genome.fa.s113.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2844
Parameters: 2 7 7 80 10 50 1000
Length:  72188

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4486--4656	45	3.7	46	75	15	174	22	19	28	29	1.98
4483--4651	93	1.8	92	91	3	277	21	20	28	29	1.98
6368--6401	16	2.1	16	88	5	50	76	11	11	0	1.02
8683--8717	18	1.9	18	88	0	52	42	0	8	48	1.33
13866--14175	46	6.6	48	74	15	224	27	18	30	23	1.98
13863--14168	94	3.3	94	77	8	311	27	18	30	23	1.98
25985--26067	43	1.9	43	87	4	123	33	24	18	24	1.96
27373--27525	83	1.8	83	98	0	297	37	22	9	30	1.86
28924--28963	21	1.9	21	89	0	62	37	5	10	47	1.59
53080--53127	22	2.0	23	84	15	62	31	4	12	52	1.58
58856--58896	20	2.2	19	86	8	57	31	9	19	39	1.84
58939--59007	25	2.8	25	90	0	102	27	24	23	24	2.00
58938--59021	25	3.4	25	79	12	68	30	22	22	23	1.99
59226--59303	31	2.5	31	93	0	129	32	17	25	24	1.97
60924--60995	24	3.0	24	91	0	117	22	27	29	20	1.99
62302--62366	32	2.0	32	96	0	121	30	21	6	41	1.77
64402--64449	15	3.3	15	73	5	53	29	0	27	43	1.55
64396--64439	14	3.1	14	74	6	52	27	0	34	38	1.57
64396--64455	29	2.1	29	93	0	102	28	0	30	41	1.56
65430--65474	14	3.3	14	84	6	65	48	13	0	37	1.42
66386--66445	29	2.1	29	93	0	102	41	30	0	28	1.56
66392--66439	15	3.3	15	73	5	53	43	27	0	29	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66661--66707	13	3.6	13	80	11	60	78	6	4	10	1.06
66686--66720	18	1.9	19	88	11	56	74	8	5	11	1.22
71004--71187	39	4.6	41	82	11	206	24	22	27	25	2.00
71004--71187	79	2.3	80	83	8	225	24	22	27	25	2.00
71057--71220	78	2.1	79	83	7	201	26	21	27	25	1.99

Tables:   1

The End!