Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1354
Parameters: 2 7 7 80 10 50 1000
Length:  27391

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2691--2737
20
2.3
20
81
0
58
29
34
12
23
1.92
5039--5107
29
2.4
29
92
4
113
46
11
10
31
1.74
12725--12821
30
3.2
30
72
8
99
28
16
26
27
1.97
14999--15029
12
2.6
12
100
0
62
25
16
12
45
1.83
15077--15118
5
8.0
5
85
15
50
2
16
0
80
0.81
15077--15118
16
2.6
16
85
10
59
2
16
0
80
0.81
15075--15129
16
3.5
15
80
14
58
1
18
1
78
0.94
16041--16111
12
5.8
12
74
19
58
18
8
0
73
1.08
16043--16076
11
3.1
11
95
0
59
14
11
0
73
1.10
16054--16102
15
3.4
14
75
8
53
20
8
0
71
1.11
16016--16111
39
2.4
39
80
14
108
15
11
1
71
1.19
16054--16104
14
3.6
14
80
14
61
21
7
0
70
1.12
16441--16477
13
2.7
13
91
8
56
5
5
5
83
0.90
16597--16693
30
3.2
30
72
8
99
28
16
26
27
1.97
20420--20466
23
2.1
23
84
7
62
51
12
4
31
1.59
25199--25231
9
3.8
9
88
4
50
81
0
0
18
0.68
26578--26629
23
2.3
22
75
21
54
9
23
1
65
1.32

Tables:   1

The End!