genome.fa.s1167.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1626
Parameters: 2 7 7 80 10 50 1000
Length:  23674

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1525--1723	27	7.6	27	82	6	203	27	14	28	29	1.95
9569--9772	27	7.6	27	85	4	241	27	14	27	29	1.95
10944--11003	19	3.0	21	83	13	74	36	8	13	41	1.74
10944--10986	21	2.2	20	91	8	70	30	9	11	48	1.71
10962--11093	17	7.6	18	75	10	62	42	9	11	37	1.73
11056--11093	17	2.2	17	100	0	76	47	5	5	42	1.48
11111--11177	18	3.8	18	70	5	57	35	11	14	37	1.84
11121--11187	34	1.9	34	87	3	98	32	11	14	40	1.83
11112--11176	17	3.8	17	72	11	60	36	12	13	36	1.83
11240--11287	17	2.7	18	76	23	57	41	10	16	31	1.82
11873--11927	24	2.3	24	90	9	94	0	25	10	63	1.27
11885--11928	21	2.1	21	86	0	61	0	22	9	68	1.18
11915--11952	15	2.5	15	87	12	51	0	7	13	78	0.94
12085--12133	12	4.2	12	82	12	57	0	22	0	77	0.77
12064--12124	10	5.9	10	78	16	54	1	21	0	77	0.86
12063--12133	22	3.0	22	80	13	72	1	22	0	76	0.87
12745--12780	15	2.4	16	90	9	58	25	0	2	72	0.98
13022--13831	54	15.0	54	94	2	1407	37	17	15	29	1.91
13022--13831	217	3.8	215	94	2	1412	37	17	15	29	1.91
13776--14538	72	10.6	72	94	1	1298	34	18	16	31	1.93
13776--14538	287	2.6	288	94	1	1307	34	18	16	31	1.93
14535--14570	18	2.0	18	88	0	54	66	5	11	16	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14463--14628	91	1.8	90	87	7	246	38	19	15	26	1.91
14554--14862	123	2.5	121	92	3	512	37	22	14	26	1.92

Tables:   1

The End!