Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113101708
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2797742 characters in sequence are not A, C, G, or T
File 83 of 352
Found at i:26170139 original size:6 final size:6
Alignment explanation
Indices: 26170109--26170239 Score: 81
Period size: 6 Copynumber: 21.3 Consensus size: 6
26170099 AAGAAACATT
* * *
26170109 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* ** * *
26170158 ATCAAA ATCAGA ATCAGA ATCAGA ATTTG- GTGACAGA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* *
26170207 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
26170240 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 20, Indels: 22
0.69 0.15 0.16
Matches are distributed among these distances:
5 5 0.05
6 78 0.83
7 8 0.09
8 3 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:26170164 original size:37 final size:37
Alignment explanation
Indices: 26170118--26170239 Score: 157
Period size: 37 Copynumber: 3.5 Consensus size: 37
26170108 TATCAGAACT
*
26170118 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
**
26170155 AGAATCAAAATCAGAATCAGAATCAGAATTTGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
* *
26170192 AGAAT-----T-AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
26170223 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
26170240 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
31 26 0.36
32 1 0.01
36 1 0.01
37 44 0.61
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:26170169 original size:31 final size:31
Alignment explanation
Indices: 26170132--26170239 Score: 126
Period size: 31 Copynumber: 3.3 Consensus size: 31
26170122 TCAAAATGAG
26170132 AATCAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAGGTGACAGAATCAA
* *
26170163 AATCAGAATCAGAATCAGAATTTGGTGACAGAATTAG
1 AATCAGAATCAGAATC---A---GGTGACAGAATCAA
* *
26170200 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAGGTGACAGAATCAA
26170231 AATCAGAAT
1 AATCAGAAT
26170240 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 6, Indels: 12
0.78 0.07 0.14
Matches are distributed among these distances:
31 36 0.55
34 2 0.03
37 27 0.42
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGGTGACAGAATCAA
Found at i:26170759 original size:27 final size:27
Alignment explanation
Indices: 26170743--26170990 Score: 74
Period size: 27 Copynumber: 9.2 Consensus size: 27
26170733 AACACCTTAG
* *
26170743 GGGTAAAACAGTAATTTTATAAATTGA
1 GGGTAAAACAGTAATTTAACAAATTGA
** *
26170770 GGGTAAAACAGTAATTCT-GTAAATCGA
1 GGGTAAAACAGTAATT-TAACAAATTGA
* * **
26170797 GGGTAAAACGGTAATTCT-ATAAATCAA
1 GGGTAAAACAGTAATT-TAACAAATTGA
* * * *** *
26170824 TGATAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTAACAAATTGA
* ** **
26170851 GGGTAAAACGGTAATTCT-GTAAATCAA
1 GGGTAAAACAGTAATT-TAACAAATTGA
** *
26170878 GGGTAAAACAGTAATTCT-GTAAATCGA
1 GGGTAAAACAGTAATT-TAACAAATTGA
** * * *
26170905 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTAACAAATTGA
** ** *
26170932 GGGTAAAATGGTAATTCT-GTAAATCGA
1 GGGTAAAACAGTAATT-TAACAAATTGA
* ***
26170959 GGGTAAAACAGTGATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTAACAAATTGA
26170986 GGGTA
1 GGGTA
26170991 CTTTGATAAT
Statistics
Matches: 189, Mismatches: 26, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
26 3 0.02
27 183 0.97
28 3 0.02
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTAACAAATTGA
Found at i:26170811 original size:54 final size:54
Alignment explanation
Indices: 26170743--26170990 Score: 334
Period size: 54 Copynumber: 4.6 Consensus size: 54
26170733 AACACCTTAG
* *
26170743 GGGTAAAACAGTAATTTTATAAATTGAGGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGA
* * * * * *
26170797 GGGTAAAACGGTAATTCTATAAATCAATGATAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGA
* * *
26170851 GGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGA
* **
26170905 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGA
* * * *
26170959 GGGTAAAACAGTGATTTTGTAAATTGAGGGTA
1 GGGTAAAACGGTAATTTTATAAATCGAGGGTA
26170991 CTTTGATAAT
Statistics
Matches: 170, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 170 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (54 bp):
GGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGA
Found at i:26170980 original size:81 final size:81
Alignment explanation
Indices: 26170743--26170990 Score: 361
Period size: 81 Copynumber: 3.1 Consensus size: 81
26170733 AACACCTTAG
* * * *
26170743 GGGTAAAACAGTAATTTTATAAATTGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG
* *
26170808 TAATTCTATAAATCAA
66 TAATTCTGTAAATCGA
* * * *
26170824 TGATAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG
26170889 TAATTCTGTAAATCGA
66 TAATTCTGTAAATCGA
* *
26170905 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG
* * *
26170970 TGATTTTGTAAATTGA
66 TAATTCTGTAAATCGA
26170986 GGGTA
1 GGGTA
26170991 CTTTGATAAT
Statistics
Matches: 148, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 148 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (81 bp):
GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG
TAATTCTGTAAATCGA
Found at i:26171040 original size:53 final size:52
Alignment explanation
Indices: 26170967--26171135 Score: 171
Period size: 53 Copynumber: 3.2 Consensus size: 52
26170957 GAGGGTAAAA
* * *
26170967 CAGTGATTTTGTAAATTGAGGGTACTTTGATAATTTACAAGTCTAGGGTATTT
1 CAGTAATTTTATAAACTGAGGGTACTTTGATAATTTACAA-TCTAGGGTATTT
* *
26171020 CAGTAATTTTATAAACTGAGGGTA-TTTCGATAATTCTACAAATCGAGGATATTT
1 CAGTAATTTTATAAACTGAGGGTACTTT-GATAATT-TAC-AATCTAGGGTATTT
** * * * *
26171074 GGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAA-CTGGGGGTATTT
1 CAGTAATTTTATAAACTGAGGGTACTTTGATAA-TTTACAATCT-AGGGTATTT
26171127 CAGTAATTT
1 CAGTAATTT
26171136 GGTAAACTAA
Statistics
Matches: 95, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
52 4 0.04
53 44 0.46
54 40 0.42
55 7 0.07
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (52 bp):
CAGTAATTTTATAAACTGAGGGTACTTTGATAATTTACAATCTAGGGTATTT
Found at i:26171082 original size:54 final size:53
Alignment explanation
Indices: 26170967--26171135 Score: 171
Period size: 54 Copynumber: 3.2 Consensus size: 53
26170957 GAGGGTAAAA
* * * * * *
26170967 CAGTGATTTTGTAAATTGAGGGTACTTTGATAATTTACAAGTCTAGGGTATTT
1 CAGTAATTTTATAAACTGAGGGTACTTTGATAATTTACAAATCGAGGATATTT
26171020 CAGTAATTTTATAAACTGAGGGTA-TTTCGATAATTCTACAAATCGAGGATATTT
1 CAGTAATTTTATAAACTGAGGGTACTTT-GATAATT-TACAAATCGAGGATATTT
** * * * * * *
26171074 GGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTT
1 CAGTAATTTTATAAACTGAGGGTACTTTGATAA-TTTACAAATCGAGGATATTT
26171127 CAGTAATTT
1 CAGTAATTT
26171136 GGTAAACTAA
Statistics
Matches: 96, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
52 3 0.03
53 43 0.45
54 45 0.47
55 5 0.05
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (53 bp):
CAGTAATTTTATAAACTGAGGGTACTTTGATAATTTACAAATCGAGGATATTT
Found at i:26171132 original size:26 final size:27
Alignment explanation
Indices: 26171011--26171135 Score: 105
Period size: 27 Copynumber: 4.7 Consensus size: 27
26171001 TTACAAGTCT
26171011 AGGGTATTTCAGTAATTTTATAAACTG
1 AGGGTATTTCAGTAATTTTATAAACTG
* *
26171038 AGGGTATTTC-GATAATTCTACAAA-TCG
1 AGGGTATTTCAG-TAATTTTATAAACT-G
* ** *
26171065 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTATAAACTG
* * *
26171092 GGGGTACTTT-GGTAATTTTA-CAACTG
1 AGGGTA-TTTCAGTAATTTTATAAACTG
*
26171118 GGGGTATTTCAGTAATTT
1 AGGGTATTTCAGTAATTT
26171136 GGTAAACTAA
Statistics
Matches: 80, Mismatches: 12, Indels: 13
0.76 0.11 0.12
Matches are distributed among these distances:
25 3 0.04
26 19 0.24
27 54 0.68
28 4 0.05
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTATAAACTG
Found at i:26176807 original size:20 final size:20
Alignment explanation
Indices: 26176776--26176827 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
26176766 TAAAAATCAT
*
26176776 TTAAAATGATTTTAACTTCA
1 TTAAAATCATTTTAACTTCA
* * **
26176796 TTGAAATCATTTTGACTTGG
1 TTAAAATCATTTTAACTTCA
26176816 TTAAAATCATTT
1 TTAAAATCATTT
26176828 GCACTTGATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.46
Consensus pattern (20 bp):
TTAAAATCATTTTAACTTCA
Found at i:26185973 original size:14 final size:14
Alignment explanation
Indices: 26185954--26185981 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26185944 GCACAGCCGA
26185954 AGGGAGAGGGAGAG
1 AGGGAGAGGGAGAG
26185968 AGGGAGAGGGAGAG
1 AGGGAGAGGGAGAG
26185982 GCAGCGAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (14 bp):
AGGGAGAGGGAGAG
Found at i:26190181 original size:24 final size:24
Alignment explanation
Indices: 26190149--26190435 Score: 96
Period size: 27 Copynumber: 11.0 Consensus size: 24
26190139 CTCTTCCTCT
26190149 TCTCTCCTTC-GAGCATCCTCTTCC
1 TCTCTCCTTCTG-GCATCCTCTTCC
*
26190173 TCTCTCCTTCTGGCCTCCTCTTCC
1 TCTCTCCTTCTGGCATCCTCTTCC
* * * *
26190197 TCT-TCCGTCCTAGCTTCTTCTTCCTCC
1 TCTCTCC-TTCTGGCATC--C-TCTTCC
* *
26190224 TCTCTCCTCCTGGCCTCTTCTTCCTCCTCC
1 TCTCTCCTTCTGGCATC--C-T-CT--TCC
* * *
26190254 TCTCTCCTTCTGGCCTCCTTTTCT
1 TCTCTCCTTCTGGCATCCTCTTCC
* *
26190278 TCTCTTCTCTTAGCT-TCTTCCTCTTCC
1 TCTC-TC-CTT--CTGGCATCCTCTTCC
* *
26190305 TCTCTCCTCCTCTTAGCTTCCTCTTCC
1 TCTCTCCT--TC-TGGCATCCTCTTCC
* *
26190332 TCTCTCCTTCTCTTAGCTTCTTCCTCTTCC
1 TCTCTCC-T-TC-T-G--GCATCCTCTTCC
* * *
26190362 TCTCTCCTTCTGGCCTCCTTTTCT
1 TCTCTCCTTCTGGCATCCTCTTCC
* *
26190386 TCTCTTCTCTTAGCT-TCTTCCTCTTCC
1 TCTC-TC-CTT--CTGGCATCCTCTTCC
*
26190413 TCTCTCCTTCTGGCTTCCTCTTC
1 TCTCTCCTTCTGGCATCCTCTTC
26190436 TTCTTCCCTT
Statistics
Matches: 210, Mismatches: 27, Indels: 52
0.73 0.09 0.18
Matches are distributed among these distances:
23 5 0.02
24 59 0.28
25 11 0.05
26 14 0.07
27 71 0.34
28 12 0.06
29 1 0.00
30 37 0.18
ACGTcount: A:0.02, C:0.45, G:0.06, T:0.46
Consensus pattern (24 bp):
TCTCTCCTTCTGGCATCCTCTTCC
Found at i:26190193 original size:51 final size:51
Alignment explanation
Indices: 26190138--26190342 Score: 138
Period size: 51 Copynumber: 3.9 Consensus size: 51
26190128 CTTGTAGCTC
*
26190138 CCTCTTCCTCTTCTCTCCT-TCGAGCATCCTCTTCCTCTCTCCTTCTGGCCT
1 CCTCTTCCTCTTCTCTCCTCT-GAGCTTCCTCTTCCTCTCTCCTTCTGGCCT
* *
26190189 CCTCTTCCTCTTC-CGT-C-CT-AGCTTCTTCTTCCTCCTCTCTCCTCCTGGCCT
1 CCTCTTCCTCTTCTC-TCCTCTGAGCTTC--C-TCTTCCTCTCTCCTTCTGGCCT
* * * * * *
26190240 CTTCTTCCTCCTCCTCTCTCCTTCTG-GCCTCCTTTTCTTCTCTTCTCTTAGCT-TCTT
1 CCTCTTCCT-CT--TCTCTCC-TCTGAGCTTCCTCTTCCTCTC-TC-CTT--CTGGCCT
*
26190297 CCTCTTCCTC-TCTCCTCCTCTTAGCTTCCTCTTCCTCTCTCCTTCT
1 CCTCTTCCTCTTCT-CTCCTCTGAGCTTCCTCTTCCTCTCTCCTTCT
26190343 CTTAGCTTCT
Statistics
Matches: 119, Mismatches: 16, Indels: 39
0.68 0.09 0.22
Matches are distributed among these distances:
48 5 0.04
50 6 0.05
51 42 0.35
52 5 0.04
53 8 0.07
54 27 0.23
55 5 0.04
56 3 0.03
57 16 0.13
58 2 0.02
ACGTcount: A:0.02, C:0.47, G:0.06, T:0.45
Consensus pattern (51 bp):
CCTCTTCCTCTTCTCTCCTCTGAGCTTCCTCTTCCTCTCTCCTTCTGGCCT
Found at i:26190250 original size:17 final size:15
Alignment explanation
Indices: 26190222--26190270 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
26190212 TCTTCTTCCT
26190222 CCTCTCTCCTCCTGG
1 CCTCTCTCCTCCTGG
26190237 CCTCTTCTTCCTCCT--
1 CCTC-TC-TCCTCCTGG
*
26190252 CCTCTCTCCTTCTGG
1 CCTCTCTCCTCCTGG
26190267 CCTC
1 CCTC
26190271 CTTTTCTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
13 6 0.21
14 2 0.07
15 12 0.41
16 2 0.07
17 7 0.24
ACGTcount: A:0.00, C:0.53, G:0.08, T:0.39
Consensus pattern (15 bp):
CCTCTCTCCTCCTGG
Found at i:26190292 original size:81 final size:81
Alignment explanation
Indices: 26190164--26190315 Score: 227
Period size: 81 Copynumber: 1.9 Consensus size: 81
26190154 CCTTCGAGCA
* *
26190164 TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTCCGTCCTAGCTTCTTCTTCCTCCTCTCT
1 TCCTCCTCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTCCGTCCTAGCTTCTTCCTCCTCCTCTCT
26190229 CCTCCTGGCCTCTTCT
66 CCTCCTGGCCTCTTCT
* * *
26190245 TCCTCCTCCTCTCTCCTTCTGGCCTCCTTTTCTTCTCTT-C-TCTTAGCTTCTTCCTCTTCCTCT
1 TCCTCCTCCTCTCTCCTTCTGGCCTCCTCTTC--CTCTTCCGTCCTAGCTTCTTCCTCCTCCTCT
26190308 CTCCTCCT
64 CTCCTCCT
26190316 CTTAGCTTCC
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
81 58 0.91
82 1 0.02
83 5 0.08
ACGTcount: A:0.01, C:0.47, G:0.06, T:0.45
Consensus pattern (81 bp):
TCCTCCTCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTCCGTCCTAGCTTCTTCCTCCTCCTCTCT
CCTCCTGGCCTCTTCT
Found at i:26190354 original size:51 final size:54
Alignment explanation
Indices: 26190240--26190450 Score: 274
Period size: 51 Copynumber: 4.0 Consensus size: 54
26190230 CTCCTGGCCT
* * *
26190240 CTTCTTCCTCCTCCTCTCTCCTTCTGGCCTCCT-TTTCT-TCT-CTTCTCTTAG
1 CTTCTTCCTCTTCCTCTCTCCTTCTGGCTTCCTCTTCCTCTCTCCTTCTCTTAG
*
26190291 CTTCTTCCTCTTCCTCTCTCCTCCTCTTAGCTTCCTCTTCCTCTCTCCTTCTCTTAG
1 CTTCTTCCTCTTCCTCTCTCCT--TC-TGGCTTCCTCTTCCTCTCTCCTTCTCTTAG
* *
26190348 CTTCTTCCTCTTCCTCTCTCCTTCTGGCCTCCT-TTTCT-TCT-CTTCTCTTAG
1 CTTCTTCCTCTTCCTCTCTCCTTCTGGCTTCCTCTTCCTCTCTCCTTCTCTTAG
*
26190399 CTTCTTCCTCTTCCTCTCTCCTTCTGGCTTCCTCTTCTTCT-TCCCTTCTCTT
1 CTTCTTCCTCTTCCTCTCTCCTTCTGGCTTCCTCTTCCTCTCT-CCTTCTCTT
26190451 TTGGGCCTCT
Statistics
Matches: 140, Mismatches: 10, Indels: 17
0.84 0.06 0.10
Matches are distributed among these distances:
51 63 0.45
52 7 0.05
53 7 0.05
54 22 0.16
55 6 0.04
56 3 0.02
57 32 0.23
ACGTcount: A:0.02, C:0.44, G:0.05, T:0.50
Consensus pattern (54 bp):
CTTCTTCCTCTTCCTCTCTCCTTCTGGCTTCCTCTTCCTCTCTCCTTCTCTTAG
Found at i:26190360 original size:81 final size:77
Alignment explanation
Indices: 26190138--26190361 Score: 185
Period size: 81 Copynumber: 2.8 Consensus size: 77
26190128 CTTGTAGCTC
* * *
26190138 CCTCTTCCTCT-TCTCTCCT-TCGAGCATCCTCTTCCTCTCTCCTTCTGGCCT-CCTCTTCCTCT
1 CCTCTTCCTCTCTC-CTCCTCTCTAGCTTCCTCTTCCTCTCTCCTTCT---CTGCTTCTTCCTCT
26190200 TCCGTCCTAGCTTCTT
62 TCCGTCCTAGCTTCTT
* * * * *
26190216 CTTCCTCCTCTCTCCTCCTGGCCTCT-TCTTCCTCCTCCTCTCTCCTTCTGGCCTCCTT-TTCTT
1 CCTCTTCCTCTCTCCTCCT---CTCTAGCTTCCTCTTCCTCTCTCCTTCT---CTGCTTCTTC--
*
26190279 CTCTT-C-TCTTAGCTTCTT
58 CTCTTCCGTCCTAGCTTCTT
26190297 CCTCTTCCTCTCTCCTCCTCT-TAGCTTCCTCTTCCTCTCTCCTTCTCTTAGCTTCTTCCTCTTC
1 CCTCTTCCTCTCTCCTCCTCTCTAGCTTCCTCTTCCTCTCTCCTTCTC-T-GCTTCTTCCTCTTC
26190361 C
64 C
26190362 TCTCTCCTTC
Statistics
Matches: 120, Mismatches: 13, Indels: 27
0.75 0.08 0.17
Matches are distributed among these distances:
75 1 0.01
76 6 0.05
77 5 0.04
78 40 0.33
79 2 0.02
81 56 0.47
82 5 0.04
83 5 0.04
ACGTcount: A:0.03, C:0.46, G:0.06, T:0.45
Consensus pattern (77 bp):
CCTCTTCCTCTCTCCTCCTCTCTAGCTTCCTCTTCCTCTCTCCTTCTCTGCTTCTTCCTCTTCCG
TCCTAGCTTCTT
Found at i:26190435 original size:81 final size:81
Alignment explanation
Indices: 26190321--26190519 Score: 214
Period size: 81 Copynumber: 2.5 Consensus size: 81
26190311 CTCCTCTTAG
*
26190321 CTTCCTCTTCCTCTCTCCTTCT--CTTAGCTTCTTCCTCTT-CCTCTCTCCTTCT-GGCCTCCTT
1 CTTCCTCTTCCTCTCTCCTTCTGGCTT--CCTCTTCCTCTTCCCT-TCT-CTTCTGGGCCT-CTT
**
26190382 -TTCTTCTCTTC-TCTTAGCTT
61 CTTCCGCT-TTCTTCTTAGCTT
* *
26190402 CTTCCTCTTCCTCTCTCCTTCTGGCTTCCTCTTCTTCTTCCCTTCTCTTTTGGGCCTCTTCTTCC
1 CTTCCTCTTCCTCTCTCCTTCTGGCTTCCTCTTCCTCTTCCCTTCTCTTCTGGGCCTCTTCTTCC
26190467 GCTTTCTTCTTAGCTT
66 GCTTTCTTCTTAGCTT
* * *
26190483 CTTCCTCCT-CTCTTCTCTTTCTGGCCTCCTCTTCCTC
1 CTTCCTCTTCCTC-TCTCCTTCTGGCTTCCTCTTCCTC
26190520 CTCTTTCCTC
Statistics
Matches: 102, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
80 13 0.13
81 83 0.81
82 3 0.03
83 3 0.03
ACGTcount: A:0.02, C:0.42, G:0.07, T:0.50
Consensus pattern (81 bp):
CTTCCTCTTCCTCTCTCCTTCTGGCTTCCTCTTCCTCTTCCCTTCTCTTCTGGGCCTCTTCTTCC
GCTTTCTTCTTAGCTT
Found at i:26190438 original size:108 final size:106
Alignment explanation
Indices: 26190188--26190450 Score: 342
Period size: 108 Copynumber: 2.5 Consensus size: 106
26190178 CCTTCTGGCC
* * * * *
26190188 TCCTCTTCCTCT-TCCGTCCTAGCTTCTTCTTCCTCCTCTCTCCTCCTGGCCTCTTCTTCCTCCT
1 TCCTCTTCCTCTCTCC-TTCTAGCTTCCTCTTCTTCCTCTCTCCTTCT--CTTCTTCTTCCTCCT
26190252 CCTCTCTCCTTCTGGCCTCCTTTTCTTCTCTTCTCTTAGCTTCT
63 CCTCTCTCCTTCTGGCCTCCTTTTCTTCTCTTCTCTTAGCTTCT
26190296 TCCTCTTCCTCTCTCCTCCTCTTAGCTT-C-C-TCTTCCTCTCTCCTTCTCTTAGCTTCTTCCTC
1 TCCTCTTCCTCTCTCCT--TC-TAGCTTCCTCTTCTTCCTCTCTCCTTCTCTT--CTTCTTCCTC
*
26190358 TTCCTCTCTCCTTCTGGCCTCCTTTTCTTCTCTTCTCTTAGCTTCT
61 CTCCTCTCTCCTTCTGGCCTCCTTTTCTTCTCTTCTCTTAGCTTCT
*
26190404 TCCTCTTCCTCTCTCCTTCTGGCTTCCTCTTCTT-CT-TC-CCTTCTCTT
1 TCCTCTTCCTCTCTCCTTCTAGCTTCCTCTTCTTCCTCTCTCCTTCTCTT
26190451 TTGGGCCTCT
Statistics
Matches: 139, Mismatches: 7, Indels: 21
0.83 0.04 0.13
Matches are distributed among these distances:
105 14 0.10
106 7 0.05
107 3 0.02
108 104 0.75
109 4 0.03
110 1 0.01
111 6 0.04
ACGTcount: A:0.02, C:0.44, G:0.05, T:0.48
Consensus pattern (106 bp):
TCCTCTTCCTCTCTCCTTCTAGCTTCCTCTTCTTCCTCTCTCCTTCTCTTCTTCTTCCTCCTCCT
CTCTCCTTCTGGCCTCCTTTTCTTCTCTTCTCTTAGCTTCT
Found at i:26190447 original size:24 final size:24
Alignment explanation
Indices: 26190351--26190435 Score: 91
Period size: 24 Copynumber: 3.4 Consensus size: 24
26190341 CTCTTAGCTT
26190351 CTTCCTCTTCCTCTCTCCTTCTGG
1 CTTCCTCTTCCTCTCTCCTTCTGG
* * * *
26190375 CCTCCTTTTCTTCTCTTCTCTTAGCT-T
1 CTTCCTCTTCCTCTC-TC-CTT--CTGG
26190402 CTTCCTCTTCCTCTCTCCTTCTGG
1 CTTCCTCTTCCTCTCTCCTTCTGG
26190426 CTTCCTCTTC
1 CTTCCTCTTC
26190436 TTCTTCCCTT
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
23 2 0.04
24 22 0.46
25 5 0.10
26 5 0.10
27 12 0.25
28 2 0.04
ACGTcount: A:0.01, C:0.44, G:0.06, T:0.49
Consensus pattern (24 bp):
CTTCCTCTTCCTCTCTCCTTCTGG
Found at i:26190462 original size:108 final size:107
Alignment explanation
Indices: 26190242--26190450 Score: 343
Period size: 108 Copynumber: 2.0 Consensus size: 107
26190232 CCTGGCCTCT
26190242 TCTTCCTCCTCCTCTCTCCTTCTGGCCTCCTTTTCTTCTCTTCTCTTAGCTTCTTCCTCTTCCTC
1 TCTTCCTCCTCCTCTCTCCTTCTGGCCTCCTTTTCTTCTCTTCTCTTAGCTTCTTCCTCTTCCTC
*
26190307 TCTCCTCCTCTTAGCTTCCTCTTCCTCTCTCCTTCTCTTAGCT
66 TCTCCT-CTCTTAGCTTCCTCTTCCTCTCTCCTTCTCTTAGCC
*
26190350 TCTTCCTCTTCCTCTCTCCTTCTGGCCTCCTTTTCTTCTCTTCTCTTAGCTTCTTCCTCTTCCTC
1 TCTTCCTCCTCCTCTCTCCTTCTGGCCTCCTTTTCTTCTCTTCTCTTAGCTTCTTCCTCTTCCTC
* *
26190415 TCTCCT-TC-TGGCTTCCTCTTCTTCT-TCCCTTCTCTT
66 TCTCCTCTCTTAGCTTCCTCTTCCTCTCT-CCTTCTCTT
26190451 TTGGGCCTCT
Statistics
Matches: 97, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
104 1 0.01
105 24 0.25
106 2 0.02
108 70 0.72
ACGTcount: A:0.02, C:0.44, G:0.05, T:0.50
Consensus pattern (107 bp):
TCTTCCTCCTCCTCTCTCCTTCTGGCCTCCTTTTCTTCTCTTCTCTTAGCTTCTTCCTCTTCCTC
TCTCCTCTCTTAGCTTCCTCTTCCTCTCTCCTTCTCTTAGCC
Found at i:26190485 original size:24 final size:24
Alignment explanation
Indices: 26190432--26190486 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
26190422 CTGGCTTCCT
*
26190432 CTTCTTCTTCCCTTCTCTTTTGGG
1 CTTCTTCTTCCCTTCTCTTTTGAG
*
26190456 CCTCTTCTTCCGCTT-TCTTCTT-AG
1 CTTCTTCTTCC-CTTCTCTT-TTGAG
26190480 CTTCTTC
1 CTTCTTC
26190487 CTCCTCTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 21 0.81
25 5 0.19
ACGTcount: A:0.02, C:0.36, G:0.09, T:0.53
Consensus pattern (24 bp):
CTTCTTCTTCCCTTCTCTTTTGAG
Found at i:26200257 original size:114 final size:114
Alignment explanation
Indices: 26200054--26200460 Score: 636
Period size: 114 Copynumber: 3.6 Consensus size: 114
26200044 AACTATGCAA
* * *
26200054 TTCCACTGCAGTTCACATACACGTGGCACTAATAACATCTAAATGTAATTAGAATCGATCGCAAA
1 TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
*
26200119 GTGATTTGG-TGATGAGTCCTTTAACCGTCAACTATGCTATTAACAAAGG
66 TTGA-TTGGATGATGAGTCCTTTAACCGTCAACTATGCTATTAACAAAGG
*
26200168 TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCCAAATGTAATTAGAATCGATCGCAAA
1 TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
*
26200233 TTGATTGGATGATGAGTCCCTTAACCGTCAACTATGCTATTAACAAAGG
66 TTGATTGGATGATGAGTCCTTTAACCGTCAACTATGCTATTAACAAAGG
* *
26200282 TTCCACTGCAGTCCACATACACGTGGCGCTAACATCATCTAAATGTAATTAGAATCTATCGCAAA
1 TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
* * * *
26200347 TCGATTGGATGATGAGTCCTTTAACCGTCAATTATGCTATGAACAAAGA
66 TTGATTGGATGATGAGTCCTTTAACCGTCAACTATGCTATTAACAAAGG
* * * * * *
26200396 TTCAACTGCAGTCCACATACATGCGGCGCTAACAACATCTAAATGTAGTTACAATCGATCTCAAA
1 TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
26200461 ATCTTTTAAT
Statistics
Matches: 270, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
113 4 0.01
114 266 0.99
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.27
Consensus pattern (114 bp):
TTCCACTGCAGTCCACATACACGTGGCGCTAACAACATCTAAATGTAATTAGAATCGATCGCAAA
TTGATTGGATGATGAGTCCTTTAACCGTCAACTATGCTATTAACAAAGG
Found at i:26204694 original size:16 final size:17
Alignment explanation
Indices: 26204661--26204694 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
26204651 TGAGGGTGAT
26204661 AGGAATAATGGTGAAGA
1 AGGAATAATGGTGAAGA
*
26204678 AGGAATAGTGG-GAAGA
1 AGGAATAATGGTGAAGA
26204694 A
1 A
26204695 AAGGAAAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.47, C:0.00, G:0.38, T:0.15
Consensus pattern (17 bp):
AGGAATAATGGTGAAGA
Found at i:26205146 original size:16 final size:15
Alignment explanation
Indices: 26205125--26205158 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
26205115 ATTTCAATTA
26205125 ATAATAAATAATAAAT
1 ATAATAAAT-ATAAAT
*
26205141 ATAATAAATTTAAAT
1 ATAATAAATATAAAT
26205156 ATA
1 ATA
26205159 CTTAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
ATAATAAATATAAAT
Found at i:26205656 original size:12 final size:12
Alignment explanation
Indices: 26205639--26205668 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26205629 GTCTTTAAAC
26205639 TGTATATTATTT
1 TGTATATTATTT
26205651 TGTATATTATTT
1 TGTATATTATTT
*
26205663 TATATA
1 TGTATA
26205669 ATATAATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
TGTATATTATTT
Found at i:26205991 original size:18 final size:17
Alignment explanation
Indices: 26205964--26206002 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
26205954 TAAATTTATT
26205964 ATTTATTATTATATTTA
1 ATTTATTATTATATTTA
*
26205981 ATTTAATTATTCTATTTA
1 ATTT-ATTATTATATTTA
26205999 ATTT
1 ATTT
26206003 TAAAAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTATTATTATATTTA
Found at i:26208008 original size:30 final size:30
Alignment explanation
Indices: 26207974--26208041 Score: 127
Period size: 30 Copynumber: 2.2 Consensus size: 30
26207964 TTGAGGATGG
26207974 GAAATAGATTGATCAAGAATATTGAAATCT
1 GAAATAGATTGATCAAGAATATTGAAATCT
26208004 GAAATAGATTGATCAAGAATATTGAAATCT
1 GAAATAGATTGATCAAGAATATTGAAATCT
26208034 GAACATAG
1 GAA-ATAG
26208042 TTTATTAGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 33 0.89
31 4 0.11
ACGTcount: A:0.47, C:0.07, G:0.18, T:0.28
Consensus pattern (30 bp):
GAAATAGATTGATCAAGAATATTGAAATCT
Found at i:26214913 original size:11 final size:11
Alignment explanation
Indices: 26214893--26214939 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
26214883 AACCTAAACT
26214893 AAAAATGAAAAG
1 AAAAA-GAAAAG
26214905 AAAAAGAAAAG
1 AAAAAGAAAAG
* *
26214916 GAGAAGAAAAG
1 AAAAAGAAAAG
*
26214927 -AAATGAAAAG
1 AAAAAGAAAAG
26214937 AAA
1 AAA
26214940 TAAAACCCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
10 8 0.27
11 17 0.57
12 5 0.17
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.04
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:26223085 original size:13 final size:13
Alignment explanation
Indices: 26223067--26223091 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26223057 CTCGGCAGGG
26223067 ACACGCCCGTGTA
1 ACACGCCCGTGTA
26223080 ACACGCCCGTGT
1 ACACGCCCGTGT
26223092 GCGATTACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTA
Found at i:26224957 original size:18 final size:18
Alignment explanation
Indices: 26224934--26224970 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26224924 ACTCTTTATG
26224934 ATTGTGATAAAATCAGGA
1 ATTGTGATAAAATCAGGA
26224952 ATTGTGATAAAATCAGGA
1 ATTGTGATAAAATCAGGA
26224970 A
1 A
26224971 CTCTTTTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.22, T:0.27
Consensus pattern (18 bp):
ATTGTGATAAAATCAGGA
Found at i:26237434 original size:48 final size:47
Alignment explanation
Indices: 26237367--26237727 Score: 427
Period size: 48 Copynumber: 7.5 Consensus size: 47
26237357 AATACCAATA
* * * *
26237367 CCATGTCCGAAACATGGTCTTACATGAGTC-CACATATCATCGCCAATG
1 CCATGTCCCAGACATGGTCTTACATG-G-CACATATATCATCGCCGATG
* *
26237415 CCACGTCCCAGACATGGTCTTACAATGGCACATATATCATCGCCAATG
1 CCATGTCCCAGACATGGTCTTAC-ATGGCACATATATCATCGCCGATG
* * *
26237463 CCATGTCCCAGACATAGTCTTACACTGGCACATATATCATTGTCGATG
1 CCATGTCCCAGACATGGTCTTACA-TGGCACATATATCATCGCCGATG
* * * * *
26237511 CCATATCCCAGACATGGTCTTAAACTGGCACATACATTATCGTCGATG
1 CCATGTCCCAGACATGGTCTTACA-TGGCACATATATCATCGCCGATG
* * *
26237559 CCATGTCCCAAACATGGTCTTACACTGGCACATACATTATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACA-TGGCACATATATCATCGCCGATG
* * ** *
26237607 CCATGTCCCAGATATGGTTTTACACAAGCACATATATCATTGCCGATG
1 CCATGTCCCAGACATGGTCTTACA-TGGCACATATATCATCGCCGATG
*
26237655 CCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACA-TGGCACATATATCATCGCCGATG
*
26237703 CCATGTCCCATACATGGTCTTACAT
1 CCATGTCCCAGACATGGTCTTACAT
26237728 TGAATCTCAT
Statistics
Matches: 277, Mismatches: 33, Indels: 7
0.87 0.10 0.02
Matches are distributed among these distances:
47 2 0.01
48 272 0.98
49 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (47 bp):
CCATGTCCCAGACATGGTCTTACATGGCACATATATCATCGCCGATG
Found at i:26237638 original size:144 final size:144
Alignment explanation
Indices: 26237402--26237726 Score: 470
Period size: 144 Copynumber: 2.3 Consensus size: 144
26237392 GAGTCCACAT
* * * *
26237402 ATCATCGCCAATGCCACGTCCCAGACATGGTCTTACAATGGCACATATATCATCGCCAATGCCAT
1 ATCATCGCCGATGCCATGTCCCAAACATGGTCTTACAATGGCACATACATCATCGCCAATGCCAT
** *
26237467 GTCCCAGACATAGTCTTACACTGGCACATATATCATTGTCGATGCCATATCCCAGACATGGTCTT
66 GTCCCAGACATAGTCTTACACAAGCACATATATCATTGCCGATGCCATATCCCAGACATGGTCTT
*
26237532 AAACTGGCACATAC
131 AAACAGGCACATAC
* * * * *
26237546 ATTATCGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCACATACATTATCGCCGATGCCAT
1 ATCATCGCCGATGCCATGTCCCAAACATGGTCTTACAATGGCACATACATCATCGCCAATGCCAT
* * * *
26237611 GTCCCAGATATGGTTTTACACAAGCACATATATCATTGCCGATGCCATGTCCCAGACATGGTCTT
66 GTCCCAGACATAGTCTTACACAAGCACATATATCATTGCCGATGCCATATCCCAGACATGGTCTT
* *
26237676 ACACAGGCACATAT
131 AAACAGGCACATAC
*
26237690 ATCATCGCCGATGCCATGTCCCATACATGGTCTTACA
1 ATCATCGCCGATGCCATGTCCCAAACATGGTCTTACA
26237727 TTGAATCTCA
Statistics
Matches: 159, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
144 159 1.00
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (144 bp):
ATCATCGCCGATGCCATGTCCCAAACATGGTCTTACAATGGCACATACATCATCGCCAATGCCAT
GTCCCAGACATAGTCTTACACAAGCACATATATCATTGCCGATGCCATATCCCAGACATGGTCTT
AAACAGGCACATAC
Found at i:26248096 original size:115 final size:115
Alignment explanation
Indices: 26247971--26248247 Score: 313
Period size: 115 Copynumber: 2.3 Consensus size: 115
26247961 TGAATATTAA
* * * * *
26247971 TTTTTTGTTTTTTATTTACTTAACGAATGGTCCTATTGTCATT-TTTTTTTGAGATTTTGGTATT
1 TTTTTTGTTTTTTATTTACTTAACAAATAGTCCCATTGTCATTATTTTTTTGAGAATTT-ATATT
* *
26248035 GTAGAAAGGGTGTTAGGAAGAAAGGAAGCAAGTATGTTTTCTTTTAATTTT
65 GTAGAAAGAGTGTTAGGAAGAAAGAAAGCAAGTATGTTTTCTTTTAATTTT
** *
26248086 TTTTTTGTTTTTTATTTACTTAACAAATAGTCCCATTGTGTTTATTTTTTTGAGAATTTATTTTG
1 TTTTTTGTTTTTTATTTACTTAACAAATAGTCCCATTGTCATTATTTTTTTGAGAATTTATATTG
* * * *
26248151 TAGGAAGAGTGTTTGGAAGAAAGAAAGCAAGTATGTTTGTGTTTTTTTTAACATTAT
66 TAGAAAGAGTGTTAGGAAGAAAGAAAGCAAGTA----TGT-TTTCTTTT-A-ATTTT
* * *
26248208 TTTTTTGTTTTTTTATTTACTTAATAGATGGTCCCATTGT
1 TTTTTTG-TTTTTTATTTACTTAACAAATAGTCCCATTGT
26248248 GTTGAATTTG
Statistics
Matches: 136, Mismatches: 17, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
115 71 0.52
116 14 0.10
119 3 0.02
120 7 0.05
121 1 0.01
122 11 0.08
123 29 0.21
ACGTcount: A:0.25, C:0.06, G:0.18, T:0.51
Consensus pattern (115 bp):
TTTTTTGTTTTTTATTTACTTAACAAATAGTCCCATTGTCATTATTTTTTTGAGAATTTATATTG
TAGAAAGAGTGTTAGGAAGAAAGAAAGCAAGTATGTTTTCTTTTAATTTT
Found at i:26248262 original size:123 final size:116
Alignment explanation
Indices: 26247966--26248273 Score: 291
Period size: 115 Copynumber: 2.6 Consensus size: 116
26247956 GGTTTTGAAT
* * * * * * * *
26247966 ATTAATTTTTTGTTTTTTATTTACTTAACGAATGGTCCTATTGTCATT--TTTTTTTGAGA-TTT
1 ATTATTTTTTTGTTTTTTATTTACTTAACAAATAGTCCCATTGT-GTTGAATTTGTTGAGAGATT
* * * *
26248028 TGGTATTGTAGAAAGGGTGTTAGGAAGAAAGGAAGCAAGTATGTTTTCTTTTA
65 T-ATTTTGTAGAAAGAGTGTTAGGAAGAAAGAAAGCAAGTATGTTTTCTTTTA
* * * *
26248081 ATTTTTTTTTTGTTTTTTATTTACTTAACAAATAGTCCCATTGTGTTTATTTTTTTGAGA-ATTT
1 ATTATTTTTTTGTTTTTTATTTACTTAACAAATAGTCCCATTGTGTTGAATTTGTTGAGAGATTT
* * *
26248145 ATTTTGTAGGAAGAGTGTTTGGAAGAAAGAAAGCAAGTATGTTTGTGTTTTTTTTAA
66 ATTTTGTAGAAAGAGTGTTAGGAAGAAAGAAAGCAAGTA----TGT-TTTCTTTT-A
* * * *
26248202 CATTATTTTTTTGTTTTTTTATTTACTTAATAGATGGTCCCATTGTGTTGAATTTGTTGAGAGTT
1 -ATTATTTTTTTG-TTTTTTATTTACTTAACAAATAGTCCCATTGTGTTGAATTTGTTGAGAGAT
26248267 TTATTTT
64 TTATTTT
26248274 CTATTTTCGT
Statistics
Matches: 160, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
114 2 0.01
115 72 0.45
116 14 0.09
119 3 0.02
120 7 0.04
121 1 0.01
122 11 0.07
123 42 0.26
124 8 0.05
ACGTcount: A:0.25, C:0.06, G:0.18, T:0.52
Consensus pattern (116 bp):
ATTATTTTTTTGTTTTTTATTTACTTAACAAATAGTCCCATTGTGTTGAATTTGTTGAGAGATTT
ATTTTGTAGAAAGAGTGTTAGGAAGAAAGAAAGCAAGTATGTTTTCTTTTA
Found at i:26260200 original size:3 final size:3
Alignment explanation
Indices: 26260188--26260227 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
26260178 TCTAGTGTTA
* *
26260188 TAT T-T TAT TAT TAT TAT TAT TAC TAC TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
26260228 AAGAGCATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:26260463 original size:20 final size:20
Alignment explanation
Indices: 26260438--26260475 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
26260428 AGTAATTTAA
*
26260438 AAAATAAAATTAAAAGAAAT
1 AAAATAAAATAAAAAGAAAT
26260458 AAAATAAAATAAAAAGAA
1 AAAATAAAATAAAAAGAA
26260476 CTGAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (20 bp):
AAAATAAAATAAAAAGAAAT
Found at i:26273336 original size:24 final size:24
Alignment explanation
Indices: 26273308--26273354 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26273298 CAATTAAAAC
26273308 GTGATTGATAATTAATCATTAATG
1 GTGATTGATAATTAATCATTAATG
* *
26273332 GTGATTGGTTATTAATCATTAAT
1 GTGATTGATAATTAATCATTAAT
26273355 TTTTTTTATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (24 bp):
GTGATTGATAATTAATCATTAATG
Found at i:26273736 original size:13 final size:13
Alignment explanation
Indices: 26273712--26273745 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
26273702 TTTTAGTTAT
26273712 TATATAATTGTGTG
1 TATAT-ATTGTGTG
26273726 TATATATTGTGTG
1 TATATATTGTGTG
26273739 TATATAT
1 TATATAT
26273746 ATTATATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (13 bp):
TATATATTGTGTG
Found at i:26275680 original size:26 final size:26
Alignment explanation
Indices: 26275651--26275732 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
26275641 TGGTACAAAT
*
26275651 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26275677 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26275703 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26275729 TGAT
1 TGAT
26275733 GGGAATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26276832 original size:51 final size:51
Alignment explanation
Indices: 26276756--26276857 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
26276746 GGTGTGGTTG
26276756 GCCGAATATTGTAAGGGGTTAATACGTAGTTTGTATTTGAATAGTTAGATT
1 GCCGAATATTGTAAGGGGTTAATACGTAGTTTGTATTTGAATAGTTAGATT
26276807 GCCGAATATTGTAAGGGGTTAATACGTAGTTTGTATTTGAATAGTTAGATT
1 GCCGAATATTGTAAGGGGTTAATACGTAGTTTGTATTTGAATAGTTAGATT
26276858 AACGTGTTAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.29, C:0.06, G:0.25, T:0.39
Consensus pattern (51 bp):
GCCGAATATTGTAAGGGGTTAATACGTAGTTTGTATTTGAATAGTTAGATT
Found at i:26277431 original size:27 final size:25
Alignment explanation
Indices: 26277373--26277532 Score: 158
Period size: 27 Copynumber: 6.0 Consensus size: 25
26277363 AGGAAGCGTC
* *
26277373 CTGGTGGCTATGCCACAATTTATCTAAT
1 CTGGTGGCTCTGCCACAA--TATCT-GT
26277401 CTGGTGGCTCTGCCACATATATCTGT
1 CTGGTGGCTCTGCCACA-ATATCTGT
*
26277427 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAA-TATCTG-T
26277455 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTG-T
*
26277482 CTGGTGGCTCTGCCACAAGATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG--T
* * *
26277509 CTGGTGACTTTGTCACAATATCTG
1 CTGGTGGCTCTGCCACAATATCTG
26277533 GCAGCCTCGC
Statistics
Matches: 115, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
26 8 0.07
27 88 0.77
28 18 0.16
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (25 bp):
CTGGTGGCTCTGCCACAATATCTGT
Found at i:26277469 original size:54 final size:54
Alignment explanation
Indices: 26277370--26277532 Score: 231
Period size: 54 Copynumber: 3.0 Consensus size: 54
26277360 TGGAGGAAGC
*
26277370 GTCCTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATCT
26277425 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * * * *
26277479 GTTCTGGTGGCTCTGCCACAA-GATCTGTATCTGGTGACTTTGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCT
26277532 G
1 G
26277533 GCAGCCTCGC
Statistics
Matches: 100, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
53 12 0.12
54 67 0.67
55 21 0.21
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:26277491 original size:81 final size:81
Alignment explanation
Indices: 26277373--26277532 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 81
26277363 AGGAAGCGTC
* * *
26277373 CTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGGCT
1 CTGGTGGCTATGCCACAATATATCTAATCTGGTGGCTCTGCCACA-AGATCTGTACCTGGTGACT
26277437 ATGCCACAATTATCTGAT
65 ATGCCACAA-TATCTGAT
* ** * *
26277455 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACAAGATCTGTATCTGGTGACTT
1 CTGGTGGCTATGCCACAATATATCTAATCTGGTGGCTCTGCCACAAGATCTGTACCTGGTGACTA
*
26277519 TGTCACAATATCTG
66 TGCCACAATATCTG
26277533 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 13 0.19
81 40 0.59
82 15 0.22
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATATATCTAATCTGGTGGCTCTGCCACAAGATCTGTACCTGGTGACTA
TGCCACAATATCTGAT
Found at i:26281151 original size:11 final size:11
Alignment explanation
Indices: 26281135--26281168 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
26281125 CGCATCTAGT
26281135 TTTGTTCTTGA
1 TTTGTTCTTGA
*
26281146 TTTGTTCTTGC
1 TTTGTTCTTGA
*
26281157 TTTATTCTTGA
1 TTTGTTCTTGA
26281168 T
1 T
26281169 GATTTGACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.12, G:0.15, T:0.65
Consensus pattern (11 bp):
TTTGTTCTTGA
Found at i:26289549 original size:37 final size:37
Alignment explanation
Indices: 26289499--26289577 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26289489 TTATTACGAA
* * *
26289499 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26289536 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26289573 GTCTT
1 GTCTT
26289578 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26289774 original size:47 final size:47
Alignment explanation
Indices: 26289698--26289871 Score: 215
Period size: 47 Copynumber: 3.7 Consensus size: 47
26289688 CTTTGGGACT
* * * * *
26289698 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * *
26289745 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* *
26289792 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * *
26289839 TATCTCATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATACACT-TTCACATTCATCACAT
26289872 AGAATCCTAA
Statistics
Matches: 114, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 113 0.99
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:26289860 original size:94 final size:94
Alignment explanation
Indices: 26289696--26289871 Score: 237
Period size: 94 Copynumber: 1.9 Consensus size: 94
26289686 CCCTTTGGGA
* * * * *
26289696 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
26289761 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATCCATCACATCGGCCATTAGGC
* * * * *
26289790 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
26289854 TGTTCACATCCATCACAT
66 T-TTCACATCCATCACAT
26289872 AGAATCCTAA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
93 1 0.01
94 69 0.99
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATCCATCACATCGGCCATTAGGC
Found at i:26294356 original size:18 final size:18
Alignment explanation
Indices: 26294325--26294376 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
26294315 AATTTATATG
**
26294325 AAAATCCCAAAAGGATTT
1 AAAATCCCTGAAGGATTT
26294343 AAAA-CCCTTGAAGGATTT
1 AAAATCCC-TGAAGGATTT
26294361 AAAATCCCTGAAGGAT
1 AAAATCCCTGAAGGAT
26294377 ATAGAGTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 3 0.10
18 24 0.80
19 3 0.10
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.23
Consensus pattern (18 bp):
AAAATCCCTGAAGGATTT
Found at i:26296873 original size:16 final size:18
Alignment explanation
Indices: 26296837--26296873 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
26296827 TAGTGTTTTG
*
26296837 TATTTTGTTATAGTTATT
1 TATTTTGTTATAGTAATT
26296855 TATTTTGTTA-A-TAATT
1 TATTTTGTTATAGTAATT
26296871 TAT
1 TAT
26296874 GGGATTAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 10 0.56
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (18 bp):
TATTTTGTTATAGTAATT
Found at i:26296999 original size:108 final size:104
Alignment explanation
Indices: 26296854--26297088 Score: 303
Period size: 108 Copynumber: 2.2 Consensus size: 104
26296844 TTATAGTTAT
* * *
26296854 TTATTTTGTTAATAATTTATGGGATTAGGTTACAAATTGTTAGTGTTTAGTGGTTTAGGGTATTG
1 TTATTTTGTTAGTAATTTAT-GGACTAGGTTACAAATTGTTAGTGTTTAGTGGTTTAGGGTATTA
26296919 TGACTTTTTAGCAATGTA-ATTTTTTTACAAAATAATTTTATAG
65 TGACTTTTTAGCAATGTATATTTTTTTA-AAAA-AA--TTATAG
* *
26296962 TTATTTTGTTAGTAATTTAT-GACTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATT
1 TTATTTTGTTAGTAATTTATGGACTAGG-T-TACAAATTGTTAGTGTTTAGTGGTTTAGGGTATT
* * *
26297026 ATGATTTTTTAGTAATGTATTTTTTTTTAAAAAAATTATAG
64 ATGACTTTTTAGCAATGTATATTTTTTTAAAAAAATTATAG
26297067 TTATTTTGTGTTAGTAATTTAT
1 TTA-TTT-TGTTAGTAATTTAT
26297089 AATTATAAAT
Statistics
Matches: 114, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
105 9 0.08
106 9 0.08
107 17 0.15
108 71 0.62
109 8 0.07
ACGTcount: A:0.29, C:0.02, G:0.17, T:0.52
Consensus pattern (104 bp):
TTATTTTGTTAGTAATTTATGGACTAGGTTACAAATTGTTAGTGTTTAGTGGTTTAGGGTATTAT
GACTTTTTAGCAATGTATATTTTTTTAAAAAAATTATAG
Found at i:26297162 original size:15 final size:16
Alignment explanation
Indices: 26297135--26297166 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
26297125 GTGATTTTTT
26297135 TAATGTAATTTTTATA
1 TAATGTAATTTTTATA
26297151 TAATGTAA-TTTTATA
1 TAATGTAATTTTTATA
26297166 T
1 T
26297167 TATTATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TAATGTAATTTTTATA
Found at i:26297321 original size:21 final size:20
Alignment explanation
Indices: 26297274--26297321 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
26297264 GGTATGTTTC
* *
26297274 TAGTTTTTTTTTTTAATTCG
1 TAGTTTTTTTTTATAATTAG
*
26297294 TATGTTTTTTTTTATATTTAG
1 TA-GTTTTTTTTTATAATTAG
26297315 ATAGTTT
1 -TAGTTT
26297322 ATATGTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 2 0.09
21 19 0.83
22 2 0.09
ACGTcount: A:0.19, C:0.02, G:0.10, T:0.69
Consensus pattern (20 bp):
TAGTTTTTTTTTATAATTAG
Found at i:26299221 original size:33 final size:34
Alignment explanation
Indices: 26299184--26299278 Score: 90
Period size: 33 Copynumber: 2.9 Consensus size: 34
26299174 TTTATCTCAA
*
26299184 TACTCTGCTCCTTCCGGCCAGTATCCACCT-CTG
1 TACTCTACTCCTTCCGGCCAGTATCCACCTGCTG
* *
26299217 TACTCCACTCC-TCTAGAGCCA-TATCCA-CTGCTG
1 TACTCTACTCCTTC-CG-GCCAGTATCCACCTGCTG
* * *
26299250 TACTTTACTCCTCCCGGCCTGTATCCACC
1 TACTCTACTCCTTCCGGCCAGTATCCACC
26299279 GCCATTTTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
32 7 0.15
33 35 0.73
34 6 0.12
ACGTcount: A:0.16, C:0.42, G:0.13, T:0.29
Consensus pattern (34 bp):
TACTCTACTCCTTCCGGCCAGTATCCACCTGCTG
Found at i:26299292 original size:33 final size:33
Alignment explanation
Indices: 26299255--26299333 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
26299245 TGCTGTACTT
* *
26299255 TACTCCTCCCGGCCTGTATCCACCGCCATTTTC
1 TACTCCTCCCGGCCTGTATCCACCACCATATTC
*** * *
26299288 TACTCCTCCTATCCTGTATCTACCACCGTATTC
1 TACTCCTCCCGGCCTGTATCCACCACCATATTC
26299321 TACTCCTCCCGGC
1 TACTCCTCCCGGC
26299334 TCAAGTTCAT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.14, C:0.44, G:0.10, T:0.32
Consensus pattern (33 bp):
TACTCCTCCCGGCCTGTATCCACCACCATATTC
Found at i:26303521 original size:17 final size:19
Alignment explanation
Indices: 26303492--26303527 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
26303482 GCCTTGCTCG
26303492 TGTGGGCTCACAC-GCCCA
1 TGTGGGCTCACACGGCCCA
26303510 TGTGGG-TCACACGGCCCA
1 TGTGGGCTCACACGGCCCA
26303528 AATTGGCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.17, C:0.36, G:0.31, T:0.17
Consensus pattern (19 bp):
TGTGGGCTCACACGGCCCA
Found at i:26305189 original size:26 final size:27
Alignment explanation
Indices: 26305128--26305183 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
26305118 CCTACCAAGA
* * *
26305128 AGGCTCAACTAGTTGCACCTGTCAGGT
1 AGGCTCAACTAGTCGCACCTATCAGAT
26305155 AGGCTCAACTAGTCGC-CCTATCAGAT
1 AGGCTCAACTAGTCGCACCTATCAGAT
26305181 AGG
1 AGG
26305184 TGCAACCTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (27 bp):
AGGCTCAACTAGTCGCACCTATCAGAT
Found at i:26317929 original size:17 final size:17
Alignment explanation
Indices: 26317888--26317920 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26317878 ACAATAATAT
26317888 AAAATA-ATGATATGTAC
1 AAAATATAT-ATATGTAC
26317905 AAAATATATATATGTA
1 AAAATATATATATGTA
26317921 TATAATATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (17 bp):
AAAATATATATATGTAC
Found at i:26318172 original size:15 final size:16
Alignment explanation
Indices: 26318154--26318187 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
26318144 GTTTTTTTTT
26318154 ATTTTT-TTAAGACCA
1 ATTTTTGTTAAGACCA
*
26318169 ATTTTTGTTTAGACCA
1 ATTTTTGTTAAGACCA
26318185 ATT
1 ATT
26318188 ACAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (16 bp):
ATTTTTGTTAAGACCA
Found at i:26319727 original size:103 final size:104
Alignment explanation
Indices: 26319548--26319812 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
26319538 AACCGTTATT
* * * *
26319548 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
26319613 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
26319651 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
26319715 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
26319755 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
26319813 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:26320174 original size:30 final size:29
Alignment explanation
Indices: 26320140--26320204 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
26320130 TAATCCACCA
26320140 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
26320170 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
26320200 CCCAA
1 CCCAA
26320205 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:26320178 original size:31 final size:30
Alignment explanation
Indices: 26320147--26320204 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26320137 CCACCCAACT
26320147 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
26320177 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
26320205 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:26327215 original size:103 final size:104
Alignment explanation
Indices: 26327036--26327300 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
26327026 AACCGTTATT
* * * *
26327036 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
26327101 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
26327139 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
26327203 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
26327243 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
26327301 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:26327662 original size:30 final size:29
Alignment explanation
Indices: 26327628--26327692 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
26327618 TAATCCACCA
26327628 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
26327658 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
26327688 CCCAA
1 CCCAA
26327693 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:26327666 original size:31 final size:30
Alignment explanation
Indices: 26327635--26327692 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26327625 CCACCCAACT
26327635 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
26327665 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
26327693 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:26328926 original size:18 final size:16
Alignment explanation
Indices: 26328903--26328944 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
26328893 ATTTTTTTAG
26328903 TTTTTTTTTGCTGGAA
1 TTTTTTTTTGCTGGAA
26328919 TTTTTTTTTGCTGGAA
1 TTTTTTTTTGCTGGAA
26328935 TTTTGTTTTT
1 TTTT-TTTTT
26328945 TGTTATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 20 0.80
17 5 0.20
ACGTcount: A:0.10, C:0.05, G:0.17, T:0.69
Consensus pattern (16 bp):
TTTTTTTTTGCTGGAA
Found at i:26329259 original size:31 final size:30
Alignment explanation
Indices: 26329159--26329259 Score: 116
Period size: 31 Copynumber: 3.4 Consensus size: 30
26329149 CTTTTGGGTT
* * *
26329159 AAATGTAATTTTTAGAAAA-TTT-TGGGTTA
1 AAATGTAA-TTTAAGAAAAGTTTAGGGGTCA
*
26329188 AAATGTAATTTAAGAAAAGTTTAGGGGTCT
1 AAATGTAATTTAAGAAAAGTTTAGGGGTCA
* *
26329218 AAGTGAAATTTAAAGAAAAGTTTAGGGGTCA
1 AAATGTAATTT-AAGAAAAGTTTAGGGGTCA
26329249 AAATGTAATTT
1 AAATGTAATTT
26329260 TTTTTTATTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
28 9 0.15
29 11 0.18
30 13 0.22
31 27 0.45
ACGTcount: A:0.42, C:0.02, G:0.21, T:0.36
Consensus pattern (30 bp):
AAATGTAATTTAAGAAAAGTTTAGGGGTCA
Found at i:26329273 original size:11 final size:10
Alignment explanation
Indices: 26329256--26329284 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
26329246 TCAAAATGTA
26329256 ATTTTTTTTT
1 ATTTTTTTTT
26329266 ATTTTTTTTT
1 ATTTTTTTTT
26329276 ATTTTTTTT
1 ATTTTTTTT
26329285 GAAATTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (10 bp):
ATTTTTTTTT
Found at i:26330388 original size:41 final size:40
Alignment explanation
Indices: 26330327--26330412 Score: 109
Period size: 41 Copynumber: 2.1 Consensus size: 40
26330317 TATAATCACT
26330327 TTTTATTATATTTTCAATTTGTGTATTGTTTTAAGAATTG
1 TTTTATTATATTTTCAATTTGTGTATTGTTTTAAGAATTG
** * * * *
26330367 TTTTATTATCATTTTTTATTTGTTTCTTGTTTTAATATTTG
1 TTTTATTAT-ATTTTCAATTTGTGTATTGTTTTAAGAATTG
26330408 TTTTA
1 TTTTA
26330413 AATGTATTTG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 9 0.23
41 30 0.77
ACGTcount: A:0.21, C:0.03, G:0.09, T:0.66
Consensus pattern (40 bp):
TTTTATTATATTTTCAATTTGTGTATTGTTTTAAGAATTG
Found at i:26330803 original size:12 final size:12
Alignment explanation
Indices: 26330788--26330817 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26330778 ATTAATACCT
26330788 CACTAAACCAAC
1 CACTAAACCAAC
*
26330800 CACTAAACCAAT
1 CACTAAACCAAC
26330812 CACTAA
1 CACTAA
26330818 CTCCATCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.37, G:0.00, T:0.13
Consensus pattern (12 bp):
CACTAAACCAAC
Found at i:26331323 original size:3 final size:3
Alignment explanation
Indices: 26331266--26331306 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
26331256 TAGAAGGGAA
26331266 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
26331307 CTAATTTTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:26331423 original size:3 final size:3
Alignment explanation
Indices: 26331408--26331705 Score: 61
Period size: 3 Copynumber: 99.3 Consensus size: 3
26331398 TTTCACCTTT
* * * * * *
26331408 TTA TTA CTA TTA TTA TTAA CCTA CTA TTA TTA TTT TTA TCA ATA -TA
1 TTA TTA TTA TTA TTA TT-A -TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
26331454 GTA TTA TT- TTC TT- TT- TTA ATA TTA TTA TTA TTAA TGTA TCA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A T-TA TTA TTA
* * *
26331498 TTA TTT TCTA TT- TTA TTA TTA CTT- TTA TTA CTA TTG TT- TCTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA T-TA TTA
* *
26331543 TTA TTA TT- TTCA TTA CTTCCG TTA TTA TTA TCA TTA TT- TTA -TA TTA
1 TTA TTA TTA TT-A TTA -TT--A TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * ** *
26331589 TCA TTA ATA TGTCG TT- TGT- TTA TTA TTA TTA TTA TTT TTA ACA CTA
1 TTA TTA TTA T-T-A TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * **
26331635 TTA TTA TTA -TA TTTA CTT- TTT TTA ATA TTA TTA CCA TTA TT- TT-
1 TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * *
26331678 TTA AAA TTA TTA TTA CTA TTA TTT TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26331706 GATCTGTCCT
Statistics
Matches: 214, Mismatches: 53, Indels: 56
0.66 0.16 0.17
Matches are distributed among these distances:
2 29 0.14
3 159 0.74
4 21 0.10
5 5 0.02
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:26331479 original size:38 final size:40
Alignment explanation
Indices: 26331435--26331525 Score: 96
Period size: 41 Copynumber: 2.3 Consensus size: 40
26331425 AACCTACTAT
*
26331435 TATTATTTTTATCAA-TAT-AGTATTATTTTCTTTTTTAA
1 TATTATTTTTATCAAGTATCAGTATTATTTTCTATTTTAA
* * * * *
26331473 TATTATTATTATTAATGTATCATTGTTATTTTCTATTTTAT
1 TATTATTTTTATCAA-GTATCAGTATTATTTTCTATTTTAA
*
26331514 TATTACTTTTAT
1 TATTATTTTTAT
26331526 TACTATTGTT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
38 13 0.31
40 3 0.07
41 26 0.62
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (40 bp):
TATTATTTTTATCAAGTATCAGTATTATTTTCTATTTTAA
Found at i:26331572 original size:30 final size:29
Alignment explanation
Indices: 26331506--26331584 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 29
26331496 TGTTATTTTC
*
26331506 TATT-TTATTATTACTTTTATTACTATTGT
1 TATTATTATTATTA-TTTTATTACTATCGT
26331535 T-TCTATTATTATTATTTTCATTACT-TCCGT
1 TAT-TATTATTATTATTTT-ATTACTAT-CGT
*
26331565 TATTATTATCATTATTTTAT
1 TATTATTATTATTATTTTAT
26331585 ATTATCATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
28 1 0.02
29 9 0.21
30 32 0.74
31 1 0.02
ACGTcount: A:0.24, C:0.10, G:0.03, T:0.63
Consensus pattern (29 bp):
TATTATTATTATTATTTTATTACTATCGT
Found at i:26331680 original size:22 final size:24
Alignment explanation
Indices: 26331634--26331703 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 24
26331624 TTTTAACACT
* *
26331634 ATTATTATTA-TATTTACTTTTTTTA
1 ATTATTATTACCA-TTA-TTTTTTAA
26331659 A-TATTATTACCATTATTTTTTAAA
1 ATTATTATTACCATTATTTTTT-AA
*
26331683 ATTATTATTACTATTATTTTT
1 ATTATTATTACCATTATTTTT
26331704 ATGATCTGTC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
23 6 0.15
24 13 0.33
25 20 0.51
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (24 bp):
ATTATTATTACCATTATTTTTTAA
Found at i:26332091 original size:125 final size:126
Alignment explanation
Indices: 26331869--26332121 Score: 307
Period size: 125 Copynumber: 2.0 Consensus size: 126
26331859 ATTTTTCAAG
* * * * *
26331869 TAAAGGCAATATTCGGTACTTGAAAATTCGAGAAATCGTGTCCTAACGTACTGAGTTTCGGTTTT
1 TAAAGACAATATTCCGTACTTGAAAATTAGAGAAATCGTGTCCTAACGTACTGAGTTTCGATTTC
* * *
26331934 TCGTTTGATCTAAGTAACCGATTATCCTTTT-AAATTAAAATACATGAGTTTTAAATAAAA
66 CCGTTTGATCTAAATAACCGAATATCCTTTTAAAATTAAAATACATGAGTTTTAAATAAAA
* * * *
26331994 TAAAGACAATATTCCGTA-TTTAGAAATTAGAGTAGTCGTG-CCTTAACGTA-TGGGTTTCGATT
1 TAAAGACAATATTCCGTACTTGA-AAATTAGAGAAATCGTGTCC-TAACGTACTGAGTTTCGATT
* * * *
26332056 TCCCGTTTGATCTAAATATCTGAATATCCTTTTTAAAATTTAAATACATGAGTTTTAAATTAAA
64 TCCCGTTTGATCTAAATAACCGAATATCC-TTTTAAAATTAAAATACATGAGTTTTAAATAAAA
26332120 TA
1 TA
26332122 GAAGGCAAGC
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
124 38 0.35
125 41 0.38
126 29 0.27
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (126 bp):
TAAAGACAATATTCCGTACTTGAAAATTAGAGAAATCGTGTCCTAACGTACTGAGTTTCGATTTC
CCGTTTGATCTAAATAACCGAATATCCTTTTAAAATTAAAATACATGAGTTTTAAATAAAA
Found at i:26338022 original size:38 final size:38
Alignment explanation
Indices: 26337971--26338154 Score: 220
Period size: 38 Copynumber: 5.0 Consensus size: 38
26337961 AGCACTCGAT
*
26337971 ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
1 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
*
26338009 ATATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGG--
1 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
*
26338045 -----TCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTA
1 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
* *
26338078 ATATATCCGGGTTAAATCCCGCAAGCTTAGTGCTGGTA
1 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
* * **
26338116 TTATATCCGAGCTTAAAGTCCCGCAGGCTTTATGCTGGT
1 ATATATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGT
26338155 GACTGGATTC
Statistics
Matches: 126, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
31 29 0.23
38 73 0.58
39 6 0.05
40 18 0.14
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (38 bp):
ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
Found at i:26338052 original size:31 final size:31
Alignment explanation
Indices: 26338014--26338076 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
26338004 TGGTAATATA
*
26338014 TCCGGGTTAAATCCCGTAGGCTTCGTGCTGG
1 TCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
*
26338045 TCCGGGTTAAATCCCGCAGGCTTTGTGCTGG
1 TCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
26338076 T
1 T
26338077 AATATATCCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.13, C:0.25, G:0.32, T:0.30
Consensus pattern (31 bp):
TCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
Found at i:26338087 original size:69 final size:69
Alignment explanation
Indices: 26337976--26338114 Score: 233
Period size: 69 Copynumber: 2.0 Consensus size: 69
26337966 TCGATATATA
* * * *
26337976 TCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGTAGGCTTCGTG
1 TCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAAGCTTAGTG
26338041 CTGG
66 CTGG
*
26338045 TCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAATCCCGCAAGCTTAGTG
1 TCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAAGCTTAGTG
26338110 CTGG
66 CTGG
26338114 T
1 T
26338115 ATTATATCCG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (69 bp):
TCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAAGCTTAGTG
CTGG
Found at i:26340743 original size:21 final size:21
Alignment explanation
Indices: 26340718--26340782 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
26340708 TAGCCTCCGG
26340718 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
* * *
26340739 GCTTCAG-TTAGC-CTT-CGA
1 GCTTCCGTTTAGCACTTATGT
*
26340757 GCTGCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
26340778 GCTTC
1 GCTTC
26340783 AGTTAGATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 6 0.18
19 8 0.24
20 8 0.24
21 11 0.33
ACGTcount: A:0.14, C:0.26, G:0.22, T:0.38
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:26340746 original size:39 final size:39
Alignment explanation
Indices: 26340700--26340788 Score: 151
Period size: 39 Copynumber: 2.3 Consensus size: 39
26340690 GCTCTGATGA
* *
26340700 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGAGCTGCCGTTTAGCACTTATGT
*
26340739 GCTTCAGTTAGCCTTCGAGCTGCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGAGCTGCCGTTTAGCACTTATGT
26340778 GCTTCAGTTAG
1 GCTTCAGTTAG
26340789 ATTTCGGGCT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.15, C:0.26, G:0.24, T:0.36
Consensus pattern (39 bp):
GCTTCAGTTAGCCTCCGAGCTGCCGTTTAGCACTTATGT
Found at i:26342563 original size:15 final size:15
Alignment explanation
Indices: 26342543--26342588 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 15
26342533 ATATAAATAG
26342543 AAATAGAAATATAAT
1 AAATAGAAATATAAT
26342558 AAATAGAAATATAAT
1 AAATAGAAATATAAT
26342573 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
26342589 ATAGATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 17 0.59
16 1 0.03
17 11 0.38
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:26342576 original size:29 final size:29
Alignment explanation
Indices: 26342544--26342663 Score: 79
Period size: 29 Copynumber: 4.1 Consensus size: 29
26342534 TATAAATAGA
26342544 AATAGA-AATATAATAAATAGAAATATAAT
1 AATAGAGAA-ATAATAAATAGAAATATAAT
*
26342573 AATAGTAGAAAT-ATAAATAGATAA-ATAAA
1 AATAG-AGAAATAATAAATAGA-AATATAAT
* * * *
26342602 AATTAGATAAATAAT-AATAGTATTAGAAT
1 AA-TAGAGAAATAATAAATAGAAATATAAT
* * * *
26342631 AACAAAATAAAT-ATAAATAGAAACATAAT
1 AA-TAGAGAAATAATAAATAGAAATATAAT
26342660 AATA
1 AATA
26342664 ATAGCAATAA
Statistics
Matches: 70, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
28 4 0.06
29 54 0.77
30 10 0.14
31 2 0.03
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (29 bp):
AATAGAGAAATAATAAATAGAAATATAAT
Found at i:26342591 original size:44 final size:42
Alignment explanation
Indices: 26342507--26342623 Score: 123
Period size: 44 Copynumber: 2.7 Consensus size: 42
26342497 ATATATAAGA
* *
26342507 AAAATAAT-AAT-GAAAATAATATTAGTATATAAATAGAAATAG
1 AAAATAATAAATAGAAAATAATAATAG--TAGAAATAGAAATAG
*
26342549 AAATATAATAAATAGAAATATAATAATAGTAGAAATATAAATAG
1 AAA-ATAATAAATAGAAA-ATAATAATAGTAGAAATAGAAATAG
26342593 ATAAATAA-AAATTAGATAAATAATAATAGTA
1 A-AAATAATAAA-TAGA-AAATAATAATAGTA
26342624 TTAGAATAAC
Statistics
Matches: 65, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
42 3 0.05
43 8 0.12
44 37 0.57
45 8 0.12
46 9 0.14
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (42 bp):
AAAATAATAAATAGAAAATAATAATAGTAGAAATAGAAATAG
Found at i:26342608 original size:15 final size:14
Alignment explanation
Indices: 26342535--26342651 Score: 71
Period size: 15 Copynumber: 8.1 Consensus size: 14
26342525 ATATTAGTAT
*
26342535 ATAAATAGAAATAG
1 ATAAATAAAAATAG
26342549 A-AATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
26342564 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
26342578 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
26342593 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
26342608 ATAAATAATAATAG
1 ATAAATAAAAATAG
*
26342622 TATTAGAATAACAA-A-
1 -A-TA-AATAAAAATAG
*
26342637 ATAAATATAAATAG
1 ATAAATAAAAATAG
26342651 A
1 A
26342652 AACATAATAA
Statistics
Matches: 83, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
12 6 0.07
13 5 0.06
14 23 0.28
15 37 0.45
16 5 0.06
17 7 0.08
ACGTcount: A:0.64, C:0.01, G:0.09, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:26343051 original size:35 final size:32
Alignment explanation
Indices: 26342984--26343057 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 32
26342974 AAATTCCTAG
* *
26342984 TCAAATTGAAAGAGAAAAGAAAATAATTCAAT
1 TCAAATAGAAAGAGAAAAGAAAATAATCCAAT
*
26343016 TCAAATAGAAATAGGAAAAGAGAGAATAATCCAAT
1 TCAAATAGAAAGA-GAAAAGA-A-AATAATCCAAT
26343051 TCCAAAT
1 T-CAAAT
26343058 TAAAGTAGGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 11 0.31
33 7 0.20
34 1 0.03
35 11 0.31
36 5 0.14
ACGTcount: A:0.57, C:0.09, G:0.14, T:0.20
Consensus pattern (32 bp):
TCAAATAGAAAGAGAAAAGAAAATAATCCAAT
Found at i:26343159 original size:5 final size:5
Alignment explanation
Indices: 26343151--26343175 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26343141 TAATTAATTT
26343151 AATAA AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA
26343176 TTTCTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:26349644 original size:22 final size:22
Alignment explanation
Indices: 26349616--26349662 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
26349606 TGCGTAAGCA
26349616 TGGGGCGAATAAATTTTTAGGC
1 TGGGGCGAATAAATTTTTAGGC
26349638 TGGGGCGAATAAATTTTTAGGC
1 TGGGGCGAATAAATTTTTAGGC
26349660 TGG
1 TGG
26349663 TCCGCAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.26, C:0.09, G:0.34, T:0.32
Consensus pattern (22 bp):
TGGGGCGAATAAATTTTTAGGC
Found at i:26351887 original size:180 final size:180
Alignment explanation
Indices: 26351585--26351939 Score: 487
Period size: 180 Copynumber: 2.0 Consensus size: 180
26351575 TATGGAACTT
* * * *
26351585 CAAATTAAGATCCGTTAATTTTCCAAGAAACTAGACTCACATATATTCTTACCATAAAATTTTAA
1 CAAATTAAGAACCGCTAATTTTCCAAGAAACTAGACTCACATATATTCATACAATAAAATTTTAA
** * * * *
26351650 AATTTTTTTGTTTATTCAATTGGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTTTCCAAC
66 AATTTTTTTGTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACACCTATTTCACTGTCCAAC
* *
26351715 AGTTCCGACCTCTATTCACTAAAAATTATTTATCTCATGGTACAGGACTC
131 AGTTCCAACATCTATTCACTAAAAATTATTTATCTCATGGTACAGGACTC
* *
26351765 CAAATTAAGAACCGCTAATTTTCACAA-AAACTAGACTCACATATATTCATATAATAAAATTTTC
1 CAAATTAAGAACCGCTAATTTTC-CAAGAAACTAGACTCACATATATTCATACAATAAAATTTTA
* * * *
26351829 ATATTTTTTTGTTTAGCCAGTTAGTACAGTTTATTCATTAAAGATACACCTGTTTCACTGTCCGA
65 AAATTTTTTTGTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACACCTATTTCACTGTCCAA
* * * * *
26351894 TAGTTCCAATATTTCTTCATTAAAAATTATTTATCTCATGGTACAG
130 CAGTTCCAACATCTATTCACTAAAAATTATTTATCTCATGGTACAG
26351940 ATCTCGGATG
Statistics
Matches: 151, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
180 148 0.98
181 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.39
Consensus pattern (180 bp):
CAAATTAAGAACCGCTAATTTTCCAAGAAACTAGACTCACATATATTCATACAATAAAATTTTAA
AATTTTTTTGTTTAGCCAATTAGTACAGTTTATTCATTAAAGATACACCTATTTCACTGTCCAAC
AGTTCCAACATCTATTCACTAAAAATTATTTATCTCATGGTACAGGACTC
Found at i:26352571 original size:50 final size:50
Alignment explanation
Indices: 26352506--26352734 Score: 237
Period size: 50 Copynumber: 4.6 Consensus size: 50
26352496 CTGGTATGCA
*
26352506 TAGTAGCCTGCACTTAGTACTACACATGCGATCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* * * * * * * *
26352556 TAGTAGCCTGAACTTAGTACTACACACGTGATCGAGGTTAA-C-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTA--TCAATCTG-GTACACG
* * * * *
26352607 TAGTAGCCTGCACTTTGTACTACACATGCGACCTATCGATCCGCTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* * * * **
26352657 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
26352707 TAGTAGCCTGCACTTAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
26352735 TGTTTTCACA
Statistics
Matches: 145, Mismatches: 29, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
49 2 0.01
50 104 0.72
51 36 0.25
52 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
Found at i:26352678 original size:101 final size:101
Alignment explanation
Indices: 26352503--26352687 Score: 307
Period size: 101 Copynumber: 1.8 Consensus size: 101
26352493 TCTCTGGTAT
* * *
26352503 GCATAGTAGCCTGCACTTAGTACTACACATGCGATCTATCAATCTGGTACACGTAGTAGCCTGAA
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGCTACACGTAGTAGCCTGAA
26352568 CTTAGTACTACACACGTGATCGAGGTTAACGAGTAC
66 CTTAGTACTACACACGTGATCGAGGTTAACGAGTAC
* * * *
26352604 GCATAGTAGCCTGCACTTTGTACTACACATGCGACCTATCGATCCGCTACATGTAGTAGCCTGCA
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGCTACACGTAGTAGCCTGAA
26352669 CTTAGTACTACACACGTGA
66 CTTAGTACTACACACGTGA
26352688 CCTAACCATC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 77 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (101 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGCTACACGTAGTAGCCTGAA
CTTAGTACTACACACGTGATCGAGGTTAACGAGTAC
Found at i:26359598 original size:180 final size:180
Alignment explanation
Indices: 26359346--26359683 Score: 507
Period size: 180 Copynumber: 1.9 Consensus size: 180
26359336 TAAGATCCGT
* * *
26359346 TAATTTTTCAAAAAACTTGACTCACATATATTCTTATCATAAAAATTTCAGAATTTTTGGTTTAG
1 TAATTTTACAAAAAACTAGACTCACATATATTCATATCATAAAAATTTCAGAATTTTTGGTTTAG
* *
26359411 TCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGTCCAACAATTCCAACCTCTCT
66 TCAATTAGTACAGTTTATTCATTAAAGATACACCTATTTCACTGTCCAACAATTCCAACCTCTCT
26359476 TCACTAAAAATTATTTATCTCATGGTACGGGACTCAAAATTAAAAACATC
131 TCACTAAAAATTATTTATCTCATGGTACGGGACTCAAAATTAAAAACATC
* * *
26359526 TAATTTTACCAAAAACTAGCCTCACATATATTCATA-CAATAAAAATTTCAGAATTTTTTGTTTA
1 TAATTTTACAAAAAACTAGACTCACATATATTCATATC-ATAAAAATTTCAGAATTTTTGGTTTA
* * ** * * * *
26359590 GTCAATTAGTATAGTTTATTCATTAAAGATACACCTGTTTCACTGTCTGATAGTTCCAATCTTTC
65 GTCAATTAGTACAGTTTATTCATTAAAGATACACCTATTTCACTGTCCAACAATTCCAACCTCTC
*
26359655 TTCATTAAAAATTATTTATCTCATGGTAC
130 TTCACTAAAAATTATTTATCTCATGGTAC
26359684 AGATCTCGGA
Statistics
Matches: 140, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
179 1 0.01
180 139 0.99
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (180 bp):
TAATTTTACAAAAAACTAGACTCACATATATTCATATCATAAAAATTTCAGAATTTTTGGTTTAG
TCAATTAGTACAGTTTATTCATTAAAGATACACCTATTTCACTGTCCAACAATTCCAACCTCTCT
TCACTAAAAATTATTTATCTCATGGTACGGGACTCAAAATTAAAAACATC
Found at i:26360307 original size:50 final size:50
Alignment explanation
Indices: 26360242--26360529 Score: 281
Period size: 50 Copynumber: 5.7 Consensus size: 50
26360232 ACCGAAGCTC
* * *
26360242 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
** * * * *
26360292 AGTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACTTATCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* ** * * ** *
26360342 TCTGATACATGTAATAGCCTGCACTTAGTATTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * *** *
26360394 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCGA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * *
26360443 TCCGCTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
**
26360493 TCTAATACACATAGTAGCCTGCACTTAGTACTACACA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
26360530 TGTGTTCTCA
Statistics
Matches: 188, Mismatches: 47, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
49 2 0.01
50 151 0.80
51 33 0.18
52 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:26360461 original size:101 final size:100
Alignment explanation
Indices: 26360256--26360530 Score: 291
Period size: 101 Copynumber: 2.7 Consensus size: 100
26360246 GTACGCATAG
* * * * * ** *
26360256 TAGCCTGCACTTAGTACTACACATGCGACC-TATCAAAGTGGTACACGTAGTAGCCTGCACTTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCGAACCAACG-AATACACATAGTAGCCTGCACTTAG
* * * * *
26360320 TACTACACACATGACTTATCCATCTGATACATGTAA
65 TACTACACATACGACCTATCCATCCGATACACGTAA
* * ** ** *
26360356 TAGCCTGCACTTAGTATTACACACGTGATCGAAGTTAACGGGTACGCATAGTAGCCTGCACTTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCGAA-CCAACGAATACACATAGTAGCCTGCACTTAG
* * *
26360421 TACTACACATACGACCTATCGATCCGCTACACGTAG
65 TACTACACATACGACCTATCCATCCGATACACGTAA
* * *
26360457 TAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACATAGTAGCCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACACGTGACCGAACCAACGAATACACATAGTAGCCTGCACTTAGT
26360522 ACTACACAT
66 ACTACACAT
26360531 GTGTTCTCAC
Statistics
Matches: 146, Mismatches: 27, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
100 60 0.41
101 82 0.56
102 4 0.03
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (100 bp):
TAGCCTGCACTTAGTACTACACACGTGACCGAACCAACGAATACACATAGTAGCCTGCACTTAGT
ACTACACATACGACCTATCCATCCGATACACGTAA
Found at i:26360511 original size:151 final size:151
Alignment explanation
Indices: 26360245--26360529 Score: 444
Period size: 151 Copynumber: 1.9 Consensus size: 151
26360235 GAAGCTCTCT
* ** *
26360245 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAAGTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAAACCGCTACACGTAGTAGC
* * * ** *
26360310 CTGCACTTAGTACTACACACATGACTTATCCATCTGATACATGTAATAGCCTGCACTTAGTATTA
66 CTGCACTTAGTACTACACACATGACCTAACCATCTAATACACATAATAGCCTGCACTTAGTACTA
26360375 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
* *
26360396 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCGATCCGCTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAAACCGCTACACGTAGTAGC
* *
26360461 CTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACATAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACATGACCTAACCATCTAATACACATAATAGCCTGCACTTAGTACTA
26360526 CACA
131 CACA
26360530 TGTGTTCTCA
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
151 120 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAAACCGCTACACGTAGTAGC
CTGCACTTAGTACTACACACATGACCTAACCATCTAATACACATAATAGCCTGCACTTAGTACTA
CACACGTGATCGAAGTTAACG
Found at i:26372949 original size:48 final size:48
Alignment explanation
Indices: 26372878--26373055 Score: 268
Period size: 48 Copynumber: 3.7 Consensus size: 48
26372868 CATTAAGGAA
*
26372878 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGGGC
1 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGC
* * * *
26372926 TTCATTGATTTGGCTTCGAGCCATAATATTGGTACTTCGGGTGCGAG-
1 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGC
*
26372973 TTACATTGATTTGGCTTCGGGCTATGATATCGGCACTTCGGGTGCGAGC
1 TT-CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGC
* *
26373022 TTCATTGATTTGGCTTTGGGCCATGATATTGGCA
1 TTCATTGATTTGGCTTCGGGCCATGATATCGGCA
26373056 GTTAGGGTAC
Statistics
Matches: 115, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 2 0.02
48 111 0.97
49 2 0.02
ACGTcount: A:0.16, C:0.19, G:0.30, T:0.35
Consensus pattern (48 bp):
TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGC
Found at i:26373045 original size:96 final size:96
Alignment explanation
Indices: 26372880--26373053 Score: 303
Period size: 96 Copynumber: 1.8 Consensus size: 96
26372870 TTAAGGAATT
*
26372880 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGGGCTTCATTGATTTGGCTTCGA
1 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGA
26372945 GCCATAATATTGGTACTTCGGGTGCGAGTTA
66 GCCATAATATTGGTACTTCGGGTGCGAGTTA
* * *
26372976 CATTGATTTGGCTTCGGGCTATGATATCGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTTGG
1 CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGA
*
26373041 GCCATGATATTGG
66 GCCATAATATTGG
26373054 CAGTTAGGGT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.16, C:0.19, G:0.30, T:0.34
Consensus pattern (96 bp):
CATTGATTTGGCTTCGGGCCATGATATCGGCACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGA
GCCATAATATTGGTACTTCGGGTGCGAGTTA
Found at i:26375439 original size:13 final size:13
Alignment explanation
Indices: 26375421--26375447 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26375411 GAAGTAATCG
26375421 CACACGGGCGTGT
1 CACACGGGCGTGT
26375434 CACACGGGCGTGT
1 CACACGGGCGTGT
26375447 C
1 C
26375448 CCTGTTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:26381476 original size:43 final size:42
Alignment explanation
Indices: 26381395--26381538 Score: 150
Period size: 43 Copynumber: 3.4 Consensus size: 42
26381385 TGTGTTATTG
* * *
26381395 TGTAAGACCACGTTTGGGACGTGGCATC-AACTTCTGATTTATA
1 TGTAAGACCACGTCTGGGACGTGGCATCGTA-TT-TGATTTACA
* *
26381438 TGTAGGACCACCTCTGGGACGTTGGCATCGTATTTGATTT-CA
1 TGTAAGACCACGTCTGGGACG-TGGCATCGTATTTGATTTACA
***
26381480 TGTAAGACCTTTTCTGGGACAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCACGTCTGGGAC-GTGGCATCG-TATTTGATTTACA
26381523 TGTAAGACCACGTCTG
1 TGTAAGACCACGTCTG
26381539 AGGCATTAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
42 27 0.32
43 47 0.56
44 9 0.11
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTGGCATCGTATTTGATTTACA
Found at i:26382695 original size:66 final size:66
Alignment explanation
Indices: 26382618--26382743 Score: 168
Period size: 66 Copynumber: 1.9 Consensus size: 66
26382608 CTAGACACGC
*
26382618 GGGCGTGTCTTGTGGCCGTGT-GAACCAAGTCAGTA-GTCT-CCCTAATTTTCACACGGCCTGGC
1 GGGCGTGTCTTGTGGCCGTGTAG-A-CAAGTCAGTATGTATGCCCT-ATTTTCACACGGCCTGGC
26382680 ACAT
63 ACAT
* * *
26382684 GGGCGTGTCTTGTGGCTGTGTAGACAAGTCAGTATGTATGCCCTGTTTTGACACGGCCTG
1 GGGCGTGTCTTGTGGCCGTGTAGACAAGTCAGTATGTATGCCCTATTTTCACACGGCCTG
26382744 TTCACACGGG
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
65 10 0.19
66 38 0.72
67 5 0.09
ACGTcount: A:0.17, C:0.24, G:0.30, T:0.29
Consensus pattern (66 bp):
GGGCGTGTCTTGTGGCCGTGTAGACAAGTCAGTATGTATGCCCTATTTTCACACGGCCTGGCACA
T
Found at i:26384891 original size:48 final size:48
Alignment explanation
Indices: 26384815--26385005 Score: 251
Period size: 48 Copynumber: 4.0 Consensus size: 48
26384805 CATTAGGGAA
* * * *
26384815 TTCACTGATTTGGGTTCGGGCCATGATATCGGTACTTCGGGTGCGAGC
1 TTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGC
* *
26384863 TTCATTGATTTGGCTTCAGGCCATGATATTGGCACTTCAGGTGCGAG-
1 TTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGC
*
26384910 TTACATTGATTTGGCTTCGGGCC-TCGATATTGGCACTTCGGGTGCAAGC
1 TT-CATTGATTTGGCTTCGGGCCAT-GATATTGGCACTTCGGGTGCGAGC
* * * *
26384959 TTTATTGATTTCGCTTCGAGCCATGATATTGGCACTTAGGGTGCGAG
1 TTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAG
26385006 ACTGTCGAGT
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
47 3 0.02
48 119 0.95
49 3 0.02
ACGTcount: A:0.17, C:0.20, G:0.29, T:0.34
Consensus pattern (48 bp):
TTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAGC
Found at i:26386694 original size:20 final size:20
Alignment explanation
Indices: 26386669--26386713 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
26386659 AGGGACTAAA
* *
26386669 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
26386689 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
26386709 ATGAA
1 ATGAA
26386714 TATATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:26389305 original size:46 final size:46
Alignment explanation
Indices: 26389255--26389427 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
26389245 TGGTTGAGCA
*
26389255 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
** * * ** *
26389301 TCCGAACTCGTTGAGTTGAGTCCGAGTT-TGTGAGATGTA-GCTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGC-AAACG
*
26389348 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
26389394 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26389428 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 66 0.64
47 35 0.34
48 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:26389411 original size:93 final size:93
Alignment explanation
Indices: 26389252--26389421 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
26389242 GGATGGTTGA
* *
26389252 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
26389317 TGAGTCCGAGTTTGTGAGATGTAGCTAG
66 TGAGTCCGAGTTTGTGAGATGTAGCTAG
* *
26389345 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
26389410 TGAGTCTGAGTT
66 TGAGTCCGAGTT
26389422 CACTTAGGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAGCTAG
Found at i:26389689 original size:19 final size:20
Alignment explanation
Indices: 26389652--26389689 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
26389642 ATAAGGTGGT
26389652 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
26389672 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
26389690 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:26397002 original size:47 final size:47
Alignment explanation
Indices: 26396835--26397006 Score: 194
Period size: 47 Copynumber: 3.7 Consensus size: 47
26396825 GGTTGAGCAT
* *
26396835 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTTATGGATGCAAACGC
* * *
26396881 CCGAACTCGTTGAGTTGAGTCCGAG-----TTTGTGAGATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTTATG-GATGCAA--ACGC
*
26396926 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTTATGGATGCAAACGC
*
26396975 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
26397007 AGGGGCGGGT
Statistics
Matches: 106, Mismatches: 9, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 2 0.02
46 25 0.24
47 56 0.53
49 3 0.03
51 5 0.05
52 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (47 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTTATGGATGCAAACGC
Found at i:26398215 original size:27 final size:27
Alignment explanation
Indices: 26398183--26398234 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
26398173 CAAGATATGA
26398183 TTTTTCTTGTAACTGTGACGCGGGTGT
1 TTTTTCTTGTAACTGTGACGCGGGTGT
*
26398210 TTTTTCTTGTAACTGTGACGTGGGT
1 TTTTTCTTGTAACTGTGACGCGGGT
26398235 AGTTAGAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.12, C:0.13, G:0.29, T:0.46
Consensus pattern (27 bp):
TTTTTCTTGTAACTGTGACGCGGGTGT
Found at i:26402334 original size:43 final size:41
Alignment explanation
Indices: 26402171--26402334 Score: 143
Period size: 43 Copynumber: 3.9 Consensus size: 41
26402161 AAGCTCGTAC
* *
26402171 AATGCC-ATATCCCAGATATGGTCTTACATGTTATCTAATAT
1 AATGCCAATATCCCAGACATGGTCTTACATGTAATCTAAT-T
* * *
26402212 AGATGCCACTATCCCAGACAGGGTCTTACATGAAATCGATTAA-T
1 A-ATGCCAATATCCCAGACATGGTCTTACATGTAATC---TAATT
* * * **
26402256 GATGCCAATGTCCTAGACATGGTCTTACACATAATCTCAATT
1 AATGCCAATATCCCAGACATGGTCTTACATGTAATCT-AATT
* *
26402298 CAATGCCAATGTCCCAGATATGGTCTTACATGTAATC
1 -AATGCCAATATCCCAGACATGGTCTTACATGTAATC
26402335 ATATCTCAGT
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 6 0.06
43 83 0.86
44 1 0.01
46 3 0.03
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (41 bp):
AATGCCAATATCCCAGACATGGTCTTACATGTAATCTAATT
Found at i:26407377 original size:50 final size:50
Alignment explanation
Indices: 26407296--26407690 Score: 343
Period size: 50 Copynumber: 7.9 Consensus size: 50
26407286 TCTGTTGTGA
*
26407296 GTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGATAG
* * * *
26407346 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACT--TCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAG---ACTGATAG
* * ** * * * *
26407397 ATCACGTGTGTAGTACTAAGTGTGGGCTACTACGTGTATCAGA-TGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACT-GATAG
* * * * *
26407447 GTCACGTATGTAGTACTAAGTGCAGGGTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGATAG
* * *
26407497 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACT--TCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAG---ACTGATAG
* * * * * *
26407548 ATCACATGTGTAGTACTAAGTGCATGCTACTACGTGTATCAGA-TGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACT-GATAG
** * * * * *
26407598 GTCATGTGTGTAGCACTACGTGAAGGCTACTATGTGTACCAGATTAATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGATAG
* **
26407648 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
26407691 GAGCTTCGAT
Statistics
Matches: 271, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
47 2 0.01
48 2 0.01
50 187 0.69
51 75 0.28
53 5 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGATAG
Found at i:26407472 original size:101 final size:101
Alignment explanation
Indices: 26407297--26407687 Score: 290
Period size: 101 Copynumber: 3.9 Consensus size: 101
26407287 CTGTTGTGAG
* * * *
26407297 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGATAAGTCACATATGTAGTAC
26407362 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
** * * *
26407398 TCACGTGTGTAGTACTAAGTGTGGGCTACTACGTGTATCAGA-TGGTTAAGTCACGTATGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GATAAGTCACATATGTAGTA
* * * * * * *
26407462 CTAAGTGCAGGGTACTACGTGTACCAGATTGA--TAGG
65 CTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGA
* * * * * * ** *
26407498 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGATCACATGTGTAGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGA-TAAG-TCACATATGTAGT
* * * * * * ** *
26407562 ACTAAGTGCATGCTACTACGTGTATCAGAT-GGTT-AA
64 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
* * * * * * * * * *
26407598 GTCATGTGTGTAGCACTACGTGAAGGCTACTATGTGTACCAGATTAATAGGTCGCATGTGTAGTA
1 -TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGATAAGTCACATATGTAGTA
*
26407663 CTAAGTGCAGGCTACTATGCATACC
65 CTAAGTGCAGGCTACTATGCGTACC
26407688 AGAGAGCTTC
Statistics
Matches: 230, Mismatches: 51, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
100 74 0.32
101 149 0.65
102 7 0.03
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGATAAGTCACATATGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
Found at i:26407704 original size:151 final size:151
Alignment explanation
Indices: 26407295--26407687 Score: 651
Period size: 151 Copynumber: 2.6 Consensus size: 151
26407285 ATCTGTTGTG
*
26407295 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
* **
26407360 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTGGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCT
26407425 ACTACGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
* * * *
26407446 AGTCACGTATGTAGTACTAAGTGCAGGGTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
26407511 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCATGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCT
26407576 ACTACGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
* * * * *
26407597 AGTCATGTGTGTAGCACTACGTGAAGGCTACTATGTGTACCAGATTAATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
26407662 ACTAAGTGCAGGCTACTATGCATACC
66 ACTAAGTGCAGGCTACTATGCGTACC
26407688 AGAGAGCTTC
Statistics
Matches: 223, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
151 223 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGCAGGCT
ACTACGTGTATCAGATGGTTA
Found at i:26407911 original size:16 final size:16
Alignment explanation
Indices: 26407890--26407921 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26407880 AGAAAGGAGT
26407890 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
26407906 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
26407922 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:26410144 original size:53 final size:53
Alignment explanation
Indices: 26410086--26410192 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
26410076 GATAACATGT
26410086 GAGATAAAAGTTTATGTTACGAGGAATACTCATGCTTGTTTGATATTCATACG
1 GAGATAAAAGTTTATGTTACGAGGAATACTCATGCTTGTTTGATATTCATACG
26410139 GAGATAAAAGTTTATGTTACGAGGAATACTCATGCTTGTTTGATATTCATACG
1 GAGATAAAAGTTTATGTTACGAGGAATACTCATGCTTGTTTGATATTCATACG
26410192 G
1 G
26410193 TGTTGTGCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (53 bp):
GAGATAAAAGTTTATGTTACGAGGAATACTCATGCTTGTTTGATATTCATACG
Found at i:26412835 original size:15 final size:15
Alignment explanation
Indices: 26412814--26412857 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
26412804 TATGATATTG
26412814 TATCTTGGATTTC-C
1 TATCTTGGATTTCTC
26412828 TGATCTTGGATTTCTC
1 T-ATCTTGGATTTCTC
*
26412844 TATCTTGGACTTCT
1 TATCTTGGATTTCT
26412858 TAATCCTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 1 0.04
15 24 0.89
16 2 0.07
ACGTcount: A:0.14, C:0.20, G:0.16, T:0.50
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:26412872 original size:30 final size:30
Alignment explanation
Indices: 26412814--26412872 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
26412804 TATGATATTG
* * *
26412814 TATCTTGGATTTCCTGATCTTGGATTTCTC
1 TATCTTGGACTTCCTAATCCTGGATTTCTC
* *
26412844 TATCTTGGACTTCTTAATCCTGGTTTTCT
1 TATCTTGGACTTCCTAATCCTGGATTTCT
26412873 TGTTACCTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.14, C:0.20, G:0.15, T:0.51
Consensus pattern (30 bp):
TATCTTGGACTTCCTAATCCTGGATTTCTC
Found at i:26415207 original size:30 final size:30
Alignment explanation
Indices: 26415153--26415211 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
26415143 TTTACGAGCC
* *
26415153 TAGGGGCCAAAGTGCAAATATGTAAAAGTT
1 TAGGGGCCAAAATGAAAATATGTAAAAGTT
* *
26415183 TAGGGGTCAAAATGAAAATTTGTAAAAGT
1 TAGGGGCCAAAATGAAAATATGTAAAAGT
26415212 ATGATTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.25
Consensus pattern (30 bp):
TAGGGGCCAAAATGAAAATATGTAAAAGTT
Found at i:26415900 original size:50 final size:50
Alignment explanation
Indices: 26415819--26416202 Score: 317
Period size: 50 Copynumber: 7.6 Consensus size: 50
26415809 TCCGTTGTGA
* * * * * * *
26415819 GTCACGTGTGTAGTATTGAGTGTAGGCTACTACATTTACCAAATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *** ** *
26415869 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATACGTACC-CTTTAACT-G
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA-TAG
** * * * * * * *
26415918 CGATCATGTGTGTAGTAATAAGTGTAGGCTACTATGTGTATCAGATAGTTAA
1 -G-TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
26415970 GTCACGTGTGTAGTACTAAGTGCAGGGTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * *
26416020 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* ** * * *
26416071 ATCATGTGTGTAGTACTAAGTGCATGCTACTACGTGTATCAGA-TGATTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA-TAG
* * *
26416121 GTCACGTGTGTAGTACTAAGTGAAGGTTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
*
26416171 GTCATATGTGTAGTACTAAGTGCAGGCTACTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTA
26416203 TGCATACCAA
Statistics
Matches: 260, Mismatches: 65, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
49 7 0.03
50 179 0.69
51 73 0.28
52 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:26416092 original size:151 final size:151
Alignment explanation
Indices: 26415818--26416210 Score: 599
Period size: 151 Copynumber: 2.6 Consensus size: 151
26415808 ATCCGTTGTG
* * * * * *
26415818 AGTCACGTGTGTAGTATTGAGTGTAGGCTACTACATTTACCAAATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * *
26415883 ACTAAGTGCAGGCTACTATACGTACCCTTTAACTGCGATCATGTGTGTAGTAATAAGTGTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTGCGATCATGTGTGTAGTAATAAGTGCAGGCT
*
26415948 ACTATGTGTATCAGAT-AGTTA
131 ACTACGTGTATCAGATGA-TTA
* *
26415969 AGTCACGTGTGTAGTACTAAGTGCAGGGTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * *
26416034 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGCATGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTGCGATCATGTGTGTAGTAATAAGTGCAGGCT
26416099 ACTACGTGTATCAGATGATTA
131 ACTACGTGTATCAGATGATTA
* **
26416120 AGTCACGTGTGTAGTACTAAGTGAAGGTTACTACGTGTACCAGATTGATAGGTCATATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
26416185 ACTAAGTGCAGGCTACTATGCATACC
66 ACTAAGTGCAGGCTACTATGCGTACC
26416211 AAAGAGCTTT
Statistics
Matches: 222, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
151 221 1.00
152 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTGCGATCATGTGTGTAGTAATAAGTGCAGGCT
ACTACGTGTATCAGATGATTA
Found at i:26416226 original size:101 final size:100
Alignment explanation
Indices: 26415819--26416226 Score: 293
Period size: 101 Copynumber: 4.0 Consensus size: 100
26415809 TCCGTTGTGA
* * * * * *
26415819 GTCACGTGTGTAGTATTGAGTGTAGGCTACTACATTTACCAAATTGATAGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTA
** *** * **
26415884 CTAAGTGCAGGCTACTATACGTACCCTTTAACTGCG
66 CTAAGTGCAGGCTACTACGCGTA-CCAAGAGCTTAG
* * * * * * * * *
26415920 ATCATGTGTGTAGTAATAAGTGTAGGCTACTATGTGTATCAGATAGTTAAGTCACGTGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTA
* * *
26415985 CTAAGTGCAGGGTACTACGTGTACC-AGATTG-ATAG
66 CTAAGTGCAGGCTACTACGCGTACCAAGA--GCTTAG
* * * * * * * * * **
26416020 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGATCATGTGTGTAG
1 GTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGA--TAGGTCACATGTGTAG
* * * * *
26416084 TACTAAGTGCATGCTACTACGTGTATC-AGATGATTAA
64 TACTAAGTGCAGGCTACTACGCGTACCAAGA-GCTTAG
* * *
26416121 GTCACGTGTGTAGTACTAAGTGAAGGTTACTACGTGTACCAGATTGATAGGTCATATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTA
* * *
26416186 CTAAGTGCAGGCTACTATGCATACCAAAGAGCTTTG
66 CTAAGTGCAGGCTACTACGCGTACC-AAGAGCTTAG
26416222 GTCAC
1 GTCAC
26416227 AAGGGTGGTA
Statistics
Matches: 235, Mismatches: 64, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
99 2 0.01
100 73 0.31
101 154 0.66
102 6 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (100 bp):
GTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTA
CTAAGTGCAGGCTACTACGCGTACCAAGAGCTTAG
Found at i:26432423 original size:54 final size:51
Alignment explanation
Indices: 26432346--26432503 Score: 205
Period size: 54 Copynumber: 3.1 Consensus size: 51
26432336 TTGATGTACA
*
26432346 AGATAAATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATAT-TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* **
26432398 AGATATGTATATGTATATGTAGTAAAGCCGAATGGCTAACATGAAATATGTATG
1 AGATA--TATAT-TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
26432452 AG--ATATA-TATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTAGG
1 AGATATATATTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
26432500 AGAT
1 AGAT
26432504 GTGTGTATAT
Statistics
Matches: 92, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
48 38 0.41
50 4 0.04
52 6 0.07
54 44 0.48
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.31
Consensus pattern (51 bp):
AGATATATATTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Done.