Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1313
Parameters: 2 7 7 80 10 50 1000
Length:  81453

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3015--3039
8
3.1
8
100
0
50
12
52
12
24
1.72
4161--4214
23
2.3
23
83
0
72
31
7
3
57
1.44
4006--4245
3
80.7
3
66
15
52
25
7
4
62
1.40
4323--4374
3
17.3
3
87
0
77
32
3
1
61
1.25
16650--17228
44
13.1
44
71
7
368
27
16
25
30
1.97
16645--17143
132
3.8
132
93
0
872
28
16
25
30
1.96
17126--17443
46
7.1
46
66
13
164
27
20
24
27
1.99
17141--17453
134
2.3
134
96
0
572
26
21
23
28
1.99
17450--17599
40
3.8
40
99
0
291
30
26
18
26
1.98
17969--17993
8
3.1
8
100
0
50
12
52
12
24
1.72
19117--19170
23
2.3
23
83
0
72
31
7
3
57
1.44
19281--19335
3
18.3
3
88
0
83
32
3
1
61
1.24
20814--20865
19
3.2
15
78
21
52
51
3
7
36
1.49
20921--20965
21
2.1
21
84
8
56
57
6
11
24
1.57
21233--21298
19
3.2
21
85
6
64
36
21
9
33
1.85
21250--21347
19
5.2
19
90
7
146
34
17
11
36
1.85
21272--21328
17
3.5
15
88
11
53
35
15
10
38
1.82
21250--21344
36
2.5
36
88
6
136
34
16
11
36
1.85
22225--22369
77
1.9
77
81
2
175
24
25
14
35
1.93
22402--22464
33
1.9
33
87
6
92
22
1
6
69
1.19
22692--22716
12
2.1
12
100
0
50
64
8
0
28
1.22
23297--23338
20
2.2
20
87
12
61
30
2
0
66
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25520--25545
5
5.2
5
100
0
52
19
0
0
80
0.71
26776--26838
30
2.1
30
100
0
126
23
6
15
53
1.65
36150--36198
20
2.5
20
80
6
55
63
2
2
32
1.17
38299--38338
16
2.6
16
84
4
55
67
5
0
27
1.11
38420--38487
18
3.7
18
82
5
73
63
1
2
32
1.18
38429--38482
28
1.9
28
84
0
72
59
1
3
35
1.26
38424--38491
9
7.4
9
72
8
57
63
1
2
32
1.18
38675--38747
26
2.7
26
80
16
78
50
0
9
39
1.35
38767--38843
22
3.2
23
75
15
68
61
2
5
31
1.32
44591--44621
15
2.1
15
93
0
53
45
6
0
48
1.28
53967--54011
3
15.0
3
100
0
90
66
0
0
33
0.92
54014--54046
16
2.1
16
88
11
50
42
0
0
57
0.98
54001--54050
24
2.0
24
84
3
64
44
0
0
56
0.99
54040--54115
29
2.5
30
81
14
86
47
0
1
51
1.09
54139--54201
31
2.0
31
100
0
126
46
15
0
38
1.47
57653--57692
21
1.9
21
84
0
53
17
12
0
70
1.18
58355--58396
22
1.9
22
85
9
59
57
2
2
38
1.25
58676--58705
4
7.5
4
100
0
60
23
0
0
76
0.78
60318--60479
46
3.5
46
75
14
170
31
29
19
20
1.97
62315--62399
4
21.2
4
100
0
170
50
24
0
24
1.49
64721--64772
24
2.2
24
85
0
68
53
5
3
36
1.43
65019--65361
177
1.9
176
89
2
528
34
14
10
39
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66561--66602
21
2.0
21
85
0
57
66
7
2
23
1.28

Tables:   1

The End!