039 ATGTTGTTTTGAGCCAAGGCTT
66 ATGTTGTTTTGAGCCAAGGCTT
24104061 GTTTAAGCATAATGTTGGTTTGGTATATATAAACTTATGTTTGTGTTTAAAGCTGTAATTTGGCA
1 GTTTAAGCATAATGTTGGTTTGGTATATATAAACTTATGTTTGTGTTTAAAGCTGTAATTTGGCA
24104126 TATGTTGTTTTGAGCCAAGGCTT
66 -ATGTTGTTTTGAGCCAAGGCTT
24104149 GTT
1 GTT
24104152 AGGTGTAGGT
Statistics
Matches: 88, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
86 63 0.72
88 25 0.28
ACGTcount: A:0.24, C:0.07, G:0.23, T:0.45
Consensus pattern (87 bp):
GTTTAAGCATAATGTTGGTTTGGTATATATAAACTTATGTTTGTGTTTAAAGCTGTAATTTGGCA
ATGTTGTTTTGAGCCAAGGCTT
Found at i:24104553 original size:42 final size:42
Alignment explanation
Indices: 24104456--24104556 Score: 148
Period size: 42 Copynumber: 2.4 Consensus size: 42
24104446 AGACACACGG
* *
24104456 CTGGCACACGGACGTGTAAGGCCATTTCGAGAGTTACATGGC
1 CTGGCACACGGGCGTGTAAGGCCATATCGAGAGTTACATGGC
** * *
24104498 CTATCATATGGGCGTGTAAGGCCATATCGAGAGTTACATGGC
1 CTGGCACACGGGCGTGTAAGGCCATATCGAGAGTTACATGGC
24104540 CTGGCACACGGGCGTGT
1 CTGGCACACGGGCGTGT
24104557 GGCTTGGCCA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (42 bp):
CTGGCACACGGGCGTGTAAGGCCATATCGAGAGTTACATGGC
Found at i:24110326 original size:74 final size:74
Alignment explanation
Indices: 24110205--24110353 Score: 298
Period size: 74 Copynumber: 2.0 Consensus size: 74
24110195 ACAATAACAG
24110205 TTGATTGCTTGACAAGGGAAACAGTATTGAATGATTGGCTATGATCCAAGAAACCATCAATGGAC
1 TTGATTGCTTGACAAGGGAAACAGTATTGAATGATTGGCTATGATCCAAGAAACCATCAATGGAC
24110270 TTTGATATT
66 TTTGATATT
24110279 TTGATTGCTTGACAAGGGAAACAGTATTGAATGATTGGCTATGATCCAAGAAACCATCAATGGAC
1 TTGATTGCTTGACAAGGGAAACAGTATTGAATGATTGGCTATGATCCAAGAAACCATCAATGGAC
24110344 TTTGATATT
66 TTTGATATT
24110353 T
1 T
24110354 ACTTTTAGAT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (74 bp):
TTGATTGCTTGACAAGGGAAACAGTATTGAATGATTGGCTATGATCCAAGAAACCATCAATGGAC
TTTGATATT
Found at i:24122966 original size:24 final size:25
Alignment explanation
Indices: 24122934--24123004 Score: 65
Period size: 24 Copynumber: 2.8 Consensus size: 25
24122924 TTTTAGCTAT
* * *
24122934 TTTTTGGGTTTA-TGTTTAGGGTTC
1 TTTTAGGGTTTAGAGTTTAGAGTTC
*
24122958 TTTTAGGG-TTAGAGTTTTGAGTTC
1 TTTTAGGGTTTAGAGTTTAGAGTTC
24122982 TTTTAAGGGTTTTTAGAGTTTAG
1 TTTT-AGGG--TTTAGAGTTTAG
24123005 GGTATAGATT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
23 3 0.08
24 20 0.54
25 4 0.11
28 10 0.27
ACGTcount: A:0.15, C:0.03, G:0.28, T:0.54
Consensus pattern (25 bp):
TTTTAGGGTTTAGAGTTTAGAGTTC
Found at i:24124101 original size:16 final size:16
Alignment explanation
Indices: 24124080--24124113 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24124070 AATCAATTTC
*
24124080 TTCGAGTCAATTTAAA
1 TTCGAGTCAAGTTAAA
*
24124096 TTCGAGTCGAGTTAAA
1 TTCGAGTCAAGTTAAA
24124112 TT
1 TT
24124114 TTATAATTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (16 bp):
TTCGAGTCAAGTTAAA
Found at i:24126014 original size:85 final size:85
Alignment explanation
Indices: 24125871--24126028 Score: 199
Period size: 85 Copynumber: 1.9 Consensus size: 85
24125861 CCTATACTTG
* * ** * * *
24125871 CATAAAATGTCTAATGTGGTACTTGTACTTTGAAAATGTTTATTACGGTATATGAACTATTAATA
1 CATAAAATGTCCAATGTGGTACATGTACTTTGAAAATGTCCAATACGGTACACGAACTATTAATA
24125936 TATGTTTTCTTATGGTCTTT
66 TATGTTTTCTTATGGTCTTT
* ** * *
24125956 CATAAAATGTCCAATGTGGTACATGTAGTTTGAAAATGTCCAATGTGGTACCCGAACTATTTATA
1 CATAAAATGTCCAATGTGGTACATGTACTTTGAAAATGTCCAATACGGTACACGAACTATTAATA
*
24126021 TGTGTTTT
66 TATGTTTT
24126029 ATTACGGTAC
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
85 60 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (85 bp):
CATAAAATGTCCAATGTGGTACATGTACTTTGAAAATGTCCAATACGGTACACGAACTATTAATA
TATGTTTTCTTATGGTCTTT
Found at i:24128551 original size:33 final size:31
Alignment explanation
Indices: 24128506--24128580 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 31
24128496 AAGTAAAAAA
* * **
24128506 TAAAAAAGAATAATAATTGAAGGATAATGTAAT
1 TAAAAAATAATAATAAGTGAAAAATAAT-T-AT
24128539 TAAAAAATAATAATAAGTGAAAAATAATTAT
1 TAAAAAATAATAATAAGTGAAAAATAATTAT
24128570 TCAAAAAATAA
1 T-AAAAAATAA
24128581 CAATGAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 3 0.08
32 10 0.27
33 24 0.65
ACGTcount: A:0.63, C:0.01, G:0.09, T:0.27
Consensus pattern (31 bp):
TAAAAAATAATAATAAGTGAAAAATAATTAT
Found at i:24133552 original size:81 final size:84
Alignment explanation
Indices: 24133454--24133746 Score: 283
Period size: 88 Copynumber: 3.4 Consensus size: 84
24133444 GCCAAAGCTT
* * *
24133454 AACTCACCTCTCACAATATGAGTTGGTTTTTG-AAAC-TT-AAAAGAAGATTTTGAAAATGCCTC
1 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACTTTGAAAAGAAGATTTTGAAAATACCTC
* *
24133516 GACATGTGACCTGAGGCTC
66 GACATGTGACCCGAGGATC
*
24133535 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACTTAATTTGAAAAGTAGATTTTGAAAATA
1 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAC----TTTGAAAAGAAGATTTTGAAAATA
24133600 CCTCGACATGTGACCCGAGGATC
62 CCTCGACATGTGACCCGAGGATC
* * * * * **
24133623 AACTCACCTCTCGCGATATGAGTTGATTTCTAAAAATATAAATTGAAAAAAACAGAAATTGAAAA
1 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-CT---TTG-AAAAGA-AGATTTTGAAAA
* * *
24133688 TACCTC-AGC--GTGTCCTGAGGCTC
60 TACCTCGA-CATGTGACCCGAGGATC
* *
24133711 AACTCACTTCTCGCAATATGAGTTGATTTCTGAAAA
1 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
24133747 ATATAAATTG
Statistics
Matches: 178, Mismatches: 20, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
81 30 0.17
82 4 0.02
85 1 0.01
87 2 0.01
88 119 0.67
89 5 0.03
90 17 0.10
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (84 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACTTTGAAAAGAAGATTTTGAAAATACCTC
GACATGTGACCCGAGGATC
Found at i:24133642 original size:88 final size:89
Alignment explanation
Indices: 24133492--24133760 Score: 359
Period size: 88 Copynumber: 3.0 Consensus size: 89
24133482 TTTGAAACTT
*
24133492 AAAAGAAGATTTTGAAAATGCCTCGACATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAGAAGATTTTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
24133557 TTGATTTTTGAAAACT-TAATTTG
66 TTGATTTCTGAAAAATATAAATTG
* * * *
24133580 AAAAGTAGATTTTGAAAATACCTCGACATGTGACCCGAGGATCAACTCACCTCTCGCGATATGAG
1 AAAAGAAGATTTTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
24133645 TTGATTTCT-AAAAATATAAATTG
66 TTGATTTCTGAAAAATATAAATTG
* ** * *
24133668 AAAAAAACAGAAATTGAAAATACCTC-AGC--GTGTCCTGAGGCTCAACTCACTTCTCGCAATAT
1 -AAAAGA-AGATTTTGAAAATACCTCGA-CATGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
24133730 GAGTTGATTTCTGAAAAATATAAATTG
63 GAGTTGATTTCTGAAAAATATAAATTG
24133757 AAAA
1 AAAA
24133761 AACAGAAATT
Statistics
Matches: 159, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
87 5 0.03
88 118 0.74
89 19 0.12
90 17 0.11
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (89 bp):
AAAAGAAGATTTTGAAAATACCTCGACATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTCTGAAAAATATAAATTG
Found at i:24133769 original size:15 final size:15
Alignment explanation
Indices: 24133751--24133789 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
24133741 TGAAAAATAT
24133751 AAATTGAAAAAACAG
1 AAATTGAAAAAACAG
* *
24133766 AAATTG-AACAGCAG
1 AAATTGAAAAAACAG
24133780 AAATTGAAAA
1 AAATTGAAAA
24133790 TTCCTCGGCG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.62, C:0.08, G:0.15, T:0.15
Consensus pattern (15 bp):
AAATTGAAAAAACAG
Found at i:24133855 original size:102 final size:103
Alignment explanation
Indices: 24133675--24133864 Score: 292
Period size: 102 Copynumber: 1.8 Consensus size: 103
24133665 TTGAAAAAAA
*
24133675 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
*
24133740 CTGAAAAATAT-AAATTGAAAAAACAGAAATTGAACAG
66 CTGAAAAAGATAAAATTGAAAAAACAGAAATTGAACAG
* *
24133777 CAGAAATTGAAAATTCCTCGGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
* ***
24133842 TTTTGAAAGATAAAAATTGAAAA
66 CTGAAAAAGAT-AAAATTGAAAA
24133865 TACCTCAACG
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
102 68 0.87
104 10 0.13
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.27
Consensus pattern (103 bp):
CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
CTGAAAAAGATAAAATTGAAAAAACAGAAATTGAACAG
Found at i:24133892 original size:75 final size:75
Alignment explanation
Indices: 24133780--24133918 Score: 224
Period size: 75 Copynumber: 1.9 Consensus size: 75
24133770 TGAACAGCAG
* ** *
24133780 AAATTGAAAATTCCTCGGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
24133845 TGAAAGATAA
66 TGAAAGATAA
* *
24133855 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
24133919 AAAAACAGAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 58 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (75 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAGATAA
Done.