Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 81 of 352
Found at i:25522388 original size:18 final size:19
Alignment explanation
Indices: 25522350--25522390 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
25522340 TGGTTCATGT
25522350 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
25522369 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
25522387 TTTC
1 TTTC
25522391 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:25522580 original size:39 final size:38
Alignment explanation
Indices: 25522513--25522647 Score: 92
Period size: 39 Copynumber: 3.4 Consensus size: 38
25522503 ACCAATATGG
* * *
25522513 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
25522552 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * * *
25522590 TACCTAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
25522631 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
25522648 ACTCGAGGTT
Statistics
Matches: 71, Mismatches: 20, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
38 17 0.24
39 35 0.49
40 4 0.06
41 15 0.21
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:25522913 original size:18 final size:19
Alignment explanation
Indices: 25522887--25522925 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
25522877 TTTCAATTCA
25522887 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
25522906 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
25522924 AT
1 AT
25522926 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:25524250 original size:5 final size:5
Alignment explanation
Indices: 25524240--25524296 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
25524230 TTACTTATTT
* *
25524240 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
25524288 ATAT- ATATA
1 ATATA ATATA
25524297 TTTTAACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 7 0.16
7 4 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:25524256 original size:12 final size:12
Alignment explanation
Indices: 25524239--25524294 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
25524229 TTTACTTATT
25524239 TATATAATATAA
1 TATATAATATAA
25524251 TATATAATATAATA
1 TATATAATAT-A-A
25524265 TACTATAATATAA
1 TA-TATAATATAA
*
25524278 TA-ATAATTTAA
1 TATATAATATAA
25524289 TATATA
1 TATATA
25524295 TATTTTAACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:25524309 original size:26 final size:26
Alignment explanation
Indices: 25524241--25524296 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
25524231 TACTTATTTA
*
25524241 TATAATATAATATATAATATAATATAC
1 TATAATATAACA-ATAATATAATATAC
* *
25524268 TATAATATAATAATAATTTAATATA-
1 TATAATATAACAATAATATAATATAC
25524293 TATA
1 TATA
25524297 TTTTAACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 12 0.43
27 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TATAATATAACAATAATATAATATAC
Found at i:25524893 original size:7 final size:7
Alignment explanation
Indices: 25524881--25524906 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
25524871 TAGTCGTTTC
25524881 GTATTTA
1 GTATTTA
25524888 GTATTTA
1 GTATTTA
25524895 GTATTTA
1 GTATTTA
25524902 GTATT
1 GTATT
25524907 ACCTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:25525566 original size:18 final size:18
Alignment explanation
Indices: 25525524--25525560 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
25525514 TGCCAGGTGC
*
25525524 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
*
25525542 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTATAT
25525560 G
1 G
25525561 CTTCCTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.27, G:0.11, T:0.41
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:25526111 original size:14 final size:15
Alignment explanation
Indices: 25526085--25526114 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
25526075 AGTCAATATT
25526085 TTTATTATTTTTATA
1 TTTATTATTTTTATA
25526100 TTTATT-TTTTTATA
1 TTTATTATTTTTATA
25526114 T
1 T
25526115 AGTTTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTATTATTTTTATA
Found at i:25526283 original size:129 final size:130
Alignment explanation
Indices: 25525973--25526351 Score: 645
Period size: 129 Copynumber: 2.9 Consensus size: 130
25525963 TTGTAGAAAC
25525973 TTTTTTTATATAGTTTC-ATATAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACT
1 TTTTTTTATATAGTTTCAAT-TAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACT
25526037 TTTTTTGAATTTTATTAAAATAAATGTTCTTTTAAATTAGTCAATATTTTTATTATTTTTATATT
65 TTTTTT-AATTTTATTAAAATAAATGTTCTTTTAAATTAGTCAATATTTTTATTATTTTTATATT
25526102 TA
129 TA
* *
25526104 TTTTTTTATATAGTTTTAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTGCTT
1 TTTTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTT
25526169 TTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGTCAATATTTTTATTATTTTTATATTTA
66 TTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGTCAATATTTTTATTATTTTTATATTTA
* **
25526234 -TTTTTTATTTAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACCA
1 TTTTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTT
* * *
25526298 TTTTTAATTTTAATACAATAAATGTTCTTTTAAATTAGCCAATAATTTTTATTA
66 TTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGTCAAT-ATTTTTATTA
25526352 AAATAAATGT
Statistics
Matches: 236, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
129 99 0.42
130 70 0.30
131 65 0.28
132 2 0.01
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.56
Consensus pattern (130 bp):
TTTTTTTATATAGTTTCAATTAATAAAATAAAAGTTGTTTTTAATATTTTAATTGTACTTTACTT
TTTTTAATTTTATTAAAATAAATGTTCTTTTAAATTAGTCAATATTTTTATTATTTTTATATTTA
Found at i:25526380 original size:39 final size:38
Alignment explanation
Indices: 25526305--25526392 Score: 104
Period size: 39 Copynumber: 2.3 Consensus size: 38
25526295 CCATTTTTAA
* * * *
25526305 TTTTAATACAATAAATGTTCTTTTAAATTAGCCAATAAT
1 TTTTAATAAAATAAATGTTATTTTAAATGAGACAAT-AT
* * *
25526344 TTTTATTAAAATAAATGTTATTTTGAATGCGACAATAT
1 TTTTAATAAAATAAATGTTATTTTAAATGAGACAATAT
25526382 TTTTAATAAAA
1 TTTTAATAAAA
25526393 CATAAATAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
38 12 0.29
39 29 0.71
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (38 bp):
TTTTAATAAAATAAATGTTATTTTAAATGAGACAATAT
Found at i:25527162 original size:217 final size:217
Alignment explanation
Indices: 25526787--25527218 Score: 749
Period size: 217 Copynumber: 2.0 Consensus size: 217
25526777 CACCCCATAG
* *
25526787 TCGCATGTCCTATTTCTCAAGTGTACACGATATTGCCCACAGATAATACCTTGGTTCGGTCTGTC
1 TCGCATGTCCTATTTCTCAAGCGTACACGATATTGCCCACAGATAATACCTTGGTTCGGTCTATC
* *
25526852 AAACTCTGTAACACAAAACCATAGGTTATCGCGATCGTGACACACTATGTGCATGGTGTTGGCTC
66 AAACTCCGTAACACAAAACCATAGGTTATCGCGATCATGACACACTATGTGCATGGTGTTGGCTC
* * **
25526917 GTACCTTCGCCTTGTTAATCTCTCGCAATACCTTCGCGTACCATACATGGCCTCTTTGCATTTGG
131 ATACCTTCGCCTTGTTAATCTCTCGCAATACCTTCGCGCACCATACATGGCCTCCCTGCATTTGG
25526982 CCTTTATAACTCGCTGCTCATT
196 CCTTTATAACTCGCTGCTCATT
*
25527004 TCGCATGTTCTATTTCTCAAGCGTACACGATATTGCCCACCA-ATAATACCTTGGTTCGGTCTAT
1 TCGCATGTCCTATTTCTCAAGCGTACACGATATTGCCCA-CAGATAATACCTTGGTTCGGTCTAT
* *
25527068 CAAACTCCGTAACACGAAACCATAGGTTGTCGCGATCATGACACACTATGTGCATGGTGTTGGCT
65 CAAACTCCGTAACACAAAACCATAGGTTATCGCGATCATGACACACTATGTGCATGGTGTTGGCT
25527133 CATACCTTCGCCTTGTTAATCTCTCGCAATACCTTCGCGCACCATACATGGCCTCCCTGCATTTG
130 CATACCTTCGCCTTGTTAATCTCTCGCAATACCTTCGCGCACCATACATGGCCTCCCTGCATTTG
25527198 GCCTTTATAACTCGCTGCTCA
195 GCCTTTATAACTCGCTGCTCA
25527219 CTTTGGAAAT
Statistics
Matches: 203, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
217 201 0.99
218 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.31
Consensus pattern (217 bp):
TCGCATGTCCTATTTCTCAAGCGTACACGATATTGCCCACAGATAATACCTTGGTTCGGTCTATC
AAACTCCGTAACACAAAACCATAGGTTATCGCGATCATGACACACTATGTGCATGGTGTTGGCTC
ATACCTTCGCCTTGTTAATCTCTCGCAATACCTTCGCGCACCATACATGGCCTCCCTGCATTTGG
CCTTTATAACTCGCTGCTCATT
Found at i:25529864 original size:125 final size:125
Alignment explanation
Indices: 25529642--25529949 Score: 501
Period size: 125 Copynumber: 2.4 Consensus size: 125
25529632 AGTCTAAGGC
* * *
25529642 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCTACGTGGGAG-TTTGTTTCCATAATTTTGCTGA
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTT-TTT-CGTAATTTTGCTAA
* * *
25529706 CAGTGCATCCTTCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAATTTAT
64 CACTGCATCCTTATTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
*
25529768 TTTTTCAGATACTACTGTAGCAAAAGAACGTCCACGTGGGAGCTTTTTTCGTAATTTTGCTAACA
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCGTAATTTTGCTAACA
25529833 CTGCATCCTTATTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
66 CTGCATCCTTATTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
* *
25529893 TTTTTCAGATACTACTATAGCAAAAGAGCGTCCACGTGAGAGCTTTTTTTCGTAATT
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGC-TTTTTTCGTAATT
25529950 AATAGTTAAT
Statistics
Matches: 170, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
125 111 0.65
126 56 0.33
127 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.39
Consensus pattern (125 bp):
TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCGTAATTTTGCTAACA
CTGCATCCTTATTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
Found at i:25530097 original size:24 final size:24
Alignment explanation
Indices: 25530070--25530116 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
25530060 ATTTTTTTCT
25530070 TAAAAATACTAAAACC-TTAAACCC
1 TAAAAA-ACTAAAACCATTAAACCC
* *
25530094 TAAAAACCTTAAACCATTAAACC
1 TAAAAAACTAAAACCATTAAACC
25530117 ATAACCATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.53, C:0.26, G:0.00, T:0.21
Consensus pattern (24 bp):
TAAAAAACTAAAACCATTAAACCC
Found at i:25533622 original size:15 final size:15
Alignment explanation
Indices: 25533602--25533653 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
25533592 GTATTACACA
25533602 CTAAAACCCTAAACT
1 CTAAAACCCTAAACT
25533617 CTAAAAACCCTAAAC-
1 CT-AAAACCCTAAACT
* *
25533632 CATTAAACCCTAACCT
1 C-TAAAACCCTAAACT
25533648 -TAAAAC
1 CTAAAAC
25533654 AATAAAAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 5 0.16
15 13 0.42
16 13 0.42
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (15 bp):
CTAAAACCCTAAACT
Found at i:25533663 original size:24 final size:23
Alignment explanation
Indices: 25533636--25533691 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 23
25533626 CTAAACCATT
*
25533636 AAACCCTAACCTTAAAACAATAAA
1 AAACCCTAACCCTAAAA-AATAAA
* * *
25533660 AAACTCTAACCCTAAAAAATCAT
1 AAACCCTAACCCTAAAAAATAAA
25533683 AAACCCTAA
1 AAACCCTAA
25533692 TTTAATTATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 12 0.44
24 15 0.56
ACGTcount: A:0.55, C:0.27, G:0.00, T:0.18
Consensus pattern (23 bp):
AAACCCTAACCCTAAAAAATAAA
Found at i:25550252 original size:90 final size:91
Alignment explanation
Indices: 25550089--25550253 Score: 226
Period size: 90 Copynumber: 1.8 Consensus size: 91
25550079 AATTAAGCTC
** * * *
25550089 CTTTTTTTTTGTACTCATTTGGGTATTCTGAACTTTTAAAATGCATAAAAAAAACCTTCAAACCT
1 CTTTTTTTTTACACTCAATTGGGTATTCTGAACTTTCAAAATGCATAAAAAAAACCCTCAAACCT
**
25550154 TTTCAAAAAAAGCAATTAAGCCACTA
66 TTAAAAAAAAAGCAATTAAGCCACTA
* * *
25550180 CTTTTTTTTTACACTCAATTGGGTATT-TGAACTTTCAAAATTCATCAAAAAGACCCTCAAA-CT
1 CTTTTTTTTTACACTCAATTGGGTATTCTGAACTTTCAAAATGCATAAAAAAAACCCTCAAACCT
25550243 TTAAAAAAAAA
66 TTAAAAAAAAA
25550254 TTAAGCTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
89 11 0.17
90 29 0.45
91 24 0.38
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.36
Consensus pattern (91 bp):
CTTTTTTTTTACACTCAATTGGGTATTCTGAACTTTCAAAATGCATAAAAAAAACCCTCAAACCT
TTAAAAAAAAAGCAATTAAGCCACTA
Found at i:25550376 original size:20 final size:19
Alignment explanation
Indices: 25550348--25550406 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
25550338 TAAAAATTTC
*
25550348 AAATATTAAAAAGTAGAAAA
1 AAATTTTAAAAA-TAGAAAA
* * *
25550368 AAATTTTAAAAATATATAG
1 AAATTTTAAAAATAGAAAA
*
25550387 AAATTTTAAAAATATAAAA
1 AAATTTTAAAAATAGAAAA
25550406 A
1 A
25550407 TTGCAAATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 22 0.67
20 11 0.33
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
AAATTTTAAAAATAGAAAA
Found at i:25550438 original size:47 final size:47
Alignment explanation
Indices: 25550366--25550497 Score: 128
Period size: 46 Copynumber: 2.9 Consensus size: 47
25550356 AAAAGTAGAA
* * * *
25550366 AAAAATTT-TAAAAATA-TATAGAAATTTTAAAAATATAAAAATTGC
1 AAAATTTTATAAAAATAGTAAAAAAATTTTAAAAATATAAAAATTAC
* * * *
25550411 AAATTTTTATAAAAATAGTAAAAAAATTATAAAATTAT-AAAATTAT
1 AAAATTTTATAAAAATAGTAAAAAAATTTTAAAAATATAAAAATTAC
* * *
25550457 AAAATTTTAT-AAAATTGTAAGAAAATTTTACAAAATGTAAA
1 AAAATTTTATAAAAATAGTAAAAAAATTTTA-AAAATATAAA
25550498 GAAATATAAA
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
45 23 0.33
46 28 0.41
47 18 0.26
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.35
Consensus pattern (47 bp):
AAAATTTTATAAAAATAGTAAAAAAATTTTAAAAATATAAAAATTAC
Found at i:25550444 original size:8 final size:8
Alignment explanation
Indices: 25550433--25550472 Score: 62
Period size: 8 Copynumber: 4.8 Consensus size: 8
25550423 AAATAGTAAA
25550433 AAAATTAT
1 AAAATTAT
25550441 AAAATTAT
1 AAAATTAT
25550449 AAAATTAT
1 AAAATTAT
25550457 AAAATTTTAT
1 AAAA--TTAT
25550467 AAAATT
1 AAAATT
25550473 GTAAGAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 22 0.73
10 8 0.27
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
AAAATTAT
Found at i:25550502 original size:20 final size:21
Alignment explanation
Indices: 25550457--25550501 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
25550447 ATAAAATTAT
*
25550457 AAAATTTTATAAAATTGTAAG
1 AAAATTTTACAAAATTGTAAG
25550478 AAAATTTTACAAAA-TGTAAAG
1 AAAATTTTACAAAATTGT-AAG
25550499 AAA
1 AAA
25550502 TATAAATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (21 bp):
AAAATTTTACAAAATTGTAAG
Found at i:25550777 original size:20 final size:20
Alignment explanation
Indices: 25550739--25550776 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25550729 TAATAAAAAT
*
25550739 TTAAAATTTTTATATTTTTA
1 TTAAAATTTATATATTTTTA
25550759 TTAAAATTTATAT-TTTTT
1 TTAAAATTTATATATTTTT
25550777 TTCTAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TTAAAATTTATATATTTTTA
Found at i:25554339 original size:2 final size:2
Alignment explanation
Indices: 25554334--25554360 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
25554324 TCGATTTCTT
25554334 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
25554361 TTTTAAGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:25555697 original size:17 final size:17
Alignment explanation
Indices: 25555675--25555710 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
25555665 CGTTGCCTAC
25555675 AATCAGTCTAGATTTAG
1 AATCAGTCTAGATTTAG
25555692 AATCAGTCTAGATTTAG
1 AATCAGTCTAGATTTAG
25555709 AA
1 AA
25555711 AAATGATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (17 bp):
AATCAGTCTAGATTTAG
Found at i:25555807 original size:20 final size:21
Alignment explanation
Indices: 25555782--25555829 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
25555772 ACATCAGTAT
25555782 TTTTATTC-TGAATTTTAAGA
1 TTTTATTCTTGAATTTTAAGA
*
25555802 TTTTA-TCTTGAATTTTAGGA
1 TTTTATTCTTGAATTTTAAGA
25555822 TTTTATTC
1 TTTTATTC
25555830 GGAAAAAGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.84
21 2 0.08
ACGTcount: A:0.25, C:0.06, G:0.10, T:0.58
Consensus pattern (21 bp):
TTTTATTCTTGAATTTTAAGA
Found at i:25556241 original size:55 final size:54
Alignment explanation
Indices: 25556171--25556275 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 54
25556161 ACATATTTAG
* * * * *
25556171 CCTCAATATTTACAAAGTTTTTCATTTTAGTT-TGAATTCTAAAAATAAATTTAAC
1 CCTCAAAATTTACAAAATTTGTCACTTTAATTCT-AATTCTAAAAA-AAATTTAAC
25556226 CCTCAAAATTTACAAAATTTGTCACTTTAATTCTAATTCTAAAAAAAATT
1 CCTCAAAATTTACAAAATTTGTCACTTTAATTCTAATTCTAAAAAAAATT
25556276 CAACAAATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
54 5 0.11
55 38 0.86
56 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.04, T:0.41
Consensus pattern (54 bp):
CCTCAAAATTTACAAAATTTGTCACTTTAATTCTAATTCTAAAAAAAATTTAAC
Found at i:25557790 original size:30 final size:31
Alignment explanation
Indices: 25557731--25557794 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
25557721 ATTTAACAAT
25557731 CAAATGCTTCTAAAATAATAATAAAAATTAA
1 CAAATGCTTCTAAAATAATAATAAAAATTAA
*
25557762 CAAATGCATT-TAAAATAATAA-CAAAATTAA
1 CAAATGC-TTCTAAAATAATAATAAAAATTAA
25557792 CAA
1 CAA
25557795 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 11 0.35
31 18 0.58
32 2 0.06
ACGTcount: A:0.59, C:0.11, G:0.03, T:0.27
Consensus pattern (31 bp):
CAAATGCTTCTAAAATAATAATAAAAATTAA
Found at i:25559026 original size:5 final size:5
Alignment explanation
Indices: 25558977--25559090 Score: 79
Period size: 5 Copynumber: 22.8 Consensus size: 5
25558967 ACAAACCCAT
* * * * *
25558977 CAGAA CA-AGA CAGAG CAGAA CAAAA CA-AA GCAAAA CTGAA TAGAA CAGAA
1 CAGAA CAGA-A CAGAA CAGAA CAGAA CAGAA -CAGAA CAGAA CAGAA CAGAA
* * * * * * *
25559027 TAGAG CAGAG CAGAG CAGAG CAGAA CAGAA TAGAG CAGAA CAGAA CAGAA
1 CAGAA CAGAA CAGAA CAGAA CAGAA CAGAA CAGAA CAGAA CAGAA CAGAA
*
25559077 CAGAA CAGAG CAGA
1 CAGAA CAGAA CAGA
25559091 GAAGAGCAGA
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
4 3 0.03
5 82 0.93
6 3 0.03
ACGTcount: A:0.54, C:0.18, G:0.25, T:0.04
Consensus pattern (5 bp):
CAGAA
Found at i:25559046 original size:15 final size:15
Alignment explanation
Indices: 25559018--25559101 Score: 96
Period size: 15 Copynumber: 5.6 Consensus size: 15
25559008 AAAACTGAAT
*
25559018 AGAACAGAATAGAGC
1 AGAACAGAACAGAGC
* *
25559033 AGAGCAGAGCAGAGC
1 AGAACAGAACAGAGC
*
25559048 AGAACAGAATAGAGC
1 AGAACAGAACAGAGC
*
25559063 AGAACAGAACAGAAC
1 AGAACAGAACAGAGC
* *
25559078 AGAACAGAGCAGAGA
1 AGAACAGAACAGAGC
*
25559093 AGAGCAGAA
1 AGAACAGAA
25559102 TGGAATAAAG
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 56 1.00
ACGTcount: A:0.52, C:0.15, G:0.30, T:0.02
Consensus pattern (15 bp):
AGAACAGAACAGAGC
Found at i:25559091 original size:5 final size:5
Alignment explanation
Indices: 25559028--25559100 Score: 74
Period size: 5 Copynumber: 14.6 Consensus size: 5
25559018 AGAACAGAAT
* ** * * *
25559028 AGAGC AGAGC AGAGC AGAGC AGAAC AGAAT AGAGC AGAAC AGAAC AGAAC
1 AGAGC AGAGC AGAGC AGAGC AGAGC AGAGC AGAGC AGAGC AGAGC AGAGC
* *
25559078 AGAAC AGAGC AGAGA AGAGC AGA
1 AGAGC AGAGC AGAGC AGAGC AGA
25559101 ATGGAATAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 60 1.00
ACGTcount: A:0.51, C:0.16, G:0.32, T:0.01
Consensus pattern (5 bp):
AGAGC
Found at i:25562559 original size:2 final size:2
Alignment explanation
Indices: 25562552--25562576 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
25562542 TTGTTGCCAT
25562552 CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA C
25562577 TCATGATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:25565263 original size:25 final size:26
Alignment explanation
Indices: 25565226--25565276 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
25565216 GTTGTAAATC
*
25565226 AGAAAAATATCTTTAGA-AATTTTCT
1 AGAAAAATATCTTCAGAGAATTTTCT
* *
25565251 AGAATAATCTCTTCAGAGAATTTTCT
1 AGAAAAATATCTTCAGAGAATTTTCT
25565277 CTCTACAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (26 bp):
AGAAAAATATCTTCAGAGAATTTTCT
Found at i:25565488 original size:62 final size:59
Alignment explanation
Indices: 25565385--25565501 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 59
25565375 ATTACTTTAA
* * *
25565385 TATTAAATTAATATAATATTTATTAAGATAAATATTAAATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTATTAAGATAAATAGTAAATTAAATTTAATATTAAATCT
*
25565444 TATTAAAATAATAGAATTTTTATCTACAAGATAAATAGTAAATTAAATTTAATATTAA
1 TATTAAAATAATAGAATATTTAT-T--AAGATAAATAGTAAATTAAATTTAATATTAA
25565502 TATAAACATT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 20 0.39
60 1 0.02
62 30 0.59
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (59 bp):
TATTAAAATAATAGAATATTTATTAAGATAAATAGTAAATTAAATTTAATATTAAATCT
Found at i:25565574 original size:37 final size:36
Alignment explanation
Indices: 25565482--25565587 Score: 109
Period size: 37 Copynumber: 3.1 Consensus size: 36
25565472 AGATAAATAG
*
25565482 TAAATTAAATTTAATATT-AA-TA-T-AAA-CATTT
1 TAAATTAAATTTAATATTAAACTATTAAAATAATTT
* *
25565513 TAATGTTAAA-TTAATA-AAATACTATTAAAATAATTAT
1 TAA-ATTAAATTTAATATTAA-ACTATTAAAATAATT-T
25565550 TAAATTAAATTTAATATTAAACTATTAAAATAATTT
1 TAAATTAAATTTAATATTAAACTATTAAAATAATTT
25565586 TA
1 TA
25565588 TTTTTGGAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
31 10 0.17
32 6 0.10
33 2 0.03
34 1 0.02
35 3 0.05
36 11 0.18
37 25 0.42
38 2 0.03
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (36 bp):
TAAATTAAATTTAATATTAAACTATTAAAATAATTT
Found at i:25565687 original size:37 final size:36
Alignment explanation
Indices: 25565636--25565711 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
25565626 ATTCTAAAAA
*
25565636 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
*
25565672 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
25565709 TAA
1 TAA
25565712 AGTAATTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:25565797 original size:62 final size:59
Alignment explanation
Indices: 25565724--25565837 Score: 156
Period size: 62 Copynumber: 1.9 Consensus size: 59
25565714 TAATTATCTT
* * * *
25565724 ATATTAAATTTAATTTAATGTTTATCTACAAGATAAATATTCTATTATTTTAATAAGATTTA
1 ATATTAAATTTAATCTAATATTTATCT---AGATAAATATTATATTAATTTAATAAGATTTA
*
25565786 ATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 ATATTAAATTTAATCTAATATTTATCTAGATAAATATTATATTAATTTAATA
25565838 TTAAAGTGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
59 22 0.47
62 25 0.53
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (59 bp):
ATATTAAATTTAATCTAATATTTATCTAGATAAATATTATATTAATTTAATAAGATTTA
Found at i:25574007 original size:34 final size:34
Alignment explanation
Indices: 25573964--25574033 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
25573954 TTCTCTTGAA
25573964 TTAAAGTGTGTGTAAATAATGACCCAAGACTGTC
1 TTAAAGTGTGTGTAAATAATGACCCAAGACTGTC
* *
25573998 TTAAAGTGTGTGTAAATAATGACTCAATACTGTC
1 TTAAAGTGTGTGTAAATAATGACCCAAGACTGTC
25574032 TT
1 TT
25574034 TATATAGAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (34 bp):
TTAAAGTGTGTGTAAATAATGACCCAAGACTGTC
Found at i:25574582 original size:19 final size:17
Alignment explanation
Indices: 25574558--25574598 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
25574548 AAAAACAAAG
*
25574558 AAATTGGGAATAAGAGGTA
1 AAATTGGAAATAA-AGG-A
25574577 AAATTGGAAATAAAGGA
1 AAATTGGAAATAAAGGA
25574594 AAATT
1 AAATT
25574599 TAATAAGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.29
18 3 0.14
19 12 0.57
ACGTcount: A:0.54, C:0.00, G:0.24, T:0.22
Consensus pattern (17 bp):
AAATTGGAAATAAAGGA
Found at i:25575690 original size:75 final size:75
Alignment explanation
Indices: 25575537--25575690 Score: 195
Period size: 75 Copynumber: 2.1 Consensus size: 75
25575527 GTTATATATG
* * * **
25575537 TGTGCAAGTGTAAGACCATAGTTAAGCTATGATAATGTGATTAGTGTGTGATCATGGCAAGGCCA
1 TGTGCAAGTGCAAGACCATAATTAAGCTATGACAATGTGAAAAGTGTGTGATCATGGCAAGGCCA
*
25575602 TGGTAAAATA
66 TGATAAAATA
* * *
25575612 TGTGCAAGTGCAAGACCATAATTAAGTTGTGGCAATGTGACAAAGTGTGTGATCATGGCTAA-GC
1 TGTGCAAGTGCAAGACCATAATTAAGCTATGACAATGTGA-AAAGTGTGTGATCATGGC-AAGGC
25575676 CATGATAAAA-A
64 CATGATAAAATA
25575687 TGTG
1 TGTG
25575691 TACAAAACCA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
75 39 0.57
76 27 0.40
77 2 0.03
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.28
Consensus pattern (75 bp):
TGTGCAAGTGCAAGACCATAATTAAGCTATGACAATGTGAAAAGTGTGTGATCATGGCAAGGCCA
TGATAAAATA
Found at i:25581600 original size:48 final size:48
Alignment explanation
Indices: 25581510--25581604 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
25581500 GCTCAATATT
* * *
25581510 AGTCAATATTTTTCAATATCAATTAATTTATCAATATCATTCAGTAAC
1 AGTCAATATTTTTCAATAGCAATCAATTGATCAATATCATTCAGTAAC
* ** *
25581558 AGTCAATATTTTTCAATAGCGATCAATTGATCTTTATTATTCAGTAA
1 AGTCAATATTTTTCAATAGCAATCAATTGATCAATATCATTCAGTAA
25581605 TAGTTAACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.37, C:0.14, G:0.07, T:0.42
Consensus pattern (48 bp):
AGTCAATATTTTTCAATAGCAATCAATTGATCAATATCATTCAGTAAC
Found at i:25586921 original size:24 final size:24
Alignment explanation
Indices: 25586889--25586939 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
25586879 TCGTGAATCT
*
25586889 TAATTCTCAAGACTCTATACAAAC
1 TAATTCTCAAGACTCCATACAAAC
25586913 TAATTCTCAAGACTCCATACAAAC
1 TAATTCTCAAGACTCCATACAAAC
25586937 TAA
1 TAA
25586940 CGATCGTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.43, C:0.25, G:0.04, T:0.27
Consensus pattern (24 bp):
TAATTCTCAAGACTCCATACAAAC
Found at i:25589359 original size:12 final size:13
Alignment explanation
Indices: 25589344--25589377 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
25589334 TTTTCAAATT
*
25589344 AATTTTTTAAT-A
1 AATTCTTTAATCA
25589356 AATTCTTTAATCA
1 AATTCTTTAATCA
25589369 AATTCTTTA
1 AATTCTTTA
25589378 GTTAAACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (13 bp):
AATTCTTTAATCA
Found at i:25593646 original size:30 final size:31
Alignment explanation
Indices: 25593610--25593693 Score: 127
Period size: 30 Copynumber: 2.8 Consensus size: 31
25593600 TTTTTATTTA
25593610 AAAATAATAGGAAATTATTAAAAAGT-GTTT
1 AAAATAATAGGAAATTATTAAAAAGTAGTTT
* * *
25593640 AAAATAATAGGAATTTCTTAAAAAGTATTTT
1 AAAATAATAGGAAATTATTAAAAAGTAGTTT
25593671 AAAA-AATAGGAAATTATTAAAAA
1 AAAATAATAGGAAATTATTAAAAA
25593694 TTAAAAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 41 0.85
31 7 0.15
ACGTcount: A:0.56, C:0.01, G:0.11, T:0.32
Consensus pattern (31 bp):
AAAATAATAGGAAATTATTAAAAAGTAGTTT
Found at i:25608963 original size:5 final size:5
Alignment explanation
Indices: 25608953--25608982 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
25608943 ACTGATAGCC
25608953 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
25608983 TATAGGAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:25612582 original size:33 final size:33
Alignment explanation
Indices: 25612544--25612650 Score: 119
Period size: 33 Copynumber: 3.3 Consensus size: 33
25612534 ATGATACAAT
**
25612544 TTGAAAAGGTTAGGTATACTTTGTGTATACCA-
1 TTGAAAAGGAAAGGTATACTTTGTGTATACCAC
* *
25612576 TATGAAAAGGAAATGTATGCTTTGTGTATACCAC
1 T-TGAAAAGGAAAGGTATACTTTGTGTATACCAC
* * * *
25612610 TTGAAAAGGAAAGGTACACTATATGTGTA-CAC
1 TTGAAAAGGAAAGGTATACTTTGTGTATACCAC
25612642 TTGAAAAGG
1 TTGAAAAGG
25612651 CTATGTGCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
32 13 0.21
33 49 0.78
34 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.31
Consensus pattern (33 bp):
TTGAAAAGGAAAGGTATACTTTGTGTATACCAC
Found at i:25612669 original size:32 final size:32
Alignment explanation
Indices: 25612561--25612749 Score: 119
Period size: 33 Copynumber: 5.8 Consensus size: 32
25612551 GGTTAGGTAT
* * *
25612561 ACTTTGTGTATAC-CATATGAAAAGGAAATGTAT
1 ACTTTGTGTGTACAC-T-TGAAAAGGGAATGTAC
* * * *
25612594 GCTTTGTGTATACCACTTGAAAAGGAAAGGTAC
1 ACTTTGTGTGTA-CACTTGAAAAGGGAATGTAC
* * ** *
25612627 ACTATATGTGTACACTTGAAAAGGCTATGTGC
1 ACTTTGTGTGTACACTTGAAAAGGGAATGTAC
* *
25612659 ACTTTGTGTGTACAAATTGAAAAGGGTATGTAC
1 ACTTTGTGTGTAC-ACTTGAAAAGGGAATGTAC
* * * *
25612692 ACTTCGTGTGTACCATTTGAAAGGGGAATGTGC
1 ACTTTGTGTGTA-CACTTGAAAAGGGAATGTAC
* * * *
25612725 ACCTCGGGTGTACAACTAGAAAAGG
1 ACTTTGTGTGTAC-ACTTGAAAAGG
25612750 AAAGGTCTAT
Statistics
Matches: 125, Mismatches: 26, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
32 28 0.22
33 93 0.74
34 3 0.02
35 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (32 bp):
ACTTTGTGTGTACACTTGAAAAGGGAATGTAC
Found at i:25612682 original size:33 final size:33
Alignment explanation
Indices: 25612633--25612749 Score: 128
Period size: 33 Copynumber: 3.6 Consensus size: 33
25612623 GTACACTATA
* *
25612633 TGTGTAC-ACTTGAAAAGGCTATGTGCACTTTG
1 TGTGTACAACTTGAAAAGGGTATGTGCACTTCG
* *
25612665 TGTGTACAAATTGAAAAGGGTATGTACACTTCG
1 TGTGTACAACTTGAAAAGGGTATGTGCACTTCG
* * * * *
25612698 TGTGTACCATTTGAAAGGGGAATGTGCACCTCG
1 TGTGTACAACTTGAAAAGGGTATGTGCACTTCG
* *
25612731 GGTGTACAACTAGAAAAGG
1 TGTGTACAACTTGAAAAGG
25612750 AAAGGTCTAT
Statistics
Matches: 69, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
32 7 0.10
33 62 0.90
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (33 bp):
TGTGTACAACTTGAAAAGGGTATGTGCACTTCG
Found at i:25618739 original size:13 final size:13
Alignment explanation
Indices: 25618721--25618747 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
25618711 GGAATATTGC
25618721 TTGAAAATTTTTA
1 TTGAAAATTTTTA
25618734 TTGAAAATTTTTA
1 TTGAAAATTTTTA
25618747 T
1 T
25618748 CAATTATGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (13 bp):
TTGAAAATTTTTA
Found at i:25619765 original size:32 final size:27
Alignment explanation
Indices: 25619695--25619749 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
25619685 TTGTAATTGG
25619695 TATGTACATGTAATAAATCAACCTTGA
1 TATGTACATGTAATAAATCAACCTTGA
*
25619722 TATGTACATGTAATAAATCAATCTTGA
1 TATGTACATGTAATAAATCAACCTTGA
25619749 T
1 T
25619750 TTGTGATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (27 bp):
TATGTACATGTAATAAATCAACCTTGA
Found at i:25619998 original size:33 final size:33
Alignment explanation
Indices: 25619960--25620034 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
25619950 ATGGTACAAT
**
25619960 TTGAAAAGGTTAGGTATACTTTGTGTATACCA-
1 TTGAAAAGGAAAGGTATACTTTGTGTATACCAC
*
25619992 TATGAAAAAGAAAGGTATACTTTGTGTATACCAC
1 T-TGAAAAGGAAAGGTATACTTTGTGTATACCAC
25620026 TTGAAAAGG
1 TTGAAAAGG
25620035 CTATGTGCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 1 0.03
33 35 0.95
34 1 0.03
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.32
Consensus pattern (33 bp):
TTGAAAAGGAAAGGTATACTTTGTGTATACCAC
Found at i:25620047 original size:33 final size:33
Alignment explanation
Indices: 25620010--25620133 Score: 122
Period size: 33 Copynumber: 3.8 Consensus size: 33
25620000 AGAAAGGTAT
* *
25620010 ACTTTGTGTATACCACTTGAAAAGGCTATGTGC
1 ACTTTGTGTGTACCACTTGAAAAGGGTATGTGC
* * * **
25620043 ACTTTGTGTGTTCAAATTGAAAAGGGTATGTAA
1 ACTTTGTGTGTACCACTTGAAAAGGGTATGTGC
* *
25620076 AATTTGTGTGTACCACTTGAAAAGGGAATGTGC
1 ACTTTGTGTGTACCACTTGAAAAGGGTATGTGC
* * * * *
25620109 ACCTCGGGTGTACAACTAGAAAAGG
1 ACTTTGTGTGTACCACTTGAAAAGG
25620134 AAAGGTCTAT
Statistics
Matches: 71, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (33 bp):
ACTTTGTGTGTACCACTTGAAAAGGGTATGTGC
Found at i:25628669 original size:32 final size:31
Alignment explanation
Indices: 25628595--25628684 Score: 92
Period size: 32 Copynumber: 2.8 Consensus size: 31
25628585 TAAACGCGTG
* *
25628595 ATTTTGTGAAATAATAACAAATATTAGCTTTC
1 ATTTTGTGAAAT-ATAACAAATACTAGCTTTA
* * *
25628627 TTTTTTTGAAATATTAACAAATTACTA-TTTTA
1 ATTTTGTGAAATA-TAACAAA-TACTAGCTTTA
25628659 ATTTTGTGAAATGATAACAAATACTA
1 ATTTTGTGAAAT-ATAACAAATACTA
25628685 ACTTGGTATG
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
31 6 0.12
32 37 0.77
33 5 0.10
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (31 bp):
ATTTTGTGAAATATAACAAATACTAGCTTTA
Found at i:25628750 original size:18 final size:18
Alignment explanation
Indices: 25628724--25628761 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
25628714 AAAACATAAT
25628724 AATAAAAAT-TATCGATAC
1 AATAAAAATGT-TCGATAC
*
25628742 AATATAAATGTTCGATAC
1 AATAAAAATGTTCGATAC
25628760 AA
1 AA
25628762 CGATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.29
Consensus pattern (18 bp):
AATAAAAATGTTCGATAC
Found at i:25637075 original size:47 final size:47
Alignment explanation
Indices: 25636986--25637080 Score: 127
Period size: 47 Copynumber: 2.0 Consensus size: 47
25636976 GACAAAACCT
** **
25636986 TGAATGTCCCCTACAACCATGTTACGTTCACCCGTATGCCTTCAATA
1 TGAATGTCCCCTACAACCATGTTACGTTCACCCACACACCTTCAATA
** *
25637033 TGAATGTCCCCTACAACCATGTTATTTTTACCCACACACCTTCAATA
1 TGAATGTCCCCTACAACCATGTTACGTTCACCCACACACCTTCAATA
25637080 T
1 T
25637081 CTTTTTTCTT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.32
Consensus pattern (47 bp):
TGAATGTCCCCTACAACCATGTTACGTTCACCCACACACCTTCAATA
Found at i:25637783 original size:18 final size:18
Alignment explanation
Indices: 25637736--25637796 Score: 70
Period size: 19 Copynumber: 3.4 Consensus size: 18
25637726 TAAAAAAACT
*
25637736 AAAAATAGAAAATCATAA
1 AAAAATAGAATATCATAA
25637754 AAAAATATGAATATCATAA
1 AAAAATA-GAATATCATAA
** *
25637773 AAATGTAGAAT-TTATAA
1 AAAAATAGAATATCATAA
25637790 AAAAATA
1 AAAAATA
25637797 TAAATTTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
17 10 0.28
18 11 0.31
19 15 0.42
ACGTcount: A:0.66, C:0.03, G:0.07, T:0.25
Consensus pattern (18 bp):
AAAAATAGAATATCATAA
Found at i:25637802 original size:18 final size:18
Alignment explanation
Indices: 25637736--25637813 Score: 61
Period size: 19 Copynumber: 4.3 Consensus size: 18
25637726 TAAAAAAACT
* * *
25637736 AAAAATAGAAAATCATAA
1 AAAAATATAAATTTATAA
* *
25637754 AAAAATATGAA--TATCAT
1 AAAAATATAAATTTAT-AA
*
25637771 AAAAATGTAGAATTTATAA
1 AAAAATATA-AATTTATAA
25637790 AAAAATATAAATTTTATAA
1 AAAAATATAAA-TTTATAA
25637809 AAAAA
1 AAAAA
25637814 ATTACTAAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
16 2 0.04
17 8 0.17
18 13 0.28
19 21 0.45
20 3 0.06
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAAATATAAATTTATAA
Found at i:25637810 original size:17 final size:17
Alignment explanation
Indices: 25637754--25637811 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
25637744 AAAATCATAA
* * *
25637754 AAAAATATGAATATCAT
1 AAAAATATAAATTTTAT
* *
25637771 AAAAATGTAGAATTTATAA
1 AAAAATATA-AATTT-TAT
25637790 AAAAATATAAATTTTAT
1 AAAAATATAAATTTTAT
25637807 AAAAA
1 AAAAA
25637812 AAATTACTAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 14 0.44
18 9 0.28
19 9 0.28
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (17 bp):
AAAAATATAAATTTTAT
Found at i:25638131 original size:21 final size:21
Alignment explanation
Indices: 25638096--25638139 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
25638086 ATATATTTAA
**
25638096 TTTTTTATAGGTTTCCT-ATAT
1 TTTTTTATAAATTT-CTAATAT
25638117 TTTTTTATAAATTTCTAATAT
1 TTTTTTATAAATTTCTAATAT
25638138 TT
1 TT
25638140 AATATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.25, C:0.07, G:0.05, T:0.64
Consensus pattern (21 bp):
TTTTTTATAAATTTCTAATAT
Found at i:25639738 original size:2 final size:2
Alignment explanation
Indices: 25639731--25639756 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25639721 CTATAATCTA
25639731 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25639757 GAAGTATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25650009 original size:17 final size:17
Alignment explanation
Indices: 25649987--25650036 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
25649977 ATATTTTTCC
25649987 TTTCTTTTTTCTTACTT
1 TTTCTTTTTTCTTACTT
* *
25650004 TTTCTTTTTTTCGGTCCTT
1 TTTC-TTTTTTC-TTACTT
25650023 TTTCTTTTCTTCTT
1 TTTCTTTT-TTCTT
25650037 TAATTGTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
17 4 0.15
18 12 0.44
19 11 0.41
ACGTcount: A:0.02, C:0.20, G:0.04, T:0.74
Consensus pattern (17 bp):
TTTCTTTTTTCTTACTT
Found at i:25652868 original size:19 final size:19
Alignment explanation
Indices: 25652844--25652941 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
25652834 AATCTTTAAG
25652844 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
25652863 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
25652882 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
25652899 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
25652918 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
25652939 GAT
1 GAT
25652942 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:25652891 original size:36 final size:37
Alignment explanation
Indices: 25652844--25652941 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
25652834 AATCTTTAAG
25652844 GATATGCAATCTTAGATATGATATGCAATATTAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATATTAGATAT
*
25652882 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATATTAGATAT
25652918 GATATGCAATCTTGAAGATATGAT
1 GATA-GCAATCTT--AGATATGAT
25652942 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
40 9 0.16
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATATTAGATAT
Found at i:25653475 original size:25 final size:25
Alignment explanation
Indices: 25653447--25653495 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
25653437 GTGCATAGTT
25653447 TCATTT-TTTTATATGCTATGTTTAA
1 TCATTTCTTTTATATGCTAT-TTTAA
*
25653472 TCATTTCTTTTATGTGCTATTTTA
1 TCATTTCTTTTATATGCTATTTTA
25653496 TGATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.20, C:0.10, G:0.08, T:0.61
Consensus pattern (25 bp):
TCATTTCTTTTATATGCTATTTTAA
Found at i:25665087 original size:21 final size:21
Alignment explanation
Indices: 25665063--25665103 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
25665053 AACCGTATCG
*
25665063 GAATAGGTAAGGGCGTCACCA
1 GAATAGGTAAGGGCATCACCA
25665084 GAATAGGTAAGGGCATCACC
1 GAATAGGTAAGGGCATCACC
25665104 GGACGGACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.20, G:0.32, T:0.15
Consensus pattern (21 bp):
GAATAGGTAAGGGCATCACCA
Found at i:25666295 original size:42 final size:42
Alignment explanation
Indices: 25666239--25666345 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 42
25666229 AATGCCTCAA
* *
25666239 TCCCAGACAGGGTCTTACACGAAATC-AAATATGATGCC-GATG
1 TCCCAGACACGGTCTTACACGAAATCTAAAT-TGAAGCCTG-TG
* * * * *
25666281 TCCTAGACATGGTCTTATACTTAAATCTCAATTGAAGCCTGTG
1 TCCCAGACACGGTCTTACAC-GAAATCTAAATTGAAGCCTGTG
25666324 TCCCAGACACGGTCTTACACGA
1 TCCCAGACACGGTCTTACACGA
25666346 TGTCTCAGAC
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
42 18 0.35
43 30 0.58
44 4 0.08
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
TCCCAGACACGGTCTTACACGAAATCTAAATTGAAGCCTGTG
Found at i:25675256 original size:42 final size:42
Alignment explanation
Indices: 25675204--25675288 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
25675194 GCTCTCTTCT
*
25675204 ACTCCATACGCACAATAGATATAAAATCTGCTAGAATAGATG
1 ACTCCATACGCACAACAGATATAAAATCTGCTAGAATAGATG
* * * *
25675246 ACTCTATACGCACAGCAGATATAAGATGTGCTAGAATAGATG
1 ACTCCATACGCACAACAGATATAAAATCTGCTAGAATAGATG
25675288 A
1 A
25675289 TGACTAGAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (42 bp):
ACTCCATACGCACAACAGATATAAAATCTGCTAGAATAGATG
Found at i:25675297 original size:16 final size:16
Alignment explanation
Indices: 25675276--25675307 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
25675266 ATAAGATGTG
25675276 CTAGAATAGATGATGA
1 CTAGAATAGATGATGA
25675292 CTAGAATAGATGATGA
1 CTAGAATAGATGATGA
25675308 TTGATGCGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (16 bp):
CTAGAATAGATGATGA
Found at i:25676493 original size:6 final size:6
Alignment explanation
Indices: 25676482--25676516 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
25676472 TTACTATTAT
* *
25676482 ATATAA ATATAA ATATAA ATATAG ATATAG ATATA
1 ATATAA ATATAA ATATAA ATATAA ATATAA ATATA
25676517 TAGATTAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (6 bp):
ATATAA
Found at i:25680107 original size:16 final size:15
Alignment explanation
Indices: 25680088--25680117 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
25680078 TTCATTTCTT
25680088 TTGCATTTAGATTAAC
1 TTGCATTTAG-TTAAC
25680104 TTGCATTTAGTTAA
1 TTGCATTTAGTTAA
25680118 TTAATTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.47
Consensus pattern (15 bp):
TTGCATTTAGTTAAC
Found at i:25680834 original size:23 final size:23
Alignment explanation
Indices: 25680804--25680850 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
25680794 TAAGATGTTT
25680804 TCAATAGTTTTGCAAAATAAATA
1 TCAATAGTTTTGCAAAATAAATA
25680827 TCAATAGTTTTGCAAAATAAATA
1 TCAATAGTTTTGCAAAATAAATA
25680850 T
1 T
25680851 TGATTTAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (23 bp):
TCAATAGTTTTGCAAAATAAATA
Found at i:25681435 original size:13 final size:13
Alignment explanation
Indices: 25681417--25681457 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
25681407 AAAAAAAATC
*
25681417 TATTTTTTATTTT
1 TATTTTTTATTAT
*
25681430 TATTTTTTAATAT
1 TATTTTTTATTAT
25681443 TATTTTCTTATTAT
1 TATTTT-TTATTAT
25681457 T
1 T
25681458 TTCTCCCTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 17 0.71
14 7 0.29
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (13 bp):
TATTTTTTATTAT
Found at i:25683338 original size:3 final size:3
Alignment explanation
Indices: 25683332--25683511 Score: 95
Period size: 3 Copynumber: 59.3 Consensus size: 3
25683322 CATCATCATC
* **
25683332 ATA ATA ATA ATA ATA ATA ATA ATA GAAA ATGA GGA ATA ATA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA AT-A ATA ATA ATA ATA ATA
* ** * * *
25683378 AAA ACC ATA AT- ATAA ATA ATAA ATA A-A A-A ACA AAA ATA GA-A ATG
1 ATA ATA ATA ATA AT-A ATA AT-A ATA ATA ATA ATA ATA ATA -ATA ATA
* *
25683422 GTA ATA ATA ATA ATA ATA ATA ATA A-A TATA AGTA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA A-TA ATA ATA ATA ATA
* * * *
25683468 AGA GTA TTA ATA ATAA ATA GTA ATA ATA ATA A-A ATTA ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A-TA ATA ATA A
25683512 AAAAATTGAT
Statistics
Matches: 137, Mismatches: 25, Indels: 30
0.71 0.13 0.16
Matches are distributed among these distances:
2 12 0.09
3 107 0.78
4 18 0.13
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:25683415 original size:26 final size:26
Alignment explanation
Indices: 25683337--25683420 Score: 71
Period size: 26 Copynumber: 3.1 Consensus size: 26
25683327 TCATCATAAT
* * *
25683337 AATAATAATAATAATAATAGAAAATGAGG
1 AATAATAATAA-AAAAACA-AAAAT-AGA
* * *
25683366 AATAATAATAAAAAAACCATAATATA
1 AATAATAATAAAAAAACAAAAATAGA
25683392 AATAATAA-ATAAAAAACAAAAATAGA
1 AATAATAATA-AAAAAACAAAAATAGA
25683418 AAT
1 AAT
25683421 GGTAATAATA
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
25 1 0.02
26 25 0.56
27 4 0.09
28 4 0.09
29 11 0.24
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (26 bp):
AATAATAATAAAAAAACAAAAATAGA
Found at i:25683512 original size:28 final size:27
Alignment explanation
Indices: 25683423--25683511 Score: 103
Period size: 28 Copynumber: 3.3 Consensus size: 27
25683413 ATAGAAATGG
*
25683423 TAATAATAATAATAATAATAAT-AAA-
1 TAATAATAATAGTAATAATAATAAAAT
* **
25683448 T-ATAAGTAATAGTAATAATAAGAGTAT
1 TAATAA-TAATAGTAATAATAATAAAAT
25683475 TAATAATAAATAGTAATAATAATAAAAT
1 TAATAAT-AATAGTAATAATAATAAAAT
25683503 TAATAATAA
1 TAATAATAA
25683512 AAAAATTGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
24 4 0.08
25 15 0.29
26 1 0.02
27 4 0.08
28 28 0.54
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33
Consensus pattern (27 bp):
TAATAATAATAGTAATAATAATAAAAT
Found at i:25683516 original size:15 final size:15
Alignment explanation
Indices: 25683488--25683518 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25683478 TAATAAATAG
*
25683488 TAATAATAATAAAAT
1 TAATAATAAAAAAAT
25683503 TAATAATAAAAAAAT
1 TAATAATAAAAAAAT
25683518 T
1 T
25683519 GATTAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAATAATAAAAAAAT
Found at i:25685329 original size:43 final size:42
Alignment explanation
Indices: 25685215--25685341 Score: 137
Period size: 43 Copynumber: 2.9 Consensus size: 42
25685205 TATGAATTTG
* * * *
25685215 TAACCTTAACTTGCTCCACTGCAACTTCAGGGAGATAAGGTT
1 TAACTTTAACCTGCTCCACTGTAACTTCAGGGAGATAAGCTT
* * **
25685257 TGCTATTTTCAGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTT
1 T--AACTTT-AACCTGCTCCACTGTAACTTCAGGGAGATAAG-CTT
*
25685303 TAACTTTAACCTGCTCCACTGTAACTTCAGGAAGATAAG
1 TAACTTTAACCTGCTCCACTGTAACTTCAGGGAGATAAG
25685342 GTTCGCTGTG
Statistics
Matches: 68, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
42 1 0.01
43 29 0.43
44 7 0.10
45 28 0.41
46 3 0.04
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (42 bp):
TAACTTTAACCTGCTCCACTGTAACTTCAGGGAGATAAGCTT
Found at i:25685489 original size:43 final size:44
Alignment explanation
Indices: 25685410--25685520 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 44
25685400 TTTAATCTGT
* *** *
25685410 TCCACTGCAACTTCAGGGA-A-AAGATTCGTTATCTTCAGTTTGC
1 TCCACTGCAACTTCAGGGAGATAAGA-TCGTTAACTTCAACCTAC
*
25685453 TCCACTGCAACTTCAGGGAGATAAGA-CTTTAACTTCAACCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATCGTTAACTTCAACCTAC
* *
25685496 TCCACTACAACTTTAGGGAGATAAG
1 TCCACTGCAACTTCAGGGAGATAAG
25685521 GTTTGCTATG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
43 53 0.91
44 1 0.02
45 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGATCGTTAACTTCAACCTAC
Found at i:25685703 original size:179 final size:179
Alignment explanation
Indices: 25685229--25685703 Score: 655
Period size: 179 Copynumber: 2.6 Consensus size: 179
25685219 CTTAACTTGC
* * * *
25685229 TCCACTGCAACTTCAGGGAGATAAGGTTTGCTATTTTCAGTCTGCTCCACTGTAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGA-A-AAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
* * * * *
25685294 ATAAGACTTTAACTTTAACCTGCTCCACTGTAACTTCAGGAAGATAAGGTTCGCTGTGATCTACT
64 ATAAGACTTTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTATGATCTACT
* * * * * * * *
25685359 CTATTGCAACTTAAGATAGATAATATCTGTTTATTTATAACTTTAATCTGT
129 CTACTGAAACTTAAGAGAGATAAGATATGCTTATTTATAACTTCAAACTGT
* *
25685410 TCCACTGCAACTTCAGGGAAAAGATTCGTTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGAT
1 TCCACTGCAACTTCAGGGAAAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGAT
* * * *
25685475 AAGACTTTAACTTCAACCTACTCCACTACAACTTTAGGGAGATAAGGTTTGCTATGATCTGCTCT
66 AAGACTTTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTATGATCTACTCT
* * * *
25685540 GCTGAAACTTTAGAGAGATGAGATATGCTTATTTATAGCTTCAAACTGT
131 ACTGAAACTTAAGAGAGATAAGATATGCTTATTTATAACTTCAAACTGT
* *
25685589 TCCACTGCAACTTTAGGGAAAAGATTCGCTATCTTCGGTCTGCTCCACTGCAACTTCAGGGAGAT
1 TCCACTGCAACTTCAGGGAAAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGAT
25685654 AAGACTTTAACTTCAACCTGC-CCTACTGCAACTTCAGGGAGATAAGGTTT
66 AAGACTTTAACTTCAACCTGCTCC-ACTGCAACTTCAGGGAGATAAGGTTT
25685704 AGTGGCTTCA
Statistics
Matches: 259, Mismatches: 34, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
178 2 0.01
179 237 0.92
180 1 0.00
181 19 0.07
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (179 bp):
TCCACTGCAACTTCAGGGAAAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGAT
AAGACTTTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTATGATCTACTCT
ACTGAAACTTAAGAGAGATAAGATATGCTTATTTATAACTTCAAACTGT
Found at i:25690162 original size:45 final size:43
Alignment explanation
Indices: 25690002--25690178 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 43
25689992 AGATCTGTTT
* *
25690002 ATTTATAGCTTCAATCTGATCCACTGCAACTTCAGGGA-A-AAT
1 ATTTAT-GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* *
25690044 ATTCACTAT-CTTCGATCTGCTCCACT-CTAACTTTAGGGAGATAAG
1 ATT---TATGCTTCAATCTGCTCCACTGC-AACTTCAGGGAGATAAG
* * *
25690089 ACTTTA-ACTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAG
1 A-TTTATGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
* *
25690132 GTTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAG
1 ATTTA-T-GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
25690177 AT
1 AT
25690179 CCGCCATTAT
Statistics
Matches: 109, Mismatches: 14, Indels: 21
0.76 0.10 0.15
Matches are distributed among these distances:
42 8 0.07
43 57 0.52
44 2 0.02
45 40 0.37
46 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (43 bp):
ATTTATGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
Found at i:25693142 original size:21 final size:20
Alignment explanation
Indices: 25693085--25693144 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
25693075 TTAGGTTTTA
25693085 TATATTAAATTATATATATAT
1 TATATTAAATTAT-TATATAT
* * *
25693106 TATAATGATTATTATTATAGTTT
1 TAT-ATTA-AATTATTATA-TAT
25693129 TATATTAAATTATTAT
1 TATATTAAATTATTAT
25693145 GATTACTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 11 0.35
22 10 0.32
23 10 0.32
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
TATATTAAATTATTATATAT
Found at i:25695134 original size:39 final size:40
Alignment explanation
Indices: 25695026--25695137 Score: 113
Period size: 39 Copynumber: 2.8 Consensus size: 40
25695016 CGACTTCGAG
* *
25695026 TCGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGAT
1 TCGATGAGACACTGGGTGTCAAC--TATTACTTCGGATAGAC
** ** * *
25695067 TCGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 TCGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAC
25695106 T-GATGAGACACTGGGTGTCAACTATTACTTCG
1 TCGATGAGACACTGGGTGTCAACTATTACTTCG
25695138 AACTATCCGA
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
38 18 0.32
39 20 0.35
40 1 0.02
41 16 0.28
42 2 0.04
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (40 bp):
TCGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAC
Found at i:25697393 original size:9 final size:9
Alignment explanation
Indices: 25697379--25697464 Score: 120
Period size: 9 Copynumber: 9.6 Consensus size: 9
25697369 ATAAGTATAA
25697379 AATTAACCG
1 AATTAACCG
25697388 AATTAACCG
1 AATTAACCG
*
25697397 AATTAATCG
1 AATTAACCG
25697406 AATTAACCG
1 AATTAACCG
25697415 AATT-ACTCG
1 AATTAAC-CG
*
25697424 AATTACCCG
1 AATTAACCG
*
25697433 AATTAACCA
1 AATTAACCG
25697442 AATTAACCG
1 AATTAACCG
*
25697451 AATTAATCG
1 AATTAACCG
25697460 AATTA
1 AATTA
25697465 TTTGTATAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
8 2 0.03
9 65 0.96
10 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:25697499 original size:5 final size:6
Alignment explanation
Indices: 25697484--25697530 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
25697474 AATTATATGT
*
25697484 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTTTTA TTT
25697531 ATTAAGTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 28 0.76
7 8 0.22
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:25697512 original size:20 final size:20
Alignment explanation
Indices: 25697489--25697527 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
25697479 TATGTTTTTT
25697489 ATTTTTATTTTTAGTTTTAG
1 ATTTTTATTTTTAGTTTTAG
*
25697509 ATTTTTATTTTTATTTTTA
1 ATTTTTATTTTTAGTTTTA
25697528 TTTATTAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (20 bp):
ATTTTTATTTTTAGTTTTAG
Found at i:25697571 original size:13 final size:13
Alignment explanation
Indices: 25697555--25697579 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25697545 AATTATTATG
25697555 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
25697568 ATTGGGTTGGGT
1 ATTGGGTTGGGT
25697580 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:25703804 original size:24 final size:24
Alignment explanation
Indices: 25703777--25703828 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
25703767 TTGCCAACTA
* *
25703777 TTCTTGCATTT-GTATTTGTATCTG
1 TTCTTGCATTTCCT-TTTGCATCTG
25703801 TTCTTGCATTTCCTTTTGCATCTG
1 TTCTTGCATTTCCTTTTGCATCTG
25703825 TTCT
1 TTCT
25703829 AATCTTTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.10, C:0.19, G:0.13, T:0.58
Consensus pattern (24 bp):
TTCTTGCATTTCCTTTTGCATCTG
Found at i:25708143 original size:3 final size:3
Alignment explanation
Indices: 25708135--25708316 Score: 106
Period size: 3 Copynumber: 60.3 Consensus size: 3
25708125 AACTACATAT
*
25708135 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GAAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
** * **
25708181 ATGA GGA ATA ATA ATA ATA ACA ACC ATA AT- ATAA ATA ATAA ATA A-A
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA AT-A ATA ATA
* * * * * *
25708227 A-A ACA AAA ATA GA-A ATG GTA GTA ATA ATA AAA ATA A-A AT- ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
25708269 AGTA ATA GTA ATA ATA ACA GTA TTA ATA ATAA ATA GTA ATA ATA ATA
1 A-TA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA
25708316 A
1 A
25708317 AATTACTAAA
Statistics
Matches: 140, Mismatches: 27, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
2 11 0.08
3 114 0.81
4 15 0.11
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:25708258 original size:29 final size:29
Alignment explanation
Indices: 25708149--25708285 Score: 75
Period size: 29 Copynumber: 4.6 Consensus size: 29
25708139 TAATAATAAT
* *
25708149 AATAATAATAATAATAATAATAATAATAG-
1 AATAATAGTAATAATAAAAATAA-AATAGA
* * * *
25708178 AA-AATGAGGAATAATAATAATAACAACCATA
1 AATAAT-AGTAATAATAAAAATAA-AA-TAGA
*
25708209 ATATAA-A-TAATAAATAAAAAACAAAAATAGA
1 A-ATAATAGTAAT-AAT-AAAAA-TAAAATAGA
** *
25708240 AATGGTAGTAATAATAAAAATAAAATATA
1 AATAATAGTAATAATAAAAATAAAATAGA
*
25708269 AGTAATAGTAATAATAA
1 AATAATAGTAATAATAA
25708286 CAGTATTAAT
Statistics
Matches: 81, Mismatches: 17, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
28 3 0.04
29 40 0.49
30 11 0.14
31 12 0.15
32 11 0.14
33 4 0.05
ACGTcount: A:0.65, C:0.03, G:0.07, T:0.25
Consensus pattern (29 bp):
AATAATAGTAATAATAAAAATAAAATAGA
Found at i:25708284 original size:32 final size:31
Alignment explanation
Indices: 25708214--25708285 Score: 74
Period size: 32 Copynumber: 2.3 Consensus size: 31
25708204 CCATAATATA
*
25708214 AATAATAAATAAAAAACAAAAATAGAAATGGT
1 AATAAT-AATAAAAAACAAAAATAGAAATAGT
* * *
25708246 AGTAATAATAAAAATA-AAATATAAGTAATAGT
1 AATAATAATAAAAA-ACAAAAAT-AGAAATAGT
25708278 AATAATAA
1 AATAATAA
25708286 CAGTATTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.67, C:0.01, G:0.08, T:0.24
Consensus pattern (31 bp):
AATAATAATAAAAAACAAAAATAGAAATAGT
Found at i:25708321 original size:28 final size:28
Alignment explanation
Indices: 25708251--25708331 Score: 78
Period size: 28 Copynumber: 3.0 Consensus size: 28
25708241 ATGGTAGTAA
*
25708251 TAATAAAAATAAAA-T-ATAAGT-AATAG
1 TAATAATAATAAAATTAATAA-TAAATAG
* **
25708277 TAATAATAACAGTATTAATAATAAATAG
1 TAATAATAATAAAATTAATAATAAATAG
* *
25708305 TAATAATAATAAAATTACTAAAAAATA
1 TAATAATAATAAAATTAATAATAAATA
25708332 AAATTGATTA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
26 10 0.23
27 2 0.05
28 31 0.72
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (28 bp):
TAATAATAATAAAATTAATAATAAATAG
Found at i:25709267 original size:14 final size:14
Alignment explanation
Indices: 25709241--25709282 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
25709231 ACCCTCGTTC
*
25709241 TCTTCGTTTTTGTT
1 TCTTCGTTGTTGTT
25709255 T-TTGCGTTGTTGTT
1 TCTT-CGTTGTTGTT
*
25709269 TCTTTGTTGTTGTT
1 TCTTCGTTGTTGTT
25709283 GTCCCGTGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 2 0.08
14 20 0.83
15 2 0.08
ACGTcount: A:0.00, C:0.10, G:0.21, T:0.69
Consensus pattern (14 bp):
TCTTCGTTGTTGTT
Found at i:25710783 original size:43 final size:43
Alignment explanation
Indices: 25710734--25710884 Score: 180
Period size: 43 Copynumber: 3.5 Consensus size: 43
25710724 TATCCCAAAT
* * *
25710734 ATGGTCTTACATGTTATCACATATCGATGCCATTGTCCCAGAC
1 ATGGTCTTACATGTAATCACATATCGATCCCAATGTCCCAGAC
* * * *
25710777 AGGGTCTTACACGAAATCATATAAT-GATCCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACAT-ATCGATCCCAATGTCCCAGAC
* *
25710820 ATGGTCTTACATGTAATCACA-ATACAATTCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACATAT-CGATCCCAATGTCCCAGAC
*
25710863 ATGGTCTTACATGTAGTCACAT
1 ATGGTCTTACATGTAATCACAT
25710885 CTTGATAGCC
Statistics
Matches: 90, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.02
43 86 0.96
44 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATCCCAATGTCCCAGAC
Found at i:25714052 original size:25 final size:25
Alignment explanation
Indices: 25713985--25714052 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 25
25713975 ATTCATGTAT
25713985 GCTCATACGAGCTGTA-AACGAAAA
1 GCTCATACGAGCTGTATAACGAAAA
* * * * **
25714009 GCTCCTTCGAGTTGAATAACGGGAA
1 GCTCATACGAGCTGTATAACGAAAA
*
25714034 GCTCATGCGAGCTGTATAA
1 GCTCATACGAGCTGTATAA
25714053 TAGGAAACTC
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
24 12 0.36
25 21 0.64
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (25 bp):
GCTCATACGAGCTGTATAACGAAAA
Found at i:25715373 original size:44 final size:44
Alignment explanation
Indices: 25715310--25715398 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
25715300 GTCATTGATA
*
25715310 AATACATAGTCATAAAATTTAACCTATTAAAAATTATTTATTTC
1 AATACATAGTCATAAAATTTAACCTAATAAAAATTATTTATTTC
25715354 AATACATAGTCATAAAATTTAACCTAATAAAAATTATTTATTTC
1 AATACATAGTCATAAAATTTAACCTAATAAAAATTATTTATTTC
25715398 A
1 A
25715399 TAATTTTTAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.39
Consensus pattern (44 bp):
AATACATAGTCATAAAATTTAACCTAATAAAAATTATTTATTTC
Found at i:25715749 original size:12 final size:11
Alignment explanation
Indices: 25715701--25715760 Score: 61
Period size: 12 Copynumber: 5.5 Consensus size: 11
25715691 CAAAAAAAAT
25715701 GAAAAATATTA
1 GAAAAATATTA
*
25715712 GAAAAATATTTT
1 GAAAAATA-TTA
*
25715724 GAGAAATA-T-
1 GAAAAATATTA
25715733 GAAAAATATTA
1 GAAAAATATTA
25715744 GAAAAATTATTA
1 GAAAAA-TATTA
*
25715756 TAAAA
1 GAAAA
25715761 GGTAAAAAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
9 7 0.17
10 2 0.05
11 14 0.34
12 18 0.44
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (11 bp):
GAAAAATATTA
Found at i:25716076 original size:33 final size:33
Alignment explanation
Indices: 25716030--25716110 Score: 91
Period size: 33 Copynumber: 2.5 Consensus size: 33
25716020 CAATAGCAAT
25716030 TTTTATTTATTTATAATATTT-TATA-AATTTTA
1 TTTTATTTATTTATAATATTTCTATATAA-TTTA
* *
25716062 TTTTAGTTTTTTTATAATTTTTCTATATAATTTA
1 TTTTA-TTTATTTATAATATTTCTATATAATTTA
25716096 -TTTA-TT-TTTATAATA
1 TTTTATTTATTTATAATA
25716111 ATTATAGAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
30 8 0.19
31 2 0.05
32 5 0.12
33 18 0.42
34 8 0.19
35 2 0.05
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (33 bp):
TTTTATTTATTTATAATATTTCTATATAATTTA
Found at i:25716179 original size:21 final size:20
Alignment explanation
Indices: 25716123--25716179 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 20
25716113 TATAGAAAAA
* * *
25716123 TAAAAATTATTAAAAGTT-T
1 TAAAAACTATAAAAATTTAT
* *
25716142 TAAAAACTATTAGAATTTAT
1 TAAAAACTATAAAAATTTAT
25716162 TAAAATACTATAAAAATT
1 TAAAA-ACTATAAAAATT
25716180 ATGAACCTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 15 0.48
20 6 0.19
21 10 0.32
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.39
Consensus pattern (20 bp):
TAAAAACTATAAAAATTTAT
Found at i:25716180 original size:66 final size:66
Alignment explanation
Indices: 25716104--25716228 Score: 157
Period size: 66 Copynumber: 1.9 Consensus size: 66
25716094 TATTTATTTT
*
25716104 TATAATAATTATAGAA-AAATA-AAAATTATTAAAAGTTTTAAAAACTATTAG-AATTTATTAAA
1 TATAAAAATTAT-GAACAAATAGAAAATT-TTAAAA-TTTTAAAAACTATTAGAAATTTATTAAA
25716166 ATAC
63 ATAC
** *
25716170 TATAAAAATTATGAACCTTATAGAAAATTTTAAAATTTTAAAAATTATTAGAAATTTAT
1 TATAAAAATTATGAA-CAAATAGAAAATTTTAAAATTTTAAAAACTATTAGAAATTTAT
25716229 AATATATAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
65 3 0.06
66 26 0.51
67 16 0.31
68 6 0.12
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (66 bp):
TATAAAAATTATGAACAAATAGAAAATTTTAAAATTTTAAAAACTATTAGAAATTTATTAAAATA
C
Found at i:25716311 original size:24 final size:24
Alignment explanation
Indices: 25716274--25716321 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
25716264 ATTACTTATC
*
25716274 ATTTTATAAAATTTTAATAATTTT
1 ATTTTATAAAATTTCAATAATTTT
* *
25716298 ATTTTGTAACATTTCAATAATTTT
1 ATTTTATAAAATTTCAATAATTTT
25716322 TATTAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (24 bp):
ATTTTATAAAATTTCAATAATTTT
Found at i:25726946 original size:30 final size:30
Alignment explanation
Indices: 25726910--25727010 Score: 184
Period size: 30 Copynumber: 3.3 Consensus size: 30
25726900 AGTTTCAGAT
25726910 TGAAGAAAAAGTTTTCTTGAAAGTATCACC
1 TGAAGAAAAAGTTTTCTTGAAAGTATCACC
25726940 TGAAGAAAAAGTTTTCTTGAAAGTATCACC
1 TGAAGAAAAAGTTTTCTTGAAAGTATCACC
25726970 TGAAGAAAAAGTTTTCTTGAAAGTATCACC
1 TGAAGAAAAAGTTTTCTTGAAAGTATCACC
25727000 GTGGAAGAAAA
1 -T-GAAGAAAA
25727011 TACACAGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
30 60 0.87
31 1 0.01
32 8 0.12
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.28
Consensus pattern (30 bp):
TGAAGAAAAAGTTTTCTTGAAAGTATCACC
Found at i:25733562 original size:20 final size:19
Alignment explanation
Indices: 25733535--25733576 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
25733525 TTTTCCAAAT
25733535 TTTCTTACTTT-CATTTGCA
1 TTTCTTACTTTCCA-TTGCA
25733554 TTTCATTACTTTCCATTGCA
1 TTTC-TTACTTTCCATTGCA
25733574 TTT
1 TTT
25733577 ACTTTCTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 15 0.71
21 2 0.10
ACGTcount: A:0.17, C:0.21, G:0.05, T:0.57
Consensus pattern (19 bp):
TTTCTTACTTTCCATTGCA
Found at i:25741525 original size:20 final size:20
Alignment explanation
Indices: 25741500--25741546 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
25741490 AGTCATGGAC
25741500 ATGGTTTAAATGAAATTTTA
1 ATGGTTTAAATGAAATTTTA
25741520 ATGGTTTAAATGAAATTTTA
1 ATGGTTTAAATGAAATTTTA
25741540 ATGGTTT
1 ATGGTTT
25741547 TAAAAGGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (20 bp):
ATGGTTTAAATGAAATTTTA
Found at i:25744341 original size:27 final size:27
Alignment explanation
Indices: 25744310--25744363 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
25744300 TAAAACCCTT
25744310 AATAGTGATAAAATTAGGGGTGCTTTC
1 AATAGTGATAAAATTAGGGGTGCTTTC
25744337 AATAGTGATAAAATTAGGGGTGCTTTC
1 AATAGTGATAAAATTAGGGGTGCTTTC
25744364 GACATTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.33
Consensus pattern (27 bp):
AATAGTGATAAAATTAGGGGTGCTTTC
Found at i:25745226 original size:5 final size:5
Alignment explanation
Indices: 25745216--25745244 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
25745206 TAAAAAGACA
25745216 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
25745245 GAGAGAGCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:25748338 original size:65 final size:65
Alignment explanation
Indices: 25748227--25748360 Score: 232
Period size: 65 Copynumber: 2.1 Consensus size: 65
25748217 GAGAATACCC
*
25748227 TCAAATTGTGAGCTTTTGGTATGCTTCGCGGAAAAGATTCCGAGGATAAGGACTTTGTGGTCCGG
1 TCAAATTGTGAGCTTTTGGTATGCTTCGCGGAAAAGATTACGAGGATAAGGACTTTGTGGTCCGG
** *
25748292 TCAAATTGTGAGCTTTTGGTATGCTTCGCGGAAAAGATTATTAGGATAAGGATTTTGTGGTCCGG
1 TCAAATTGTGAGCTTTTGGTATGCTTCGCGGAAAAGATTACGAGGATAAGGACTTTGTGGTCCGG
25748357 TCAA
1 TCAA
25748361 GTGATGCGGT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (65 bp):
TCAAATTGTGAGCTTTTGGTATGCTTCGCGGAAAAGATTACGAGGATAAGGACTTTGTGGTCCGG
Found at i:25749349 original size:20 final size:19
Alignment explanation
Indices: 25749326--25749386 Score: 77
Period size: 20 Copynumber: 3.1 Consensus size: 19
25749316 TGAAATTCTA
25749326 AAAGATAAATACAAATAAAT
1 AAAGATAAATA-AAATAAAT
* *
25749346 AAAGATAATTAAATGTAAAT
1 AAAGATAAATAAA-ATAAAT
25749366 AAAGATAAATGAAAATAAAT
1 AAAGATAAAT-AAAATAAAT
25749386 A
1 A
25749387 CTAGAATTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 2 0.06
20 30 0.86
21 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (19 bp):
AAAGATAAATAAAATAAAT
Found at i:25749353 original size:10 final size:10
Alignment explanation
Indices: 25749326--25749386 Score: 65
Period size: 10 Copynumber: 6.1 Consensus size: 10
25749316 TGAAATTCTA
25749326 AAAGATAAAT
1 AAAGATAAAT
25749336 ACAA-ATAAAT
1 A-AAGATAAAT
*
25749346 AAAGATAATT
1 AAAGATAAAT
25749356 AAATG-TAAAT
1 AAA-GATAAAT
25749366 AAAGATAAAT
1 AAAGATAAAT
25749376 GAAA-ATAAAT
1 -AAAGATAAAT
25749386 A
1 A
25749387 CTAGAATTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
9 4 0.09
10 34 0.77
11 6 0.14
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:25749382 original size:40 final size:39
Alignment explanation
Indices: 25749326--25749407 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 39
25749316 TGAAATTCTA
*
25749326 AAAGATAAATACAAATAAATA-AAGATAATTAAATGTAAAT
1 AAAGATAAATACAAATAAATACAAG--AATTAAATCTAAAT
*
25749366 AAAGATAAATGA-AAATAAATACTAGAATTAAATCTAAAT
1 AAAGATAAAT-ACAAATAAATACAAGAATTAAATCTAAAT
25749405 AAA
1 AAA
25749408 AATCCTTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
39 16 0.42
40 19 0.50
41 3 0.08
ACGTcount: A:0.65, C:0.04, G:0.07, T:0.24
Consensus pattern (39 bp):
AAAGATAAATACAAATAAATACAAGAATTAAATCTAAAT
Found at i:25750202 original size:96 final size:97
Alignment explanation
Indices: 25750028--25750214 Score: 286
Period size: 96 Copynumber: 1.9 Consensus size: 97
25750018 ATTTTATTTA
* * * * *
25750028 TTTATTTTTACTTAAGAATATATTGAACCTTTTGATGCGAAGAGAGATGACAGCCAAGCACCCCA
1 TTTATTATTACTTAAGAACATATCGAACCTTTTGACGAGAAGAGAGATGACAGCCAAGCACCCCA
25750093 CCCCGGTTACTCAGCCCAACACATTTCTAATT
66 CCCCGGTTACTCAGCCCAACACATTTCTAATT
***
25750125 TTTATTATT-CTTAAGAACATATCGAACCTTTTGACGAGAAGAGAGATGACAGCCAAGCACTTTA
1 TTTATTATTACTTAAGAACATATCGAACCTTTTGACGAGAAGAGAGATGACAGCCAAGCACCCCA
*
25750189 CCTCGGTTACTCAGCCCAACACATTT
66 CCCCGGTTACTCAGCCCAACACATTT
25750215 TTAAAAATTA
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
96 73 0.90
97 8 0.10
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (97 bp):
TTTATTATTACTTAAGAACATATCGAACCTTTTGACGAGAAGAGAGATGACAGCCAAGCACCCCA
CCCCGGTTACTCAGCCCAACACATTTCTAATT
Found at i:25750732 original size:15 final size:15
Alignment explanation
Indices: 25750712--25750741 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
25750702 AAAATTATAT
25750712 GGGCAGCAACAACCA
1 GGGCAGCAACAACCA
25750727 GGGCAGCAACAACCA
1 GGGCAGCAACAACCA
25750742 AATCAGTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.33, G:0.27, T:0.00
Consensus pattern (15 bp):
GGGCAGCAACAACCA
Found at i:25751009 original size:18 final size:17
Alignment explanation
Indices: 25750976--25751030 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 17
25750966 TTAATATCTG
25750976 AAAATAATAAAT--AAT
1 AAAATAATAAATAAAAT
25750991 AAAATAATAAGATAAAAT
1 AAAATAATAA-ATAAAAT
25751009 AAAAATAA-AAATAAAAAT
1 -AAAATAATAAAT-AAAAT
25751027 AAAA
1 AAAA
25751031 ATTGGGTTGC
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
15 10 0.29
16 2 0.06
17 6 0.17
18 10 0.29
19 7 0.20
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (17 bp):
AAAATAATAAATAAAAT
Found at i:25751015 original size:6 final size:6
Alignment explanation
Indices: 25750981--25751032 Score: 63
Period size: 6 Copynumber: 8.5 Consensus size: 6
25750971 ATCTGAAAAT
25750981 AATAAA TAAT-AA AATAATA AGAT-AA AATAAA AATAAA AATAAA AATAAA
1 AATAAA -AATAAA AATAA-A A-ATAAA AATAAA AATAAA AATAAA AATAAA
25751030 AAT
1 AAT
25751033 TGGGTTGCCT
Statistics
Matches: 41, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.12
6 28 0.68
7 6 0.15
8 2 0.05
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (6 bp):
AATAAA
Found at i:25758466 original size:46 final size:46
Alignment explanation
Indices: 25758413--25758541 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
25758403 TATTTGGGCA
*
25758413 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
25758459 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
25758505 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25758542 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:25760138 original size:10 final size:10
Alignment explanation
Indices: 25760123--25760178 Score: 62
Period size: 10 Copynumber: 5.6 Consensus size: 10
25760113 ATTCTAAAAG
25760123 ATAAATACAA-
1 ATAAATA-AAT
25760133 ATAAATAAAT
1 ATAAATAAAT
*
25760143 ATAATTAAAT
1 ATAAATAAAT
*
25760153 ATAAATAAAG
1 ATAAATAAAT
25760163 ATAAATGAAA-
1 ATAAAT-AAAT
25760173 ATAAAT
1 ATAAAT
25760179 CCTAGAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
9 2 0.05
10 36 0.88
11 3 0.07
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.27
Consensus pattern (10 bp):
ATAAATAAAT
Found at i:25760146 original size:20 final size:19
Alignment explanation
Indices: 25760119--25760178 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 19
25760109 TAAAATTCTA
25760119 AAAGATAAATACAAATAAAT
1 AAAGATAAATA-AAATAAAT
* *
25760139 AAATATAATTAAATATAAAT
1 AAAGATAAATAAA-ATAAAT
25760159 AAAGATAAATGAAAATAAAT
1 AAAGATAAAT-AAAATAAAT
25760179 CCTAGAATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 2 0.06
20 29 0.85
21 3 0.09
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (19 bp):
AAAGATAAATAAAATAAAT
Found at i:25760199 original size:39 final size:40
Alignment explanation
Indices: 25760119--25760200 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 40
25760109 TAAAATTCTA
*
25760119 AAAGATAAATACAAATAAATAAATATAATTAAATATAAAT
1 AAAGATAAATACAAATAAATAAATAGAATTAAATATAAAT
** *
25760159 AAAGATAAATGA-AAATAAAT-CCTAGAATTAAATCTAAAT
1 AAAGATAAAT-ACAAATAAATAAATAGAATTAAATATAAAT
25760198 AAA
1 AAA
25760201 AATCCTTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 18 0.49
40 18 0.49
41 1 0.03
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.26
Consensus pattern (40 bp):
AAAGATAAATACAAATAAATAAATAGAATTAAATATAAAT
Found at i:25768391 original size:6 final size:6
Alignment explanation
Indices: 25768382--25768430 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
25768372 AAAATAGAAA
* * *
25768382 TAAAAC TAAAAA TAAGAAAT TAAAAT TAAAAT TAAAAT TAAAAC TAAAA
1 TAAAAT TAAAAT TAA-AA-T TAAAAT TAAAAT TAAAAT TAAAAT TAAAA
25768431 ACAAGATGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
6 31 0.82
7 4 0.11
8 3 0.08
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (6 bp):
TAAAAT
Found at i:25768391 original size:18 final size:19
Alignment explanation
Indices: 25768370--25768431 Score: 83
Period size: 18 Copynumber: 3.3 Consensus size: 19
25768360 TCAATAGACA
25768370 TAAAAATAGAAA-TAAAAC
1 TAAAAATAGAAATTAAAAC
*
25768388 TAAAAATAAGAAATTAAAAT
1 TAAAAAT-AGAAATTAAAAC
*
25768408 TAAAATTA-AAATTAAAAC
1 TAAAAATAGAAATTAAAAC
25768426 TAAAAA
1 TAAAAA
25768432 CAAGATGTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 21 0.55
19 6 0.16
20 11 0.29
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (19 bp):
TAAAAATAGAAATTAAAAC
Found at i:25770149 original size:5 final size:5
Alignment explanation
Indices: 25770122--25770177 Score: 60
Period size: 5 Copynumber: 11.2 Consensus size: 5
25770112 GTAGTAAATC
* * * *
25770122 AATAA ACTAA GATAA AATGA AATAA AATAA TAATAA AATAA AAT-A AAGAA
1 AATAA AATAA AATAA AATAA AATAA AATAA -AATAA AATAA AATAA AATAA
25770172 AATAA A
1 AATAA A
25770178 GAACAGGGGA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
4 3 0.07
5 33 0.80
6 5 0.12
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:25777328 original size:6 final size:6
Alignment explanation
Indices: 25777309--25777358 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
25777299 TAAATAAAGG
* * *
25777309 AAAATA AAATTA AAAATA AAAATA AAATTGA AAAAT- ATAAT- AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAAT-A AAAATA AAAATA AAAATA
25777356 AAA
1 AAA
25777359 GGGACTTGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
5 8 0.22
6 23 0.64
7 5 0.14
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (6 bp):
AAAATA
Done.