genome.fa.s111.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold570
Parameters: 2 7 7 80 10 50 1000
Length:  75937

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8319--8371	22	2.5	22	84	9	65	20	26	18	33	1.96
12125--12156	15	2.2	14	94	5	55	59	6	6	28	1.46
12178--12236	25	2.4	24	83	11	75	62	0	3	33	1.12
12878--12919	17	2.5	17	84	7	50	76	9	7	7	1.17
13509--13541	17	1.9	17	93	0	57	18	6	6	69	1.30
13688--13870	80	2.3	80	84	5	230	29	24	15	30	1.95
13854--14123	44	6.3	43	78	5	233	26	25	18	29	1.98
13979--14123	41	3.5	41	79	9	175	30	24	17	28	1.97
13853--14123	85	3.1	85	83	3	319	26	25	18	29	1.98
14106--14407	44	6.9	44	88	2	428	29	26	14	30	1.95
26409--26528	33	4.0	29	73	21	86	64	4	4	27	1.31
26570--26634	25	2.5	27	82	9	73	64	0	1	33	1.03
27905--27939	17	2.1	17	94	0	61	17	0	8	74	1.06
30447--30481	17	1.9	17	88	11	52	37	0	2	60	1.12
30434--30486	19	2.8	20	75	18	58	41	0	1	56	1.10
31101--31134	16	2.2	16	89	5	52	38	35	5	20	1.77
31716--31761	22	2.1	21	84	4	56	21	30	17	30	1.96
33964--34016	26	2.0	27	85	7	74	24	15	22	37	1.92
35502--35557	26	2.2	26	100	0	112	35	26	7	30	1.83
37181--37234	17	3.3	15	80	19	56	37	11	14	37	1.82
37179--37250	19	3.9	19	87	10	114	38	11	13	36	1.81
37187--37250	17	3.6	17	85	8	83	39	12	12	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37179--37257	35	2.2	37	84	13	112	39	10	15	35	1.81
37411--37530	59	2.0	59	100	0	240	16	23	10	50	1.75
37601--37634	18	1.9	17	94	5	59	26	0	0	73	0.83
38357--38381	13	1.9	13	100	0	50	48	12	8	32	1.69
44742--44849	26	4.2	26	93	0	189	32	7	24	36	1.83
46337--46389	26	2.0	26	85	7	72	37	22	15	24	1.92
48038--48068	12	2.6	12	94	0	53	12	25	48	12	1.77
52942--53049	26	4.2	26	93	0	189	32	7	24	36	1.83
54536--54588	26	2.0	26	82	7	63	37	20	15	26	1.92
60988--61043	24	2.3	24	100	0	112	17	19	16	46	1.84
65197--65296	28	3.6	28	71	9	82	60	5	5	30	1.40
65269--65344	11	6.5	11	73	19	64	64	0	2	32	1.07
65269--65346	25	3.2	24	87	3	104	64	0	2	33	1.08
65382--65433	26	2.1	25	85	7	70	48	0	5	46	1.26
66562--66600	20	1.9	21	89	5	62	12	10	38	38	1.78
67162--67455	78	3.8	78	88	1	428	31	19	23	25	1.98
67527--67897	78	4.8	78	88	1	523	32	17	23	25	1.96
67023--67819	364	2.2	365	91	2	1289	32	18	23	25	1.97
67162--68451	442	2.9	443	88	2	1915	32	18	23	25	1.97
67969--68341	78	4.8	78	89	1	541	32	19	23	25	1.97
68355--68539	45	4.3	45	81	12	201	31	15	28	24	1.95
68417--68540	44	3.1	38	89	8	169	29	14	29	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68896--68993	35	2.7	37	84	12	132	37	9	17	35	1.82
68896--68986	19	4.9	19	88	8	143	37	9	16	36	1.82
68896--69009	19	5.8	22	77	17	78	36	8	16	37	1.80
69274--69308	18	2.0	17	88	5	52	31	0	0	68	0.90

Tables:   1

The End!