Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold221

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8336
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28


Found at i:1590 original size:21 final size:22

Alignment explanation


    Indices: 1556--1599  Score: 81
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       1546 TGTTAGTTAG

                                  
       1556 ATGGTGGAACCAAATTGCATAA
          1 ATGGTGGAACCAAATTGCATAA

                                  
       1578 ATGGTGG-ACCAAATTGCATAA
          1 ATGGTGGAACCAAATTGCATAA

             
       1599 A
          1 A

       1600 ACGGCTAAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  21   15  0.68
  22    7  0.32

ACGTcount: A:0.41, C:0.14, G:0.23, T:0.23


Consensus pattern (22 bp):   
ATGGTGGAACCAAATTGCATAA
Done.