Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1549

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 25898
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:23519 original size:42 final size:42

Alignment explanation


    Indices: 23460--23545  Score: 163
    Period size: 42  Copynumber: 2.0  Consensus size: 42

      23450 TTGAAAAGTA

                                                      
      23460 TAAGAACTTAGAATGATCCAATTGAAAAATATAAACTAAATC
          1 TAAGAACTTAGAATGATCCAATTGAAAAATATAAACTAAATC

                                            *         
      23502 TAAGAACTTAGAATGATCCAATTGAAAAATATGAACTAAATC
          1 TAAGAACTTAGAATGATCCAATTGAAAAATATAAACTAAATC

              
      23544 TA
          1 TA

      23546 CAAACATATG


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  42   43  1.00

ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27


Consensus pattern (42 bp):   
TAAGAACTTAGAATGATCCAATTGAAAAATATAAACTAAATC
Done.