Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1327
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44125
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Found at i:11885 original size:41 final size:40
Alignment explanation
Indices: 11719--11900 Score: 255
Period size: 40 Copynumber: 4.5 Consensus size: 40
11709 ACCCAAGTAT
* *
11719 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
11758 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
11798 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
11838 CTTCGGGACTTAGCCCGG-TATAG-CAACTACTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA--GCACAAATGC
11879 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
11901 CATCCGAATA
Statistics
Matches: 129, Mismatches: 8, Indels: 9
0.88 0.05 0.06
Matches are distributed among these distances:
38 1 0.01
39 20 0.16
40 76 0.59
41 29 0.22
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:16850 original size:47 final size:47
Alignment explanation
Indices: 16772--17413 Score: 1036
Period size: 47 Copynumber: 13.6 Consensus size: 47
16762 CCCTTCGGGA
* * * * * *
16772 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
16819 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
16866 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
16913 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
16960 CTTATCACATATATACACTTTCAAATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
17007 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17056 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17102 CTTATCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
17148 CTTATCCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17196 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
17243 CTTATCAGATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATC--ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
17292 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17341 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
17388 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
17414 CACAATTATC
Statistics
Matches: 556, Mismatches: 30, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
45 19 0.03
46 38 0.07
47 331 0.60
48 33 0.06
49 135 0.24
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:21024 original size:40 final size:40
Alignment explanation
Indices: 20979--21219 Score: 308
Period size: 40 Copynumber: 6.0 Consensus size: 40
20969 CGAATACACG
* * * *
20979 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * * *
21019 ACACCAGCACGAATGCTCTTCGAGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCG-GGACTTAGCCCGGATACA
* *
21059 TTACTAGCACT-AATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCA-TGAATGCTCTTCGGGACTTAGCCCGGATACA
*
21099 TCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
21139 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
21179 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
21218 TC
1 TC
21220 GTCGAGACCT
Statistics
Matches: 176, Mismatches: 21, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
39 6 0.03
40 168 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:23522 original size:47 final size:47
Alignment explanation
Indices: 23444--24088 Score: 1056
Period size: 47 Copynumber: 13.6 Consensus size: 47
23434 CCCTTCGGGA
* * * * * *
23444 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23491 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23538 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23585 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23632 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23681 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23730 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23777 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23824 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23871 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23918 CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23967 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24016 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24063 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
24089 CACAATTATC
Statistics
Matches: 566, Mismatches: 28, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 380 0.67
49 186 0.33
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23874 original size:239 final size:237
Alignment explanation
Indices: 23444--24088 Score: 1105
Period size: 239 Copynumber: 2.7 Consensus size: 237
23434 CCCTTCGGGA
* * * * *
23444 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
23507 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
23572 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
23637 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23681 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
23746 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
23811 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
23876 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23918 CTTATCACATATATATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
* *
23983 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
* *
24048 CATCGGCCATTAGGCCTTATCACATATATATACATTCACAT
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
24089 CACAATTATC
Statistics
Matches: 388, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
237 103 0.27
238 1 0.00
239 284 0.73
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (237 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23956 original size:286 final size:286
Alignment explanation
Indices: 23444--24088 Score: 1164
Period size: 286 Copynumber: 2.3 Consensus size: 286
23434 CCCTTCGGGA
* * * * * * * *
23444 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23509 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
*
23574 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
23639 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
196 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
23704 CACATTCATCACATTGGCCATTCGGC
261 CACATTCATCACATTGGCCATTCGGC
*
23730 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
23795 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
23860 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
23925 CATATATATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCACATATATATACACTTT
196 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
23990 CACATTCATCACATTGGCCATTCGGC
261 CACATTCATCACATTGGCCATTCGGC
*
24016 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
24081 ATTCACAT
66 TTTCACAT
24089 CACAATTATC
Statistics
Matches: 344, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
286 344 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (286 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
CACATTCATCACATTGGCCATTCGGC
Found at i:28834 original size:16 final size:16
Alignment explanation
Indices: 28815--28845 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
28805 CTTCTTCGCT
28815 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
28831 TACTTACTTACTTAA
1 TACTCACTTACTTAA
28846 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:28851 original size:20 final size:20
Alignment explanation
Indices: 28813--28851 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
28803 AACTTCTTCG
* *
28813 CTTACTCACTTACTTAAATA
1 CTTACTCACTTAATCAAATA
*
28833 CTTACTTACTTAATCAAAT
1 CTTACTCACTTAATCAAAT
28852 TTATTAATAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (20 bp):
CTTACTCACTTAATCAAATA
Found at i:29165 original size:53 final size:54
Alignment explanation
Indices: 29038--29292 Score: 265
Period size: 55 Copynumber: 4.8 Consensus size: 54
29028 ACACGGGTAC
* * * * *
29038 CTTACCATTGCCATGACTTGTCATGGTTTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
* ** * * *
29087 CTTACCATTGCCATATCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-GA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
29140 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * *
29195 CTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
*
29248 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
29293 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 35 0.20
50 1 0.01
52 2 0.01
53 47 0.27
54 10 0.06
55 74 0.43
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:29229 original size:108 final size:110
Alignment explanation
Indices: 29083--29285 Score: 295
Period size: 108 Copynumber: 1.9 Consensus size: 110
29073 GTATCCTTTT
* * * *
29083 GAAACTTACCATTGCCATATCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-GA-CTCACC
1 GAAACTTACCAATGCCATACCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACC
29146 AA-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 AATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* * * *
29191 GAAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTACCA
1 GAAACTTACCAATGCCATACCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCA
*
29256 ATTTCCATGCCTTGGCATGGTCTTACATGG
66 ATTGCCATGCCTTGGCATGGTCTTACATGG
29286 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 7 0.08
110 27 0.33
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATGCCATACCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCA
ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:30201 original size:27 final size:27
Alignment explanation
Indices: 30166--30366 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
30156 GTGGATAAGT
* *
30166 GGTAGAATTATCGAAATACCCCTGTAA
1 GGTAGAATTACCGAAATACCCCTGTAG
*
30193 GGTAAAATTACCGAAATACCCCTGTAG
1 GGTAGAATTACCGAAATACCCCTGTAG
*** *
30220 GGTAGAATTATTAAAATACCCCTGTAA
1 GGTAGAATTACCGAAATACCCCTGTAG
* * *
30247 GGTACAATTACTGAAATACCCCTGCAG
1 GGTAGAATTACCGAAATACCCCTGTAG
* * *
30274 GATAGAATTACCGAAATACCCTTATAG
1 GGTAGAATTACCGAAATACCCCTGTAG
* *
30301 GGTAGAAATACCGAAATACCCCTATAG
1 GGTAGAATTACCGAAATACCCCTGTAG
* *
30328 GGTAGAATTACCGAGATACCCTTGTAG
1 GGTAGAATTACCGAAATACCCCTGTAG
*
30355 GGTAAAATTACC
1 GGTAGAATTACC
30367 ATTTTGCCCC
Statistics
Matches: 147, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (27 bp):
GGTAGAATTACCGAAATACCCCTGTAG
Found at i:31062 original size:27 final size:26
Alignment explanation
Indices: 31018--31069 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
31008 CTCGCTACAA
*
31018 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
31045 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
31070 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:36988 original size:46 final size:46
Alignment explanation
Indices: 36938--37066 Score: 215
Period size: 46 Copynumber: 2.8 Consensus size: 46
36928 TGATTGAGCA
*
36938 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
36984 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
37030 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37067 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 2 0.03
46 77 0.97
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Done.