Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 110 of 311
Found at i:36401069 original size:27 final size:26
Alignment explanation
Indices: 36401030--36401080 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
36401020 TGACTTTCTA
36401030 AAAATTATAGAAATACCTTTGGTTTAC
1 AAAATTATAGAAATACC-TTGGTTTAC
36401057 AAAATTACT-GAAATACCTTGGTTT
1 AAAATTA-TAGAAATACCTTGGTTT
36401081 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.30
27 15 0.65
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (26 bp):
AAAATTATAGAAATACCTTGGTTTAC
Found at i:36401172 original size:27 final size:26
Alignment explanation
Indices: 36401142--36401225 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 26
36401132 TAGGTAAAAA
36401142 GACCGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCC-TGTAGGGTAAAGT
36401169 GACCGTAAAGTCCCTGTAGGGTAAAGT
1 GACCGTAAAG-CCCTGTAGGGTAAAGT
* * *
36401196 GACCGTAATACCCCTGTATGGTAAAAT
1 GACCGTAA-AGCCCTGTAGGGTAAAGT
36401223 GAC
1 GAC
36401226 GAATATGCCA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
27 48 0.92
28 4 0.08
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (26 bp):
GACCGTAAAGCCCTGTAGGGTAAAGT
Found at i:36402429 original size:25 final size:25
Alignment explanation
Indices: 36402383--36402430 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
36402373 TTATAACATG
* * *
36402383 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
36402408 AAAATGACCATTATACCTCTAGG
1 AAAATGACCATTATACCCCTAGG
36402431 GTTTATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:36402481 original size:9 final size:9
Alignment explanation
Indices: 36402469--36402525 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
36402459 TTTGATAAAC
36402469 ATGATATGT
1 ATGATATGT
*
36402478 ATGATATGCAC
1 ATGATATG--T
*
36402489 ATGACATGT
1 ATGATATGT
*
36402498 ATGATATGCAC
1 ATGATATG--T
36402509 ATGATATGT
1 ATGATATGT
36402518 ATGATATG
1 ATGATATG
36402526 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:36402492 original size:20 final size:20
Alignment explanation
Indices: 36402467--36402537 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
36402457 ATTTTGATAA
36402467 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36402487 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
36402507 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36402527 ACATGAGATGT
1 ACATGATATGT
36402538 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36402514 original size:11 final size:11
Alignment explanation
Indices: 36402478--36402532 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
36402468 CATGATATGT
36402478 ATGATATGCAC
1 ATGATATGCAC
* *
36402489 ATGACATG--T
1 ATGATATGCAC
36402498 ATGATATGCAC
1 ATGATATGCAC
*
36402509 ATGATATG--T
1 ATGATATGCAC
36402518 ATGATATGCAC
1 ATGATATGCAC
36402529 ATGA
1 ATGA
36402533 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:36402663 original size:25 final size:24
Alignment explanation
Indices: 36402584--36402777 Score: 252
Period size: 25 Copynumber: 8.0 Consensus size: 24
36402574 AGGAAGTGGA
36402584 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
36402607 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
36402630 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
36402655 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
36402680 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* * *
36402705 AAAAGGCTTATGCCCAAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
36402729 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
36402753 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
36402778 GATAAAGCAG
Statistics
Matches: 155, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
23 45 0.29
24 29 0.19
25 81 0.52
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:36403006 original size:31 final size:31
Alignment explanation
Indices: 36402970--36403033 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
36402960 CGTTTACAGT
* *
36402970 AAAGGCTTCGGCCTAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATAAGAAATATGA
**
36403001 AAAGGCTTCGGCCCAGTGTTAAGAAATATGA
1 AAAGGCTTCGGCCCAGTAATAAGAAATATGA
36403032 AA
1 AA
36403034 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATAAGAAATATGA
Found at i:36404446 original size:42 final size:43
Alignment explanation
Indices: 36404341--36404452 Score: 129
Period size: 44 Copynumber: 2.6 Consensus size: 43
36404331 TGATATGTGT
* * * *
36404341 TTTCGTGTAAGACCACGTCTGGGACGTTGGGATCAACTTATGA
1 TTTCGTGTAAGACCATGTCTGGGACATTAGCATCAACTTATGA
* *
36404384 TTTACATGTAAGACCATGTCTGGGACATTAGCATCGTA-TT-TGA
1 TTT-CGTGTAAGACCATGTCTGGGACATTAGCATC-AACTTATGA
*
36404427 TTTCGTGTAAGACCTTGTCTGGGACA
1 TTTCGTGTAAGACCATGTCTGGGACA
36404453 GTGGCTTCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 21 0.36
43 9 0.15
44 28 0.47
45 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
TTTCGTGTAAGACCATGTCTGGGACATTAGCATCAACTTATGA
Found at i:36404468 original size:43 final size:42
Alignment explanation
Indices: 36404341--36404494 Score: 139
Period size: 43 Copynumber: 3.6 Consensus size: 42
36404331 TGATATGTGT
* * *
36404341 TTTCGTGTAAGACCACGTCTGGGAC-GTTGGGATCAACTTATGA
1 TTTCATGTAAGACCACGTCTGGGACAG-TGGCATCAAATT-TGA
* * * **
36404384 TTTACATGTAAGACCATGTCTGGGACATTAGCATCGTATTTGA
1 TTT-CATGTAAGACCACGTCTGGGACAGTGGCATCAAATTTGA
* ** *
36404427 TTTCGTGTAAGACCTTGTCTGGGACAGTGGCTTCAAAATTTGA
1 TTTCATGTAAGACCACGTCTGGGACAGTGGCATC-AAATTTGA
* *
36404470 TTACATGTATGACCACGTCTGGGAC
1 TTTCATGTAAGACCACGTCTGGGAC
36404495 GTTGGCACTG
Statistics
Matches: 88, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
42 26 0.30
43 35 0.40
44 27 0.31
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TTTCATGTAAGACCACGTCTGGGACAGTGGCATCAAATTTGA
Found at i:36425285 original size:47 final size:47
Alignment explanation
Indices: 36425208--36425338 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
36425198 GTGCGAATAA
* * * *
36425208 TACCTTGATTTGGCTACGGGCTATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTAAGAGAACT
* * * * *
36425255 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCTAAGATAACT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTAAGAGAACT
* *
36425302 TACCTTGATTAGGCTACGGGCCATGATGTAGGTATTT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTT
36425339 ATCGATTGTG
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTAAGAGAACT
Found at i:36436566 original size:44 final size:44
Alignment explanation
Indices: 36436501--36436584 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
36436491 TTGATATCTC
* * *
36436501 AAAGTCCATGGTTGTACCATGGTAATTAAGGAAGAATTGATGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
* *
36436545 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
36436585 AAGTTAAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.27
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGATGGA
Found at i:36436841 original size:54 final size:54
Alignment explanation
Indices: 36436777--36436994 Score: 206
Period size: 54 Copynumber: 4.0 Consensus size: 54
36436767 TTGGTAAGAT
* *
36436777 AAGGATATCATGTAAGACCATGCCAAGTCATGGCATTGATAAGTTCTATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
* * * * * *
36436831 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTCATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGG-A
* * * * * * *
36436887 AAGG-TCCCATGTAAGACCATTCCAAGGCATGGCATTGGTGAGTTC-ATAACGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
* * * * * * *
36436939 AAGGATACCACGTAAGACCATGTCAAGACATGGTAATGGTAAGTTCAAAAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
36436993 AA
1 AA
36436995 AGGTTCCCGA
Statistics
Matches: 132, Mismatches: 28, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
52 4 0.03
53 38 0.29
54 46 0.35
55 39 0.30
56 5 0.04
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGA
Found at i:36436901 original size:55 final size:54
Alignment explanation
Indices: 36436777--36436971 Score: 216
Period size: 54 Copynumber: 3.6 Consensus size: 54
36436767 TTGGTAAGAT
* * * *
36436777 AAGGATATCATGTAAGACCATGCCAAGTCATGGCATTGATAAGTTCTATAAGGA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGA
* * * *
36436831 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTCATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGG-A
* * * * *
36436887 AAGG-TCCCATGTAAGACCAT-TCCAAGGCATGGCATTGGTGAGTTC-ATAACGT
1 AAGGATACCATGTAAGACCATGT-CAAGACATGGCATTGATGAGTTCTATAAGGA
*
36436939 AAGGATACCACGTAAGACCATGTCAAGACATGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGG
36436972 TAATGGTAAG
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
52 4 0.03
53 28 0.24
54 42 0.36
55 39 0.33
56 5 0.04
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGA
Found at i:36438063 original size:30 final size:30
Alignment explanation
Indices: 36438017--36438076 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
36438007 TTCCCGAGCC
36438017 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
36438047 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
36438077 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:36438553 original size:46 final size:46
Alignment explanation
Indices: 36438503--36438678 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
36438493 TGGTTGAGCA
*
36438503 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
36438549 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
36438596 TCCGAAATCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
36438642 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36438679 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.58
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:36438659 original size:93 final size:93
Alignment explanation
Indices: 36438500--36438671 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
36438490 GGATGGTTGA
* * * *
36438500 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
36438565 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
36438593 GCATCCGAAATCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
36438658 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
36438672 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36441934 original size:40 final size:40
Alignment explanation
Indices: 36441840--36442064 Score: 215
Period size: 40 Copynumber: 5.6 Consensus size: 40
36441830 TATTCGAATG
*
36441840 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
36441881 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * * * * *
36441921 ATATCCAGGCTAAGACCCGAAGGCATTCGTGCGAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
36441961 ATATCCGGGCTAA-AACTCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTAGTGACT
* *
36442001 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
36442041 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
36442065 CTTGTGCAAG
Statistics
Matches: 155, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 3 0.02
40 121 0.78
41 30 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:36442047 original size:80 final size:79
Alignment explanation
Indices: 36441840--36442100 Score: 251
Period size: 80 Copynumber: 3.3 Consensus size: 79
36441830 TATTCGAATG
* * *
36441840 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGA-TCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACT-CGAAGG
* * *
36441904 CATTCGTGCGAGTTG-CT
64 CATTTGTGCAAG--GATT
* * * * * * *
36441921 ATATCCAGGCTAAGACCCGAAGGCATTCGTGCGAGCGATTATATCCGGGCTAAAACTCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACTCGAAGGCA
*
36441986 TTTGTGCTAGCGATT
66 TTTGTGCAAG-GATT
* * * *
36442001 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGC-
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACTCGAAGGCA
* *
36442065 CTTGTGCAAGTAGTT
66 TTTGTGCAAGGA-TT
*
36442080 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
36442101 ATTACTTGAG
Statistics
Matches: 148, Mismatches: 29, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
78 15 0.10
79 17 0.11
80 86 0.58
81 30 0.20
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACTCGAAGGCA
TTTGTGCAAGGATT
Found at i:36442061 original size:120 final size:121
Alignment explanation
Indices: 36441840--36442100 Score: 291
Period size: 120 Copynumber: 2.2 Consensus size: 121
36441830 TATTCGAATG
** * *
36441840 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
36441905 ATTCGTGCGAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTCGTGCGAGCGATT
66 ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGCATTCGTGCGAGCGATT
* * * *
36441961 ATATCCGGGCTAAAACTCGAAGGCATTTGTGCTA-GCGATTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * * * * *
36442024 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTT-GTGCAAG-TAGTT
65 CATTCATGCGAGTTG-CCACATCCAGGCTAAGACCCGAAGGCATTCGTGCGAGCGA-TT
*
36442080 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAAACCCGAAG
36442101 ATTACTTGAG
Statistics
Matches: 118, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
118 14 0.12
119 17 0.14
120 57 0.48
121 30 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGCATTCGTGCGAGCGATT
Found at i:36445376 original size:6 final size:6
Alignment explanation
Indices: 36445358--36445471 Score: 65
Period size: 6 Copynumber: 18.3 Consensus size: 6
36445348 AAGAAACATT
* * *
36445358 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGGTG AT-AGA TTCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * *
36445407 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
36445457 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
36445472 GTGAATGCAA
Statistics
Matches: 83, Mismatches: 13, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
5 6 0.07
6 59 0.71
7 14 0.17
8 4 0.05
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:36445403 original size:31 final size:31
Alignment explanation
Indices: 36445367--36445471 Score: 129
Period size: 31 Copynumber: 3.4 Consensus size: 31
36445357 TATCAGAACT
* * * *
36445367 AGAATCAGAATCAGAATTAGGTGATAGATTC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
36445398 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* *
36445429 AAAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
36445460 AAAAATCAGAAT
1 -AGAATCAGAAT
36445472 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
31 56 0.84
32 11 0.16
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:36445427 original size:19 final size:19
Alignment explanation
Indices: 36445403--36445460 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
36445393 GATTCAGAAT
36445403 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
36445422 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
36445434 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
36445453 CAGAATCA
1 CAGAATCA
36445461 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:36445656 original size:27 final size:27
Alignment explanation
Indices: 36445609--36445683 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
36445599 CTCAGTTATT
* * *
36445609 AGATATTGTGACAGAGTCACTAG-ATAC
1 AGATATTGTGGCAAAGCCACTAGAAT-C
36445636 AGATATTGTGGCAAAGCCACTAGAATC
1 AGATATTGTGGCAAAGCCACTAGAATC
*
36445663 AGATAATGTGGCAAAGCCACT
1 AGATATTGTGGCAAAGCCACT
36445684 TAATAGAAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 41 0.95
28 2 0.05
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (27 bp):
AGATATTGTGGCAAAGCCACTAGAATC
Found at i:36445835 original size:27 final size:27
Alignment explanation
Indices: 36445805--36445856 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
36445795 AATCGTCAAC
*
36445805 AAATATGTTAGGCAC-ATAGCCATAGGT
1 AAATACGTTAGGCACGA-AGCCATAGGT
*
36445832 AAATACGTTTGGCACGAAGCCATAG
1 AAATACGTTAGGCACGAAGCCATAG
36445857 TCAAGATGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (27 bp):
AAATACGTTAGGCACGAAGCCATAGGT
Found at i:36445888 original size:22 final size:22
Alignment explanation
Indices: 36445840--36445898 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
36445830 GTAAATACGT
*
36445840 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
36445862 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
36445884 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
36445899 CGATAATGGC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:36446276 original size:27 final size:27
Alignment explanation
Indices: 36446246--36446522 Score: 288
Period size: 27 Copynumber: 10.3 Consensus size: 27
36446236 GGGGCAAAAT
* *
36446246 GGTAATTTTACCCTA-AGAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
* * **
36446273 GGTAATTCTACCTTACAGGAGTAAATC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
36446300 AGTATTTCTAACCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36446327 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36446354 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
36446381 GGTAATTCTACTTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36446408 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36446435 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36446462 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** *
36446489 AGTAATTCTA-CGAACTAGGGGTATTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
36446516 GGTAATT
1 GGTAATT
36446523 TTGTAAACCA
Statistics
Matches: 208, Mismatches: 40, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
26 3 0.01
27 203 0.98
28 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:36446514 original size:54 final size:54
Alignment explanation
Indices: 36446247--36446499 Score: 339
Period size: 54 Copynumber: 4.7 Consensus size: 54
36446237 GGGCAAAATG
* * * * **
36446247 GTAATTTTACCCTA-AGAGGGTATCTCGGTAATTCTACCTTACAGGAGTAAATCA
1 GTAATTCTACCCTACA-AGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCA
* * * *
36446301 GTATTTCTAACCTATAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCA
* *
36446354 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACTTTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCA
36446409 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCA
* **
36446463 GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAC
36446500 GAACTAGGGG
Statistics
Matches: 176, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 173 0.98
55 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCA
Found at i:36446537 original size:27 final size:27
Alignment explanation
Indices: 36446480--36446565 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 27
36446470 TACCCTACAG
* *** * *
36446480 GGGTATTTTAGTAATTCTACGAACTAG
1 GGGTATTTTAGTAATTTTGTAAACCAA
*
36446507 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTGTAAACCAA
* *
36446534 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTGTAAACCAA
36446561 GGGTA
1 GGGTA
36446566 AAACGGTAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTGTAAACCAA
Found at i:36446592 original size:81 final size:81
Alignment explanation
Indices: 36446507--36446686 Score: 216
Period size: 81 Copynumber: 2.2 Consensus size: 81
36446497 TACGAACTAG
* *** * * *
36446507 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGG
1 GGGTAATTTGGTAATTTTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGA
36446572 TAATTCTGTAAATCGA
66 TAATTCTGTAAATCGA
** * * *** *
36446588 GGGTAAAATGGTAGTTCTGTAAATTGAGGGTAAAATAGTAATTCTATAAATCGATGGTAAAACGA
1 GGGTAATTTGGTAATTTTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGA
36446653 TAATTCTGTAAATCGA
66 TAATTCTGTAAATCGA
*
36446669 GGGTACTTTGGTAATTTT
1 GGGTAATTTGGTAATTTT
36446687 ACAAATTGAG
Statistics
Matches: 79, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.36
Consensus pattern (81 bp):
GGGTAATTTGGTAATTTTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGA
TAATTCTGTAAATCGA
Found at i:36446684 original size:27 final size:27
Alignment explanation
Indices: 36446544--36446673 Score: 179
Period size: 27 Copynumber: 4.8 Consensus size: 27
36446534 GGGTATTTTA
* *
36446544 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
36446571 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
36446598 GTAGTTCTGTAAATTGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
36446625 GTAATTCTATAAATCGATGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
36446652 ATAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
36446674 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:36446708 original size:81 final size:81
Alignment explanation
Indices: 36446538--36446711 Score: 204
Period size: 81 Copynumber: 2.1 Consensus size: 81
36446528 AACCAAGGGT
* * * *
36446538 ATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAGT
1 ATTTTAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAAT
** **
36446603 TCTGTAAATTGAGGGT
66 TCTACAAATTGAGGAC
*** * ***
36446619 AAAATAGTAATTCTATAAATCGATGGTAAAACGATAATTCTGTAAATCGAGGGTACTTTGGTAAT
1 ATTTTAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAAT
*
36446684 TTTACAAATTGAGGAC
66 TCTACAAATTGAGGAC
36446700 ATTTTAGTAATT
1 ATTTTAGTAATT
36446712 TGGTAAACTA
Statistics
Matches: 74, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.35
Consensus pattern (81 bp):
ATTTTAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAAT
TCTACAAATTGAGGAC
Found at i:36455640 original size:27 final size:27
Alignment explanation
Indices: 36455610--36455711 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
36455600 ATTCTGTTAA
* *
36455610 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
36455637 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
36455664 GTGGCTCTGCCACAATCTCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
36455691 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
36455712 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.78
28 7 0.11
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:36455879 original size:6 final size:6
Alignment explanation
Indices: 36455852--36455930 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
36455842 ATTCACATTT
* * * * *
36455852 TGATTT TGATTC TG-TTACC TGATAC TGATTC TAATCC TGATTC TG-TCACC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC TGAT--TC
36455902 TGATTC TGATTC TGATTC TGATTC TGATT
1 TGATTC TGATTC TGATTC TGATTC TGATT
36455931 TTAGTTATGA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
5 3 0.05
6 47 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
TGATTC
Found at i:36455896 original size:31 final size:31
Alignment explanation
Indices: 36455858--36455927 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
36455848 ATTTTGATTT
*
36455858 TGATTCTGTTACCTGATACTGATTCTAATCC
1 TGATTCTGTCACCTGATACTGATTCTAATCC
* * *
36455889 TGATTCTGTCACCTGATTCTGATTCTGATTC
1 TGATTCTGTCACCTGATACTGATTCTAATCC
36455920 TGATTCTG
1 TGATTCTG
36455928 ATTTTAGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (31 bp):
TGATTCTGTCACCTGATACTGATTCTAATCC
Found at i:36457946 original size:27 final size:27
Alignment explanation
Indices: 36457931--36458500 Score: 565
Period size: 27 Copynumber: 21.1 Consensus size: 27
36457921 CCAAAGTACT
*
36457931 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
* *
36457958 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
** *
36457985 CTCGATTTTTAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
*
36458012 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
36458039 CTC-AGTTTACAGAATTACCATTTTACC
1 CTCGA-TTTACAGAATTACCATTTTACC
* * * *
36458066 CTCGATTTACAAAATAATCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
* **
36458093 CTC-AGTTTATAGAATTACTGTTTTACC
1 CTCGA-TTTACAGAATTACCATTTTACC
* *
36458120 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
** * *
36458147 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
*
36458174 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
* *
36458201 CTC-AGTTCACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCATTTTACC
* * *
36458228 CTCGATTTATAGAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
*
36458255 CTC-AGTTTACAGAATTACCGTTTTACC
1 CTCGA-TTTACAGAATTACCATTTTACC
* *
36458282 CTC-AGTTTACAAAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCATTTTACC
* * * *
36458309 CTCGATTTATAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
* * *
36458336 CTCTATTTACAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
* * **
36458363 CTCAATTTATAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
** ** * *
36458390 CTTAATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
* ***
36458417 CTCGATTTATAGAATTACTGGTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
* * * *
36458444 CTCGGTTTACAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
*
36458471 CTCGATTTACAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
36458498 CTC
1 CTC
36458501 AATTGTGAAA
Statistics
Matches: 466, Mismatches: 69, Indels: 16
0.85 0.13 0.03
Matches are distributed among these distances:
26 4 0.01
27 458 0.98
28 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCATTTTACC
Found at i:36457960 original size:54 final size:54
Alignment explanation
Indices: 36457931--36458500 Score: 655
Period size: 54 Copynumber: 10.6 Consensus size: 54
36457921 CCAAAGTACT
* *
36457931 CTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACC
* * * * *
36457985 CTCGATTTTTAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACC
* * * * *
36458039 CTC-AGTTTACAGAATTACCATTTTACCCTCGATTTACAAAATAATCGTTTTACC
1 CTCGA-TTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACC
* *
36458093 CTC-AGTTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACC
1 CTCGA-TTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACC
* * * *
36458147 CTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACC
* * ** * *
36458201 CTC-AGTTCACAGAATTACTATTTTACCCTCGATTTATAGAATTATCGTTTTACC
1 CTCGA-TTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACC
* * **
36458255 CTC-AGTTTACAGAATTACCGTTTTACCCTC-AGTTTACAAAATTACTATTTTACC
1 CTCGA-TTTATAGAATTACCGTTTTACCCTCGA-TTTATAAAATTACCGTTTTACC
* * * *
36458309 CTCGATTTATAAAATTATCGTTTTACCCTCTATTTACAAAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACC
* * ** *
36458363 CTCAATTTATAGAATTACTGTTTTACCCTTAATTTGTAAAATTACCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACC
* * * * *
36458417 CTCGATTTATAGAATTACTGGTTTACCCTCGGTTTACAAAATTATCGTTTTACC
1 CTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACC
* **
36458471 CTCGATTTACAGAATTACTATTTTACCCTC
1 CTCGATTTATAGAATTACCGTTTTACCCTC
36458501 AATTGTGAAA
Statistics
Matches: 448, Mismatches: 62, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
53 3 0.01
54 442 0.99
55 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (54 bp):
CTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACC
Found at i:36458024 original size:81 final size:80
Alignment explanation
Indices: 36457931--36458500 Score: 712
Period size: 81 Copynumber: 7.0 Consensus size: 80
36457921 CCAAAGTACT
* *
36457931 CTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTTTA
1 CTCGATTTACAGAATTACCGTTTTACCCTC-ATTTACAGAATTACCGTTTTACCCTCGATTTATA
*
36457996 AAATTACCATTTTACC
65 AAATTACCGTTTTACC
* *
36458012 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACA
1 CTCGATTTACAGAATTACCGTTTTACCCTCA-TTTACAGAATTACCGTTTTACCCTCGATTTATA
* *
36458077 AAATAATCGTTTTACC
65 AAATTACCGTTTTACC
* * * *
36458093 CTC-AGTTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGT
1 CTCGA-TTTACAGAATTACCGTTTTACCCTC-ATTTACAGAATTACCGTTTTACCCTCGATTTAT
36458157 AAAATTACCGTTTTACC
64 AAAATTACCGTTTTACC
* **
36458174 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTCACAGAATTACTATTTTACCCTCGATTTATA
1 CTCGATTTACAGAATTACCGTTTTACCCTCA-TTTACAGAATTACCGTTTTACCCTCGATTTATA
* *
36458239 GAATTATCGTTTTACC
65 AAATTACCGTTTTACC
* **
36458255 CTC-AGTTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTATTTTACCCTCGATTTAT
1 CTCGA-TTTACAGAATTACCGTTTTACCCTCA-TTTACAGAATTACCGTTTTACCCTCGATTTAT
*
36458319 AAAATTATCGTTTTACC
64 AAAATTACCGTTTTACC
* * * * ** *
36458336 CTCTATTTACAAAATTACCGTTTTACCCTCAATTTATAGAATTACTGTTTTACCCTTAATTTGTA
1 CTCGATTTACAGAATTACCGTTTTACCCTC-ATTTACAGAATTACCGTTTTACCCTCGATTTATA
36458401 AAATTACCGTTTTACC
65 AAATTACCGTTTTACC
* * * * * * *
36458417 CTCGATTTATAGAATTACTGGTTTACCCTCGGTTTACAAAATTATCGTTTTACCCTCGATTTACA
1 CTCGATTTACAGAATTACCGTTTTACCCTC-ATTTACAGAATTACCGTTTTACCCTCGATTTATA
* **
36458482 GAATTACTATTTTACC
65 AAATTACCGTTTTACC
36458498 CTC
1 CTC
36458501 AATTGTGAAA
Statistics
Matches: 428, Mismatches: 53, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
80 4 0.01
81 420 0.98
82 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (80 bp):
CTCGATTTACAGAATTACCGTTTTACCCTCATTTACAGAATTACCGTTTTACCCTCGATTTATAA
AATTACCGTTTTACC
Found at i:36458539 original size:27 final size:27
Alignment explanation
Indices: 36458509--36458793 Score: 372
Period size: 27 Copynumber: 10.6 Consensus size: 27
36458499 TCAATTGTGA
* *
36458509 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
36458536 AATTACCGAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTATAGGGTAG
** *
36458563 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
36458590 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
36458617 AATTACCAAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
* *
36458644 AATTACTGAAATACCCATATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
36458671 AATTACCAAAATACCCCTATAGGGTAC
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
36458698 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
36458725 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
**
36458752 AATTATTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
36458779 ATTTATCGAGATACC
1 AATTACCGAAATACC
36458794 TTGTGGGGTA
Statistics
Matches: 223, Mismatches: 35, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 223 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAGGGTAG
Found at i:36459488 original size:27 final size:27
Alignment explanation
Indices: 36459458--36459559 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
36459448 ATTCTGTTAA
* *
36459458 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
36459485 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
36459512 GTGGCTCTGCCACAATCTCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
36459539 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
36459560 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.78
28 7 0.11
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:36459731 original size:31 final size:31
Alignment explanation
Indices: 36459696--36459768 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
36459686 TTGCATTCAC
*
36459696 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
* ** *
36459727 ATTCTAATCCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
36459758 ATTCTGATTTT
1 ATTCTGATTTT
36459769 AGTTATGATA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTG
Found at i:36462909 original size:16 final size:16
Alignment explanation
Indices: 36462888--36462926 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
36462878 TATGGCATGT
*
36462888 ATAGCTAGACTCTCAC
1 ATAGCTAGACTCTCAA
36462904 ATAGCTAGACTCTCAA
1 ATAGCTAGACTCTCAA
36462920 ATAGCTA
1 ATAGCTA
36462927 TGTTAGTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.26
Consensus pattern (16 bp):
ATAGCTAGACTCTCAA
Found at i:36466390 original size:41 final size:41
Alignment explanation
Indices: 36466331--36466455 Score: 207
Period size: 41 Copynumber: 3.0 Consensus size: 41
36466321 TTTTTAGACT
* *
36466331 TAGTAAACTTCTGATTTATTACGCACACGATTCAAAAATAC
1 TAGTAAACTTCTGGTTTATTATGCACACGATTCAAAAATAC
36466372 TAGTAAACTTCTGGTTTATTATGCACAC-ATTTCAAAAATAC
1 TAGTAAACTTCTGGTTTATTATGCACACGA-TTCAAAAATAC
*
36466413 TAGTAAACTTCTGGTTTATTATGCACACGATTCAACAATAC
1 TAGTAAACTTCTGGTTTATTATGCACACGATTCAAAAATAC
36466454 TA
1 TA
36466456 ATATATACAT
Statistics
Matches: 79, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
40 1 0.01
41 77 0.97
42 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.34
Consensus pattern (41 bp):
TAGTAAACTTCTGGTTTATTATGCACACGATTCAAAAATAC
Found at i:36468192 original size:24 final size:24
Alignment explanation
Indices: 36468163--36468212 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
36468153 TATTTATTAC
36468163 TAAGTTTTCACTTCTAGTGGTTAT
1 TAAGTTTTCACTTCTAGTGGTTAT
36468187 TAAGTTTTCACTTCTAGTGGTTAT
1 TAAGTTTTCACTTCTAGTGGTTAT
36468211 TA
1 TA
36468213 TTATGCCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.12, G:0.16, T:0.50
Consensus pattern (24 bp):
TAAGTTTTCACTTCTAGTGGTTAT
Found at i:36468213 original size:27 final size:27
Alignment explanation
Indices: 36468156--36468215 Score: 90
Period size: 24 Copynumber: 2.3 Consensus size: 27
36468146 ATCCTTTTAT
*
36468156 TTATTACTAAGTTTTCACTTCTAGTGG
1 TTATTATTAAGTTTTCACTTCTAGTGG
36468183 ---TTATTAAGTTTTCACTTCTAGTGG
1 TTATTATTAAGTTTTCACTTCTAGTGG
36468207 TTATTATTA
1 TTATTATTA
36468216 TGCCACTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
24 23 0.79
27 6 0.21
ACGTcount: A:0.23, C:0.12, G:0.13, T:0.52
Consensus pattern (27 bp):
TTATTATTAAGTTTTCACTTCTAGTGG
Found at i:36470577 original size:42 final size:43
Alignment explanation
Indices: 36470477--36470632 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 43
36470467 CGAAGCTAAC
* *
36470477 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCGATGCCACT
* * *
36470520 GTCCCAGACAGGGTCTTACATGAAATCATATAT-GATGTCGA-T
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCGATG-CCACT
* * *
36470562 GTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCAATGCCAAC-
1 GTCCCAGACATGGTCTTACATG-AAATC-AAATATCGATGCC-ACT
* *
36470606 GTCCCAGACGTGGTCTTACACGAAATC
1 GTCCCAGACATGGTCTTACATGAAATC
36470633 TCATATCGGA
Statistics
Matches: 95, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
42 25 0.26
43 44 0.46
44 26 0.27
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGAAATCAAATATCGATGCCACT
Found at i:36473234 original size:40 final size:41
Alignment explanation
Indices: 36473190--36473295 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 41
36473180 AAATCAGTGT
* * *
36473190 GGGCCTTAGCCCACTCAGATGCAGAATCAGA-AATGTACTA
1 GGGCCTTAGCCCACTCAGATACAAAATCAGACAATATACTA
* * *
36473230 GGGCCTTAGCCCAATCAGATACAAAATCAGACCTATATATTA
1 GGGCCTTAGCCCACTCAGATACAAAATCAGA-CAATATACTA
*
36473272 GGGCCTTAGCCCATCTCAGGTACA
1 GGGCCTTAGCCCA-CTCAGATACA
36473296 GTATGCAGAA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
40 28 0.51
42 19 0.35
43 8 0.15
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (41 bp):
GGGCCTTAGCCCACTCAGATACAAAATCAGACAATATACTA
Found at i:36476562 original size:20 final size:19
Alignment explanation
Indices: 36476526--36476575 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
36476516 AAGGGCTATT
36476526 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTAAAATAA
*
36476545 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTAAAATAA
*
36476565 TTGAAAATGTG
1 TTGTAAATGTG
36476576 AGTTGCTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 10 0.37
20 16 0.59
21 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.22, T:0.36
Consensus pattern (19 bp):
TTGTAAATGTGTAAAATAA
Found at i:36477205 original size:45 final size:48
Alignment explanation
Indices: 36477141--36477351 Score: 149
Period size: 48 Copynumber: 4.5 Consensus size: 48
36477131 TATGTGTGCT
*
36477141 AGTGTAAGACATGTTTGGGACAT-AATCGG-C-C-ACAT-TACAGGAGCC
1 AGTGTAAGACATGTCTGGGACATGAATCGGCCTCAACATATACA--AGCC
* *
36477186 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGAATCGGCCTCAACATATACAAGCC
* * *
36477234 AGTGTAAAACATGTCTGGGAC----AT--GCATCAACATTGAGACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGAATCGGCCTCAACA-T-ATAC-A-AGCC
* ** * * *
36477280 AGTGTAA-ACCACGTCTGGGACATCCATTGGCCTCAAGATATACAAGCT
1 AGTGTAAGA-CATGTCTGGGACATGAATCGGCCTCAACATATACAAGCC
* *
36477328 AGTGTAAGACCTATCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
36477352 GCGTTAGCTT
Statistics
Matches: 133, Mismatches: 16, Indels: 31
0.74 0.09 0.17
Matches are distributed among these distances:
42 7 0.05
43 1 0.01
44 5 0.04
45 24 0.18
46 27 0.20
47 1 0.01
48 46 0.35
49 5 0.04
50 9 0.07
51 1 0.01
52 7 0.05
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGAATCGGCCTCAACATATACAAGCC
Found at i:36477246 original size:48 final size:48
Alignment explanation
Indices: 36477182--36477351 Score: 173
Period size: 48 Copynumber: 3.6 Consensus size: 48
36477172 ACATTACAGG
*
36477182 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATACA
1 AGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCTCAAGATATACA
** * ** ** *
36477230 AGCCAGTGTAAAACATGTCTGGGACATGCATCAACATTGAGA-CGA-G
1 AGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCTCAAGATATACA
* * * *
36477276 AGCCAGTGTAAACCACGTCTGGGACATCCATTGGCCTCAAGATATACA
1 AGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCTCAAGATATACA
* * * *
36477324 AGCTAGTGTAAGACCTATCTGGGACATG
1 AGCCAGTGTAAAACATGTCTGGGACATG
36477352 GCGTTAGCTT
Statistics
Matches: 92, Mismatches: 28, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
46 33 0.36
47 2 0.02
48 57 0.62
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (48 bp):
AGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCTCAAGATATACA
Found at i:36477312 original size:94 final size:94
Alignment explanation
Indices: 36477181--36477351 Score: 263
Period size: 94 Copynumber: 1.8 Consensus size: 94
36477171 CACATTACAG
* *
36477181 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATACAAGCCAGTGTAAAACAT
1 GAGCCAGTGTAAGACACGTCTGGGACATCCATCGGCCTCAAGATATACAAGCCAGTGTAAAACAT
*
36477246 GTCTGGGACATGCATCAACATTGAGACGA
66 ATCTGGGACATGCATCAACATTGAGACGA
* * * *
36477275 GAGCCAGTGTAA-ACCACGTCTGGGACATCCATTGGCCTCAAGATATACAAGCTAGTGTAAGACC
1 GAGCCAGTGTAAGA-CACGTCTGGGACATCCATCGGCCTCAAGATATACAAGCCAGTGTAAAACA
36477339 TATCTGGGACATG
65 TATCTGGGACATG
36477352 GCGTTAGCTT
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
93 1 0.01
94 68 0.99
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (94 bp):
GAGCCAGTGTAAGACACGTCTGGGACATCCATCGGCCTCAAGATATACAAGCCAGTGTAAAACAT
ATCTGGGACATGCATCAACATTGAGACGA
Found at i:36477431 original size:49 final size:48
Alignment explanation
Indices: 36477371--36477538 Score: 141
Period size: 46 Copynumber: 3.5 Consensus size: 48
36477361 TGTTATGTGT
* *
36477371 CAGTGTAAGACCTGTCTGGGACATGGGATCGACACTGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGAATCGAC-CTGATAGATGAAAGC
* * * * *
36477420 CAGTGTAAGACCTGT-T-TGATA-GGCATC-AGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGAATCGA-CCT-GATAGATGAAAGC
* * **
36477466 CATTGTAAGACCTGTCTGGGACATGGAATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGAATCGAC-CTGATAGATGAAAGC
*
36477513 CAGAGTAAGACCATGTCTGGGACATG
1 CAGTGTAAGACC-TGTCTGGGACATG
36477539 CCGTCAGCAT
Statistics
Matches: 94, Mismatches: 17, Indels: 17
0.73 0.13 0.13
Matches are distributed among these distances:
45 3 0.03
46 30 0.32
47 18 0.19
48 17 0.18
49 24 0.26
50 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGAATCGACCTGATAGATGAAAGC
Found at i:36483704 original size:39 final size:40
Alignment explanation
Indices: 36483604--36483826 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
36483594 TTGAATGATG
* * * *
36483604 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
36483644 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
36483684 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36483723 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
36483763 TCCGGGTTAAGTCCCAAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36483804 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
36483827 CGAACGAGTA
Statistics
Matches: 160, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.22
40 115 0.72
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36483846 original size:80 final size:79
Alignment explanation
Indices: 36483604--36483851 Score: 218
Period size: 80 Copynumber: 3.1 Consensus size: 79
36483594 TTGAATGATG
* * * * * * *
36483604 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCTGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAG-CCCAAAGGCATTTGTGC-AAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
* ** * *
36483667 TTGTGCGAGATACTAAT
63 TCGAACGAGTTACTAAA
* * * * *
36483684 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGTTAAGCCCAAAGGCATTTGTGCAAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTCG
**
36483749 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
*
36483763 TCCGGGTTAAGTCCCAAAGGCATTTGTGCAAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAG-CCCAAAGGCATTTGTGCAAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
36483827 CGAACGAG-TAGCTATA
64 CGAACGAGTTA-CTAAA
36483843 TCC-GGTTAA
1 TCCGGGTTAA
36483852 ATTCCGAAGG
Statistics
Matches: 145, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 67 0.46
80 75 0.52
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGCCCAAAGGCATTTGTGCAAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTCG
AACGAGTTACTAAA
Found at i:36496667 original size:23 final size:23
Alignment explanation
Indices: 36496641--36496684 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
36496631 CGCAAAAATA
* *
36496641 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
36496664 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
36496685 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:36498117 original size:40 final size:40
Alignment explanation
Indices: 36498062--36498178 Score: 200
Period size: 40 Copynumber: 3.0 Consensus size: 40
36498052 AAGTTCAATA
36498062 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
36498102 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
* * *
36498142 TGATGTATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
36498179 TTGACAAAAT
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 11 0.15
40 63 0.85
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (40 bp):
TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
Found at i:36499691 original size:40 final size:40
Alignment explanation
Indices: 36499593--36499855 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
36499583 TCCTCGTTCA
* * * * *
36499593 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
36499632 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
36499672 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36499712 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
36499752 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
36499792 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
36499832 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36499856 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36507629 original size:40 final size:40
Alignment explanation
Indices: 36507531--36507793 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
36507521 TCCTCGTTCA
* * * * *
36507531 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
36507570 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
36507610 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36507650 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
36507690 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
36507730 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
36507770 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36507794 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36515563 original size:40 final size:40
Alignment explanation
Indices: 36515465--36515727 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
36515455 TCCTCGTTCA
* * * * *
36515465 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
36515504 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
36515544 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36515584 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
36515624 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
36515664 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
36515704 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36515728 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36518134 original size:23 final size:23
Alignment explanation
Indices: 36518108--36518151 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
36518098 CACAAAAATA
* *
36518108 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
36518131 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
36518152 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:36529218 original size:35 final size:35
Alignment explanation
Indices: 36529172--36529241 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
36529162 AGTACTACAA
* *
36529172 ATTCTTTCAGCTCAAGTATCCCAACTAATAGCTTT
1 ATTCTTTCAGCTCAAGTACCCCAACTAACAGCTTT
36529207 ATTCTTTCAGCTCAAGTACCCCAACTAACAGCTTT
1 ATTCTTTCAGCTCAAGTACCCCAACTAACAGCTTT
36529242 TTATCTTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (35 bp):
ATTCTTTCAGCTCAAGTACCCCAACTAACAGCTTT
Found at i:36555866 original size:27 final size:27
Alignment explanation
Indices: 36555836--36555897 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
36555826 GACCCCGGAC
*
36555836 TGTAAAATTATCAAAATACCCTTATAG
1 TGTAAAATTACCAAAATACCCTTATAG
* * *
36555863 TGTAAAATTACCGAAATACCTTTGTAG
1 TGTAAAATTACCAAAATACCCTTATAG
*
36555890 GGTAAAAT
1 TGTAAAAT
36555898 GACTGTTTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCTTATAG
Found at i:36560430 original size:43 final size:42
Alignment explanation
Indices: 36560315--36560431 Score: 105
Period size: 43 Copynumber: 2.8 Consensus size: 42
36560305 TTTTTGAGAT
* * * * * *
36560315 TTACGTGTAAGACCA-TTTTGGGACATCGGCATCGTATTTGA
1 TTACATGTAAGACCACGTCTGGGACGTTGGCATCGTACTTGA
* * *
36560356 TTTCATGTAAGACC-CTGTCTGAGATAG-TGGCATCGATACTTGA
1 TTACATGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TACTTGA
36560399 TTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TTACATGTAAGACCACGTCTGGGACGTTGGCAT
36560432 TGTATGAGCT
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
41 12 0.21
42 13 0.22
43 32 0.55
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACGTTGGCATCGTACTTGA
Found at i:36564572 original size:54 final size:55
Alignment explanation
Indices: 36564419--36564572 Score: 166
Period size: 55 Copynumber: 2.8 Consensus size: 55
36564409 ATGCCTTATG
* * * * * *
36564419 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCAT
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCATATCAA
** * * * * * *
36564474 AGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCATGT-AA
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCATATCAA
*
36564528 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
36564573 AAACCCTAAT
Statistics
Matches: 77, Mismatches: 22, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
54 38 0.49
55 39 0.51
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (55 bp):
AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCATATCAA
Found at i:36571603 original size:40 final size:40
Alignment explanation
Indices: 36571544--36571733 Score: 305
Period size: 40 Copynumber: 4.8 Consensus size: 40
36571534 CATTTGAATG
* * *
36571544 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
36571584 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
36571624 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
36571662 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
36571702 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
36571734 TTGTGGTTAT
Statistics
Matches: 141, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
38 38 0.27
40 101 0.72
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:36571692 original size:78 final size:78
Alignment explanation
Indices: 36571544--36571733 Score: 310
Period size: 78 Copynumber: 2.4 Consensus size: 78
36571534 CATTTGAATG
* * *
36571544 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGA--TTATCCGGGCTAAGACCCGAAGGCA
*
36571609 TTTGTGCGAGTTGCT
64 TTTGTGCGAGTTGAT
36571624 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATCCGGGCTAAGACCCGAAGGCAT
36571688 TTGTGCGAGTTGAT
65 TTGTGCGAGTTGAT
36571702 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
36571734 TTGTGGTTAT
Statistics
Matches: 105, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
78 70 0.67
80 32 0.30
81 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (78 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGTTGAT
Found at i:36579764 original size:39 final size:40
Alignment explanation
Indices: 36579602--36579772 Score: 220
Period size: 40 Copynumber: 4.3 Consensus size: 40
36579592 CATTTGAATG
* * * *
36579602 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
* * * *
36579642 TTATCCGGGCCAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
* *
36579682 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
**
36579722 ATATCCGGGCTAAGACCCG-AGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
36579761 ATATCC-GGCTAA
1 ATATCCGGGCTAA
36579773 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 6 0.05
39 22 0.19
40 88 0.76
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
Found at i:36583209 original size:53 final size:54
Alignment explanation
Indices: 36583108--36583311 Score: 187
Period size: 53 Copynumber: 3.8 Consensus size: 54
36583098 TTCCTTTTTA
* * * ** **
36583108 AACTTACCATTTCCATGTCTTGACATGGTCTTATGTGGTATCCATGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* * * *
36583161 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
** * * * * * *
36583215 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTT-CCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAT-CTTTGCCTTATAG
* *
36583270 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
36583312 CTTAAACCCT
Statistics
Matches: 120, Mismatches: 28, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
53 45 0.38
54 34 0.28
55 37 0.31
56 4 0.03
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
Found at i:36592388 original size:27 final size:26
Alignment explanation
Indices: 36592358--36592446 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 26
36592348 GGAATTTCAG
*
36592358 TCATTTTACCACATAAGGGTAAAATAA
1 TCATTTTACCACATAAGGG-AAAACAA
* *
36592385 TCATTTTACTACATAAGGGCAAAACAG
1 TCATTTTACCACATAAGGG-AAAACAA
*
36592412 TCATTTTACCACATAAGGGAAAAGCAG
1 TCATTTTACCACATAAGGGAAAA-CAA
36592439 TCATTTTA
1 TCATTTTA
36592447 TTGATTAGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 4 0.07
27 52 0.93
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (26 bp):
TCATTTTACCACATAAGGGAAAACAA
Found at i:36594501 original size:27 final size:27
Alignment explanation
Indices: 36594471--36594571 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
36594461 TACTGAAATG
* *
36594471 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
36594498 CCCTCGATTTATAGAATTACTGTTTCA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
36594525 CCCTCGATTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
36594552 CCCTCGATTTAAAAAATTAC
1 CCCTCGATTTATAGAATTAC
36594572 TAAAATACCC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:36594596 original size:27 final size:27
Alignment explanation
Indices: 36594574--36594922 Score: 457
Period size: 27 Copynumber: 13.0 Consensus size: 27
36594564 AAAATTACTA
* *
36594574 AAATACCCCTATAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
36594601 AAATACCCTTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
36594628 AAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
36594655 AAATACCCTTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
36594682 AAATACTCATGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
36594709 AAATACCCCTACAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
36594736 AAATACCCCTGTAAGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
36594763 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
36594790 GAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
36594817 TAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
36594844 AAATACCTCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
36594871 AAATACCCTTGTATGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
36594898 AGATA-CCTTGTAGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
36594923 ATTTTGCCCC
Statistics
Matches: 283, Mismatches: 39, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
26 17 0.06
27 266 0.94
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:36595401 original size:22 final size:22
Alignment explanation
Indices: 36595349--36595413 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
36595339 TTAAATCCTT
* *
36595349 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTGTGTGCCAAC
*
36595371 CT-ACATATGGCTGTGTGCCAAC
1 CTGA-TTATGGCTGTGTGCCAAC
*
36595393 CTGATTATGGCTGTTTGCCAA
1 CTGATTATGGCTGTGTGCCAA
36595414 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTGTGTGCCAAC
Found at i:36595602 original size:27 final size:27
Alignment explanation
Indices: 36595572--36595673 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
36595562 ATTCTGTTAA
* * *
36595572 GTGGCTTTGCCATATTATCTGTTTCTG
1 GTGGCTATGCCAAAATATCTGTTTCTG
36595599 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCA-AAATATCTGTTTCTG
* * *
36595626 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCAAAATATCTGTTTCTG
* * * *
36595653 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCAAAATATCTG
36595674 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCAAAATATCTGTTTCTG
Found at i:36595630 original size:54 final size:53
Alignment explanation
Indices: 36595572--36595673 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
36595562 ATTCTGTTAA
* * * * *
36595572 GTGGCTTTGCCATATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCAC-AATATCTGTTCTG
* *
36595626 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTG
36595674 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 8 0.20
54 33 0.80
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:36595856 original size:31 final size:31
Alignment explanation
Indices: 36595810--36595919 Score: 139
Period size: 31 Copynumber: 3.5 Consensus size: 31
36595800 TTGCATTCAC
* *
36595810 ATTCTGATTTTTGATTTTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* *
36595842 GTTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * *
36595873 ATTTTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
36595904 ATTCTGATTCTGATTC
1 ATTCTGATTCTGATTC
36595920 CAGTTCTGAT
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
31 63 0.91
32 6 0.09
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:36595880 original size:6 final size:6
Alignment explanation
Indices: 36595864--36595919 Score: 51
Period size: 6 Copynumber: 9.2 Consensus size: 6
36595854 ATTCTGTTAC
* * * *
36595864 CTGATA CTGATT TTGATT CTGATT CTG-TCAC CTAATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
36595913 CTGATT C
1 CTGATT C
36595920 CAGTTCTGAT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
5 1 0.03
6 36 0.90
7 2 0.05
8 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:36606915 original size:28 final size:29
Alignment explanation
Indices: 36606865--36606919 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
36606855 ATACTGTATT
* *
36606865 GGGCTTAGGCCCACATTGCTACTGTTAAA
1 GGGCTAAGGCCCACACTGCTACTGTTAAA
*
36606894 GGGCTAAGGCCCAGACTG-TACTGTTA
1 GGGCTAAGGCCCACACTGCTACTGTTA
36606920 CTGAATAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (29 bp):
GGGCTAAGGCCCACACTGCTACTGTTAAA
Found at i:36614934 original size:21 final size:22
Alignment explanation
Indices: 36614892--36614937 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
36614882 TTGAGATTGA
*
36614892 AATTCAATCTGATATGACTTATG
1 AATTCAATCTCATA-GACTTATG
36614915 AATTCAATCTCATA-ACTTATG
1 AATTCAATCTCATAGACTTATG
36614936 AA
1 AA
36614938 GAACTGCGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.41
23 13 0.59
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (22 bp):
AATTCAATCTCATAGACTTATG
Found at i:36615304 original size:20 final size:21
Alignment explanation
Indices: 36615279--36615321 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
36615269 TCGCGTAAAA
36615279 TGTTAAAGTAGCCT-TTTG-TT
1 TGTTAAAGTA-CCTATTTGATT
36615299 TGTTAAAGTACCTATTTGATT
1 TGTTAAAGTACCTATTTGATT
36615320 TG
1 TG
36615322 GCTTTCGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.14
20 14 0.67
21 4 0.19
ACGTcount: A:0.23, C:0.09, G:0.19, T:0.49
Consensus pattern (21 bp):
TGTTAAAGTACCTATTTGATT
Found at i:36615535 original size:28 final size:28
Alignment explanation
Indices: 36615495--36615549 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
36615485 CCATTTTGTG
36615495 TTCATCCACAACCAAAAATACAAATTAT
1 TTCATCCACAACCAAAAATACAAATTAT
36615523 TTCATCCACAACCAAAAATACAAATTA
1 TTCATCCACAACCAAAAATACAAATTA
36615550 AAAGAAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.24
Consensus pattern (28 bp):
TTCATCCACAACCAAAAATACAAATTAT
Found at i:36620078 original size:13 final size:13
Alignment explanation
Indices: 36620046--36620087 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
36620036 CTATACGGGT
36620046 TAATAA-ATAAAA
1 TAATAATATAAAA
36620058 TAATAATA-AAAA
1 TAATAATATAAAA
36620070 TATATAATATAAAA
1 TA-ATAATATAAAA
36620084 -AATA
1 TAATA
36620088 GGCTATAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 15 0.56
13 8 0.30
14 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
TAATAATATAAAA
Found at i:36620496 original size:65 final size:65
Alignment explanation
Indices: 36620392--36620522 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
36620382 CCCCTAGGGT
* *
36620392 TAAGGTTGATCTGAATGCTTGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
*
36620457 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGTCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
36620522 T
1 T
36620523 GCATAGGACT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.44
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:36622954 original size:26 final size:25
Alignment explanation
Indices: 36622906--36622955 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
36622896 TTATAATATG
* * *
36622906 AAAAATGACTATTTTGCCCCTAGGT
1 AAAAATGACCATTATACCCCTAGGT
36622931 AAAAATGACCATTATACCCTCTAGG
1 AAAAATGACCATTATACCC-CTAGG
36622956 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:36623048 original size:21 final size:22
Alignment explanation
Indices: 36622992--36623049 Score: 77
Period size: 21 Copynumber: 2.7 Consensus size: 22
36622982 ATATTGTTAT
36622992 ACATGATATGAC-ATG-GTATGC
1 ACATGATATG-CTATGAGTATGC
*
36623013 ACATGATATGTTATGAG-ATGC
1 ACATGATATGCTATGAGTATGC
36623034 ACATGATATGCTATGA
1 ACATGATATGCTATGA
36623050 TATACTCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (22 bp):
ACATGATATGCTATGAGTATGC
Found at i:36624363 original size:21 final size:21
Alignment explanation
Indices: 36624334--36624384 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
36624324 ACGAGTTATT
* *
36624334 CACACGGGCGTGTGTCCCCTC
1 CACATGGGCGTGTGTACCCTC
* *
36624355 CACATGGGCGTGTGTAGCCTT
1 CACATGGGCGTGTGTACCCTC
36624376 CACATGGGC
1 CACATGGGC
36624385 ATATGGGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.14, C:0.33, G:0.31, T:0.22
Consensus pattern (21 bp):
CACATGGGCGTGTGTACCCTC
Found at i:36624935 original size:38 final size:37
Alignment explanation
Indices: 36624849--36624944 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 37
36624839 TTAGTTCCAC
* *
36624849 CATATGTGGTGTGTAGGGTGGACGGGCCTAGCATGGT
1 CATATGTGGTGTGCAGGGTGGACGGGCCTAGCATGCT
* * * * *
36624886 CTTATGTGGTGTGGAGGGTGGATGGGCTTATTGTA-GCT
1 CATATGTGGTGTGCAGGGTGGACGGGCCTA--GCATGCT
*
36624924 CATATGTGGTGTACAGGGTGG
1 CATATGTGGTGTGCAGGGTGG
36624945 TCGAAGTGGT
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
37 26 0.54
38 20 0.42
39 2 0.04
ACGTcount: A:0.16, C:0.10, G:0.43, T:0.31
Consensus pattern (37 bp):
CATATGTGGTGTGCAGGGTGGACGGGCCTAGCATGCT
Found at i:36628404 original size:43 final size:42
Alignment explanation
Indices: 36628346--36628462 Score: 141
Period size: 41 Copynumber: 2.8 Consensus size: 42
36628336 CAATACTAAC
*
36628346 GTCCCAGACATGGTCTTACATGTAATCACATATCGATGCC-ACT
1 GTCCCTGACATGGTCTTACATGTAATCACATAT-GATGCCGA-T
* *
36628389 GTCCCTGACAGGGTCTTACATG-AATCAAATATGATGCCGAT
1 GTCCCTGACATGGTCTTACATGTAATCACATATGATGCCGAT
* *
36628430 GT-CCTAGACATGGTCTTACACGTAACCACATAT
1 GTCCCT-GACATGGTCTTACATGTAATCACATAT
36628463 ATCGTTGCCA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
40 3 0.05
41 23 0.36
42 18 0.28
43 20 0.31
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (42 bp):
GTCCCTGACATGGTCTTACATGTAATCACATATGATGCCGAT
Found at i:36628445 original size:41 final size:43
Alignment explanation
Indices: 36628346--36628494 Score: 137
Period size: 41 Copynumber: 3.5 Consensus size: 43
36628336 CAATACTAAC
* *
36628346 GTCCCAGACATGGTCTTACATGTAATCACATATCGATGCCACT
1 GTCCTAGACATGGTCTTACATGTAATCAAATATCGATGCCACT
*
36628389 GTCCCT-GACAGGGTCTTACATG-AATCAAATAT-GATGCCGA-T
1 GT-CCTAGACATGGTCTTACATGTAATCAAATATCGATGCC-ACT
* * *
36628430 GTCCTAGACATGGTCTTACACGTAACCACATATATCGTTGCCAACT
1 GTCCTAGACATGGTCTTACATGTAATCA-A-ATATCGATGCC-ACT
* **
36628476 -TCCCAGATGTGGTCTTACA
1 GTCCTAGACATGGTCTTACA
36628495 CGAGAACACA
Statistics
Matches: 87, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
40 3 0.03
41 23 0.26
42 14 0.16
43 18 0.21
44 6 0.07
45 22 0.25
46 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
GTCCTAGACATGGTCTTACATGTAATCAAATATCGATGCCACT
Found at i:36638331 original size:23 final size:25
Alignment explanation
Indices: 36638298--36638349 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 25
36638288 GCCATAGAAC
* *
36638298 AGGATGTTCAAG-TGAGCC-ATATT
1 AGGATGCTCAAGAAGAGCCTATATT
36638321 AGGATGCTCAAGAAGAGCCTATATT
1 AGGATGCTCAAGAAGAGCCTATATT
36638346 AGGA
1 AGGA
36638350 CACTCATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 11 0.44
24 5 0.20
25 9 0.36
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (25 bp):
AGGATGCTCAAGAAGAGCCTATATT
Found at i:36644478 original size:51 final size:51
Alignment explanation
Indices: 36644357--36644490 Score: 168
Period size: 51 Copynumber: 2.6 Consensus size: 51
36644347 ACGTCACTAG
*
36644357 TGACT-CAAGTGTGGTACTATGTGAAGGCCGCTTTGTGCAAAAAGATAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGT-CAAAAAGATAGCTT
* *
36644408 TG-GTCACAAGTGTGGTACTATGTGAAGGCCACTTTGT-AAAGAAGGTAGCTT
1 TGACT-ACAAGTGTGGTACTATGTGAAGGCCACTTTGTCAAA-AAGATAGCTT
*
36644459 TGACTACAAGGGTGGTACTATGT-ACAGGCCAC
1 TGACTACAAGTGTGGTACTATGTGA-AGGCCAC
36644491 CAGGTATCAG
Statistics
Matches: 73, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
50 5 0.07
51 37 0.51
52 31 0.42
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (51 bp):
TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTCAAAAAGATAGCTT
Found at i:36647669 original size:17 final size:17
Alignment explanation
Indices: 36647647--36647683 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
36647637 ATACACACAT
36647647 ACACATATGAGATTTTC
1 ACACATATGAGATTTTC
36647664 ACACATATGAGATTTTC
1 ACACATATGAGATTTTC
36647681 ACA
1 ACA
36647684 TATACTTCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (17 bp):
ACACATATGAGATTTTC
Found at i:36647956 original size:39 final size:40
Alignment explanation
Indices: 36647886--36648064 Score: 258
Period size: 39 Copynumber: 4.5 Consensus size: 40
36647876 ACAAAGCATG
* * *
36647886 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTA
1 CGGGACTTT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
36647926 CGGGACTTTAGCCCGAATATAACACTAGCACGAATGCCTT
1 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
36647966 CGGG-GTTTGGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
36648005 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
36648044 CGGGAC-TTAGCCCGGATATAA
1 CGGGACTTTAGCCCGGATATAA
36648065 TTCTCCATTA
Statistics
Matches: 126, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 107 0.85
40 19 0.15
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (40 bp):
CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:36654552 original size:39 final size:39
Alignment explanation
Indices: 36654482--36654738 Score: 365
Period size: 39 Copynumber: 6.5 Consensus size: 39
36654472 ACAAAGCATG
* * *
36654482 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
36654522 CGGGACTTTAGCCCGGATATAACACTAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
36654562 CGGGGA-TTAGCCCGGATATAACACCAGCACGAATGCCTT
1 C-GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
36654601 CGGGACTTAGCCCGGATATAACACTAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
36654640 CGGGACTTAGCCCGGATATAACACCAACACGAATGCCTA
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * **
36654679 CGGGACTTAGCCCAGCTATAACAGTAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
36654718 CGGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
36654739 TTCTCCATTA
Statistics
Matches: 197, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 4 0.02
39 173 0.88
40 16 0.08
41 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:36658991 original size:27 final size:26
Alignment explanation
Indices: 36658935--36658991 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
36658925 CAACCTTAAC
* * *
36658935 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
36658961 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
36658988 CCTA
1 CCTA
36658992 TAAATGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:36659266 original size:13 final size:13
Alignment explanation
Indices: 36659238--36659280 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
36659228 ACTTATTTCC
*
36659238 TATTTTTTTATAT
1 TATTATTTTATAT
36659251 TATATATTTT-TAT
1 TAT-TATTTTATAT
36659264 TATTATTTTAT-T
1 TATTATTTTATAT
36659276 TATTA
1 TATTA
36659281 ACCCGTATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 12 0.44
13 10 0.37
14 5 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTATTTTATAT
Found at i:36659277 original size:15 final size:14
Alignment explanation
Indices: 36659238--36659280 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
36659228 ACTTATTTCC
36659238 TATTTTTTTA-TAT
1 TATTTTTTTATTAT
36659251 TATATATTTTTATTAT
1 TAT-T-TTTTTATTAT
36659267 TATTTTATTTATTA
1 TATTTT-TTTATTA
36659281 ACCCGTATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.12
14 3 0.12
15 14 0.54
16 6 0.23
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TATTTTTTTATTAT
Found at i:36661364 original size:28 final size:28
Alignment explanation
Indices: 36661301--36661454 Score: 238
Period size: 28 Copynumber: 5.5 Consensus size: 28
36661291 TATATAAGTC
*
36661301 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
36661328 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
36661356 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
36661384 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
36661412 CGCACACTTAGTTCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
36661441 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36661455 CAATCTCATG
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 78 0.66
29 18 0.15
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36661921 original size:12 final size:12
Alignment explanation
Indices: 36661904--36661929 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36661894 TGGGCATACT
36661904 TATGTATATATA
1 TATGTATATATA
36661916 TATGTATATATA
1 TATGTATATATA
36661928 TA
1 TA
36661930 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:36669350 original size:28 final size:28
Alignment explanation
Indices: 36669333--36669486 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
36669323 TATATAAGTC
*
36669333 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
36669360 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
36669388 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
36669416 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
36669444 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
36669473 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36669487 CAATCTCATG
Statistics
Matches: 120, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 22 0.18
28 79 0.66
29 19 0.16
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36672945 original size:34 final size:35
Alignment explanation
Indices: 36672874--36672945 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
36672864 CGTATCCTAG
*
36672874 CTACAGTCTCAGTCTTCCAAAGTTTTCAGTTTTCC
1 CTACAGTCTCAGTCTTCCAAAGTTTTCAGTTTACC
* * *
36672909 CTACTGTCTCAGT-TTCTACAGTTTT-AGTATTACC
1 CTACAGTCTCAGTCTTCCAAAGTTTTCAGT-TTACC
36672943 CTA
1 CTA
36672946 ACTATAGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 3 0.09
34 17 0.53
35 12 0.38
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCCAAAGTTTTCAGTTTACC
Found at i:36674419 original size:65 final size:65
Alignment explanation
Indices: 36674311--36674441 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
36674301 AGTCTCATGC
* *
36674311 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAAATAATAATAACATGGAATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
36674376 ATCAAATAATAATAACATGGAATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAAATAATAATAACATGGAATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
36674441 A
1 A
36674442 ACCCTAGGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.24
Consensus pattern (65 bp):
ATCAAATAATAATAACATGGAATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:36676638 original size:40 final size:40
Alignment explanation
Indices: 36676533--36676747 Score: 298
Period size: 39 Copynumber: 5.5 Consensus size: 40
36676523 CGGATGATAA
* *
36676533 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
36676573 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36676612 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36676652 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36676691 CCGGGCTAAGT-CCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
36676730 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36676748 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
38 18 0.11
39 85 0.52
40 60 0.37
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36676677 original size:79 final size:79
Alignment explanation
Indices: 36676529--36676714 Score: 297
Period size: 79 Copynumber: 2.4 Consensus size: 79
36676519 TATTCGGATG
* *
36676529 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
36676594 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
* *
36676608 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
36676672 A-TTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
36676687 ATAACCGGGCTAAGT-CCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
36676715 AGCAAGTAGC
Statistics
Matches: 100, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
78 15 0.15
79 75 0.75
80 10 0.10
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:36676728 original size:39 final size:40
Alignment explanation
Indices: 36676529--36676714 Score: 299
Period size: 39 Copynumber: 4.7 Consensus size: 40
36676519 TATTCGGATG
* *
36676529 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36676569 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36676608 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
36676648 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
36676687 ATAACCGGGCTAAGT-CCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
36676715 AGCAAGTAGC
Statistics
Matches: 138, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
38 9 0.07
39 68 0.49
40 61 0.44
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:36684724 original size:40 final size:40
Alignment explanation
Indices: 36684642--36684861 Score: 252
Period size: 40 Copynumber: 5.5 Consensus size: 40
36684632 ACCCAAGTAT
* * * *
36684642 CTTCGGGAT-TTAG-CCAGATATAGCCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
36684680 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
36684720 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
36684760 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* ** *
36684800 CTTCGGATCTTAATCCGGATATAGTCACTAGCATTAAA-GC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCA-CAAATGC
*
36684840 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
36684862 CATTCTAATA
Statistics
Matches: 154, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.10
40 122 0.79
41 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:36692733 original size:40 final size:40
Alignment explanation
Indices: 36692651--36692869 Score: 234
Period size: 40 Copynumber: 5.5 Consensus size: 40
36692641 ACCCAAGTAT
* *
36692651 CTTCGGGAT-TTAG-CCGGATATAGCCACTCGCAC-AA-GC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
36692688 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* **
36692728 CTTCGGGACTTAGCCCGGATATAGTCGTTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
36692768 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
36692808 CTTCGGATCTTAGTCCAGATATAGTCACTAGCATTAAA-GC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCA-CAAATGC
* * *
36692848 CTTGGGGACCTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
36692870 CATTCGAATA
Statistics
Matches: 151, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
36 1 0.01
37 11 0.07
38 16 0.11
39 3 0.02
40 116 0.77
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:36695993 original size:40 final size:40
Alignment explanation
Indices: 36695792--36695979 Score: 272
Period size: 40 Copynumber: 4.7 Consensus size: 40
36695782 TATTCGGATG
* * *
36695792 ATAACCGGGCTAAGTCCCGAAGTCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
36695832 A-ATTCCGGGCTAAG-CCCGAAGGAATTTGTGCGAGTTATT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
36695871 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36695911 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
36695951 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
36695980 AGCAAGTAGC
Statistics
Matches: 132, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 33 0.25
40 99 0.75
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:36695993 original size:80 final size:80
Alignment explanation
Indices: 36695792--36696018 Score: 275
Period size: 79 Copynumber: 2.9 Consensus size: 80
36695782 TATTCGGATG
* *
36695792 ATAACCGGGCTAAGTCCCGAAGTCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAG-CCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGG
* *
36695854 AATTTGTGCGAGTTATT
64 AACTTGTGCGAGTTACT
* ** * *
36695871 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAGTCCCGAAGGA
36695935 ACTTGTGCGAGTTACT
65 ACTTGTGCGAGTTACT
* * * *
36695951 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCC-GGCTAAATTCCGAAGGTA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGGAA
36696015 CTTG
66 CTTG
36696019 GTTTGGGAAT
Statistics
Matches: 127, Mismatches: 16, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
79 65 0.51
80 62 0.49
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGGAA
CTTGTGCGAGTTACT
Found at i:36696010 original size:119 final size:119
Alignment explanation
Indices: 36695792--36696012 Score: 295
Period size: 119 Copynumber: 1.9 Consensus size: 119
36695782 TATTCGGATG
* * * *
36695792 ATAACCGGGCTAAGTCCCGAAGTCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGAAT
1 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGAAT
* * * *
36695857 TTGTGCGAGTTATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
66 TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGTGAGTTACT
* *
36695911 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGA
*
36695975 ATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
64 ATTTGAGCAAGTTA-CTATATCCGGGCTAAATCCCGAAGG
36696013 TACTTGGTTT
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
118 2 0.02
119 62 0.70
120 24 0.27
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGAAT
TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGTGAGTTACT
Found at i:36698864 original size:42 final size:42
Alignment explanation
Indices: 36698806--36698915 Score: 114
Period size: 44 Copynumber: 2.6 Consensus size: 42
36698796 TCGATGCCTC
* * *
36698806 TGTCCCTGACAGGGTCTTACACGAAA-TCAAATACAATGCCGA
1 TGTCCCAGACACGGTCTTACACGAAACTCAAAT-CAAGGCCGA
* * * *
36698848 TGTCCCAGACATGGTCTTACATGTAAATCTCAAATCGAGGCCTA
1 TGTCCCAGACACGGTCTTACACG-AAA-CTCAAATCAAGGCCGA
*
36698892 TGTTCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
36698916 TATCTCCGAT
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 20 0.36
43 4 0.07
44 26 0.46
45 6 0.11
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAACTCAAATCAAGGCCGA
Found at i:36698908 original size:44 final size:43
Alignment explanation
Indices: 36698764--36698912 Score: 142
Period size: 42 Copynumber: 3.5 Consensus size: 43
36698754 CAACACCGAC
** * *
36698764 GTCCCAGACGTGGTCTTACATGT-AATTCAGTATCGATGCCTCT
1 GTCCCAGACACGGTCTTACATGTAAATTCA-AATCGATGCCTAT
* * * * *
36698807 GTCCCTGACAGGGTCTTACACG-AAA-TCAAATACAATGCCGAT
1 GTCCCAGACACGGTCTTACATGTAAATTCAAAT-CGATGCCTAT
* *
36698849 GTCCCAGACATGGTCTTACATGTAAATCTCAAATCGAGGCCTAT
1 GTCCCAGACACGGTCTTACATGTAAAT-TCAAATCGATGCCTAT
*
36698893 GTTCCAGACACGGTCTTACA
1 GTCCCAGACACGGTCTTACA
36698913 CGATATCTCC
Statistics
Matches: 85, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 2 0.02
42 29 0.34
43 23 0.27
44 25 0.29
45 6 0.07
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (43 bp):
GTCCCAGACACGGTCTTACATGTAAATTCAAATCGATGCCTAT
Found at i:36707134 original size:27 final size:28
Alignment explanation
Indices: 36707093--36707196 Score: 115
Period size: 27 Copynumber: 3.8 Consensus size: 28
36707083 GGAAGCGTTT
*
36707093 TGGTGGCTGTGCCACAAATATCTA-ATC
1 TGGTGGCTCTGCCACAAATATCTATATC
* * *
36707120 TGGTGGCTTTACCACAAATATCTATTTC
1 TGGTGGCTCTGCCACAAATATCTATATC
*
36707148 TGGTGGCTCTGCCAC-AATATCTGTATC
1 TGGTGGCTCTGCCACAAATATCTATATC
* * *
36707175 TAGTGACTCTGTCAC-AATATCT
1 TGGTGGCTCTGCCACAAATATCT
36707197 GTTCTGGCAG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
27 51 0.77
28 15 0.23
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAAATATCTATATC
Found at i:36714135 original size:31 final size:31
Alignment explanation
Indices: 36714098--36714168 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
36714088 TTACTGCGCT
*
36714098 GAAGCCTTTTCATAAATCATATCACTGGGCC
1 GAAGCCTTTTAATAAATCATATCACTGGGCC
* *
36714129 GAAGCCTTTTAATAAATCATATCATTGGGCT
1 GAAGCCTTTTAATAAATCATATCACTGGGCC
36714160 GAAGCCTTT
1 GAAGCCTTT
36714169 ACTGTAAACG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (31 bp):
GAAGCCTTTTAATAAATCATATCACTGGGCC
Found at i:36714458 original size:26 final size:26
Alignment explanation
Indices: 36714374--36714561 Score: 211
Period size: 26 Copynumber: 7.3 Consensus size: 26
36714364 CTGGAGGCCT
* *
36714374 AGCCTTTTTTAAT-AACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*** *
36714398 AGCCCTTTTTGGTAAACTAGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
36714423 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* ** *
36714449 AGCCTTTTTCGGTAAACTGAGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
36714475 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
36714501 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* * *
36714527 AGCCTTTTTCAATAAACTAGGGTATA
1 AGCCCTTTTCAATAAACTGGGGCATA
36714553 AGCCCTTTT
1 AGCCCTTTT
36714562 GCACTTCCTC
Statistics
Matches: 136, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
24 10 0.07
25 30 0.22
26 96 0.71
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:36714490 original size:52 final size:52
Alignment explanation
Indices: 36714374--36714561 Score: 258
Period size: 52 Copynumber: 3.7 Consensus size: 52
36714364 CTGGAGGCCT
* * * *
36714374 AGCCTTTTTTAAT-AACTGGGGCA-AAGCCCTTTTTGGTAAACT-AGGGCA-A
1 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGA-GGCATA
* *
36714423 AGCCCTTTTCAATAAACTGGGGCATAAGCCTTTTTCGGTAAACTGAGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGAGGCATA
*
36714475 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGAGGCATA
* *
36714527 AGCCTTTTTCAATAAACTAGGGTATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTT
36714562 GCACTTCCTC
Statistics
Matches: 126, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
49 11 0.09
50 10 0.08
51 21 0.17
52 84 0.67
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (52 bp):
AGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGAGGCATA
Found at i:36714523 original size:78 final size:77
Alignment explanation
Indices: 36714374--36714561 Score: 247
Period size: 78 Copynumber: 2.5 Consensus size: 77
36714364 CTGGAGGCCT
* * ***
36714374 AGCCTTTTTTAAT-AACTGGGGCA-AAGCCCTTTTTGGTAAACTAGGGCAAAGCCCTTTTCAATA
1 AGCCTTTTTCAATAAACTGAGGCATAAGCCCTTTTCAATAAACTAGGGCAAAGCCCTTTTCAATA
36714437 AACTGGGGCATA
66 AACTGGGGCATA
** **
36714449 AGCCTTTTTCGGTAAACTGAGGCATAAGCCCTTTTCAATAAACTAGGGCATAAGCCCTTTTCGGT
1 AGCCTTTTTCAATAAACTGAGGCATAAGCCCTTTTCAATAAACTAGGGCA-AAGCCCTTTTCAAT
36714514 AAACTGGGGCATA
65 AAACTGGGGCATA
*
36714527 AGCCTTTTTCAATAAACT-AGGGTATAAGCCCTTTT
1 AGCCTTTTTCAATAAACTGA-GGCATAAGCCCTTTT
36714562 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
75 10 0.10
76 9 0.09
77 23 0.24
78 55 0.57
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (77 bp):
AGCCTTTTTCAATAAACTGAGGCATAAGCCCTTTTCAATAAACTAGGGCAAAGCCCTTTTCAATA
AACTGGGGCATA
Found at i:36715460 original size:27 final size:27
Alignment explanation
Indices: 36715365--36715451 Score: 131
Period size: 27 Copynumber: 3.2 Consensus size: 27
36715355 TATTCGTCAT
* *
36715365 TTTACCATACAGGGG-TATTACGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCTC
36715392 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTACGGTCTC
*
36715419 TTTACCCTACAGGGGCTTTACGGTCTT
1 TTTACCCTACAGGGGCTTTACGGTCTC
36715446 TTTACC
1 TTTACC
36715452 TAATAGGGGT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.34
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCTC
Found at i:36715535 original size:27 final size:27
Alignment explanation
Indices: 36715505--36715602 Score: 92
Period size: 27 Copynumber: 3.6 Consensus size: 27
36715495 GTAAATCTAC
36715505 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
36715532 AAACCAATGGTATTTCCA-TAATTTT-T
1 AAACCAAGGGTATTT-CAGTAATTTTGT
* * * *
36715558 AGAAAGTCAAGGGCATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
*
36715588 AAATCAAGGGTATTT
1 AAACCAAGGGTATTT
36715603 TTGTGACAGC
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
26 1 0.02
27 32 0.55
28 9 0.16
29 15 0.26
30 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:36717279 original size:29 final size:29
Alignment explanation
Indices: 36717246--36717319 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
36717236 GTTGTGAGAT
* *
36717246 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
36717275 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
36717304 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36717320 TGGTTGATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:36718933 original size:27 final size:27
Alignment explanation
Indices: 36718895--36719125 Score: 261
Period size: 27 Copynumber: 8.6 Consensus size: 27
36718885 GGGTGTTACA
**
36718895 ATTTTGGTAATTTTACAAATTGAGGGT
1 ATTTTGGTAATTTTACAAACCGAGGGT
* *
36718922 ATTTCGGTAATTTCACAAACC-AGTGGT
1 ATTTTGGTAATTTTACAAACCGAG-GGT
*
36718949 ATTTTGGTAATTTTACAAA-CTAGGGGT
1 ATTTTGGTAATTTTACAAACCGA-GGGT
*
36718976 ATTTTGGTAATTTTACAAA-CTAGGGGT
1 ATTTTGGTAATTTTACAAACCGA-GGGT
*
36719003 ATTTTGGTAATTTTACAAACCAAGGGT
1 ATTTTGGTAATTTTACAAACCGAGGGT
** * *
36719030 ATTTTGGTAATTTTACTGATCGTGGGT
1 ATTTTGGTAATTTTACAAACCGAGGGT
* *
36719057 ATTTTGGTAATTTTACTAATCGAGGGT
1 ATTTTGGTAATTTTACAAACCGAGGGT
** *
36719084 ATTTTGGTAATTTTGTAAACCAAGGGT
1 ATTTTGGTAATTTTACAAACCGAGGGT
*
36719111 ATTTTAGTAATTTTA
1 ATTTTGGTAATTTTA
36719126 TAAATCAAGG
Statistics
Matches: 179, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.02
27 173 0.97
28 3 0.02
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
ATTTTGGTAATTTTACAAACCGAGGGT
Done.