genome.fa.s1190.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold253
Parameters: 2 7 7 80 10 50 1000
Length:  42741

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2115--2509	47	8.6	46	81	12	413	32	7	29	30	1.85
2115--2509	139	2.9	141	82	12	459	32	7	29	30	1.85
3933--4216	120	2.4	120	84	9	377	24	20	27	27	1.99
3933--4216	38	7.2	39	83	9	319	24	20	27	27	1.99
8304--8708	47	8.6	47	92	2	659	33	7	30	28	1.86
11132--11248	47	2.5	47	98	1	227	28	19	29	22	1.98
11132--11437	47	6.5	47	78	11	188	27	18	30	22	1.98
11132--11538	47	8.6	46	73	14	175	27	19	29	23	1.98
26432--26460	13	2.2	13	100	0	58	24	31	31	13	1.94
33595--33801	27	7.6	27	88	4	281	27	13	27	31	1.94
33595--33801	55	3.8	55	92	1	335	27	13	27	31	1.94
41634--41726	18	5.5	18	69	16	56	54	45	0	0	0.99
41606--41711	18	5.8	19	73	21	75	54	44	0	0	1.06
41615--41707	38	2.5	38	83	8	104	54	44	1	0	1.07
41639--41707	35	2.0	35	85	5	95	57	42	0	0	0.98
41634--41726	32	2.8	33	75	15	102	54	45	0	0	0.99
41701--41739	13	2.9	14	85	14	55	43	56	0	0	0.99
41686--41773	27	3.2	28	72	13	83	45	52	1	1	1.15
41686--41781	40	2.3	41	81	12	108	47	50	1	1	1.15
41809--41908	3	30.7	3	72	18	58	59	41	0	0	0.98
41802--41906	11	9.7	11	69	21	62	58	41	0	0	0.98
41809--41908	24	4.2	23	73	13	87	59	41	0	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41803--41907	55	1.9	55	81	11	126	59	40	0	0	0.98
41953--42015	14	4.1	14	73	23	56	55	44	0	0	0.99
41921--42022	34	2.7	37	76	18	113	54	44	0	0	1.06
41932--42023	20	4.9	20	67	20	65	56	43	0	0	0.99
42012--42056	21	2.0	21	83	8	54	46	53	0	0	1.00
41932--42038	36	2.9	36	72	16	96	54	45	0	0	0.99
42261--42352	26	3.3	26	71	25	82	29	29	14	27	1.95

Tables:   1

The End!