Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 109 of 311
Found at i:36025528 original size:77 final size:77
Alignment explanation
Indices: 36025397--36025573 Score: 266
Period size: 77 Copynumber: 2.3 Consensus size: 77
36025387 ACAAAGCATG
* *
36025397 CGGGACTTTAAGCTCGGATATAATACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACAC
1 CGGGAC-TT-AGCCCGGATAT-ACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACAC
36025462 CAGCACGAATGCCTT
63 CAGCACGAATGCCTT
* *
36025477 CGGGACTTAGCCCGGATATACACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATACACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACACCA
36025541 GCACGAATGCCTT
65 GCACGAATGCCTT
*
36025554 CGGGACTTGGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
36025574 ATTCTCCATT
Statistics
Matches: 91, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
77 61 0.67
78 22 0.24
79 2 0.02
80 6 0.07
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.19
Consensus pattern (77 bp):
CGGGACTTAGCCCGGATATACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACACCAG
CACGAATGCCTT
Found at i:36033162 original size:24 final size:24
Alignment explanation
Indices: 36033088--36033223 Score: 105
Period size: 24 Copynumber: 5.6 Consensus size: 24
36033078 TTTAAAGGTC
* *
36033088 CGCACACATAGTGCTCTTACTCAT-T
1 CGCACACATAGTGC-CATA-TAATCT
** *
36033113 CGCACACATAGTGCCACGT-TTCCT
1 CGCACACATAGTGCCATATAAT-CT
* *
36033137 CGCATACATAGTGCTATATAATCT
1 CGCACACATAGTGCCATATAATCT
* *
36033161 CGCACACATAGTGCCATATAGTTTT
1 CGCACACATAGTGCCATATA-ATCT
* ** *
36033186 TGCACACATAGTGCCGCATAACCT
1 CGCACACATAGTGCCATATAATCT
36033210 CGCACACATAGTGC
1 CGCACACATAGTGC
36033224 TGAAATTTCT
Statistics
Matches: 87, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 51 0.59
25 34 0.39
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (24 bp):
CGCACACATAGTGCCATATAATCT
Found at i:36044857 original size:13 final size:13
Alignment explanation
Indices: 36044812--36044859 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
36044802 CCTTTATAGG
36044812 TACAGATATAGATA
1 TACAGA-ATAGATA
*
36044826 -ACAGAATCAAATA
1 TACAGAAT-AGATA
*
36044839 TGCAGAATAGATA
1 TACAGAATAGATA
36044852 TACAGAAT
1 TACAGAAT
36044860 CCTATCCCCC
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
12 2 0.07
13 20 0.71
14 6 0.21
ACGTcount: A:0.52, C:0.10, G:0.15, T:0.23
Consensus pattern (13 bp):
TACAGAATAGATA
Found at i:36049229 original size:24 final size:24
Alignment explanation
Indices: 36049202--36049249 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36049192 CAAATTATCC
36049202 CCTAGGCTCGTAAAATGAAATGTG
1 CCTAGGCTCGTAAAATGAAATGTG
36049226 CCTAGGCTCGTAAAATGAAATGTG
1 CCTAGGCTCGTAAAATGAAATGTG
36049250 TTCATTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (24 bp):
CCTAGGCTCGTAAAATGAAATGTG
Found at i:36053261 original size:27 final size:27
Alignment explanation
Indices: 36053202--36053254 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
36053192 ACCCCTTGCT
36053202 GATGAAATGACTATTATACCCCTATGA
1 GATGAAATGACTATTATACCCCTATGA
* *
36053229 GGTGAAGTGACTGA-TATACCCCTATG
1 GATGAAATGACT-ATTATACCCCTATG
36053255 TTATGAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (27 bp):
GATGAAATGACTATTATACCCCTATGA
Found at i:36059795 original size:40 final size:40
Alignment explanation
Indices: 36059690--36059905 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
36059680 CGGATGATAA
* *
36059690 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
36059730 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
36059769 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
**
36059809 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
**
36059849 CGGGCTAAGTCCCGAAGGCATTTAAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
36059889 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
36059906 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 53 0.32
40 110 0.67
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:36059864 original size:80 final size:80
Alignment explanation
Indices: 36059690--36059905 Score: 298
Period size: 79 Copynumber: 2.7 Consensus size: 80
36059680 CGGATGATAA
* *
36059690 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGT-CCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTG
**
36059753 TGCGAGTTACTAATTC
65 TGCGAACTACTAATTC
36059769 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
36059834 GCGAACTACT-ATATC
66 GCGAACTACTAAT-TC
** * *
36059849 CGGGCTAAGTCCCGAAGGCATTTAAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
36059906 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 64 0.51
80 61 0.49
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAACTACTAATTC
Found at i:36067725 original size:40 final size:40
Alignment explanation
Indices: 36067616--36067829 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
36067606 CGGATGATAA
* *
36067616 CGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
36067655 CGGGCTAAGT-CCGAA-GCATTTGTGCGAGTTACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
36067693 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
**
36067733 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
36067773 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* *
36067813 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
36067830 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 8, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
37 12 0.07
38 23 0.14
39 31 0.19
40 95 0.59
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:36070886 original size:42 final size:37
Alignment explanation
Indices: 36070835--36070912 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 37
36070825 ATCCGAATGA
*
36070835 TTTGTGCGAGTTATTAAATTCCGGGTTTAAGTCCCGAAGGCC
1 TTTGTGCGAG-TACT-AATTCCGGG--TAAGT-CCGAAGGCC
36070877 TTTGTGCGAGTACTAATTCCGGGTAAGTCCGAAGGC
1 TTTGTGCGAGTACTAATTCCGGGTAAGTCCGAAGGC
36070913 AATCGTGGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
37 8 0.23
38 5 0.14
40 9 0.26
41 3 0.09
42 10 0.29
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (37 bp):
TTTGTGCGAGTACTAATTCCGGGTAAGTCCGAAGGCC
Found at i:36073677 original size:24 final size:23
Alignment explanation
Indices: 36073629--36073673 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
36073619 CTTCAGTCTT
36073629 GAATGGATGAATCCGGCTTCTTGA
1 GAATGGATGAAT-CGGCTTCTTGA
*
36073653 GAATGGATGGAT-GGCTTCTTG
1 GAATGGATGAATCGGCTTCTTG
36073674 TGAGTAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
24 11 0.55
ACGTcount: A:0.22, C:0.13, G:0.33, T:0.31
Consensus pattern (23 bp):
GAATGGATGAATCGGCTTCTTGA
Found at i:36085521 original size:39 final size:40
Alignment explanation
Indices: 36085444--36085590 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
36085434 TAGCTCCTCG
* * *
36085444 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
36085484 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
36085523 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
36085563 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
36085591 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:36085601 original size:80 final size:80
Alignment explanation
Indices: 36085490--36085670 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
36085480 CTCATTCAAT
* * *
36085490 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
36085553 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
36085569 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
36085633 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
36085650 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
36085671 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:36085630 original size:40 final size:40
Alignment explanation
Indices: 36085487--36085670 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
36085477 TAACTCATTC
* *
36085487 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
36085527 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
36085567 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
36085607 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
36085648 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36085671 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:36089537 original size:60 final size:60
Alignment explanation
Indices: 36089386--36089548 Score: 145
Period size: 60 Copynumber: 2.7 Consensus size: 60
36089376 ACTAGGCCTA
* * *
36089386 AGCCCTATTTAGAAATCAGAGTTA-ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCAT
1 AGCCCTA-TTAGAAGTC-GAGATATATTGGGCC-TAGCCCATATCAATATCAATCTGGGCCAT
* * * * * * *
36089448 AGCCC-CTTA-CAGTATC-AGAGTATACTGGGCCTAGCCCATGTTAGTATCAATCTGGGCCGT
1 AGCCCTATTAGAAG--TCGAGA-TATATTGGGCCTAGCCCATATCAATATCAATCTGGGCCAT
*
36089508 AGCCCTATTAGAAGTCGAGATATATTGGGCCTTGCCCATAT
1 AGCCCTATTAGAAGTCGAGATATATTGGGCCTAGCCCATAT
36089549 TAACACAGTT
Statistics
Matches: 79, Mismatches: 15, Indels: 16
0.72 0.14 0.15
Matches are distributed among these distances:
59 3 0.04
60 54 0.68
61 15 0.19
62 7 0.09
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (60 bp):
AGCCCTATTAGAAGTCGAGATATATTGGGCCTAGCCCATATCAATATCAATCTGGGCCAT
Found at i:36089566 original size:20 final size:20
Alignment explanation
Indices: 36089541--36089580 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
36089531 ATTGGGCCTT
36089541 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTTGG
*
36089561 GCCCATTTCAATACAGTTGG
1 GCCCATTTCAACACAGTTGG
36089581 CCTATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
GCCCATTTCAACACAGTTGG
Found at i:36090995 original size:25 final size:22
Alignment explanation
Indices: 36090941--36090995 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
36090931 TTTCGGCTAG
36090941 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
36090963 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
36090988 AGGAAGAA
1 A-GAAGAA
36090996 TTCGGCACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:36092048 original size:25 final size:25
Alignment explanation
Indices: 36092020--36092082 Score: 126
Period size: 25 Copynumber: 2.5 Consensus size: 25
36092010 GAAGTGGCAA
36092020 GTGGCGTCACATGTGGGGCCCAGAG
1 GTGGCGTCACATGTGGGGCCCAGAG
36092045 GTGGCGTCACATGTGGGGCCCAGAG
1 GTGGCGTCACATGTGGGGCCCAGAG
36092070 GTGGCGTCACATG
1 GTGGCGTCACATG
36092083 CTTGACAAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.16, C:0.24, G:0.43, T:0.17
Consensus pattern (25 bp):
GTGGCGTCACATGTGGGGCCCAGAG
Found at i:36093388 original size:28 final size:29
Alignment explanation
Indices: 36093306--36093400 Score: 147
Period size: 29 Copynumber: 3.3 Consensus size: 29
36093296 AAAGCATGAC
36093306 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
36093335 TACGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
36093364 TATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
36093392 TATGCATGT
1 TATGAATGT
36093401 ATGTAGACTT
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 23 0.38
29 37 0.62
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.29
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:36093787 original size:227 final size:227
Alignment explanation
Indices: 36093387--36093842 Score: 849
Period size: 227 Copynumber: 2.0 Consensus size: 227
36093377 GGGCCTAGTG
36093387 GGCCATATGCATGTATGTAGACTTGTTTGGGCTTTGTAAGGGGTTTTGGGCTTAGTATCTGAAAC
1 GGCCATATGCATGTATGTAGACTTGTTTGGGCTTTGTAAGGGGTTTTGGGCTTAGTATCTGAAAC
*
36093452 TGCTTAAACAGACAGACAACTTAATTAATTTATTGCGACCATGGACGAGTCATAAGGTTAAGGTG
66 TGCTTAAACAGACAGACAACTTAATTAATTTATTGCAACCATGGACGAGTCATAAGGTTAAGGTG
*
36093517 TGGTAATGGGTATATGCATGTCTAGGATTGGATCTAGGGAGAGCTTGGTACTTAAGCAGTCTCAA
131 TGGTAATGGGTATATGCATGTCTAGGATTGGATCTAAGGAGAGCTTGGTACTTAAGCAGTCTCAA
*
36093582 TGACTCACCTTCTCTTCTCTAGAATCCTACCT
196 TGACTCACCTCCTCTTCTCTAGAATCCTACCT
36093614 GGCCATATGCATGTATGTAGACTTGTTTGGGCTTTGTAAGGGGTTTTGGGCTTAGTATCTGAAAC
1 GGCCATATGCATGTATGTAGACTTGTTTGGGCTTTGTAAGGGGTTTTGGGCTTAGTATCTGAAAC
* *
36093679 TGCTTAAACGGATAGACAACTTAATTAATTTATTGCAACCATGGACGAGTCATAAGGTTAAGGTG
66 TGCTTAAACAGACAGACAACTTAATTAATTTATTGCAACCATGGACGAGTCATAAGGTTAAGGTG
*
36093744 TGGTAATGGGTATATGCATGTCTAGGATTGGATCTAAGGAGAGCTTGGTACTTAAGCGGTCTCAA
131 TGGTAATGGGTATATGCATGTCTAGGATTGGATCTAAGGAGAGCTTGGTACTTAAGCAGTCTCAA
*
36093809 TGACTCACCTCCTCTTCTCTGGAATCCTACCT
196 TGACTCACCTCCTCTTCTCTAGAATCCTACCT
36093841 GG
1 GG
36093843 TGCATAGTAT
Statistics
Matches: 222, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
227 222 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (227 bp):
GGCCATATGCATGTATGTAGACTTGTTTGGGCTTTGTAAGGGGTTTTGGGCTTAGTATCTGAAAC
TGCTTAAACAGACAGACAACTTAATTAATTTATTGCAACCATGGACGAGTCATAAGGTTAAGGTG
TGGTAATGGGTATATGCATGTCTAGGATTGGATCTAAGGAGAGCTTGGTACTTAAGCAGTCTCAA
TGACTCACCTCCTCTTCTCTAGAATCCTACCT
Found at i:36101301 original size:28 final size:29
Alignment explanation
Indices: 36101219--36101313 Score: 147
Period size: 29 Copynumber: 3.3 Consensus size: 29
36101209 AAAGCATGAC
36101219 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
36101248 TACGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
36101277 TATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
36101305 TATGCATGT
1 TATGAATGT
36101314 ATGTAGACTT
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 23 0.38
29 37 0.62
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.29
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:36102408 original size:17 final size:18
Alignment explanation
Indices: 36102375--36102408 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36102365 TCTAAGGAAG
36102375 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
36102393 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
36102409 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:36110854 original size:17 final size:17
Alignment explanation
Indices: 36110832--36110865 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
36110822 TTTGCCGGTA
36110832 ACTATAGCTATAGTGAG
1 ACTATAGCTATAGTGAG
36110849 ACTATAGCTATAGTGAG
1 ACTATAGCTATAGTGAG
36110866 TCAACTAGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (17 bp):
ACTATAGCTATAGTGAG
Found at i:36112308 original size:55 final size:55
Alignment explanation
Indices: 36112237--36112367 Score: 199
Period size: 55 Copynumber: 2.4 Consensus size: 55
36112227 CGTGCCCTTA
* * *
36112237 GCCCGTGTGCAACACTGACTTTAAAACACGGCCATGCCACATGCCCGTGTGGCCT
1 GCCCGTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCT
* *
36112292 GCTCGTGTACAACACTGACTTTAAAACACGGCTATGACACACGCCCGTGTGGCCT
1 GCCCGTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCT
* *
36112347 GCCCGTGTTCAACACTAACTT
1 GCCCGTGTACAACACTGACTT
36112368 CAAATTTTAG
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 68 1.00
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (55 bp):
GCCCGTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCT
Found at i:36113233 original size:50 final size:49
Alignment explanation
Indices: 36113119--36113335 Score: 179
Period size: 49 Copynumber: 4.6 Consensus size: 49
36113109 AGATAAGTTA
* * * *
36113119 CCGATGCCATGTCCCGGACATTGTCTTACACTGGCTATCACCATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCACCATCCAGG
* * * *
36113168 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCCATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAC-CATCCAGG
* *
36113218 TCGATGCCATGTCCCAAACATGGTCTTACACT-G--A-CA-CATCTC-GTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCACCATC-CAG--G
* *
36113264 CTGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-A-CATCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCACCATC-C-AGG
*
36113310 ACGATG-CATGTCCCAGACATGGTCTT
1 CCGATGCCATGTCCCAGACATGGTCTT
36113336 TCATTGGCTC
Statistics
Matches: 138, Mismatches: 19, Indels: 24
0.76 0.10 0.13
Matches are distributed among these distances:
44 13 0.09
45 15 0.11
46 32 0.23
47 5 0.04
48 1 0.01
49 37 0.27
50 35 0.25
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (49 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCACCATCCAGG
Found at i:36113306 original size:46 final size:47
Alignment explanation
Indices: 36113121--36113344 Score: 201
Period size: 46 Copynumber: 4.7 Consensus size: 47
36113111 ATAAGTTACC
* * * *
36113121 GATGCCATGTCCCGGACATTGTCTTACACTGGCTATCACCATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA-CATC-TCGAGGCT
* * * * *
36113170 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCCATG-T
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-GCT-ACATCTCGAGGCT
* *
36113219 CGATGCCATGTCCCAAACATGGTCTTACACTGAC-ACATCTCGTA-GCT
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCG-AGGCT
36113266 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGAC-
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATCTCGAGG-CT
* *
36113312 GATG-CATGTCCCAGACATGGTCTTTCATTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
36113345 CTCATAATAT
Statistics
Matches: 146, Mismatches: 18, Indels: 25
0.77 0.10 0.13
Matches are distributed among these distances:
44 12 0.08
45 14 0.10
46 38 0.26
47 14 0.10
48 1 0.01
49 29 0.20
50 34 0.23
51 4 0.03
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTACATCTCGAGGCT
Found at i:36113306 original size:99 final size:99
Alignment explanation
Indices: 36113120--36113335 Score: 243
Period size: 99 Copynumber: 2.3 Consensus size: 99
36113110 GATAAGTTAC
** * *
36113120 CGATGCCATGTCCCGGACATTGTCTTACACTGGCTATCACCATCGAGGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCACCATCGAGGCCGATGCCATGTCCCAG
36113185 ACATGGTCTTACACTAGCTCTCGCATATCCATGT
66 ACATGGTCTTACACTAGCTCTCGCATATCCATGT
* *
36113219 CGATGCCATGTCCCAAACATGGTCTTACACTGAC-A-CATC-TCGTA-GCTGATG-CATGTCCCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCACCATCG-AGGCCGATGCCATGTCCCA
* * * * * *
36113279 GACAT-GTCTTACACTGGCT-T-ACATCTCGAGGA
65 GACATGGTCTTACACTAGCTCTCGCATATCCATGT
*
36113311 CGATG-CATGTCCCAGACATGGTCTT
1 CGATGCCATGTCCCAAACATGGTCTT
36113336 TCATTGGCTC
Statistics
Matches: 103, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
91 19 0.18
92 12 0.12
93 1 0.01
94 13 0.13
95 14 0.14
96 9 0.09
97 4 0.04
98 1 0.01
99 30 0.29
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (99 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCACCATCGAGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCTCGCATATCCATGT
Found at i:36113770 original size:30 final size:30
Alignment explanation
Indices: 36113730--36113786 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
36113720 AATTCACATA
* *
36113730 TTTGGTAAAATGACCATTTTGCCCCTAGAC
1 TTTGGCAAAATGACCATTTTACCCCTAGAC
36113760 TTTGGCAAAATGACCATTTTACCCCTA
1 TTTGGCAAAATGACCATTTTACCCCTA
36113787 TGCTCGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTACCCCTAGAC
Found at i:36126489 original size:38 final size:38
Alignment explanation
Indices: 36126437--36126509 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
36126427 GGAGATGTTG
* *
36126437 CATTCTTGAGTTCTAAAGTACGTGGGAATGATACTTTTT
1 CATTCTTGAGTTCTAAAGTACAT-GGAACGATACTTTTT
36126476 CATTC-TGAGTTCTAAAGTACATGGAACGATACTT
1 CATTCTTGAGTTCTAAAGTACATGGAACGATACTT
36126510 ACCTCTGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 11 0.34
38 16 0.50
39 5 0.16
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (38 bp):
CATTCTTGAGTTCTAAAGTACATGGAACGATACTTTTT
Found at i:36130270 original size:48 final size:47
Alignment explanation
Indices: 36130212--36130369 Score: 142
Period size: 48 Copynumber: 3.3 Consensus size: 47
36130202 CCATGTCCTC
*
36130212 GACATGGTCTTATATGAATC-CATATATCATCGCCGATGCCATATCCAA
1 GACATGGTCTTACATGAA-CACATATATCATCGCCGATGCCATATCC-A
* ** * * *
36130260 GACATGGTCTTACACTG-GCACGCATATCATCACCGACGCCATGTTCCA
1 GACATGGTCTTACA-TGAACACATATATCATCGCCGATGCCAT-ATCCA
* * * *
36130308 GACATGGTCTTACA-CAGGCACATATATCATCGCCGATGCTATGTCCCA
1 GACATGGTCTTACATGA-ACACATATATCATCGCCGATGCCATAT-CCA
36130356 GACATGGTCTTACA
1 GACATGGTCTTACA
36130370 CAGGCATATT
Statistics
Matches: 90, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
47 2 0.02
48 83 0.92
49 5 0.06
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (47 bp):
GACATGGTCTTACATGAACACATATATCATCGCCGATGCCATATCCA
Found at i:36130370 original size:48 final size:48
Alignment explanation
Indices: 36130232--36130375 Score: 207
Period size: 48 Copynumber: 3.0 Consensus size: 48
36130222 TATATGAATC
* * *
36130232 CATATATCATCGCCGATGCCATATCCAAGACATGGTCTTACACTGGCA
1 CATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
** * * *
36130280 CGCATATCATCACCGACGCCATGTTCCAGACATGGTCTTACACAGGCA
1 CATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
*
36130328 CATATATCATCGCCGATGCTATGTCCCAGACATGGTCTTACACAGGCA
1 CATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
36130376 TATTCAGCAT
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.24
Consensus pattern (48 bp):
CATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
Found at i:36138607 original size:12 final size:13
Alignment explanation
Indices: 36138579--36138611 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
36138569 TTATTTCTTT
36138579 TTCTCCATCTACC
1 TTCTCCATCTACC
*
36138592 TTCTCC-TCTTCC
1 TTCTCCATCTACC
36138604 TTCTCCAT
1 TTCTCCAT
36138612 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:36139736 original size:28 final size:28
Alignment explanation
Indices: 36139678--36139742 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
36139668 ATTTACTAGA
* *
36139678 ATACCCATATGTATGCAAAATTACCACT
1 ATACCCCTATGTATGCAAAATGACCACT
* **
36139706 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCACT
36139734 ATACCCCTA
1 ATACCCCTA
36139743 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.34, C:0.28, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCACT
Found at i:36139905 original size:26 final size:28
Alignment explanation
Indices: 36139848--36139936 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 28
36139838 AGGAAGCGTC
36139848 CTGGTGGCTA-TGCCACA-AATTATCTGTT
1 CTGGTGGC-ACTGCCACAGAA-TATCTGTT
* *
36139876 CTGGTGGCCCTGCCAC-GTA-ATCTGTT
1 CTGGTGGCACTGCCACAGAATATCTGTT
*
36139902 CTGGTGGCATTGCCACAGAATATCTGTAT
1 CTGGTGGCACTGCCACAGAATATCTGT-T
36139931 CTGGTG
1 CTGGTG
36139937 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
26 21 0.41
27 2 0.04
28 21 0.41
29 7 0.14
ACGTcount: A:0.18, C:0.24, G:0.26, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAGAATATCTGTT
Found at i:36145938 original size:40 final size:38
Alignment explanation
Indices: 36145882--36146137 Score: 262
Period size: 40 Copynumber: 6.4 Consensus size: 38
36145872 GATGATAACG
* *
36145882 GGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTAGTTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTA-TTCC
*
36145922 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACT-ATTCC
* * *
36145962 GGGCTAAGTTCCGAACGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTAT-TCC
* *
36146002 GGGCTAAGTCCCGAAGGCATTTGTACGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-AAGTACTAT-TCC
* * *
36146042 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTACATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGC-AAGTACTA-TTCC
* *
36146082 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-CTAT-TCC
* *
36146122 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
36146138 TACTTGGTTT
Statistics
Matches: 190, Mismatches: 19, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
39 19 0.10
40 168 0.88
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (38 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATTCC
Found at i:36146096 original size:120 final size:120
Alignment explanation
Indices: 36145882--36146137 Score: 317
Period size: 120 Copynumber: 2.1 Consensus size: 120
36145872 GATGATAACG
* * * *
36145882 GGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTACAACTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTG
* * * *
36145947 CTAGTGACTAATTCCGGGCTAAGTTCCGAACGCATTTGTGCGAGTTA-CTATATCC
66 CAACTGACTAATTCCGGGCTAAGTCCCGAACGCATTTGAGCGAG-TAGCTATATCC
36146002 GGGCTAAGTCCCGAAGGCATTTGTACGAACT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTAC-AACTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTTG
* *
36146065 TGCGAACT-ACTACA-TCTGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCC
64 TGC-AACTGACTA-ATTCCGGGCTAAGTCCCGAACGCATTTGAGCGAGTAGCTATATCC
* *
36146122 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
36146138 TACTTGGTTT
Statistics
Matches: 119, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
119 17 0.14
120 97 0.82
121 5 0.04
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (120 bp):
GGGCTAAGTCCCGAAGGCATTTGTACAACTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTG
CAACTGACTAATTCCGGGCTAAGTCCCGAACGCATTTGAGCGAGTAGCTATATCC
Found at i:36156572 original size:79 final size:82
Alignment explanation
Indices: 36156461--36156645 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
36156451 GCTACTCGTT
* * *
36156461 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
36156524 GGATTTAGTAAC-TCGCG
65 GGATATAGTAACTTAGCA
* **
36156541 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
36156604 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
36156621 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36156646 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:36156645 original size:40 final size:40
Alignment explanation
Indices: 36156442--36156645 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
36156432 CGGAATTTAA
** *
36156442 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36156482 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36156522 CCGGATTTAGTAACTCGCGCAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36156561 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36156601 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36156641 CCGGA
1 CCGGA
36156646 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36158420 original size:14 final size:14
Alignment explanation
Indices: 36158401--36158435 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
36158391 CGGATCAGGT
36158401 AAATTTCGAGGACG
1 AAATTTCGAGGACG
*
36158415 AAATTTCGAGGATG
1 AAATTTCGAGGACG
36158429 AAATTTC
1 AAATTTC
36158436 TTTAAGGAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (14 bp):
AAATTTCGAGGACG
Found at i:36159067 original size:12 final size:13
Alignment explanation
Indices: 36159039--36159071 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
36159029 TTATTTCTTT
36159039 TTCTCCATCTACC
1 TTCTCCATCTACC
*
36159052 TTCTCC-TCTTCC
1 TTCTCCATCTACC
36159064 TTCTCCAT
1 TTCTCCAT
36159072 AGCCAAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:36160170 original size:28 final size:28
Alignment explanation
Indices: 36160138--36160202 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
36160128 ATTTACTAGA
*
36160138 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
36160166 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
36160194 ATACCCCTA
1 ATACCCCTA
36160203 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:36160366 original size:27 final size:28
Alignment explanation
Indices: 36160308--36160397 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
36160298 AGGAAGCGTC
*
36160308 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
36160336 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
36160363 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
36160392 CTGGTG
1 CTGGTG
36160398 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:36160408 original size:29 final size:28
Alignment explanation
Indices: 36160318--36160408 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
36160308 CTGGTGGCTA
* * *
36160318 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
36160346 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
36160373 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
36160402 TGTCACA
1 TGCCACA
36160409 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:36160416 original size:55 final size:56
Alignment explanation
Indices: 36160308--36160422 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
36160298 AGGAAGCGTC
* * *
36160308 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
36160363 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
36160419 CTGG
1 CTGG
36160423 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:36170528 original size:28 final size:28
Alignment explanation
Indices: 36170484--36170539 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
36170474 TGGCCATACG
36170484 ACCGTGTGAACCTTGCAATGTAAATTTT
1 ACCGTGTGAACCTTGCAATGTAAATTTT
*
36170512 ACCGTGTGAA-CTCTGCAATGTGAATTTT
1 ACCGTGTGAACCT-TGCAATGTAAATTTT
36170540 TCTATCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 2 0.08
28 24 0.92
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (28 bp):
ACCGTGTGAACCTTGCAATGTAAATTTT
Found at i:36173983 original size:27 final size:26
Alignment explanation
Indices: 36173937--36173996 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
36173927 ACGAGGCTGC
36173937 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGTCACCAGA-A
* * *
36173964 CAGATATTGTGGCTAGGTCACCAGAA
1 CAGATATTGTGACAAAGTCACCAGAA
36173990 CAGATAT
1 CAGATAT
36173997 ATATATGTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAAAGTCACCAGAA
Found at i:36177624 original size:33 final size:32
Alignment explanation
Indices: 36177575--36177638 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
36177565 CTCGCTGCAA
* *
36177575 TCTGCTGGCTTCGCCACATATATATATATCTAT
1 TCTGCTGGCCTAGCCACA-ATATATATATCTAT
* *
36177608 TCTGCTGGCCTAGCCACAATATCTGTATCTA
1 TCTGCTGGCCTAGCCACAATATATATATCTA
36177639 GTGACTTCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (32 bp):
TCTGCTGGCCTAGCCACAATATATATATCTAT
Found at i:36183004 original size:6 final size:6
Alignment explanation
Indices: 36182986--36183094 Score: 89
Period size: 6 Copynumber: 17.8 Consensus size: 6
36182976 AAGAAACATT
* *
36182986 ATCAGA A-CTAGA ATCAGA ATCAAA ATCAGA ATCAGA ATCAGA ATTAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
36183033 GTGACAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATTAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
*
36183084 ATCAGT ATCAG
1 ATCAGA ATCAG
36183095 GTAACAGAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
5 4 0.05
6 70 0.85
7 6 0.07
8 2 0.02
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:36183047 original size:31 final size:31
Alignment explanation
Indices: 36183009--36183104 Score: 147
Period size: 31 Copynumber: 3.1 Consensus size: 31
36182999 TCAGAATCAA
* * *
36183009 AATCAGAATCAGAATCAGAATTAGGTGACAG
1 AATCAGAATCAGAATCAGTATCAGGTAACAG
36183040 AATCAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGTATCAGGTAACAG
* *
36183071 AATCAAAATTAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGTATCAGGTAACAG
36183102 AAT
1 AAT
36183105 AAAAAATCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.21
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGTATCAGGTAACAG
Found at i:36183071 original size:25 final size:26
Alignment explanation
Indices: 36183043--36183113 Score: 72
Period size: 31 Copynumber: 2.6 Consensus size: 26
36183033 GTGACAGAAT
36183043 CAGAATC-AGAATCAGTATCAGGTAA
1 CAGAATCAAGAATCAGTATCAGGTAA
36183068 CAGAATCAAAATTAGAATCAGTATCAGGTAA
1 CAGAATC---A--AGAATCAGTATCAGGTAA
* *
36183099 CAGAATAAAAAATCA
1 CAGAATCAAGAATCA
36183114 AAATGTGAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
25 7 0.18
26 6 0.16
28 1 0.03
31 24 0.63
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.20
Consensus pattern (26 bp):
CAGAATCAAGAATCAGTATCAGGTAA
Found at i:36183302 original size:27 final size:26
Alignment explanation
Indices: 36183257--36183354 Score: 115
Period size: 27 Copynumber: 3.7 Consensus size: 26
36183247 CAGTTATCAA
* * *
36183257 ATATTGTGACAGAGTCACCAGATACAG
1 ATATTGTGGCAAAGCCACCAGA-ACAG
*
36183284 ATATTGTGGCAAAGCCACCAGAACAA
1 ATATTGTGGCAAAGCCACCAGAACAG
*
36183310 ATATTTGTGGCATAGCCACCAGAATCAG
1 ATA-TTGTGGCAAAGCCACCAGAA-CAG
*
36183338 ATAATGTGGCAAAGCCA
1 ATATTGTGGCAAAGCCA
36183355 TTTAACAGAA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 50 0.82
28 5 0.08
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.20
Consensus pattern (26 bp):
ATATTGTGGCAAAGCCACCAGAACAG
Found at i:36183561 original size:22 final size:22
Alignment explanation
Indices: 36183513--36183571 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
36183503 GTAAATACGT
*
36183513 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
36183535 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
36183557 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
36183572 CGATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:36183929 original size:27 final size:27
Alignment explanation
Indices: 36183899--36184260 Score: 438
Period size: 27 Copynumber: 13.4 Consensus size: 27
36183889 GGGGCAAAAT
* * *
36183899 GGTAATTTTACCTTA-AGAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
* **
36183926 GGTAATTCTACCTTACAGGGGTAAATC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
36183953 AGTATTTCTAACCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
36183980 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
36184007 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
36184034 GGTAATTTTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36184061 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
36184088 AGTAATTCTACCTTATAGGGGTTTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36184115 AGTAATTATACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36184142 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36184169 AGTAATTATACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36184196 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36184223 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36184250 AGTAATTCTAC
1 GGTAATTCTAC
36184261 AAACCAAGGG
Statistics
Matches: 288, Mismatches: 46, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
27 286 0.99
28 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:36184311 original size:27 final size:27
Alignment explanation
Indices: 36184241--36184317 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
36184231 TACCCTACAG
* *
36184241 GGGTATTTTAGTAATTCTACAAACCAA
1 GGGTATTTTAGTAATTTTATAAACCAA
* *
36184268 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTATAAACCAA
*
36184295 GGGTATTTTAGTAATTTTTTAAA
1 GGGTATTTTAGTAATTTTATAAA
36184318 TCGAGAGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTATAAACCAA
Found at i:36184336 original size:27 final size:27
Alignment explanation
Indices: 36184314--36184434 Score: 170
Period size: 27 Copynumber: 4.5 Consensus size: 27
36184304 AGTAATTTTT
* *
36184314 TAAATCGAGAGTAAAACAATAATTCTG
1 TAAATCGAGGGTAAAACGATAATTCTG
* *
36184341 TAAATCGAGGGTAAAACGGTAGTTCTG
1 TAAATCGAGGGTAAAACGATAATTCTG
* * *
36184368 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGATAATTCTG
*
36184395 TAAATTGAGGGTAAAACGATAATTCTG
1 TAAATCGAGGGTAAAACGATAATTCTG
36184422 TAAATCGAGGGTA
1 TAAATCGAGGGTA
36184435 CTTTGGTAAT
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGATAATTCTG
Found at i:36184352 original size:81 final size:81
Alignment explanation
Indices: 36184267--36184447 Score: 200
Period size: 81 Copynumber: 2.2 Consensus size: 81
36184257 CTACAAACCA
* *** * *
36184267 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTTTAAATCGAGAGTAAAACA
1 AGGGTAATTTGGTAATTTTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGAGTAAAACA
36184332 ATAATTCTGTAAATCG
66 ATAATTCTGTAAATCG
*** * * * * * * * *
36184348 AGGGTAAAACGGTAGTTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACG
1 AGGGTAATTTGGTAATTTTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGAGTAAAACA
36184413 ATAATTCTGTAAATCG
66 ATAATTCTGTAAATCG
*
36184429 AGGGTACTTTGGTAATTTT
1 AGGGTAATTTGGTAATTTT
36184448 ACAAATTGAG
Statistics
Matches: 77, Mismatches: 23, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (81 bp):
AGGGTAATTTGGTAATTTTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGAGTAAAACA
ATAATTCTGTAAATCG
Found at i:36184431 original size:54 final size:54
Alignment explanation
Indices: 36184314--36184458 Score: 173
Period size: 54 Copynumber: 2.7 Consensus size: 54
36184304 AGTAATTTTT
* *** * * * *
36184314 TAAATCGAGAGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGGTAGTTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTCTG
36184368 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTCTG
*** * *
36184422 TAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGG
36184459 ACATTTTAGT
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 78 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (54 bp):
TAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTCTG
Found at i:36188050 original size:27 final size:26
Alignment explanation
Indices: 36188012--36188071 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
36188002 ACATATATAT
* *
36188012 ATATATGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
36188038 ATATCTGTATCTGGTGACTTCGGCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
36188065 ATATCTG
1 ATATCTG
36188072 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:36189110 original size:15 final size:15
Alignment explanation
Indices: 36189068--36189110 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
36189058 TGTGTTGTTG
*
36189068 GATTAAATTGAATGA
1 GATTAATTTGAATGA
**
36189083 GATTGTGTTTGAATGA
1 GATT-AATTTGAATGA
36189099 GATTAATTTGAA
1 GATTAATTTGAA
36189111 ATTGTATAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (15 bp):
GATTAATTTGAATGA
Found at i:36194455 original size:19 final size:18
Alignment explanation
Indices: 36194418--36194452 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36194408 AACTAAATTG
36194418 ATAACATATAAAAATTTC
1 ATAACATATAAAAATTTC
*
36194436 ATAACTTATAAAAATTT
1 ATAACATATAAAAATTT
36194453 TCAACTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAACATATAAAAATTTC
Found at i:36194458 original size:17 final size:17
Alignment explanation
Indices: 36194424--36194465 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
36194414 ATTGATAACA
36194424 TATAAAAATTTCATAACT
1 TATAAAAATTTCA-AACT
36194442 TATAAAAATTTTC-AACT
1 TATAAAAA-TTTCAAACT
*
36194459 TTTAAAA
1 TATAAAA
36194466 GGTCACACGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 10 0.45
18 8 0.36
19 4 0.18
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (17 bp):
TATAAAAATTTCAAACT
Found at i:36197196 original size:43 final size:43
Alignment explanation
Indices: 36197143--36197260 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
36197133 CTAGTGGCAG
*
36197143 TTTATCTGCAAATATGATGTACACCCACAGCCTAATGGCAATT
1 TTTATCTGCAAATATGATGTGCACCCACAGCCTAATGGCAATT
* * * * * * * *
36197186 TTTATCTGCAAGTATGTTATGCACCCATAACCTAGTGGTAGTT
1 TTTATCTGCAAATATGATGTGCACCCACAGCCTAATGGCAATT
* *
36197229 TTTATCTGTAAATAT-ACTGTGCATCCACAGCC
1 TTTATCTGCAAATATGA-TGTGCACCCACAGCC
36197261 CAGTGGCAGT
Statistics
Matches: 58, Mismatches: 16, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (43 bp):
TTTATCTGCAAATATGATGTGCACCCACAGCCTAATGGCAATT
Found at i:36198353 original size:21 final size:19
Alignment explanation
Indices: 36198310--36198353 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
36198300 CCTTACATGT
36198310 ACACACGATTCCACTAATC
1 ACACACGATTCCACTAATC
*
36198329 ACACACGGTTCCACTAATC
1 ACACACGATTCCACTAATC
*
36198348 AGACAC
1 ACACAC
36198354 CATTAATGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.36, C:0.36, G:0.09, T:0.18
Consensus pattern (19 bp):
ACACACGATTCCACTAATC
Found at i:36206144 original size:15 final size:16
Alignment explanation
Indices: 36206124--36206161 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
36206114 AAATTCCACT
36206124 AGAAAATAAGCAA-AA
1 AGAAAATAAGCAATAA
*
36206139 AGAAAA-CAGCAATAA
1 AGAAAATAAGCAATAA
36206154 AGAAAATA
1 AGAAAATA
36206162 TTAACTCAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.71, C:0.08, G:0.13, T:0.08
Consensus pattern (16 bp):
AGAAAATAAGCAATAA
Found at i:36209817 original size:14 final size:14
Alignment explanation
Indices: 36209798--36209828 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
36209788 TTTAGGACAT
*
36209798 GCCCGTATGGGTAG
1 GCCCGTATGGGCAG
36209812 GCCCGTATGGGCAG
1 GCCCGTATGGGCAG
36209826 GCC
1 GCC
36209829 GTGTAGTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.29, G:0.42, T:0.16
Consensus pattern (14 bp):
GCCCGTATGGGCAG
Found at i:36219967 original size:22 final size:22
Alignment explanation
Indices: 36219940--36219993 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
36219930 CCACTGTCGG
36219940 CCATCATCTCAACACCAAAC-CA
1 CCATCATCTCAACACC-AACTCA
* *
36219962 CCATCAT-TGCACCACCATCTCA
1 CCATCATCT-CAACACCAACTCA
36219984 CCATCATCTC
1 CCATCATCTC
36219994 CTCCATCTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
21 3 0.11
22 23 0.85
23 1 0.04
ACGTcount: A:0.31, C:0.46, G:0.02, T:0.20
Consensus pattern (22 bp):
CCATCATCTCAACACCAACTCA
Found at i:36223393 original size:244 final size:244
Alignment explanation
Indices: 36222957--36223446 Score: 890
Period size: 244 Copynumber: 2.0 Consensus size: 244
36222947 TCAAGGTAAA
36222957 TAGGACTAAGACCATAGTTGAAAGACGATATGGCTTCCTAGTAGTCCACCGTAATGGTAAACACA
1 TAGGACTAAGACCATAGTTGAAAGACGATATGGCTTCCTAGTAGTCCACCGTAATGGTAAACACA
*
36223022 GGAAATATAAGGTGTAAAACCATAGTTGGACCATGGTAACTAAAGTAGTCTGACAGGATGTTAAA
66 GGAAATATAAGGTGTAAAACCATAGTTGGACCATGGCAACTAAAGTAGTCTGACAGGATGTTAAA
*
36223087 AATAGATAGCCTATCAAGATGATAAAAATATGCAGTTCGACGGGACATTAAAGACGGGGTCATCT
131 AATAGATAGCCTATCAAGATGATAAAAATATGCAATTCGACGGGACATTAAAGACGGGGTCATCT
36223152 GCCAGGATGTTAAACATAGAGACTAGGGTGTATCAAGTCAAAGTTTGGC
196 GCCAGGATGTTAAACATAGAGACTAGGGTGTATCAAGTCAAAGTTTGGC
* * *
36223201 TAGGATTAAGACCATAGTTGAAAGACGATATGGCTTCCTAGTAGTCCACCGTGATGGTAAACACG
1 TAGGACTAAGACCATAGTTGAAAGACGATATGGCTTCCTAGTAGTCCACCGTAATGGTAAACACA
*
36223266 GGAAATATAAGGTGTAAAACCATAGTTGGACTATGGCAACTAAAGTAGTCTGACAGGATGTTAAA
66 GGAAATATAAGGTGTAAAACCATAGTTGGACCATGGCAACTAAAGTAGTCTGACAGGATGTTAAA
* *
36223331 CATAGATAGCCTATCAAGATGATAAAAATATGCAATTCGACGGGACATTAAAGACTGGGTCATCT
131 AATAGATAGCCTATCAAGATGATAAAAATATGCAATTCGACGGGACATTAAAGACGGGGTCATCT
* *
36223396 GCCAGGATGTTAAACATGGAGACTAGGGTGTATCAAGTTAAAGTTTGGC
196 GCCAGGATGTTAAACATAGAGACTAGGGTGTATCAAGTCAAAGTTTGGC
36223445 TA
1 TA
36223447 TGGAAATGAG
Statistics
Matches: 236, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
244 236 1.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.24
Consensus pattern (244 bp):
TAGGACTAAGACCATAGTTGAAAGACGATATGGCTTCCTAGTAGTCCACCGTAATGGTAAACACA
GGAAATATAAGGTGTAAAACCATAGTTGGACCATGGCAACTAAAGTAGTCTGACAGGATGTTAAA
AATAGATAGCCTATCAAGATGATAAAAATATGCAATTCGACGGGACATTAAAGACGGGGTCATCT
GCCAGGATGTTAAACATAGAGACTAGGGTGTATCAAGTCAAAGTTTGGC
Found at i:36225516 original size:36 final size:36
Alignment explanation
Indices: 36225469--36225539 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
36225459 TTTTGACCCA
*
36225469 GTACTCTGTAATGTAATCCAACCCGATTCAGTTTTT
1 GTACTCTGTAATGTAATCCAACCCGATTCAATTTTT
36225505 GTACTCTGTAATGTAATCCAACCCGATTCAATTTT
1 GTACTCTGTAATGTAATCCAACCCGATTCAATTTT
36225540 CTATTTTCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.38
Consensus pattern (36 bp):
GTACTCTGTAATGTAATCCAACCCGATTCAATTTTT
Found at i:36225632 original size:26 final size:26
Alignment explanation
Indices: 36225602--36225664 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
36225592 CAATTTTTCT
*
36225602 ATAGTAAAATTTAGATGATTTTACCC
1 ATAGTAAAATTTAGACGATTTTACCC
36225628 ATAGTAAAATTTAGACGATTTTACCC
1 ATAGTAAAATTTAGACGATTTTACCC
*
36225654 -TTGTAAAATTT
1 ATAGTAAAATTT
36225665 TGAGAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
25 10 0.29
26 25 0.71
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (26 bp):
ATAGTAAAATTTAGACGATTTTACCC
Found at i:36232701 original size:15 final size:16
Alignment explanation
Indices: 36232681--36232710 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36232671 TGGTGCCTTG
36232681 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
36232696 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
36232711 AGTATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:36242729 original size:20 final size:19
Alignment explanation
Indices: 36242693--36242742 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
36242683 AAGGGTTATT
36242693 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTAAAATAA
*
36242712 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTAAAATAA
*
36242732 TTGAAAATGTG
1 TTGTAAATGTG
36242743 AGTTGCTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 10 0.37
20 16 0.59
21 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (19 bp):
TTGTAAATGTGTAAAATAA
Found at i:36243391 original size:49 final size:49
Alignment explanation
Indices: 36243326--36243507 Score: 172
Period size: 49 Copynumber: 3.7 Consensus size: 49
36243316 TGTTGTGTGT
* *
36243326 CAGTGTAAGACTTGTCTGGGACATGGCATCGACATCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
** * * *
36243375 CAGTGTAAGACCTGTCTCAGACATGGCATC-AGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-CATCGATAGATGAAAGC
* * * * **
36243424 CAATGTAAGACCTGTCTAGGACATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
* * * *
36243471 CAGAGTAAAACTATGTCTGGGACATGGCATCGGCATC
1 CAGTGTAAGAC-CTGTCTGGGACATGGCATCGACATC
36243508 TTATCTTATG
Statistics
Matches: 106, Mismatches: 24, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
47 12 0.11
48 21 0.20
49 72 0.68
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAAAGC
Found at i:36248664 original size:67 final size:65
Alignment explanation
Indices: 36248593--36248803 Score: 153
Period size: 67 Copynumber: 3.1 Consensus size: 65
36248583 TGATTCATAA
36248593 AAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAAAGTTATATTAATTAATTTCAG
1 AAAATATTAATTGTATATATTTTA--AAATTTATTAATATAAAAAGTTATATTAATTAATTTCAG
36248658 TC
64 TC
* * * * * * * *
36248660 AAAATATAAAATATATGGTA-ATTAATATTCT-TCTGAA-AAAAATATAATTAATATATGAATTT
1 AAAATATTAATTGTAT-ATATTTTAAAATT-TAT-T-AATATAAA-A-AGTT-ATAT-T-AA-TT
*
36248722 GA-TTCA-TAC
56 AATTTCAGT-C
* *
36248731 AAAATATTAATTGTATATATTTTATTGAATTTATTAATATAAATAGTTATATTAATTAATTTCAG
1 AAAATATTAATTGTATATATTTTA--AAATTTATTAATATAAAAAGTTATATTAATTAATTTCAG
36248796 TC
64 TC
36248798 AAAATA
1 AAAATA
36248804 ATAAAACACA
Statistics
Matches: 106, Mismatches: 20, Indels: 36
0.65 0.12 0.22
Matches are distributed among these distances:
65 5 0.05
66 9 0.08
67 32 0.30
68 7 0.07
69 8 0.08
70 7 0.07
71 25 0.24
72 9 0.08
73 4 0.04
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.43
Consensus pattern (65 bp):
AAAATATTAATTGTATATATTTTAAAATTTATTAATATAAAAAGTTATATTAATTAATTTCAGTC
Found at i:36248792 original size:71 final size:71
Alignment explanation
Indices: 36248579--36248792 Score: 173
Period size: 71 Copynumber: 3.1 Consensus size: 71
36248569 TTAATATATG
** *
36248579 AATTTGATTCATAAAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAAAAGTTATA
1 AATTTGATTCATAAAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAATAGTTATA
36248644 TTAATT
66 TTAATT
* * **
36248650 AATTTCAGTCAAAATATAAAATATATGGTAA-T-TA-ATATTCTT-CTGAA---AAAAATAT-AA
1 AATTTGATTC---ATA-AAAA-ATAT--TAATTGTATATATT-TTACTGAATTTATTAATATAAA
* *
36248707 T--TAATA-T-ATG
58 TAGTTATATTAATT
* *
36248717 AATTTGATTCATACAAAATATTAATTGTATATATTTTATTGAATTTATTAATATAAATAGTTATA
1 AATTTGATTCATAAAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAATAGTTATA
36248782 TTAATT
66 TTAATT
36248788 AATTT
1 AATTT
36248793 CAGTCAAAAT
Statistics
Matches: 106, Mismatches: 17, Indels: 40
0.65 0.10 0.25
Matches are distributed among these distances:
60 3 0.03
61 1 0.01
62 8 0.08
63 12 0.11
64 3 0.03
66 6 0.06
67 13 0.12
68 1 0.01
69 8 0.08
70 1 0.01
71 17 0.16
72 6 0.06
74 3 0.03
75 12 0.11
76 8 0.08
77 1 0.01
78 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (71 bp):
AATTTGATTCATAAAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAATAGTTATA
TTAATT
Found at i:36248901 original size:139 final size:138
Alignment explanation
Indices: 36248566--36249122 Score: 789
Period size: 138 Copynumber: 4.0 Consensus size: 138
36248556 GAACATAAAT
* *
36248566 TAATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACCAAATTTATTAAT
1 TAATTAATATATGAATTTGAATCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAAT
* * * * *
36248631 ATAAAAAGTTATATTAATTAATTTCAGTCAAAATATAAAATATATGGTAATTAATATTCTTCTGA
66 ATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGA
*
36248696 AAAAAATA
131 AAAGAATA
* ***
36248704 TAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATTGAATTTATTAAT
1 TAATTAATATATGAATTTGAATCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAAT
* *
36248769 ATAAATAGTTATATTAATTAATTTCAGTCAAAATAATAAAACACATGGAAATTAATATTTTTTTG
66 ATAAATAGTTATATTAATTAATTTCAGTCAAAAT-ATAAAAGACATGGAAATTAATATTCTTTTG
36248834 AAAAGAATA
130 AAAAGAATA
* * *
36248843 TAATTAATATATGAATTTGAATAATACAAAATATTAATTGTATGTATTGTACCAAATTTATTAAT
1 TAATTAATATATGAATTTGAATCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAAT
*
36248908 ATAAATAGTTATATTAATTAATTT-AGGTCAAAATATAAAAGACATAGAAATTAATATTCTTTTA
66 ATAAATAGTTATATTAATTAATTTCA-GTCAAAATATAAAAGACATGGAAATTAATATTCTTTT-
36248972 GAAAA-AATA
129 GAAAAGAATA
* * * *
36248981 TAATTAATATATGAATTT-AATTTATACAAAATATTAATTATCTATATTTTATCAAATTTATTAA
1 TAATTAATATATGAATTTGAA-TCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAA
* * * * * *
36249045 TATAAA-AGTTCTATTAATCAATTACGGTCAAAGTATAAAAGACATGTAAATTAATATTCTTTTG
65 TATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTG
*
36249109 GAAAGAATA
130 AAAAGAATA
36249118 TAATT
1 TAATT
36249123 CCTTTTTCTA
Statistics
Matches: 378, Mismatches: 35, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
136 4 0.01
137 60 0.16
138 186 0.49
139 128 0.34
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.41
Consensus pattern (138 bp):
TAATTAATATATGAATTTGAATCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAAT
ATAAATAGTTATATTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATTCTTTTGA
AAAGAATA
Found at i:36253177 original size:43 final size:43
Alignment explanation
Indices: 36253111--36253267 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
36253101 AGCTCATACA
*
36253111 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
* *
36253154 ATGCCACTATCCCAGACAG-GGTCTTACACGAAATCAAATA-CG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACACGTAATCAAATATCG
* * *
36253196 ATGCTGA-TGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGC-CACTGTCCCAGACGTGGTCTTACACGT-AATCA-AATATCG
36253240 ATGCCAAC-GTCCCAGACGTGGTCTTACA
1 ATGCC-ACTGTCCCAGACGTGGTCTTACA
36253268 TGAGAACACA
Statistics
Matches: 95, Mismatches: 10, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
42 28 0.29
43 38 0.40
44 29 0.31
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:36260810 original size:43 final size:42
Alignment explanation
Indices: 36260699--36260846 Score: 140
Period size: 43 Copynumber: 3.5 Consensus size: 42
36260689 AATGGCAACA
* *
36260699 TCCCAGACATGGTCTTACATGT-AATCAAATATCGATGTCATTA
1 TCCCAGACATGGTCTTACACGTAAATCAAATA-CGATGTCA-TG
** *
36260742 TCCGTGACAGGGTCTTACACG-AAATCAAATACGATGTCGATG
1 TCCCAGACATGGTCTTACACGTAAATCAAATACGATGTC-ATG
* *
36260784 TCCCAGACATGGTCTTATACGTAAATCATAAGT-CGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAAATCA-AA-TACGATGTC-ATG
**
36260828 TCCCAGATGTGGTCTTACA
1 TCCCAGACATGGTCTTACA
36260847 TGAGAACACA
Statistics
Matches: 86, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 25 0.29
43 33 0.38
44 27 0.31
45 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAAATCAAATACGATGTCATG
Found at i:36260829 original size:44 final size:42
Alignment explanation
Indices: 36260699--36260846 Score: 138
Period size: 42 Copynumber: 3.5 Consensus size: 42
36260689 AATGGCAACA
* * *
36260699 TCCCAGACATGGTCTTACATGT-AATCAAATATCGATGTCATTA
1 TCCCAGACATGGTCTTACACGTAAATC-AA-ATCGATGTCAATG
** * *
36260742 TCCGTGACAGGGTCTTACACG-AAATCAAATACGATGTCGATG
1 TCCCAGACATGGTCTTACACGTAAATCAAAT-CGATGTCAATG
* *
36260784 TCCCAGACATGGTCTTATACGTAAATCATAAGTCGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAAATCA-AA-TCGATGTCAATG
**
36260828 TCCCAGATGTGGTCTTACA
1 TCCCAGACATGGTCTTACA
36260847 TGAGAACACA
Statistics
Matches: 84, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 2 0.02
42 27 0.32
43 27 0.32
44 27 0.32
45 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAAATCAAATCGATGTCAATG
Found at i:36264187 original size:30 final size:30
Alignment explanation
Indices: 36264151--36264220 Score: 106
Period size: 30 Copynumber: 2.3 Consensus size: 30
36264141 CATTGACCAG
* *
36264151 TGAAAAGGGATAGCTTCGGCTATCGAA-TCA
1 TGAAAAGGGATAGCTCCGGCTATCAAACT-A
36264181 TGAAAAGGGATAGCTCCGGCTATCAAACTA
1 TGAAAAGGGATAGCTCCGGCTATCAAACTA
36264211 TGAAAAGGGA
1 TGAAAAGGGA
36264221 CGGTGACGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 36 0.97
31 1 0.03
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.20
Consensus pattern (30 bp):
TGAAAAGGGATAGCTCCGGCTATCAAACTA
Found at i:36264236 original size:30 final size:30
Alignment explanation
Indices: 36264202--36264400 Score: 131
Period size: 29 Copynumber: 6.7 Consensus size: 30
36264192 AGCTCCGGCT
*
36264202 ATCAAACTATGAAAAGGGACGGTGACGACC
1 ATCAAACTATGAAAAGGGATGGTGACGACC
* * *
36264232 ATC-AACAATGAAAATGGATGGTGATGACC
1 ATCAAACTATGAAAAGGGATGGTGACGACC
* * * * * *
36264261 ATCAAAATTATGAAATGGGATAGCT-TCGGCT
1 ATC-AAACTATGAAAAGGGAT-GGTGACGACC
** * * * *
36264292 ATTGAACCATGAAAAGGGGTAGCT--CTGACT
1 ATCAAACTATGAAAAGGGAT-GGTGAC-GACC
*
36264322 ATCAAACTATG-AAAGGGATGGTGACAACC
1 ATCAAACTATGAAAAGGGATGGTGACGACC
* *
36264351 ATC-AACAATGAAAAAGGATGGTGACGACC
1 ATCAAACTATGAAAAGGGATGGTGACGACC
*
36264380 ATCAAAATTATGAAAAGGGAT
1 ATC-AAACTATGAAAAGGGAT
36264401 AGCTTCAACT
Statistics
Matches: 127, Mismatches: 33, Indels: 17
0.72 0.19 0.10
Matches are distributed among these distances:
28 8 0.06
29 57 0.45
30 31 0.24
31 29 0.23
32 2 0.02
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (30 bp):
ATCAAACTATGAAAAGGGATGGTGACGACC
Found at i:36264391 original size:119 final size:119
Alignment explanation
Indices: 36264151--36264461 Score: 460
Period size: 119 Copynumber: 2.6 Consensus size: 119
36264141 CATTGACCAG
* * *
36264151 TGAAAAGGGATAGCTTCGGCTATCGAATCATGAAAAGGGATAGCTCCGGCTATCAAACTATGAAA
1 TGAAAAGGGATAGCTTCGGCTATTGAATCATGAAAAGGGATAGCTCTGACTATCAAACTATG-AA
* * * *
36264216 AGGGACGGTGACGACCATCAACAATGAAAATGGATGGTGATGACCATCAAAATTA
65 AGGGATGGTGACAACCATCAACAATGAAAAAGGATGGTGACGACCATCAAAATTA
* * *
36264271 TGAAATGGGATAGCTTCGGCTATTGAACCATGAAAAGGGGTAGCTCTGACTATCAAACTATGAAA
1 TGAAAAGGGATAGCTTCGGCTATTGAATCATGAAAAGGGATAGCTCTGACTATCAAACTATGAAA
36264336 GGGATGGTGACAACCATCAACAATGAAAAAGGATGGTGACGACCATCAAAATTA
66 GGGATGGTGACAACCATCAACAATGAAAAAGGATGGTGACGACCATCAAAATTA
** * * * *
36264390 TGAAAAGGGATAGCTTCAACTATTGAATCATGAAAATGGATAGCTTTGACTATCGAATTATGGAA
1 TGAAAAGGGATAGCTTCGGCTATTGAATCATGAAAAGGGATAGCTCTGACTATCAAACTAT-GAA
36264455 AGGGATG
65 AGGGATG
36264462 TGTCAGCCAT
Statistics
Matches: 171, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
119 105 0.61
120 66 0.39
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (119 bp):
TGAAAAGGGATAGCTTCGGCTATTGAATCATGAAAAGGGATAGCTCTGACTATCAAACTATGAAA
GGGATGGTGACAACCATCAACAATGAAAAAGGATGGTGACGACCATCAAAATTA
Found at i:36264423 original size:30 final size:30
Alignment explanation
Indices: 36264389--36264460 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
36264379 CATCAAAATT
*
36264389 ATGAAAAGGGATAGCTTCAACTATTGAATC
1 ATGAAAAGGGATAGCTTCAACTATCGAATC
* ** *
36264419 ATGAAAATGGATAGCTTTGACTATCGAATT
1 ATGAAAAGGGATAGCTTCAACTATCGAATC
*
36264449 ATGGAAAGGGAT
1 ATGAAAAGGGAT
36264461 GTGTCAGCCA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.28
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCAACTATCGAATC
Found at i:36267044 original size:51 final size:50
Alignment explanation
Indices: 36266910--36267044 Score: 162
Period size: 50 Copynumber: 2.7 Consensus size: 50
36266900 GAAGCTATCT
* *
36266910 GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTCACCATCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCACACCATCG
** * * * * ***
36266960 AATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCACA-CCATCG
36267011 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
36267045 TGCGACCTCA
Statistics
Matches: 69, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
50 37 0.54
51 32 0.46
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (50 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCACACCATCG
Found at i:36273401 original size:139 final size:137
Alignment explanation
Indices: 36273143--36273558 Score: 599
Period size: 138 Copynumber: 3.0 Consensus size: 137
36273133 GAGAACATAG
36273143 ATAT-ATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* ** *
36273207 AATATAAACAATTATATTAATTAATTTCT-AACAAAATATAAAAGACATGGTAATTAATATTCTT
66 AATATAAATAATTATATTAATTAATTT-TGGTCAAAATATAAAAGACAT-GAAATTAATATTCTT
*
36273271 TTGGAAATA
129 TTGGAAAGA
36273280 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTTACCGAATTTAT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATA-TTTTACCGAATTTAT
* *
36273345 TAATATAAATATTTATATTAATTAATTTTGGTCAAAATATAAAAAACATGAAAATTAATATT-TT
65 TAATATAAATAATTATATTAATTAATTTTGGTCAAAATATAAAAGACATG-AAATTAATATTCTT
*
36273409 TTTGAAAGA
129 TTGGAAAGA
* * * * * *
36273418 ATATAATTAATATATGAATTTTACTCATACAAAATATTACTTGTATGTACTGTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * *
36273483 AATATAAATAGTTATATTAATAAATTTTGGTCAAAAGATAAAAGACAT-AAATTAATATTCTTTT
66 AATATAAATAATTATATTAATTAATTTTGGTCAAAATATAAAAGACATGAAATTAATATTCTTTT
*
36273547 -GCAAGA
131 GGAAAGA
36273553 ATATAA
1 ATATAA
36273559 CTCACTTTTC
Statistics
Matches: 255, Mismatches: 19, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
135 22 0.09
136 4 0.02
137 62 0.24
138 100 0.39
139 67 0.26
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.41
Consensus pattern (137 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
AATATAAATAATTATATTAATTAATTTTGGTCAAAATATAAAAGACATGAAATTAATATTCTTTT
GGAAAGA
Found at i:36282706 original size:40 final size:40
Alignment explanation
Indices: 36282651--36282846 Score: 243
Period size: 40 Copynumber: 4.9 Consensus size: 40
36282641 GGATATAGCT
* * * * *
36282651 ACTCGCTCGAATGCCTTTGGGACATAGCCCGGTTATGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
36282691 ACTCGCACAAATGCCTTCGGGGCTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
36282731 ACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
36282771 ACTCGCACAAATGCCTTCGGGGA-TTTGCCCGG-AATTAGTC
1 ACTCGCACAAATGCCTTC-GGGACTTAGCCCGGTTA-TAGTA
*
36282811 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
36282847 CATCCGAATA
Statistics
Matches: 133, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 5 0.04
40 123 0.92
41 5 0.04
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:36282772 original size:80 final size:79
Alignment explanation
Indices: 36282639--36282846 Score: 301
Period size: 80 Copynumber: 2.6 Consensus size: 79
36282629 CGGAATTTAA
* * *
36282639 CCGGATATAGCTACTCGCTCGAATGCCTTTGGGACATAGCCCGGTTATGGTAACTCGCACAAATG
1 CCGGATATAG-TACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
*
36282704 CCTTCGGGGCTTAGC
65 CCTTCGGGGATTAGC
36282719 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
1 CCGGATATAGT-ACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
*
36282784 CCTTCGGGGATTTGC
65 CCTTCGGGGATTAGC
* * *
36282799 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCGGATA-TAGT-ACTCGCACGAATGCCTTCGGGACATAGCCCGGTTAT
36282847 CATCCGAATA
Statistics
Matches: 117, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
79 2 0.02
80 115 0.98
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (79 bp):
CCGGATATAGTACTCGCACGAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGC
CTTCGGGGATTAGC
Found at i:36289682 original size:15 final size:15
Alignment explanation
Indices: 36289643--36289722 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
36289633 GTATCTTGGG
*
36289643 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
36289658 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
36289673 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
36289688 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
36289703 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
36289717 TTTCTT
1 TTTCTT
36289723 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:36289712 original size:30 final size:30
Alignment explanation
Indices: 36289634--36289721 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
36289624 CATAGTATCG
* * *
36289634 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
36289664 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
36289694 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
36289722 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:36312459 original size:40 final size:40
Alignment explanation
Indices: 36312365--36312549 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
36312355 TATTCGAATG
*
36312365 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
36312406 ATAACCGGACTAAGAT-CTGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-TGACT
* * *
36312446 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
36312486 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
36312526 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
36312550 CTTGCGCAAG
Statistics
Matches: 119, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
39 1 0.01
40 89 0.75
41 28 0.24
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:36320535 original size:40 final size:40
Alignment explanation
Indices: 36320441--36320625 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
36320431 TATTCGAATG
*
36320441 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
36320482 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-TGACT
* * *
36320522 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
36320562 ATATTCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
36320602 ACATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
36320626 CTTGCGCAAG
Statistics
Matches: 118, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
39 1 0.01
40 87 0.74
41 29 0.25
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:36321066 original size:31 final size:31
Alignment explanation
Indices: 36321028--36321090 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
36321018 CGTCAGCTAT
36321028 CGGACTCGGGAGTGTCGAAGTCGAAGTCGCC
1 CGGACTCGGGAGTGTCGAAGTCGAAGTCGCC
36321059 CGGACTCGGGAGTGTCGAAGTCGAAGTCGCC
1 CGGACTCGGGAGTGTCGAAGTCGAAGTCGCC
36321090 C
1 C
36321091 ACACTATCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.19, C:0.27, G:0.38, T:0.16
Consensus pattern (31 bp):
CGGACTCGGGAGTGTCGAAGTCGAAGTCGCC
Found at i:36324079 original size:25 final size:25
Alignment explanation
Indices: 36324036--36324106 Score: 126
Period size: 25 Copynumber: 2.9 Consensus size: 25
36324026 TATGCTCATA
*
36324036 CGAGCTATA-AATGGTAAGCTCCTC
1 CGAGCTAAATAATGGTAAGCTCCTC
36324060 CGAGCTAAATAATGGTAAGCTCCTC
1 CGAGCTAAATAATGGTAAGCTCCTC
36324085 CGAGCTAAATAATGGTAAGCTC
1 CGAGCTAAATAATGGTAAGCTC
36324107 ATACAAGCTG
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
24 8 0.18
25 37 0.82
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (25 bp):
CGAGCTAAATAATGGTAAGCTCCTC
Found at i:36324115 original size:25 final size:25
Alignment explanation
Indices: 36324029--36324145 Score: 121
Period size: 25 Copynumber: 4.7 Consensus size: 25
36324019 GTACATGTAT
*
36324029 GCTCATACGAGCTATA-AATGGTAA
1 GCTCATACGAGCTAAATAATGGTAA
* *
36324053 GCTCCTCCGAGCTAAATAATGGTAA
1 GCTCATACGAGCTAAATAATGGTAA
* *
36324078 GCTCCTCCGAGCTAAATAATGGTAA
1 GCTCATACGAGCTAAATAATGGTAA
* * *
36324103 GCTCATACAAGCTGAGT-ATCGGTAA
1 GCTCATACGAGCTAAATAAT-GGTAA
*
36324128 GCTCATAAGAGCTGAAAT
1 GCTCATACGAGCT-AAAT
36324146 CAGTAACCTT
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
24 15 0.19
25 61 0.78
26 2 0.03
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (25 bp):
GCTCATACGAGCTAAATAATGGTAA
Found at i:36331185 original size:42 final size:42
Alignment explanation
Indices: 36331125--36331210 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
36331115 TTAAAAACTA
*
36331125 TAAATTTAAATCCGTAAAATTTTCCTGAAACTAGACTCATAT
1 TAAATTTAAATCCATAAAATTTTCCTGAAACTAGACTCATAT
*
36331167 TAAATTTAAATCCATAAAATTTTCCTGAAACTATACTCATAT
1 TAAATTTAAATCCATAAAATTTTCCTGAAACTAGACTCATAT
36331209 TA
1 TA
36331211 CTTCTTACTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (42 bp):
TAAATTTAAATCCATAAAATTTTCCTGAAACTAGACTCATAT
Found at i:36338216 original size:38 final size:38
Alignment explanation
Indices: 36338173--36338303 Score: 118
Period size: 38 Copynumber: 3.2 Consensus size: 38
36338163 TTTCAAATTA
*
36338173 ACATGTATAACCATGGCATATCCACTTAGCACCACATT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
* * * *
36338211 ACATGTTTAACCGTGGTATATTCATTTAGCACCACATTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACA-T--T
* *
36338252 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACATT
36338296 ACATGTAT
1 ACATGTAT
36338304 CAATATGTGT
Statistics
Matches: 72, Mismatches: 12, Indels: 18
0.71 0.12 0.18
Matches are distributed among these distances:
38 32 0.44
39 1 0.01
40 4 0.06
41 2 0.03
42 1 0.01
43 1 0.01
44 2 0.03
45 3 0.04
46 1 0.01
47 25 0.35
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.31
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
Found at i:36338272 original size:47 final size:48
Alignment explanation
Indices: 36338218--36338322 Score: 140
Period size: 47 Copynumber: 2.2 Consensus size: 48
36338208 ATTACATGTT
* *
36338218 TAACCGTGGTATATTCATTTAGCACCACATTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
* * * *
36338265 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
*
36338313 TAATCGTGGT
1 TAACCGTGGT
36338323 TGTAACACCC
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
47 28 0.57
48 21 0.43
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACATTACATGAATCAATATATG
Found at i:36344661 original size:56 final size:56
Alignment explanation
Indices: 36344575--36344750 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
36344565 ACAAGGGATG
*
36344575 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
36344631 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
36344687 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
36344743 ATGGGCAA
1 ATGGGCAA
36344751 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:36346118 original size:40 final size:40
Alignment explanation
Indices: 36345880--36346104 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
36345870 TCGAATGATG
* * * *
36345880 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
36345920 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36345960 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36345999 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36346039 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36346080 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36346105 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36346126 original size:119 final size:119
Alignment explanation
Indices: 36345880--36346127 Score: 290
Period size: 119 Copynumber: 2.1 Consensus size: 119
36345870 TCGAATGATG
* *
36345880 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
36345945 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
36345999 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
36346062 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
36346119 TCC-GGTTAA
1 TCCGGGTTAA
36346128 ATTCGAAGGT
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 76 0.69
120 31 0.28
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:36350104 original size:36 final size:37
Alignment explanation
Indices: 36350032--36350109 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
36350022 TTATTACGAA
* *
36350032 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
36350069 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
36350105 GTCTT
1 GTCTT
36350110 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:36350343 original size:47 final size:47
Alignment explanation
Indices: 36350228--36350536 Score: 496
Period size: 47 Copynumber: 6.6 Consensus size: 47
36350218 CCCTTCGGGA
* * * * * *
36350228 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36350275 CCTGTCAC--ATATACACTTTCACATTCAACACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36350320 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36350367 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36350414 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36350461 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36350510 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36350537 ACCAACCCTT
Statistics
Matches: 244, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
45 36 0.15
47 161 0.66
49 47 0.19
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36357184 original size:56 final size:56
Alignment explanation
Indices: 36357098--36357217 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
36357088 ACAAGGGATG
36357098 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
36357154 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
36357210 ATGGGCAA
1 ATGGGCAA
36357218 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:36358581 original size:40 final size:40
Alignment explanation
Indices: 36358343--36358567 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
36358333 TCGAATGATG
* * * *
36358343 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
36358383 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36358423 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36358462 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36358502 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36358543 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36358568 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36358589 original size:119 final size:119
Alignment explanation
Indices: 36358343--36358600 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
36358333 TCGAATGATG
* *
36358343 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
36358408 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
36358462 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
36358525 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
36358582 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36358601 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:36362481 original size:38 final size:40
Alignment explanation
Indices: 36362430--36362614 Score: 126
Period size: 38 Copynumber: 4.3 Consensus size: 40
36362420 CTATGGCATG
36362430 TCCACTTAGCACCACGT-T-ATATGTTTAACCGTGGTATA
1 TCCACTTAGCACCACGTATAATATGTTTAACCGTGGTATA
* *
36362468 TCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATA
1 TCCACTTAGCACCACG-T-AT-AAT--ATGT-T-TAACCGTGGTATA
* * *
36362515 TCCAATTAGCACCATGTTACATGTATCAATATGTGTAATCGTGGTATA
1 TCCACTTAGCACC-----AC--GTAT-AATATGTTTAACCGTGGTATA
* * *
36362563 TCCACTTAGCACCACGT-T-ACACGTATAACCGTGGTATA
1 TCCACTTAGCACCACGTATAATATGTTTAACCGTGGTATA
*
36362601 TTCACTTAGCACCA
1 TCCACTTAGCACCA
36362615 TGTTTTTCCA
Statistics
Matches: 117, Mismatches: 14, Indels: 32
0.72 0.09 0.20
Matches are distributed among these distances:
38 45 0.38
39 1 0.01
40 1 0.01
41 3 0.03
43 4 0.03
45 3 0.03
46 1 0.01
47 24 0.21
48 23 0.20
50 3 0.03
52 7 0.06
53 1 0.01
54 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (40 bp):
TCCACTTAGCACCACGTATAATATGTTTAACCGTGGTATA
Found at i:36362558 original size:48 final size:48
Alignment explanation
Indices: 36362448--36362588 Score: 203
Period size: 48 Copynumber: 3.0 Consensus size: 48
36362438 GCACCACGTT
* *
36362448 ATATGTTTAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCA
1 ATATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCA
* * * *
36362495 ATATATGTAACCGTGGCATATCCAATTAGCACCATGTTACATGTATCA
1 ATATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCA
* *
36362543 ATATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 ATATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
36362589 AACCGTGGTA
Statistics
Matches: 81, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
47 34 0.42
48 47 0.58
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (48 bp):
ATATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCA
Found at i:36366215 original size:45 final size:45
Alignment explanation
Indices: 36366166--36366268 Score: 206
Period size: 45 Copynumber: 2.3 Consensus size: 45
36366156 AATTGAGATG
36366166 GCACTAAGTGTGCGAAAATCGTTCTAGCTTCGGCTAACCCTTAAA
1 GCACTAAGTGTGCGAAAATCGTTCTAGCTTCGGCTAACCCTTAAA
36366211 GCACTAAGTGTGCGAAAATCGTTCTAGCTTCGGCTAACCCTTAAA
1 GCACTAAGTGTGCGAAAATCGTTCTAGCTTCGGCTAACCCTTAAA
36366256 GCACTAAGTGTGC
1 GCACTAAGTGTGC
36366269 AGATGTTAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (45 bp):
GCACTAAGTGTGCGAAAATCGTTCTAGCTTCGGCTAACCCTTAAA
Found at i:36367321 original size:21 final size:21
Alignment explanation
Indices: 36367295--36367339 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
36367285 AAATGAATGT
*
36367295 TAACATTTTGATTTTGTCCGG
1 TAACATTTTGATTTTGTCAGG
36367316 TAACATTTTGATTTTGTCAGG
1 TAACATTTTGATTTTGTCAGG
36367337 TAA
1 TAA
36367340 TGCCTTTAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47
Consensus pattern (21 bp):
TAACATTTTGATTTTGTCAGG
Found at i:36368691 original size:48 final size:48
Alignment explanation
Indices: 36368615--36368827 Score: 229
Period size: 48 Copynumber: 4.4 Consensus size: 48
36368605 CATGTCCTAG
* * * *
36368615 ACATGGTCTTACACTAGCTC-TCATAACAATGCCAAGACCATTTTCCAA
1 ACATGGTCTTACACTGGCTCAT-ACAACAATGCCATGACCATGTTCCAA
36368663 ACATGGTCTTACACTGGCTCATACAACAATGCCGATGA-CATGTTCCAA
1 ACATGGTCTTACACTGGCTCATACAACAATGCC-ATGACCATGTTCCAA
* *
36368711 ACATGGTCTTACACTGTCTCATACAACAATGTCGATG-CCATGTTCCAA
1 ACATGGTCTTACACTGGCTCATACAACAATG-CCATGACCATGTTCCAA
* * * * * *
36368759 ACATGGTCTTACACTGGCTCACATATCGAA-GTCGATG-CCATGTCCCAG
1 ACATGGTCTTACACTGGCTCATACAAC-AATG-CCATGACCATGTTCCAA
*
36368807 ACATGGTCTTACACTGTCTCA
1 ACATGGTCTTACACTGGCTCA
36368828 CATATAACCT
Statistics
Matches: 147, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
48 140 0.95
49 7 0.05
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (48 bp):
ACATGGTCTTACACTGGCTCATACAACAATGCCATGACCATGTTCCAA
Found at i:36368739 original size:96 final size:94
Alignment explanation
Indices: 36368597--36368827 Score: 288
Period size: 96 Copynumber: 2.4 Consensus size: 94
36368587 TTATATTGGC
*
36368597 GCCGATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATAACAATG-CCAAGACCATTTTC
1 GCCGATGCCATGTTCC-AGACATGGTCTTACACT-G-TCTCATAACAATGTCCAAG-CCATGTTC
*
36368660 CAAACATGGTCTTACACTGGCTCATACAAC-AA
62 CAAACATGGTCTTACACTGGCTCACACAACGAA
* * * *
36368692 TGCCGATGACATGTTCCAAACATGGTCTTACACTGTCTCATACAACAATGTCGATGCCATGTTCC
1 -GCCGATGCCATGTTCCAGACATGGTCTTACACTGTCTCAT--AACAATGTCCAAGCCATGTTCC
* *
36368757 AAACATGGTCTTACACTGGCTCACATATCGAA
63 AAACATGGTCTTACACTGGCTCACACAACGAA
* *
36368789 GTCGATGCCATGTCCCAGACATGGTCTTACACTGTCTCA
1 GCCGATGCCATGTTCCAGACATGGTCTTACACTGTCTCA
36368828 CATATAACCT
Statistics
Matches: 118, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
94 6 0.05
95 1 0.01
96 103 0.87
97 8 0.07
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (94 bp):
GCCGATGCCATGTTCCAGACATGGTCTTACACTGTCTCATAACAATGTCCAAGCCATGTTCCAAA
CATGGTCTTACACTGGCTCACACAACGAA
Found at i:36373671 original size:30 final size:29
Alignment explanation
Indices: 36373635--36373702 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 29
36373625 ATGTCCTGCG
*
36373635 GCCGTGTCCTTCACACGGCCAAGACACAC
1 GCCGTGTCCTTCACACAGCCAAGACACAC
**
36373664 AGCCGTGTCCTTCACACAGCTGAGACACAC
1 -GCCGTGTCCTTCACACAGCCAAGACACAC
36373694 GACCGTGTC
1 G-CCGTGTC
36373703 TCTGCCCGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 1 0.03
30 33 0.97
ACGTcount: A:0.24, C:0.38, G:0.22, T:0.16
Consensus pattern (29 bp):
GCCGTGTCCTTCACACAGCCAAGACACAC
Found at i:36374922 original size:48 final size:48
Alignment explanation
Indices: 36374827--36374971 Score: 175
Period size: 48 Copynumber: 3.0 Consensus size: 48
36374817 ACATAGTAGA
* * * *
36374827 ATGCCAATGCCATATCCCGAATATGG-CTTACATGGGATCACATATCG
1 ATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACAGATCG
* **
36374874 ATGCCAATGCCATGTCCCAAACATGGTCTTACGTGGGATCGTAGATCG
1 ATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACAGATCG
* * * * *
36374922 ATGCCAATGTCATGTCCCAGACATGGTTTTACATGGGATCTCATATCG
1 ATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACAGATCG
36374970 AT
1 AT
36374972 ACCGATAGCC
Statistics
Matches: 83, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 23 0.28
48 60 0.72
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACAGATCG
Found at i:36378970 original size:17 final size:17
Alignment explanation
Indices: 36378948--36379008 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
36378938 ACTACAAAAC
36378948 ATTTATATTATTAATAT
1 ATTTATATTATTAATAT
* *
36378965 ATTTATAATT-GTAATAA
1 ATTTAT-ATTATTAATAT
*
36378982 ATATT-TATTATTAAAAT
1 AT-TTATATTATTAATAT
*
36378999 ATTAATATTA
1 ATTTATATTA
36379009 AATATTTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
16 4 0.12
17 25 0.74
18 5 0.15
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
ATTTATATTATTAATAT
Found at i:36383039 original size:27 final size:27
Alignment explanation
Indices: 36383005--36383074 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
36382995 ATTGTTCTCT
**
36383005 TCAGATTTCTTGTCATTCTCATTTGAA
1 TCAGATTTCTTGTCATTCTCATCCGAA
*
36383032 TCAGATTTCTTGTCAGTCTCATCCGAA
1 TCAGATTTCTTGTCATTCTCATCCGAA
36383059 TCAGATTTCTTGTCAT
1 TCAGATTTCTTGTCAT
36383075 CAGAATTCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.44
Consensus pattern (27 bp):
TCAGATTTCTTGTCATTCTCATCCGAA
Found at i:36388835 original size:30 final size:30
Alignment explanation
Indices: 36388800--36388868 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
36388790 ACATACCTGA
36388800 ATCACTTAATATGTAATACGAGTTCAATTT
1 ATCACTTAATATGTAATACGAGTTCAATTT
* *
36388830 ATCACTTAATGTGTAATACGCGTTCAATTT
1 ATCACTTAATATGTAATACGAGTTCAATTT
36388860 ATCATCTTA
1 ATCA-CTTA
36388869 GCATAGGATC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 32 0.89
31 4 0.11
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (30 bp):
ATCACTTAATATGTAATACGAGTTCAATTT
Found at i:36396103 original size:43 final size:42
Alignment explanation
Indices: 36396025--36396128 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 42
36396015 TAACGAGATG
* * *
36396025 TGATTATGTGTAAGACCAT-GTCTGGGACATTGGCATCATTATA
1 TGATTACGTGTAAGACCATAGTCTGGGACATCGGCATC--CATA
**
36396068 TGATTACGTGTAAGACCATAGT-TGGGTTATCGGCATCCATA
1 TGATTACGTGTAAGACCATAGTCTGGGACATCGGCATCCATA
* *
36396109 TGATAACATGTAAGACCATA
1 TGATTACGTGTAAGACCATA
36396129 TCTAGGATAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 21 0.40
43 30 0.57
44 2 0.04
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (42 bp):
TGATTACGTGTAAGACCATAGTCTGGGACATCGGCATCCATA
Found at i:36400738 original size:54 final size:54
Alignment explanation
Indices: 36400664--36400793 Score: 145
Period size: 54 Copynumber: 2.4 Consensus size: 54
36400654 ATTATTGAAA
* * * *
36400664 TACCCTCGACTTGTAAAATTACCAAAGTA-CCTCCGATTTACATAATTACCGTTT
1 TACCCTCGACTTATAGAATTACCAAAGTACCCT-CGATTTACAGAAGTACCGTTT
* ****
36400718 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAGAAGTACCGTTT
1 TACCCTCGACTTATAGAATTACCAAAGTACCCTCGATTTACAGAAGTACCGTTT
* *
36400772 TACCCTTGATTTATAGAATTAC
1 TACCCTCGACTTATAGAATTAC
36400794 TTTTTTACCC
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
54 60 0.95
55 3 0.05
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (54 bp):
TACCCTCGACTTATAGAATTACCAAAGTACCCTCGATTTACAGAAGTACCGTTT
Found at i:36400821 original size:27 final size:27
Alignment explanation
Indices: 36400697--36400820 Score: 176
Period size: 27 Copynumber: 4.6 Consensus size: 27
36400687 AAAGTACCTC
*
36400697 CGATTTACATAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
36400724 CGACTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
36400751 CGATTTACAGAAGTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * **
36400778 TGATTTATAGAATTACTTTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
36400805 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
36400821 TAAAATACCC
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:36400829 original size:27 final size:27
Alignment explanation
Indices: 36400799--36400991 Score: 178
Period size: 27 Copynumber: 7.2 Consensus size: 27
36400789 ATTACTTTTT
** *
36400799 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
36400826 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * *
36400852 TACCATTGGTTTGTAAAATTA-CAGAAA
1 TACCCTCGATTTGTAAAATTACCA-AAA
*
36400879 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
36400906 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * *
36400933 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
* *
36400960 TGCCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
36400987 TACCC
1 TACCC
36400992 CTGATTTACA
Statistics
Matches: 134, Mismatches: 25, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
26 25 0.19
27 106 0.79
28 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:36400943 original size:81 final size:81
Alignment explanation
Indices: 36400799--36400993 Score: 284
Period size: 81 Copynumber: 2.4 Consensus size: 81
36400789 ATTACTTTTT
* ** * * * *
36400799 TACCCTCGATTTACAAAATTACTAAAATA-CCCTAGTCTGTAAAATTGCTAAAATACCATTGGTT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACCACTGGTT
36400863 TGTAAAATTACAGAAA
66 TGTAAAATTACAGAAA
*
36400879 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACCACTGGTT
* *
36400944 TGTGAAATTACCGAAA
66 TGTAAAATTACAGAAA
*
36400960 TGCCCTCAATTTGTAAAATTACCAAAATACCCCT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCT
36400994 GATTTACAAA
Statistics
Matches: 103, Mismatches: 11, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
80 25 0.24
81 78 0.76
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACCACTGGTT
TGTAAAATTACAGAAA
Found at i:36401014 original size:54 final size:54
Alignment explanation
Indices: 36400861--36401019 Score: 150
Period size: 54 Copynumber: 2.9 Consensus size: 54
36400851 ATACCATTGG
* *
36400861 TTTGTAAAATTA-CAGAAATACC-CTCAATTTGTA-AAATTACCA-AAATACCC-CTAG
1 TTTGTAAAATTACCA-AAATACCACT-GATTTG-ACAAATTA-CAGAAATACCCTC-AA
* ** * *
36400915 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATGCCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGATTTGACAAATTACAGAAATACCCTCAA
*
36400969 TTTGTAAAATTACCAAAATACCCCTGATTT-ACAAAGTTACAGAAATACCCT
1 TTTGTAAAATTACCAAAATACCACTGATTTGACAAA-TTACAGAAATACCCT
36401020 TGACTTTCTA
Statistics
Matches: 87, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
53 4 0.05
54 78 0.90
55 5 0.06
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGATTTGACAAATTACAGAAATACCCTCAA
Done.