Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2869
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 29394
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Found at i:1304 original size:40 final size:40
Alignment explanation
Indices: 1220--1403 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
1210 TTGAATGCTG
* * * *
1220 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
1259 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
1300 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
*
1340 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
*
1380 TCCGGGTTAAGTCCTGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
1404 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:1357 original size:80 final size:81
Alignment explanation
Indices: 1220--1400 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
1210 TTGAATGCTG
* * *
1220 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
*
1284 TGTGCGAGTTATT-AAT
66 TGTGCGAGTT-TTAAAA
**
1300 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
1361 ATTTGTGCGAGTTTTAAAA
63 ATTTGTGCGAGTTTTAAAA
*
1380 TCCGGGTTAAGTCCTGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
1401 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTTTAAAA
Found at i:8903 original size:50 final size:48
Alignment explanation
Indices: 8784--8969 Score: 167
Period size: 50 Copynumber: 3.8 Consensus size: 48
8774 ATGTCAAAGG
* * * *
8784 CATGTCCTAGACATGGTCTTACATGGGATGTT-TCTTGTACTGCCAATGT
1 CATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CTGCCAATGC
* * * *
8833 CATATCCCAGATATGGTCTTACATGGGAGTTCACATATCGGTGCCCATGC
1 CATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATC--TGCCAATGC
** ** * *
8883 CATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCACTATGCCAACGC
1 CATGTCCCAGACATGGTCTTACATGGGAGTTCTCAT-A-TCTGCCAATGC
**
8933 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 CATGTCCCAGACATGGTCTTACATGGGAGTTCTCATA
8970 ACCTCAATGA
Statistics
Matches: 112, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
48 4 0.04
49 29 0.26
50 77 0.69
51 1 0.01
52 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCTGCCAATGC
Found at i:8992 original size:56 final size:50
Alignment explanation
Indices: 8882--9013 Score: 156
Period size: 50 Copynumber: 2.5 Consensus size: 50
8872 GGTGCCCATG
** * *
8882 CCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCACTATGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCAATATGCCAACA
*
8932 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGATGCCAATA
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTC---A--TCAAT-ATGCCAACA
*
8988 CCATGTCCCAGACATAGTCTTACATG
1 CCATGTCCCAGACATGGTCTTACATG
9014 TGATCTCTTT
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
50 33 0.47
53 1 0.01
55 4 0.06
56 32 0.46
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCAATATGCCAACA
Found at i:10698 original size:56 final size:56
Alignment explanation
Indices: 10612--10722 Score: 195
Period size: 56 Copynumber: 2.0 Consensus size: 56
10602 GTTGTTCCTA
* *
10612 ACACTACCCACACTCGCTACAGATGTAGCTTGAGGTTTTGAGCTCGAATGATGCTG
1 ACACTACCCACACTCGCTACAGATGTAGCTTCAGGTTTTGAGCTCGAATAATGCTG
*
10668 ACACTACCCACACTCGCTATAGATGTAGCTTCAGGTTTTGAGCTCGAATAATGCT
1 ACACTACCCACACTCGCTACAGATGTAGCTTCAGGTTTTGAGCTCGAATAATGCT
10723 TTCCTTATCT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (56 bp):
ACACTACCCACACTCGCTACAGATGTAGCTTCAGGTTTTGAGCTCGAATAATGCTG
Found at i:13738 original size:51 final size:50
Alignment explanation
Indices: 13646--13829 Score: 174
Period size: 51 Copynumber: 3.6 Consensus size: 50
13636 CCGGTTCACA
* * ** * * *
13646 TAGTAGCTTGCATATAGTACTACACTTGTGACCATCA-CTATCAGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CA-AAGCTATCTGGTACACG
* * *
13697 TAGTAGCCTACACATAGTACTACACACGTGATCAAAGCTATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CAAAGCTATCTGGTACACG
* * ** * *
13748 TAGTAGCCTGCACATAGTACTACACATGCGACCTATC-ATTCTGGTGCACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACAAAGCTA-TCTGGTACACG
13798 TAGTAGCCTGCACATAGTACTACACACGTGAC
1 TAGTAGCCTGCACATAGTACTACACACGTGAC
13830 CATCACTTTC
Statistics
Matches: 109, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
49 1 0.01
50 42 0.39
51 66 0.61
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACAAAGCTATCTGGTACACG
Found at i:13812 original size:101 final size:102
Alignment explanation
Indices: 13644--13828 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 102
13634 TACCGGTTCA
* * * *
13644 CATAGTAGCTTGCATATAGTACTACACTTGTGACCATCACTATCAGATACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCAGATACACGTAGTAGCCTACA
13709 CATAGTACTACACACGTGATCAAAGCTATCTGGTACG
66 CATAGTACTACACACGTGATCAAAGCTATCTGGTACG
* * * *
13746 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTGCACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCAGATACACGTAGTAGCCTAC
13809 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
13829 CCATCACTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
101 38 0.51
102 32 0.43
103 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCAGATACACGTAGTAGCCTACA
CATAGTACTACACACGTGATCAAAGCTATCTGGTACG
Found at i:13851 original size:101 final size:102
Alignment explanation
Indices: 13639--13866 Score: 255
Period size: 101 Copynumber: 2.2 Consensus size: 102
13629 AATGATACCG
* * * *
13639 GTTCACATAGTAGCTTGCATATAGTACTACACTTGTGACCATCACTATCAGATACACGTAGTAGC
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCAGATACACGTAGTAGC
* **
13704 CTACACATAGTACTACACACGTGATCAAAGCTATCTG
66 CTACACATAGTACTACACACGTGACCAAAGCTATCAC
* * * * *
13741 GTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTGCACGTAGTAG
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCAGATACACGTAGTAG
* * *
13804 CCTGCACATAGTACTACACACGTGACCATCA-CTTTCAC
65 CCTACACATAGTACTACACACGTGACCA-AAGCTATCAC
* * *
13842 TTTCACATAGTGGCCTACACATAGT
1 GTTCACATAGTAGCCTGCACATAGT
13867 CCATGCCACA
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
101 64 0.62
102 36 0.35
103 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (102 bp):
GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCAGATACACGTAGTAGC
CTACACATAGTACTACACACGTGACCAAAGCTATCAC
Found at i:13969 original size:8 final size:10
Alignment explanation
Indices: 13939--13963 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
13929 CAATCGGGAA
13939 TTTTCTCATT
1 TTTTCTCATT
13949 TTTTCTCATT
1 TTTTCTCATT
13959 TTTTC
1 TTTTC
13964 CTTTTTCACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTCTCATT
Found at i:16613 original size:41 final size:42
Alignment explanation
Indices: 16534--16614 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 42
16524 CGTTTTCTCT
**
16534 ATGCCATAGTCCAACTATAGTCTTACACATATTTACATATTG
1 ATGCCATAGTCCAACTATAGTCTTACACATATGCACATATTG
* *
16576 ATGCCATAG-CCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGTCCAACTATAGTCTTACACA-TATGCACATAT
16615 CACACCGATG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 23 0.68
42 11 0.32
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATAGTCCAACTATAGTCTTACACATATGCACATATTG
Found at i:19166 original size:16 final size:16
Alignment explanation
Indices: 19145--19176 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
19135 GTTTTGTTGC
*
19145 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
19161 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
19177 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:19373 original size:46 final size:43
Alignment explanation
Indices: 19300--19398 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 43
19290 AATAATAACA
*
19300 GATACACGGTGGATTCAGCACACAGCAACCACCCTTTGTAATCAAT
1 GATAC-CGGTGGATTCAGCACACAGCAACCA-CC-TTATAATCAAT
* *
19346 GATATCCGGTGGGA-TCAGCACATAGCAACCACCTTATAATTAAT
1 GATA-CCGGT-GGATTCAGCACACAGCAACCACCTTATAATCAAT
19390 GATACCGGT
1 GATACCGGT
19399 TCACATAGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.10
44 13 0.27
45 2 0.04
46 24 0.50
47 4 0.08
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.23
Consensus pattern (43 bp):
GATACCGGTGGATTCAGCACACAGCAACCACCTTATAATCAAT
Found at i:19462 original size:51 final size:51
Alignment explanation
Indices: 19394--19594 Score: 257
Period size: 51 Copynumber: 4.0 Consensus size: 51
19384 ATTAATGATA
* * *
19394 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACTAT
* *
19445 CCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGA--AGCTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTAT
** * *
19496 CCGGTATGCGTAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-T
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTAT
*
19546 CTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
19595 TTCACTTTCA
Statistics
Matches: 128, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
49 4 0.03
50 42 0.33
51 79 0.62
52 2 0.02
53 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (51 bp):
CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACTAT
Found at i:19582 original size:101 final size:102
Alignment explanation
Indices: 19404--19586 Score: 316
Period size: 101 Copynumber: 1.8 Consensus size: 102
19394 CCGGTTCACA
*
19404 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCACA
1 TAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCACA
19469 TAGTACTACACACGTGATCGAAGCTATCCGGTATGCG
66 TAGTACTACACACGTGATCGAAGCTATCCGGTATGCG
* *
19506 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTGCAC
1 TAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAGCCTGCAC
19569 ATAGTACTACACACGTGA
65 ATAGTACTACACACGTGA
19587 CCATCACTTT
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
101 40 0.52
102 33 0.43
103 4 0.05
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (102 bp):
TAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCACA
TAGTACTACACACGTGATCGAAGCTATCCGGTATGCG
Found at i:22434 original size:42 final size:42
Alignment explanation
Indices: 22354--22435 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
22344 CGTTTTCTCT
* **
22354 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
22396 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
22436 CACATCGATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:25210 original size:16 final size:16
Alignment explanation
Indices: 25189--25220 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25179 TGTTTGTTGC
*
25189 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
25205 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
25221 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:25416 original size:46 final size:43
Alignment explanation
Indices: 25343--25441 Score: 128
Period size: 46 Copynumber: 2.2 Consensus size: 43
25333 AATAATAACA
*
25343 GATACACGGTGGATTCAGCACATAGCAACCACCCTTTGTAATCAAT
1 GATAC-CGGTGGATTCAGCACATAGCAACCA-CC-TTATAATCAAT
*
25389 GATATCCGGTGGGA-TCAGCACATAGCAACCACCTTATAATTAAT
1 GATA-CCGGT-GGATTCAGCACATAGCAACCACCTTATAATCAAT
25433 GATACCGGT
1 GATACCGGT
25442 TCACATAGTA
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
43 5 0.10
44 13 0.27
45 2 0.04
46 25 0.51
47 4 0.08
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (43 bp):
GATACCGGTGGATTCAGCACATAGCAACCACCTTATAATCAAT
Found at i:25496 original size:49 final size:50
Alignment explanation
Indices: 25437--25584 Score: 187
Period size: 50 Copynumber: 3.0 Consensus size: 50
25427 ATTAATGATA
* *
25437 CCGGTTCACATAGTA-CCTGAACATAGTACTACACATGTGA-CATCACTAT
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACT-T
* *
25486 CCGGTACACATAGTAGCCTGCACATAGTACTACATATGCGACCTATCA-TT
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTT
* * *
25536 CTGGTACACGTAGTAGCCT-CACATAGTACTACACACGTGACCATCACTT
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTT
25585 TCACTTTCAC
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
48 4 0.05
49 36 0.42
50 40 0.47
51 2 0.02
52 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (50 bp):
CCGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTT
Found at i:27192 original size:268 final size:268
Alignment explanation
Indices: 26715--27254 Score: 1026
Period size: 268 Copynumber: 2.0 Consensus size: 268
26705 AGTTGTCAGG
*
26715 AGATGGTCACCTCAAAGAATAGTGGAAGTATTACTTTTATATATTTTCAAGATTTTAATAATGGC
1 AGATGGTCACCTCAAAGAATAGTGGAAGTATTACTTATATATATTTTCAAGATTTTAATAATGGC
*
26780 TACGATGAACCCAAAATCTTTATGGGCTCGTGTTATTAAAGGGCTCTGCTCTCTAAATTGAAACC
66 TACGATGAACCCAAAATCTTTATGGGCTCGTGTTATTAAAGGGCTCTGCTCTCCAAATTGAAACC
* * *
26845 TTCTTGAGGTTGAAGGAAAACCTAACATATCTTGGTCTTTGCATAGTTTATACAAAGGGACCAAA
131 TTCTTGAGGTTGAAGGAAAACCTAACAGATCGTGGTCTTTACATAGTTTATACAAAGGGACCAAA
26910 CTGTTAAAATCAGGAACTAAATGAAGCATATGTAATGGTGTAACATCCTAATTATGCATGATAAA
196 CTGTTAAAATCAGGAACTAAATGAAGCATATGTAATGGTGTAACATCCTAATTATGCATGATAAA
26975 TAGATTTC
261 TAGATTTC
26983 AGATGGTCACCTCAAAGAATAGTGGAAGTATTACTTATATATATTTTCAAGATTTTAATAATGGC
1 AGATGGTCACCTCAAAGAATAGTGGAAGTATTACTTATATATATTTTCAAGATTTTAATAATGGC
27048 TACGATGAACCCAAAATCTTTATGGGCTCGTGTTATTAAAGGGCTCTGCTCTCCAAATTGAAACC
66 TACGATGAACCCAAAATCTTTATGGGCTCGTGTTATTAAAGGGCTCTGCTCTCCAAATTGAAACC
*
27113 TTCTTGTGGTTGAAGGAAAACCTAACAGATCGTGGTCTTTACATAGTTTATACAAAGGGACCAAA
131 TTCTTGAGGTTGAAGGAAAACCTAACAGATCGTGGTCTTTACATAGTTTATACAAAGGGACCAAA
27178 CTGTTAAAATCAGGAACTAAATGAAGCATATGTAATGGTGTAACATCCTAATTATGCATGATAAA
196 CTGTTAAAATCAGGAACTAAATGAAGCATATGTAATGGTGTAACATCCTAATTATGCATGATAAA
27243 TAGATTTC
261 TAGATTTC
27251 AGAT
1 AGAT
27255 TTTTAGGATG
Statistics
Matches: 266, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
268 266 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (268 bp):
AGATGGTCACCTCAAAGAATAGTGGAAGTATTACTTATATATATTTTCAAGATTTTAATAATGGC
TACGATGAACCCAAAATCTTTATGGGCTCGTGTTATTAAAGGGCTCTGCTCTCCAAATTGAAACC
TTCTTGAGGTTGAAGGAAAACCTAACAGATCGTGGTCTTTACATAGTTTATACAAAGGGACCAAA
CTGTTAAAATCAGGAACTAAATGAAGCATATGTAATGGTGTAACATCCTAATTATGCATGATAAA
TAGATTTC
Done.