Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold607
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35145
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Found at i:6890 original size:40 final size:40
Alignment explanation
Indices: 6860--6988 Score: 177
Period size: 40 Copynumber: 3.2 Consensus size: 40
6850 GGACTAAGAT
* *
6860 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
6900 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** * *
6940 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
6980 CCGAAGGCA
1 CCGAAGGCA
6989 ATTGAACGAG
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:6944 original size:80 final size:81
Alignment explanation
Indices: 6807--6988 Score: 208
Period size: 80 Copynumber: 2.3 Consensus size: 81
6797 TTGAATGCTG
* * *
6807 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
*
6871 TGTGCGAGATACTAAA
66 CGTGCGAGATACTAAA
* * * * **
6887 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* **
6950 TCGTGCGAGTTGTTAAA
65 TCGTGCGAGATACTAAA
*
6967 TCCGGGCTATGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
6989 ATTGAACGAG
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 78 0.92
81 6 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAA
Found at i:13428 original size:40 final size:40
Alignment explanation
Indices: 13356--13653 Score: 492
Period size: 40 Copynumber: 7.5 Consensus size: 40
13346 AACCCAAGTA
* *
13356 CCTTCGGGATTTAG-CCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
13395 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
13435 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
13475 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
13515 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
13555 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
13595 CCATCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
13635 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
13654 TTGTCATCCG
Statistics
Matches: 245, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 15 0.06
40 229 0.93
41 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:20206 original size:56 final size:56
Alignment explanation
Indices: 20120--20295 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
20110 ACAAGGGATG
*
20120 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
20176 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
20232 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
20288 ATGGGCAA
1 ATGGGCAA
20296 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:21615 original size:40 final size:40
Alignment explanation
Indices: 21428--21608 Score: 181
Period size: 40 Copynumber: 4.5 Consensus size: 40
21418 ATGATGTCCA
* * * *
21428 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* * * * *
21468 GACTAAGAT-ACGAAGGTATTTGTGTGAGTTACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* * *
21508 GGCTAAG-CCGGAAGGCATTGGTGCGAGTTACTAAATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
21547 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
21587 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
21609 AACGAGTAGC
Statistics
Matches: 113, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
39 30 0.27
40 74 0.65
41 9 0.08
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:21630 original size:79 final size:79
Alignment explanation
Indices: 21478--21631 Score: 170
Period size: 79 Copynumber: 1.9 Consensus size: 79
21468 GACTAAGATA
* * * * **
21478 CGAAGGTATTTGTGTGAGTTACTAATTCCGGGCTAAGCCGGAAGGCATTGGTGCGAGTTACTAAA
1 CGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
*
21543 TCTGGGTTAAGTCC
66 TCTCGGTTAAGTCC
* *
21557 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CT
*
21620 ATATC-CGGTTAA
63 AAATCTCGGTTAA
21632 ATTTCGAAGG
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.61
80 22 0.35
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
TCTCGGTTAAGTCC
Found at i:25064 original size:47 final size:47
Alignment explanation
Indices: 25010--25463 Score: 710
Period size: 47 Copynumber: 9.6 Consensus size: 47
25000 TATTTGAATA
25010 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
25057 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
25104 AATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
25151 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
25200 AATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
25247 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
25296 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
25343 AATGTGAAAGTGTATATATGTGATAAGGCCTAACGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
25390 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
25437 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
25464 TCCCGAAGGA
Statistics
Matches: 373, Mismatches: 30, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 286 0.77
49 87 0.23
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:25190 original size:96 final size:94
Alignment explanation
Indices: 25010--25463 Score: 728
Period size: 96 Copynumber: 4.8 Consensus size: 94
25000 TATTTGAATA
* *
25010 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
25075 TGTGATAAGGCCTAATAGCCGATGTGATG
66 TGTGATAAGGCCTAATAGCCGATGTGATG
*
25104 AATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTGTATA
25169 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATAGCCGATGTGATG
*
25200 AATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
*
25265 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATAGCCGATGTGATG
* * *
25296 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
**
25361 TGTGATAAGGCCTAACGGCCGATGTGATG
66 TGTGATAAGGCCTAATAGCCGATGTGATG
* * * * * *
25390 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
25455 TGTGATAAG
66 TGTGATAAG
25464 TCCCGAAGGA
Statistics
Matches: 338, Mismatches: 18, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
94 155 0.46
96 183 0.54
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATAGCCGATGTGATG
Found at i:25309 original size:143 final size:141
Alignment explanation
Indices: 25010--25463 Score: 737
Period size: 143 Copynumber: 3.2 Consensus size: 141
25000 TATTTGAATA
*
25010 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* *
25075 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
25140 CCAATGTGATG
131 CCAATGTGATG
*
25151 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTGTA
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
* * *
25216 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGA
*
25281 ATGGCCGATGTGATG
127 ATGGCCAATGTGATG
25296 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
25361 TGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
*
25426 CCAACGTGATG
131 CCAATGTGATG
* *
25437 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
25464 TCCCGAAGGA
Statistics
Matches: 289, Mismatches: 20, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
141 63 0.22
143 185 0.64
145 41 0.14
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:25720 original size:37 final size:37
Alignment explanation
Indices: 25582--25719 Score: 249
Period size: 37 Copynumber: 3.7 Consensus size: 37
25572 CCGAGCTCTA
25582 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
25619 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
25656 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
25693 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
25720 TCGTCTGAGC
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:32408 original size:56 final size:58
Alignment explanation
Indices: 32322--32458 Score: 251
Period size: 56 Copynumber: 2.4 Consensus size: 58
32312 ACAAGGGATG
*
32322 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAA-AA-ATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAAAATAAGAAGC
32378 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAAAATAAGAAGC
32436 ATGGGCAAAACATGTCATGAAAC
1 ATGGGCAAAACATGTCATGAAAC
32459 TAATGGAAGA
Statistics
Matches: 78, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
56 40 0.51
57 2 0.03
58 36 0.46
ACGTcount: A:0.46, C:0.10, G:0.22, T:0.22
Consensus pattern (58 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAAAATAAGAAGC
Found at i:33753 original size:79 final size:82
Alignment explanation
Indices: 33617--33799 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 82
33607 TCGAATGATG
* *
33617 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
33681 TGTGCGAGTTACTA-AT
66 TGTGCGAGTTACTATAA
* * * **
33697 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
33759 TTGTGCGAGTTACTATAA
65 TTGTGCGAGTTACTATAA
*
33777 T-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33800 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 31 0.34
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:33808 original size:40 final size:40
Alignment explanation
Indices: 33617--33801 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
33607 TCGAATGATG
* * * *
33617 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
33657 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33697 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33736 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33777 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33802 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33823 original size:79 final size:79
Alignment explanation
Indices: 33670--33834 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
33660 GGACTAAGAT
* **
33670 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
33735 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
33749 CCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
33812 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
33828 CCGAAGG
1 CCGAAGG
33835 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
79 49 0.65
80 26 0.35
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Done.