Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 111 of 311
Found at i:36719031 original size:81 final size:81
Alignment explanation
Indices: 36718895--36719130 Score: 316
Period size: 81 Copynumber: 2.9 Consensus size: 81
36718885 GGGTGTTACA
* * *
36718895 ATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATTTTGGTAA
1 ATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTTACAAACCAAG-GGTATTTTGGTAA
36718959 TTTTACAAACTAG-GGGT
65 TTTTACAAA-TAGTGGGT
36718976 ATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAA
1 ATTTTGGTAATTTTACAAA-TAGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAA
** *
36719040 TTTTACTGATCGTGGGT
65 TTTTACAAATAGTGGGT
* * ** *
36719057 ATTTTGGTAATTTTACTAATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAAT
1 ATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAAT
*
36719122 TTTATAAAT
66 TTTACAAAT
36719131 CAAGGGTAAA
Statistics
Matches: 137, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
80 4 0.03
81 129 0.94
82 4 0.03
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
ATTTTGGTAATTTTACAAATAGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAAT
TTTACAAATAGTGGGT
Found at i:36719227 original size:27 final size:27
Alignment explanation
Indices: 36718895--36719258 Score: 252
Period size: 27 Copynumber: 13.5 Consensus size: 27
36718885 GGGTGTTACA
* *
36718895 ATTTTGGTAATTTTACAAATTGAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
* * * *
36718922 ATTTCGGTAATTTCACAAA-CCAGTGGT
1 ATTTTGGTAATTTTATAAATCGAG-GGT
* *
36718949 ATTTTGGTAATTTTACAAA-CTAGGGGT
1 ATTTTGGTAATTTTATAAATCGA-GGGT
* *
36718976 ATTTTGGTAATTTTACAAA-CTAGGGGT
1 ATTTTGGTAATTTTATAAATCGA-GGGT
* * *
36719003 ATTTTGGTAATTTTACAAACCAAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
* *
36719030 ATTTTGGTAATTTTACT-GATCGTGGGT
1 ATTTTGGTAATTTTA-TAAATCGAGGGT
36719057 ATTTTGGTAATTTTACT-AATCGAGGGT
1 ATTTTGGTAATTTTA-TAAATCGAGGGT
* * *
36719084 ATTTTGGTAATTTTGTAAACCAAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
* *
36719111 ATTTTAGTAATTTTATAAATCAAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
*** * * * *
36719138 AAAATAGTAATTCTGTAAATCAAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
***** *
36719165 AAAACAGTAATTCTATAAATCGAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
**** *
36719192 AAAACGGTAATTCTATAAATCGAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
* * * *
36719219 ACTTTGGTAATTTTACAATTTGAGGGT
1 ATTTTGGTAATTTTATAAATCGAGGGT
**
36719246 ATTTCAGTAATTT
1 ATTTTGGTAATTT
36719259 AGTAAACTAA
Statistics
Matches: 291, Mismatches: 41, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.01
27 285 0.98
28 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
ATTTTGGTAATTTTATAAATCGAGGGT
Found at i:36725522 original size:65 final size:65
Alignment explanation
Indices: 36725414--36725544 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
36725404 CCCCTAGGGT
* *
36725414 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTTTTTGCTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
*
36725479 TAAGGTTGACCTGAATGCATGTTTGGCTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
36725544 T
1 T
36725545 GCATGGGACT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:36726961 original size:33 final size:35
Alignment explanation
Indices: 36726914--36726984 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
36726904 ATTTTTTAGT
*
36726914 TAGGGTAATACTG-AAACTGTAGAA-ACTGAGACAG
1 TAGGGTAAAACTGAAAACTGTAGAAGAC-GAGACAG
* *
36726948 TAGGG-AAAACTGAAAACTTTAGAAGACGAGACTG
1 TAGGGTAAAACTGAAAACTGTAGAAGACGAGACAG
36726982 TAG
1 TAG
36726985 CTAGGTACGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
33 6 0.19
34 24 0.75
35 2 0.06
ACGTcount: A:0.42, C:0.11, G:0.27, T:0.20
Consensus pattern (35 bp):
TAGGGTAAAACTGAAAACTGTAGAAGACGAGACAG
Found at i:36728156 original size:14 final size:14
Alignment explanation
Indices: 36728137--36728166 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
36728127 TTTTTCTGTC
36728137 TTGGAGAATTAGGG
1 TTGGAGAATTAGGG
36728151 TTGGAGAATTAGGG
1 TTGGAGAATTAGGG
36728165 TT
1 TT
36728167 AGCCACCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.40, T:0.33
Consensus pattern (14 bp):
TTGGAGAATTAGGG
Found at i:36732361 original size:30 final size:30
Alignment explanation
Indices: 36732327--36732427 Score: 73
Period size: 30 Copynumber: 3.2 Consensus size: 30
36732317 GACCTGAATG
36732327 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTGTTACTATTTACTGCATGC
* * **
36732357 CATG-TT-ATTATTATCTGATAAGGTTGACCTAAATG-
1 CATGTTTGACTGTTA-CT-AT----TT-A-CTGCATGC
36732392 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTGTTACTATTTACTGCATGC
36732422 CATGTT
1 CATGTT
36732428 ATTATTATCT
Statistics
Matches: 52, Mismatches: 8, Indels: 22
0.63 0.10 0.27
Matches are distributed among these distances:
28 5 0.10
29 9 0.17
30 13 0.25
31 2 0.04
34 2 0.04
35 7 0.13
36 9 0.17
37 5 0.10
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.43
Consensus pattern (30 bp):
CATGTTTGACTGTTACTATTTACTGCATGC
Found at i:36732414 original size:65 final size:65
Alignment explanation
Indices: 36732310--36732440 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
36732300 CCCCTAGGGT
*
36732310 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTAAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
36732375 TAAGGTTGACCTAAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTAAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
36732440 T
1 T
36732441 GCGTGGGACT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTAAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:36735227 original size:45 final size:46
Alignment explanation
Indices: 36735173--36735311 Score: 174
Period size: 46 Copynumber: 3.0 Consensus size: 46
36735163 TTATCTTTGA
* * * * * *
36735173 CATGATGCCATAGTGTCTTTCAACTATGGTCTTATCA-TTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-CACATTTCATAT
*
36735218 CATGTTGCCATGGTATCTTTCAACCATGGGCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
36735264 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
36735310 CA
1 CA
36735312 GAGAGCACAC
Statistics
Matches: 82, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
44 2 0.02
45 33 0.40
46 47 0.57
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:36749361 original size:12 final size:12
Alignment explanation
Indices: 36749344--36749374 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
36749334 AGTACCACTT
36749344 CGGCCTCGACCA
1 CGGCCTCGACCA
36749356 CGGCCTCGACCA
1 CGGCCTCGACCA
36749368 CGGCCTC
1 CGGCCTC
36749375 TTCCTCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:36761823 original size:79 final size:80
Alignment explanation
Indices: 36761724--36761891 Score: 189
Period size: 80 Copynumber: 2.1 Consensus size: 80
36761714 CTCGTTCAAG
* * ** * *
36761724 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCAGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCAGA-A
*
36761787 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
36761803 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCAGAATT
36761868 AATAACTCGCACAAA
66 AATAACTCGCACAAA
*
36761883 TACCTTCGG
1 TGCCTTCGG
36761892 ATCTTAGTCC
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
79 32 0.43
80 42 0.57
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCAGAATT
AATAACTCGCACAAA
Found at i:36761875 original size:80 final size:80
Alignment explanation
Indices: 36761764--36761944 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
36761754 CTCATTCAAT
* * * *
36761764 GCCTTCGGGACTTAACCCAGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
36761827 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
36761843 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
36761907 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
36761924 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
36761945 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:36761904 original size:40 final size:40
Alignment explanation
Indices: 36761761--36761944 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
36761751 TAACTCATTC
* * *
36761761 AATGCCTTCGGGACTTAACCCAGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
36761801 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
36761841 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
36761881 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
36761922 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36761945 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 102 0.84
41 11 0.09
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:36855107 original size:40 final size:40
Alignment explanation
Indices: 36855062--36855334 Score: 217
Period size: 40 Copynumber: 6.9 Consensus size: 40
36855052 CGAATACACG
* * *
36855062 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** *
36855102 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
36855142 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
36855182 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
36855222 GTAACTC-GCACCAATGC-CTTCGGG-CTTAGCCCGGAATTAGTA
1 -TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGG-A-TA-TA
* * *
36855264 TC-TC-GCAC-AAT-C-CTTC-GGATCTTAGTCCGGATATGG
1 TCACCAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* *
36855300 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
36855335 CATCATTCGA
Statistics
Matches: 189, Mismatches: 31, Indels: 26
0.77 0.13 0.11
Matches are distributed among these distances:
35 1 0.01
36 6 0.03
37 6 0.03
38 12 0.06
39 21 0.11
40 125 0.66
41 16 0.08
42 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:36855262 original size:39 final size:39
Alignment explanation
Indices: 36855193--36855334 Score: 148
Period size: 39 Copynumber: 3.6 Consensus size: 39
36855183 CACTAGCATG
*
36855193 AATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
1 AATGC-CTTCGGGACTTAGCCCGGAATTAGTAACTCGCA-C
*
36855234 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
* * * *
36855272 AAT-CCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCAC
1 AATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCAC
*
36855311 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
36855335 CATCATTCGA
Statistics
Matches: 85, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
36 2 0.02
37 7 0.08
38 17 0.20
39 30 0.35
40 21 0.25
41 8 0.09
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
Found at i:36855679 original size:29 final size:29
Alignment explanation
Indices: 36855640--36855718 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
36855630 CTTAATAATC
*
36855640 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
36855670 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
36855699 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36855719 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:36855797 original size:42 final size:43
Alignment explanation
Indices: 36855747--36855833 Score: 167
Period size: 42 Copynumber: 2.0 Consensus size: 43
36855737 CTTATGCTTA
36855747 GCCAATCTCACAACCGTGAACACTTATTG-CCGCACACTTAGT
1 GCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGT
36855789 GCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGT
1 GCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGT
36855832 GC
1 GC
36855834 TGAAAACCAA
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 29 0.66
43 15 0.34
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCAATCTCACAACCGTGAACACTTATTGCCCGCACACTTAGT
Found at i:36857747 original size:37 final size:37
Alignment explanation
Indices: 36857697--36857775 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36857687 TTATTACGAA
* *
36857697 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
36857734 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
36857771 GTCTT
1 GTCTT
36857776 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:36858190 original size:49 final size:47
Alignment explanation
Indices: 36857894--36858339 Score: 759
Period size: 47 Copynumber: 9.4 Consensus size: 47
36857884 CCCTTCGGGA
* * * * * *
36857894 CTTATCACATTTAT-CACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36857940 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36857987 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36858034 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36858081 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36858129 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36858176 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36858225 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36858274 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36858321 CTTATCACATATATACACT
1 CTTATCACATATATACACT
36858340 GTCTTGGCTG
Statistics
Matches: 384, Mismatches: 12, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
46 11 0.03
47 230 0.60
48 47 0.12
49 96 0.25
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36862428 original size:31 final size:31
Alignment explanation
Indices: 36862385--36862446 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
36862375 TTCTCTCTCT
* *
36862385 TTTCTAACAATTTCACTAATCAAGTAATTAG
1 TTTCCAACAATTTCACTAATCAAGCAATTAG
*
36862416 TTTCCAACAATTTGACTAATCAAGCAATTAG
1 TTTCCAACAATTTCACTAATCAAGCAATTAG
36862447 CCACAAACAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (31 bp):
TTTCCAACAATTTCACTAATCAAGCAATTAG
Found at i:36863064 original size:30 final size:30
Alignment explanation
Indices: 36863030--36863087 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
36863020 TCCTTAACTC
36863030 AAACTTTTGCAAAATTACAATTTTGCCCTT
1 AAACTTTTGCAAAATTACAATTTTGCCCTT
* * *
36863060 AAACTTTTGCATATTTACACTTTTGCCC
1 AAACTTTTGCAAAATTACAATTTTGCCC
36863088 CTAGGCTCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCTT
Found at i:36866498 original size:13 final size:13
Alignment explanation
Indices: 36866480--36866504 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36866470 TCGAGCACAC
36866480 GCCCGTGTCCCTA
1 GCCCGTGTCCCTA
36866493 GCCCGTGTCCCT
1 GCCCGTGTCCCT
36866505 CACACGGCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTA
Found at i:36872545 original size:46 final size:46
Alignment explanation
Indices: 36872489--36872664 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
36872479 TTGTTGAGCA
*
36872489 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *** * * ** *
36872535 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
36872582 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* ** *
36872628 CCCGAGTTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36872665 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
46 67 0.66
47 35 0.34
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:36872645 original size:93 final size:93
Alignment explanation
Indices: 36872486--36872657 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
36872476 GGATTGTTGA
* * * *
36872486 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
36872551 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* **
36872579 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGTTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
36872644 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
36872658 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:36881597 original size:34 final size:34
Alignment explanation
Indices: 36881514--36881599 Score: 102
Period size: 34 Copynumber: 2.5 Consensus size: 34
36881504 GATTCTTTTT
*
36881514 CTGCATACTG-TACTGATATGGGCTAAGGCCCAGA
1 CTGC-TACTGTTACTGAAATGGGCTAAGGCCCAGA
** * * *
36881548 CTGCTTTTATCACTGAAATGGGCTAAGGCCTAGA
1 CTGCTACTGTTACTGAAATGGGCTAAGGCCCAGA
36881582 CTGCTACTGTTACTGAAA
1 CTGCTACTGTTACTGAAA
36881600 ACGGGGTTAA
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
33 2 0.05
34 39 0.95
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (34 bp):
CTGCTACTGTTACTGAAATGGGCTAAGGCCCAGA
Found at i:36883131 original size:21 final size:21
Alignment explanation
Indices: 36883105--36883148 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
36883095 AAGTGTACCG
* *
36883105 TACTGGTAGCTCTCCTGCAAT
1 TACTGGAAGCTCTCCTACAAT
*
36883126 TACTGGAAGCTCTTCTACAAT
1 TACTGGAAGCTCTCCTACAAT
36883147 TA
1 TA
36883149 TTGAATAGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (21 bp):
TACTGGAAGCTCTCCTACAAT
Found at i:36883240 original size:22 final size:23
Alignment explanation
Indices: 36883215--36883258 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
36883205 TTATCCCCAC
*
36883215 ATGGAGTGTAG-GGCTGGATGGA
1 ATGGAGTGTAGAGGATGGATGGA
36883237 ATGGAGTGTAGAGGATGGATGG
1 ATGGAGTGTAGAGGATGGATGG
36883259 GTAGGATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.25, C:0.02, G:0.50, T:0.23
Consensus pattern (23 bp):
ATGGAGTGTAGAGGATGGATGGA
Found at i:36892061 original size:49 final size:49
Alignment explanation
Indices: 36892008--36892189 Score: 238
Period size: 49 Copynumber: 3.7 Consensus size: 49
36891998 CTGGTATGCA
* *
36892008 TAGTAGCCTGCACTTAGTACTAAACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
** * * * * *
36892057 TAGTAGCCTATACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACG
*
36892108 TAATAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* *
36892157 TAGTAGCCTGCATTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
36892190 TCACTATAGA
Statistics
Matches: 111, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 67 0.60
50 6 0.05
51 38 0.34
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:36892174 original size:100 final size:100
Alignment explanation
Indices: 36891993--36892187 Score: 318
Period size: 100 Copynumber: 1.9 Consensus size: 100
36891983 TGTAGACAAG
* * *
36891993 GTTATCTGGTATGCATAGTAGCCTGCACTTAGTACTAAACATGCGACCAATTATCCGGTACACGT
1 GTTATCGGGTACGCATAATAGCCTGCACTTAGTACTAAACATGCGACCAATTATCCGGTACACGT
*
36892058 AGTAGCCTATACTTAGTACTACACACGTGATCGAA
66 AGTAGCCTACACTTAGTACTACACACGTGATCGAA
* *
36892093 GTTATCGGGTACGCATAATAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGT
1 GTTATCGGGTACGCATAATAGCCTGCACTTAGTACTAAACATGCGACCAATTATCCGGTACACGT
* *
36892158 AGTAGCCTGCATTTAGTACTACACACGTGA
66 AGTAGCCTACACTTAGTACTACACACGTGA
36892188 CCTCACTATA
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (100 bp):
GTTATCGGGTACGCATAATAGCCTGCACTTAGTACTAAACATGCGACCAATTATCCGGTACACGT
AGTAGCCTACACTTAGTACTACACACGTGATCGAA
Found at i:36892452 original size:27 final size:27
Alignment explanation
Indices: 36892422--36892475 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
36892412 TTCATACAAC
* *
36892422 CATGTAATAGTAATTTAG-CATTCAATT
1 CATGTAACAATAATTT-GCCATTCAATT
36892449 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTGCCATTCAATT
36892476 TCACATGACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 23 0.96
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTGCCATTCAATT
Found at i:36898589 original size:55 final size:55
Alignment explanation
Indices: 36898523--36898641 Score: 157
Period size: 55 Copynumber: 2.2 Consensus size: 55
36898513 CTTCTCCCAT
* **
36898523 GCCCGTGTTAATTTAATAGGTTTGACCACAGTTGCTTGGCACGGACGTGTCGCAC
1 GCCCGTGTTAATTTAACAGGTTTGACCACAGTTGCAAGGCACGGACGTGTCGCAC
* * * * * *
36898578 GCCCGTGTTAATTTGACAGGTTTGGCCACGGTTTCAAGGCATGGCCGTGTCGCAC
1 GCCCGTGTTAATTTAACAGGTTTGACCACAGTTGCAAGGCACGGACGTGTCGCAC
36898633 GCCCGTGTT
1 GCCCGTGTT
36898642 GTTTTGGCAG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.17, C:0.25, G:0.29, T:0.29
Consensus pattern (55 bp):
GCCCGTGTTAATTTAACAGGTTTGACCACAGTTGCAAGGCACGGACGTGTCGCAC
Found at i:36899676 original size:25 final size:25
Alignment explanation
Indices: 36899648--36899699 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
36899638 TCCTAGTCTG
36899648 TTTGGGTTTCCCAAGACCTAATTGT
1 TTTGGGTTTCCCAAGACCTAATTGT
36899673 TTTGGGTTTCCCAAGACCTAATTGT
1 TTTGGGTTTCCCAAGACCTAATTGT
36899698 TT
1 TT
36899700 AAACATCTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (25 bp):
TTTGGGTTTCCCAAGACCTAATTGT
Found at i:36904122 original size:48 final size:49
Alignment explanation
Indices: 36903990--36904311 Score: 226
Period size: 48 Copynumber: 6.7 Consensus size: 49
36903980 ATGCCAACAG
* * * * * *
36903990 CCCAGCTATGGTCTTACAC-GAAGTCTCATAAT-GGTGCTGATGCCATGT
1 CCCAGATATGGTCTTACACGGGA-TCTCATACTCGATGCCGATGCCATTT
* * * ** * * *
36904038 CCCATACATGGTCTTATATAGGACCTCCTA-TCGATGCCAATGCCATTT
1 CCCAGATATGGTCTTACACGGGATCTCATACTCGATGCCGATGCCATTT
* * * *
36904086 TCCAGATATGGTCTTACAAGGGATCTCATACT-GATGCTGATGCCATGT
1 CCCAGATATGGTCTTACACGGGATCTCATACTCGATGCCGATGCCATTT
** * * ** * *
36904134 CCCAGACGTGATCTTATACGGGATCTTTTA-TCGATGCTGATGCCATAT
1 CCCAGATATGGTCTTACACGGGATCTCATACTCGATGCCGATGCCATTT
* * * * *
36904182 CCAAGATATGGACTTACATGGGATCTCATACT-GATACCGATGCCATAT
1 CCCAGATATGGTCTTACACGGGATCTCATACTCGATGCCGATGCCATTT
* * *
36904230 CCCAGCTATGGTCTTACACGGGATCTCAT-CTCGATGTCGATGCCATAT
1 CCCAGATATGGTCTTACACGGGATCTCATACTCGATGCCGATGCCATTT
* * * * *
36904278 CACATAAATGATCTTATACGGGATCTCAATACTC
1 CCCAGATATGGTCTTACACGGGATCTC-ATACTC
36904312 ACATGTCGTG
Statistics
Matches: 211, Mismatches: 55, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
47 4 0.02
48 198 0.94
49 6 0.03
50 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (49 bp):
CCCAGATATGGTCTTACACGGGATCTCATACTCGATGCCGATGCCATTT
Found at i:36904129 original size:96 final size:95
Alignment explanation
Indices: 36903991--36904310 Score: 266
Period size: 96 Copynumber: 3.3 Consensus size: 95
36903981 TGCCAACAGC
* * * * * * *
36903991 CCAGCTATGGTCTTAC-ACGAAGTCTCATAATGGTGCTGATGCCATGTCCCATACATGGTCTTAT
1 CCAGATATGGTCTTACAAGGGA-TCTCATACTGATGCTGATGCCATGTCCCAGACATGATCTTAT
* *
36904055 ATAGGACCTCCTATCGATGCCAATGCCATTTT
65 ACAGGACCTCCTATCGATGCCAATGCCA-TAT
*
36904087 CCAGATATGGTCTTACAAGGGATCTCATACTGATGCTGATGCCATGTCCCAGACGTGATCTTATA
1 CCAGATATGGTCTTACAAGGGATCTCATACTGATGCTGATGCCATGTCCCAGACATGATCTTATA
* * ** **
36904152 CGGGATCTTTTATCGATGCTGATGCCATAT
66 CAGGACCTCCTATCGATGCCAATGCCATAT
* * * * * *
36904182 CCAAGATATGGACTTACATGGGATCTCATACTGATACCGATGCCATATCCCAG-CTATGGTCTTA
1 CC-AGATATGGTCTTACAAGGGATCTCATACTGATGCTGATGCCATGTCCCAGAC-ATGATCTTA
* * * * * * *
36904246 CACGGGATCTCATCTCGATGTCGATGCCATAT
64 TACAGGACCTCCTATCGATGCCAATGCCATAT
* * * * *
36904278 CACATAAATGATCTTATACGGGATCTCAATACT
1 C-CAGATATGGTCTTACAAGGGATCTC-ATACT
36904311 CACATGTCGT
Statistics
Matches: 184, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
95 5 0.03
96 170 0.92
97 9 0.05
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (95 bp):
CCAGATATGGTCTTACAAGGGATCTCATACTGATGCTGATGCCATGTCCCAGACATGATCTTATA
CAGGACCTCCTATCGATGCCAATGCCATAT
Found at i:36910044 original size:31 final size:31
Alignment explanation
Indices: 36910009--36910067 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
36909999 ATACCTGTCT
36910009 GAAGCCTTTTCATAAAACACATCACTGGGTC
1 GAAGCCTTTTCATAAAACACATCACTGGGTC
* *
36910040 GAAGCCTTTTCATAAATCATATCACTGG
1 GAAGCCTTTTCATAAAACACATCACTGG
36910068 CCAAAGCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (31 bp):
GAAGCCTTTTCATAAAACACATCACTGGGTC
Found at i:36910077 original size:30 final size:31
Alignment explanation
Indices: 36910010--36910078 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
36910000 TACCTGTCTG
* *
36910010 AAGCCTTTTCATAAAACACATCACTGGGTCG
1 AAGCCTTTTCATAAAACACATCACTGGGCCA
* *
36910041 AAGCCTTTTCATAAATCATATCACT-GGCCA
1 AAGCCTTTTCATAAAACACATCACTGGGCCA
36910071 AAGCCTTT
1 AAGCCTTT
36910079 ACTGTAAGCG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 11 0.32
31 23 0.68
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (31 bp):
AAGCCTTTTCATAAAACACATCACTGGGCCA
Found at i:36910326 original size:25 final size:25
Alignment explanation
Indices: 36910273--36910367 Score: 104
Period size: 25 Copynumber: 3.8 Consensus size: 25
36910263 TTTATCATAT
* *
36910273 AACTGGAGGCATAG-CCTCTTTTAAT-
1 AACTGG-GGCAAAGCCCT-TTTTGATA
36910298 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
36910323 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
36910348 AACTGGGGTATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
36910368 AGCACTTCCT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
24 12 0.19
25 50 0.81
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:36910867 original size:20 final size:17
Alignment explanation
Indices: 36910812--36910854 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
36910802 TTTTCCCAAA
36910812 TGGGCCTGAAAGCCCAT
1 TGGGCCTGAAAGCCCAT
36910829 TGGGCCTGAAAGCCCAT
1 TGGGCCTGAAAGCCCAT
36910846 TGGGCCTGA
1 TGGGCCTGA
36910855 TTCCAGCCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.19
Consensus pattern (17 bp):
TGGGCCTGAAAGCCCAT
Found at i:36911341 original size:27 final size:27
Alignment explanation
Indices: 36911311--36911396 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
36911301 GTAAATCTAC
36911311 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
36911338 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
36911364 AGAAAGTCAAGGGTATTTCTATAATTGTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
36911394 AAA
1 AAA
36911397 TTAGGGGTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
26 1 0.02
27 22 0.44
28 7 0.14
29 19 0.38
30 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:36911415 original size:27 final size:27
Alignment explanation
Indices: 36911398--36911497 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
36911388 TTGTGTAAAT
36911398 TAGGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * * * *
36911424 TTGAGGGTATTTCGATAATTTCATAAAC
1 TAG-GGGTATTTTGGTAATTTTACAAAC
**
36911452 TAGTCGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
36911479 TAGGGGTATTTTGGTAATT
1 TAGGGGTATTTTGGTAATT
36911498 CTACCCTATA
Statistics
Matches: 58, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
26 2 0.03
27 54 0.93
28 2 0.03
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:36911516 original size:54 final size:54
Alignment explanation
Indices: 36911373--36911489 Score: 148
Period size: 54 Copynumber: 2.2 Consensus size: 54
36911363 TAGAAAGTCA
* * * *
36911373 AGGGTATTTCTATAATTGT-GTAAATTAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATT-TCATAAACTAGGGGTATTTTGGTAATTTTACAAATAG
**
36911427 AGGGTATTTCGATAATTTCATAAACTAGTCGTATTTTGGTAATTTTACAAACTAG
1 AGGGTATTTCGATAATTTCATAAACTAGGGGTATTTTGGTAATTTTACAAA-TAG
36911482 -GGGTATTT
1 AGGGTATTT
36911490 TGGTAATTCT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
53 1 0.02
54 52 0.95
55 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCGATAATTTCATAAACTAGGGGTATTTTGGTAATTTTACAAATAG
Found at i:36911559 original size:27 final size:27
Alignment explanation
Indices: 36911529--36911620 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
36911519 GTAATTTCAC
*
36911529 AATCAAGGGTAAAATGGTAATTTTGTA
1 AATCAAGGGTAAAATAGTAATTTTGTA
* *
36911556 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCAAGGGTAAAATAGTAATTTTGTA
* * *
36911583 AATCAAGGGTAAAATAATAATTCTATA
1 AATCAAGGGTAAAATAGTAATTTTGTA
*
36911610 AATCGAGGGTA
1 AATCAAGGGTA
36911621 CTTTGATAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (27 bp):
AATCAAGGGTAAAATAGTAATTTTGTA
Found at i:36913981 original size:30 final size:31
Alignment explanation
Indices: 36913905--36913987 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
36913895 TCAGTCTCGA
*
36913905 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
36913935 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
36913966 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTAGGCCGAAGCCTTT
36913988 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 18 0.35
31 33 0.65
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTTCATAAAT
Found at i:36914227 original size:24 final size:25
Alignment explanation
Indices: 36914200--36914251 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
36914190 GCCTAGCCTC
*
36914200 TTTTAAT-AACTGGGGAAAAGCCCT
1 TTTTAATAAACTGAGGAAAAGCCCT
* *
36914224 TTTTGATAAACTGAGGCAAAGCCCT
1 TTTTAATAAACTGAGGAAAAGCCCT
36914249 TTT
1 TTT
36914252 CGGTCAACTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGAGGAAAAGCCCT
Found at i:36915208 original size:27 final size:27
Alignment explanation
Indices: 36915178--36915256 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
36915168 GTAAATCTAC
36915178 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
36915205 AAACCAATGGTATTTCTA-TAATTGTGT
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * **
36915232 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
36915257 ACAAATTGAG
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
27 41 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:36915261 original size:81 final size:81
Alignment explanation
Indices: 36915158--36915365 Score: 192
Period size: 81 Copynumber: 2.6 Consensus size: 81
36915148 CATCCTACAA
* * **
36915158 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-
1 GGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCATAAACCAATGGTATTT-TG
**
36915222 ATAATTGT-GTAAATCAG
65 ATAATTGTACAAAAT-AG
* *** * * * *
36915239 GGGTATTTTGGTAATTTTACAAATTGAGTGTATTTCGGTAATTTCATAAACCAGTGGTATTTTGG
1 GGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCATAAACCAATGGTATTTTGA
*
36915304 TAATTTTACAAAATAG
66 TAATTGTACAAAATAG
*
36915320 GGGTATTTTGGTAATTATAC---CCTATAGGGGTATTTCAGTAATTTCA
1 GGGTATTTTGGTAATTCTACAAACC-A-A-GGGTATTTCAGTAATTTCA
36915366 CAATTAAGGG
Statistics
Matches: 101, Mismatches: 21, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
80 2 0.02
81 95 0.94
82 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCATAAACCAATGGTATTTTGA
TAATTGTACAAAATAG
Found at i:36915262 original size:27 final size:26
Alignment explanation
Indices: 36915232--36915377 Score: 112
Period size: 27 Copynumber: 5.4 Consensus size: 26
36915222 ATAATTGTGT
36915232 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAAT-AGGGGTATTTTGGTAATTTTAC
* * * * *
36915259 AAATTGAGTGTATTTCGGTAATTTCAT
1 AAATAG-GGGTATTTTGGTAATTTTAC
* *
36915286 AAACCAGTGGTATTTTGGTAATTTTAC
1 AAA-TAGGGGTATTTTGGTAATTTTAC
*
36915313 AAAATAGGGGTATTTTGGTAATTATACC
1 -AAATAGGGGTATTTTGGTAATTTTA-C
** ** *
36915341 CTATAGGGGTATTTCAGTAATTTCAC
1 AAATAGGGGTATTTTGGTAATTTTAC
* *
36915367 AATTAAGGGTA
1 AAATAGGGGTA
36915378 AAGCGATAAT
Statistics
Matches: 90, Mismatches: 25, Indels: 9
0.73 0.20 0.07
Matches are distributed among these distances:
26 9 0.10
27 76 0.84
28 5 0.06
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (26 bp):
AAATAGGGGTATTTTGGTAATTTTAC
Found at i:36915354 original size:54 final size:55
Alignment explanation
Indices: 36915231--36915335 Score: 151
Period size: 54 Copynumber: 1.9 Consensus size: 55
36915221 TATAATTGTG
* * *
36915231 TAAATCAGGGGTATTTTGGTAATTTTAC-AAATTGAGTGTATTTCGGTAATTTCA
1 TAAACCAGGGGTATTTTGGTAATTTTACAAAATAGAGGGTATTTCGGTAATTTCA
* *
36915285 TAAACCAGTGGTATTTTGGTAATTTTACAAAATAG-GGGTATTTTGGTAATT
1 TAAACCAGGGGTATTTTGGTAATTTTACAAAATAGAGGGTATTTCGGTAATT
36915336 ATACCCTATA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
54 40 0.89
55 5 0.11
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (55 bp):
TAAACCAGGGGTATTTTGGTAATTTTACAAAATAGAGGGTATTTCGGTAATTTCA
Found at i:36915427 original size:26 final size:26
Alignment explanation
Indices: 36915371--36915442 Score: 72
Period size: 26 Copynumber: 2.7 Consensus size: 26
36915361 TTTCACAATT
* * * *
36915371 AAGGGTAAAGCGATAATTTTGTAAATC
1 AAGGGTAAAACAATAA-TTCGTAAAAC
*
36915398 AAGGGTAAAACAGTAATTCGTAAAAC
1 AAGGGTAAAACAATAATTCGTAAAAC
* *
36915424 AAGGTTAAAATAATAATTC
1 AAGGGTAAAACAATAATTC
36915443 TATAAATTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
26 24 0.65
27 13 0.35
ACGTcount: A:0.47, C:0.08, G:0.18, T:0.26
Consensus pattern (26 bp):
AAGGGTAAAACAATAATTCGTAAAAC
Found at i:36918474 original size:9 final size:9
Alignment explanation
Indices: 36918460--36918487 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
36918450 CTTACTAAAT
36918460 AATCACTCA
1 AATCACTCA
36918469 AATCACTCA
1 AATCACTCA
36918478 AATCACTCA
1 AATCACTCA
36918487 A
1 A
36918488 GGTGTTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.21
Consensus pattern (9 bp):
AATCACTCA
Found at i:36921088 original size:27 final size:27
Alignment explanation
Indices: 36921058--36921226 Score: 221
Period size: 27 Copynumber: 6.3 Consensus size: 27
36921048 TTAGTTTACC
*
36921058 AAATTACCAAAATACGCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
36921085 AAATTACTAAAATACTCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36921112 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
36921139 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
36921166 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
36921193 AAATTACCAAAATACCCCTTATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
36921220 AAATTAC
1 AAATTAC
36921227 TGAAATTGTA
Statistics
Matches: 122, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:36921226 original size:54 final size:54
Alignment explanation
Indices: 36921058--36921209 Score: 259
Period size: 54 Copynumber: 2.8 Consensus size: 54
36921048 TTAGTTTACC
* *
36921058 AAATTACCAAAATACGCCTGGTTTGTAAAATTACTAAAATACTCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
*
36921112 AAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* *
36921166 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
36921210 CTTATTTGTG
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:36923988 original size:27 final size:27
Alignment explanation
Indices: 36923950--36924006 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
36923940 GTATGGGGCG
36923950 TTATAGAAATACCCTCAACCTGTAAAA
1 TTATAGAAATACCCTCAACCTGTAAAA
* *
36923977 TTATTGAAATACCCTCAACTTGTAAAA
1 TTATAGAAATACCCTCAACCTGTAAAA
36924004 TTA
1 TTA
36924007 CCGAAGTACC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (27 bp):
TTATAGAAATACCCTCAACCTGTAAAA
Found at i:36924016 original size:27 final size:27
Alignment explanation
Indices: 36923955--36924018 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
36923945 GGGCGTTATA
**
36923955 GAAATACCCTCAACCTGTAAAATTATT
1 GAAATACCCTCAACCTGTAAAATTACC
*
36923982 GAAATACCCTCAACTTGTAAAATTACC
1 GAAATACCCTCAACCTGTAAAATTACC
*
36924009 GAAGTACCCT
1 GAAATACCCT
36924019 TGATTTACAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (27 bp):
GAAATACCCTCAACCTGTAAAATTACC
Found at i:36924032 original size:27 final size:27
Alignment explanation
Indices: 36924000--36924074 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 27
36923990 CTCAACTTGT
*
36924000 AAAATTACCGAAGTACCCTTGATTTAC
1 AAAATTACCGAAATACCCTTGATTTAC
* * *** **
36924027 AGAATTATCGTTTTACCCTCAATTTAC
1 AAAATTACCGAAATACCCTTGATTTAC
36924054 AAAATTACCGAAATACCCTTG
1 AAAATTACCGAAATACCCTTG
36924075 TAAGGTAGAA
Statistics
Matches: 34, Mismatches: 14, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGATTTAC
Found at i:36924089 original size:27 final size:27
Alignment explanation
Indices: 36924056--36924208 Score: 157
Period size: 27 Copynumber: 5.7 Consensus size: 27
36924046 CAATTTACAA
36924056 AATTACCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
* * *
36924083 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
* *
36924110 GATTACCGAAATACCCTTAT-AGAGTAG
1 AATTACCGAAATACCCTTGTAAG-GTAG
* * * *
36924137 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAAGGTAG
* *
36924164 GATTACTGAAATACTCC-TGTAAGGTAG
1 AATTACCGAAATAC-CCTTGTAAGGTAG
* *
36924191 AATTATCGAGATACCCTT
1 AATTACCGAAATACCCTT
36924209 ATGGGGTAAA
Statistics
Matches: 99, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
26 3 0.03
27 93 0.94
28 3 0.03
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAAGGTAG
Found at i:36924115 original size:54 final size:54
Alignment explanation
Indices: 36924057--36924206 Score: 214
Period size: 54 Copynumber: 2.8 Consensus size: 54
36924047 AATTTACAAA
36924057 ATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGTAGG
1 ATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGTAGG
* *
36924111 ATTACCGAAATACCCTTAT-AGAGTAGAAATACCAAAATACCCCTGTAGGGTAGG
1 ATTACCGAAATACCCTTGTAAG-GTAGAAATACCGAAATACCCCTGTAGGGTAGG
* * * *
36924165 ATTACTGAAATACTCC-TGTAAGGTAGAATTATCGAGATACCC
1 ATTACCGAAATAC-CCTTGTAAGGTAGAAATACCGAAATACCC
36924207 TTATGGGGTA
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
53 2 0.02
54 79 0.93
55 4 0.05
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (54 bp):
ATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGTAGG
Found at i:36924223 original size:54 final size:53
Alignment explanation
Indices: 36924054--36924224 Score: 191
Period size: 54 Copynumber: 3.2 Consensus size: 53
36924044 CTCAATTTAC
36924054 AAAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCC-TGTAAGGTAGAAATACCGAAATACCCCTGTAGGGT
** *
36924108 AGGATTACCGAAATACCCT-TATAGAGTAGAAATACCAAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCTGTA-AG-GTAGAAATACCGAAATACCCCTGTAGGGT
** * * * * * * *
36924162 AGGATTACTGAAATACTCCTGTAAGGTAGAATTATCGAGATACCCTTATGGGGT
1 AAAATTACCGAAATAC-CCTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGT
36924216 AAAATTACC
1 AAAATTACC
36924225 ATTTTACCCC
Statistics
Matches: 99, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
52 2 0.02
53 3 0.03
54 87 0.88
55 5 0.05
56 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (53 bp):
AAAATTACCGAAATACCCTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGT
Found at i:36924225 original size:81 final size:81
Alignment explanation
Indices: 36924054--36924225 Score: 211
Period size: 81 Copynumber: 2.1 Consensus size: 81
36924044 CTCAATTTAC
* * * *
36924054 AAAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGGTAGGATTACCGA
1 AAAATTACCAAAATACCCCTGTAAGGTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCGA
36924119 AATACCCTTATAGAGT
66 AATACCCTTATAGAGT
* * * * * *
36924135 AGAAA-TACCAAAATACCCCTGTAGGGTAGGATTACTGAAATACTCCTGTAAGGTAGAATTATCG
1 A-AAATTACCAAAATACCCCTGTAAGGTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCG
* * *
36924199 AGATACCCTTATGGGGT
65 AAATACCCTTATAGAGT
36924216 AAAATTACCA
1 AAAATTACCA
36924226 TTTTACCCCT
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 3 0.04
81 70 0.92
82 3 0.04
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTGTAAGGTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACCGA
AATACCCTTATAGAGT
Found at i:36924513 original size:27 final size:26
Alignment explanation
Indices: 36924469--36924519 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
36924459 CTCGCTGCAA
*
36924469 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
36924496 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
36924520 GGTAACCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:36924648 original size:6 final size:6
Alignment explanation
Indices: 36924639--36924792 Score: 102
Period size: 6 Copynumber: 24.8 Consensus size: 6
36924629 TTGCATTCAC
* * *
36924639 ATTCTG ATTCTG -TTACCTG ATACTG ATTCTA ATTCTG -TTGCCTA ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * *
36924689 ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATT--CTG
* * *
36924739 ATTCTG ATTCTG ATTTTG ATTCTG -TCATCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
36924788 ATTCT
1 ATTCT
36924793 AGTTCTAATA
Statistics
Matches: 115, Mismatches: 18, Indels: 30
0.71 0.11 0.18
Matches are distributed among these distances:
5 9 0.08
6 85 0.74
7 14 0.12
8 7 0.06
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:36924666 original size:19 final size:19
Alignment explanation
Indices: 36924661--36924750 Score: 112
Period size: 19 Copynumber: 4.8 Consensus size: 19
36924651 TTACCTGATA
* *
36924661 CTGATTCTAATTCTGTTGC
1 CTGATTCTGATTCTGTTAC
*
36924680 CTAATTCTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
36924698 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
36924717 CTGATACTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
36924736 CTAATTCTGATTCTG
1 CTGATTCTGATTCTG
36924751 ATTTTGATTC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
17 3 0.05
18 13 0.21
19 43 0.69
20 3 0.05
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.47
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:36924667 original size:25 final size:25
Alignment explanation
Indices: 36924639--36924753 Score: 86
Period size: 25 Copynumber: 4.4 Consensus size: 25
36924629 TTGCATTCAC
*
36924639 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTTACCTAATACTG
* * *
36924664 ATTCTAATTCTGTTGCCTAATTCTG
1 ATTCTGATTCTGTTACCTAATACTG
* * **
36924689 ATTCTGGTTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTG--T-T-A-CCTAATA-CTG
* *
36924720 ATACTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGTTACCTAATACTG
36924745 ATTCTGATT
1 ATTCTGATT
36924754 TTGATTCTGT
Statistics
Matches: 66, Mismatches: 18, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
25 42 0.64
26 3 0.05
27 2 0.03
28 2 0.03
29 1 0.02
30 3 0.05
31 13 0.20
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGTTACCTAATACTG
Found at i:36924703 original size:37 final size:37
Alignment explanation
Indices: 36924661--36924731 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
36924651 TTACCTGATA
* *
36924661 CTGATTCTAATTCTGTTGCCTAATTCTGATTCTGGTT
1 CTGATTCTAATTCTGTTACCTAATACTGATTCTGGTT
* *
36924698 CTGATTCTGATTCTGTTACCTGATACTGATTCTG
1 CTGATTCTAATTCTGTTACCTAATACTGATTCTG
36924732 TTACCTAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (37 bp):
CTGATTCTAATTCTGTTACCTAATACTGATTCTGGTT
Found at i:36924730 original size:56 final size:57
Alignment explanation
Indices: 36924639--36924762 Score: 169
Period size: 56 Copynumber: 2.1 Consensus size: 57
36924629 TTGCATTCAC
* *
36924639 ATTCTGATTCTGTTACCTGATACTGATTCTAATTCTGTTGCCTAATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGTTACCTGATACTG----T-ATTCTGTTACCTAATTCTGATTCTGATTCTG
*
36924701 ATTCTGATTCTGTTACCTGATACTG-ATTCTGTTACCTAATTCTGATTCTGATTTTG
1 ATTCTGATTCTGTTACCTGATACTGTATTCTGTTACCTAATTCTGATTCTGATTCTG
36924757 ATTCTG
1 ATTCTG
36924763 TCATCTGATT
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
56 34 0.58
62 25 0.42
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (57 bp):
ATTCTGATTCTGTTACCTGATACTGTATTCTGTTACCTAATTCTGATTCTGATTCTG
Found at i:36924752 original size:31 final size:31
Alignment explanation
Indices: 36924717--36924780 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
36924707 ATTCTGTTAC
*
36924717 CTGATACTGATTCTGTTACCTAATTCTGATT
1 CTGATACTGATTCTGTCACCTAATTCTGATT
** * *
36924748 CTGATTTTGATTCTGTCATCTGATTCTGATT
1 CTGATACTGATTCTGTCACCTAATTCTGATT
36924779 CT
1 CT
36924781 CATTTTGATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
CTGATACTGATTCTGTCACCTAATTCTGATT
Found at i:36924786 original size:31 final size:31
Alignment explanation
Indices: 36924724--36924792 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
36924714 TACCTGATAC
* *
36924724 TGATTCTGTTACCTAATTCTGATTCTGATTT
1 TGATTCTGTCACCTAATTCTGATTCTCATTT
* *
36924755 TGATTCTGTCATCTGATTCTGATTCTCATTT
1 TGATTCTGTCACCTAATTCTGATTCTCATTT
36924786 TGATTCT
1 TGATTCT
36924793 AGTTCTAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.17, C:0.17, G:0.13, T:0.52
Consensus pattern (31 bp):
TGATTCTGTCACCTAATTCTGATTCTCATTT
Found at i:36945510 original size:93 final size:94
Alignment explanation
Indices: 36945347--36945612 Score: 273
Period size: 93 Copynumber: 2.9 Consensus size: 94
36945337 ATTTGTGTGA
* * *
36945347 GCTAGTGTAAGACATGTCT-GGACATGCATCGGCCAC-ATTA-TAAGAGCCAATGTAAGACCATG
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGA-GAGT-AGAGCCAATGTAAGACCATG
* *
36945409 TTTGGGACATGGCATCGAC-ATTGAGACGAGT
64 TCTAGGACATGGCATCGACTA-TGAGACGAGT
* * *
36945440 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGGGACGTA-AGCTAATATAAGA-CATGT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGA-GTAGAGCCAATGTAAGACCATGT
* * *
36945503 CTAGGACAT-GCATCGGCTATGAGATGTGT
65 CTAGGACATGGCATCGACTATGAGACGAGT
*
36945532 -C-AGTGTAAGACCATGTCTAGGACATGGCATCAGCCTCGA-AGATGATAGCCAATGTAAGACCA
1 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCTCGAGAG-T-AGAGCCAATGTAAGACCA
*
36945594 TGTCTAGGACATGACATCG
62 TGTCTAGGACATGGCATCG
36945613 GCACTTTACC
Statistics
Matches: 146, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
90 10 0.07
91 17 0.12
92 28 0.19
93 43 0.29
94 41 0.28
95 6 0.04
96 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGAGTAGAGCCAATGTAAGACCATGTC
TAGGACATGGCATCGACTATGAGACGAGT
Found at i:36948667 original size:30 final size:30
Alignment explanation
Indices: 36948633--36948798 Score: 90
Period size: 30 Copynumber: 5.2 Consensus size: 30
36948623 GACCTGGATG
*
36948633 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTATTACTATTTACTGCATGC
* *
36948663 CATG-TT-ATTATTATCTGATAAGGTTGACCTGAATG-
1 CATGTTTGACTATTA-CT-AT----TT-A-CTGCATGC
*
36948698 CATGCTTGACTATTACTATTTACTGCATGC
1 CATGTTTGACTATTACTATTTACTGCATGC
* * *
36948728 CATGTTATTATTATCTGA-TAAGGTTTACCTGAATG-
1 CATGTT-TGACTAT-T-ACT-A--TTTA-CTGCATGC
*
36948763 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTATTACTATTTACTGCATGC
36948793 CATGTT
1 CATGTT
36948799 ATTATTATCT
Statistics
Matches: 103, Mismatches: 13, Indels: 40
0.66 0.08 0.26
Matches are distributed among these distances:
28 5 0.05
29 16 0.16
30 22 0.21
31 7 0.07
32 4 0.04
33 4 0.04
34 6 0.06
35 17 0.17
36 16 0.16
37 6 0.06
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.42
Consensus pattern (30 bp):
CATGTTTGACTATTACTATTTACTGCATGC
Found at i:36948720 original size:65 final size:65
Alignment explanation
Indices: 36948616--36948811 Score: 356
Period size: 65 Copynumber: 3.0 Consensus size: 65
36948606 CCCCTAGGGT
*
36948616 TAAGGTTGACCTGGATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
* *
36948681 TAAGGTTGACCTGAATGCATGCTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
*
36948746 TAAGGTTTACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
36948811 T
1 T
36948812 GCATGGGACT
Statistics
Matches: 125, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 125 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:36948767 original size:35 final size:35
Alignment explanation
Indices: 36948663--36948768 Score: 102
Period size: 35 Copynumber: 3.2 Consensus size: 35
36948653 TACTGCATGC
*
36948663 CATGTTATTATTATCTGATAAGGTTGACCTGAATG
1 CATGTTATTATTATCTGATAAGGTTTACCTGAATG
* *
36948698 CATGCTTGACTATTA-C---T-A--TTTA-CTGCATG
1 CATG-TT-ATTATTATCTGATAAGGTTTACCTGAATG
36948727 CCATGTTATTATTATCTGATAAGGTTTACCTGAATG
1 -CATGTTATTATTATCTGATAAGGTTTACCTGAATG
36948763 CATGTT
1 CATGTT
36948769 TGACTGTTAC
Statistics
Matches: 55, Mismatches: 5, Indels: 22
0.67 0.06 0.27
Matches are distributed among these distances:
28 6 0.11
29 9 0.16
30 7 0.13
32 2 0.04
33 2 0.04
35 14 0.25
36 9 0.16
37 6 0.11
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (35 bp):
CATGTTATTATTATCTGATAAGGTTTACCTGAATG
Found at i:36954896 original size:29 final size:27
Alignment explanation
Indices: 36954878--36954947 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
36954868 ATATTAAGTC
36954878 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
36954905 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
36954933 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
36954948 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:36954941 original size:28 final size:28
Alignment explanation
Indices: 36954878--36954975 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
36954868 ATATTAAGTC
*
36954878 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
36954905 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
36954933 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
36954962 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36954976 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36962029 original size:10 final size:10
Alignment explanation
Indices: 36962014--36962041 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
36962004 ATATTACATG
36962014 TTTACTTTGT
1 TTTACTTTGT
36962024 TTTACTTTGT
1 TTTACTTTGT
36962034 TTTACTTT
1 TTTACTTT
36962042 TTCCCCTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.07, T:0.71
Consensus pattern (10 bp):
TTTACTTTGT
Found at i:36962359 original size:3 final size:3
Alignment explanation
Indices: 36962351--36962375 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
36962341 GCTTTTTTAC
36962351 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
36962376 TTACTTTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:36966705 original size:46 final size:46
Alignment explanation
Indices: 36966638--36966730 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
36966628 ATAAGTTTTT
*
36966638 CCAACATAAAACATCGACATTAGAAAGTTGAAATTAAAAATACTCA
1 CCAACATAAAACATCGACATTAGAAAGTTGAAATTAAAAACACTCA
*
36966684 CCAACATAGAACATCGACATTAGAAAGTTGAAATTAAAAACACTCA
1 CCAACATAAAACATCGACATTAGAAAGTTGAAATTAAAAACACTCA
36966730 C
1 C
36966731 AGAATTTCGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.51, C:0.19, G:0.10, T:0.20
Consensus pattern (46 bp):
CCAACATAAAACATCGACATTAGAAAGTTGAAATTAAAAACACTCA
Found at i:36976467 original size:46 final size:44
Alignment explanation
Indices: 36976405--36976581 Score: 167
Period size: 46 Copynumber: 3.9 Consensus size: 44
36976395 ATATTTGGGC
*
36976405 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *** * *
36976449 ATGTCCGAACACGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
36976498 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
36976542 ACACCCAAGGTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 A-TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36976582 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 19, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 4 0.04
46 60 0.57
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:36976561 original size:93 final size:93
Alignment explanation
Indices: 36976402--36976573 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
36976392 AGGATATTTG
** * *
36976402 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACACGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCACCCAACACATTGAG
36976467 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * **
36976495 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CACCCAAGGTCATTGA
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCACCCAA-CACATTGA
36976559 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
36976574 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 4 0.06
93 66 0.94
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCACCCAACACATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:36981268 original size:29 final size:29
Alignment explanation
Indices: 36981224--36981361 Score: 165
Period size: 29 Copynumber: 4.8 Consensus size: 29
36981214 TACATACATG
*
36981224 CATATGG-CCATCAGGGCCAAATATCATT
1 CATATGGCCCATCAGGCCCAAATATCATT
*
36981252 CATATGGCCCATCAGGGCCAAATATCATT
1 CATATGGCCCATCAGGCCCAAATATCATT
*
36981281 CATATGGCCCATCAGGCCCAATTCAT-ATT
1 CATATGGCCCATCAGGCCCAAAT-ATCATT
* *
36981310 CATATGGCCCATTAGGCCCAAATCA-CCTT
1 CATATGGCCCATCAGGCCCAAAT-ATCATT
* * *
36981339 TATATGGCCCGTTAGGCCCAAAT
1 CATATGGCCCATCAGGCCCAAAT
36981362 CACCTTATTG
Statistics
Matches: 100, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
28 7 0.07
29 91 0.91
30 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (29 bp):
CATATGGCCCATCAGGCCCAAATATCATT
Found at i:36983135 original size:29 final size:29
Alignment explanation
Indices: 36983098--36983155 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
36983088 AGTATTCTAA
36983098 TTGTTCAACAGGTATTATAATTAATAATG
1 TTGTTCAACAGGTATTATAATTAATAATG
*
36983127 TTGTTCAACGGGTATTATAATTAATAATG
1 TTGTTCAACAGGTATTATAATTAATAATG
36983156 CAGTGAAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (29 bp):
TTGTTCAACAGGTATTATAATTAATAATG
Found at i:36992102 original size:29 final size:29
Alignment explanation
Indices: 36992060--36992118 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
36992050 TAAGTACATA
36992060 TTAGAGTGGGAATTTGATGTTTCCGTAGG
1 TTAGAGTGGGAATTTGATGTTTCCGTAGG
36992089 TTAGAGTGGGAATTTGATGTTTCCGTAGG
1 TTAGAGTGGGAATTTGATGTTTCCGTAGG
36992118 T
1 T
36992119 AAATAAATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.20, C:0.07, G:0.34, T:0.39
Consensus pattern (29 bp):
TTAGAGTGGGAATTTGATGTTTCCGTAGG
Found at i:36992698 original size:53 final size:53
Alignment explanation
Indices: 36992523--36992726 Score: 180
Period size: 53 Copynumber: 3.8 Consensus size: 53
36992513 ATTAGGGTTT
* * *
36992523 AAGGATACCAAGTAAGACCATGCCAAGGCATTG-CATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCA-TGACAATGGTAAG-TTCACAAGGC
* * * * * * * *
36992577 AAGGAAATCATGTAAGACCATGTCAAGAG-ATGGCATTGATAAACTATGACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAG-GCATGACAATGGT-AAGT-TCACAAGGC
* * * *
36992632 AAAGATCCCATGTAAGACCATGCCAAGGCATGACAATGGTTAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATGGTAAGTTCACAAGGC
* *
36992685 AAGGATACCATGTAAGACCATGTCAAGACATGGA-AATGGTAA
1 AAGGATACCATGTAAGACCATGCCAAGGCAT-GACAATGGTAA
36992727 CTTTAAAAAG
Statistics
Matches: 120, Mismatches: 24, Indels: 13
0.76 0.15 0.08
Matches are distributed among these distances:
53 43 0.36
54 36 0.30
55 41 0.34
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGACAATGGTAAGTTCACAAGGC
Found at i:36998562 original size:46 final size:45
Alignment explanation
Indices: 36998430--36998600 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 45
36998420 TGCATGAGCT
* * **
36998430 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACAAG-GCC
* * * *
36998476 AGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGAGACAAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACAAG-GCC
*
36998524 AATGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACTTAA-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC--AAGGCC
*
36998570 AGTGTAAGACATGTTTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
36998601 TACGAGATGT
Statistics
Matches: 104, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 54 0.52
47 26 0.25
48 23 0.22
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACAAGGCC
Found at i:36998607 original size:46 final size:45
Alignment explanation
Indices: 36998430--36998643 Score: 170
Period size: 46 Copynumber: 4.6 Consensus size: 45
36998420 TGCATGAGCT
* * *
36998430 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATTA-AGCC
* * * *
36998476 AGTGTAAGACCATGTCTGGGATATGGCATCGGC-ATTGAGA-CAAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGATTAA--GCC
*
36998524 AATGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGA-TTAAGCC
* *
36998570 AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAT-TAAGCC
* *
36998614 AGTGTAAGATCATATTTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
36998644 AGCACAGATA
Statistics
Matches: 140, Mismatches: 14, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 62 0.44
47 29 0.21
48 21 0.15
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATTAAGCC
Found at i:36998686 original size:50 final size:49
Alignment explanation
Indices: 36998632--36998744 Score: 181
Period size: 50 Copynumber: 2.3 Consensus size: 49
36998622 ATCATATTTG
36998632 GGACATGGCATCAGCACAGATATGCTAGAGCTTGTGTAAGACCATGTCTA
1 GGACATGGCATC-GCACAGATATGCTAGAGCTTGTGTAAGACCATGTCTA
* * *
36998682 GGACATGACATTCGCACAGATATGCTAGAGCTTGTGTAAGACCGTGTCTG
1 GGACATGGCA-TCGCACAGATATGCTAGAGCTTGTGTAAGACCATGTCTA
36998732 GGACATGGCATCG
1 GGACATGGCATCG
36998745 GCACTTGCAC
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
49 3 0.05
50 53 0.91
51 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
GGACATGGCATCGCACAGATATGCTAGAGCTTGTGTAAGACCATGTCTA
Found at i:37010905 original size:48 final size:46
Alignment explanation
Indices: 37010802--37010927 Score: 150
Period size: 47 Copynumber: 2.7 Consensus size: 46
37010792 TCACTTACGT
*
37010802 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGA
* * *
37010848 GAGCCAGTGTAAGACCATGTTTGGGATATGACATCGG-CAT-TGA-GA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCATATGATGA
37010893 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCAT
1 -GA--GCTAGTGTAAGACATGTCTGGGACATGCAT
37010928 TGACCTCGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
45 2 0.03
46 20 0.29
47 29 0.43
48 17 0.25
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGA
Found at i:37012071 original size:13 final size:13
Alignment explanation
Indices: 37012053--37012077 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37012043 TGACCATGTG
37012053 AGGGACACGGGCC
1 AGGGACACGGGCC
37012066 AGGGACACGGGC
1 AGGGACACGGGC
37012078 GTGTGCCCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:37016128 original size:43 final size:43
Alignment explanation
Indices: 37016075--37016158 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
37016065 TATATGTGGT
**
37016075 ATCCGAGCTCGTCGAGTGGTCCGAGTTCATTGTGGATGCGAGC
1 ATCCGAGCTCGTCGAGTGGTCCGAGTTCATAATGGATGCGAGC
*
37016118 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGA
1 ATCCGAGCTCGTCGAGTGGTCCGAGTTCATAATGGATGCGA
37016159 TACATGTGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.19, C:0.21, G:0.33, T:0.26
Consensus pattern (43 bp):
ATCCGAGCTCGTCGAGTGGTCCGAGTTCATAATGGATGCGAGC
Found at i:37017300 original size:16 final size:16
Alignment explanation
Indices: 37017279--37017315 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
37017269 TGAAATATGC
37017279 TTAAGTACATGAGTGA
1 TTAAGTACATGAGTGA
37017295 TTAAGTACATGAGTGA
1 TTAAGTACATGAGTGA
37017311 TTAAG
1 TTAAG
37017316 GGTGTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.32
Consensus pattern (16 bp):
TTAAGTACATGAGTGA
Found at i:37026918 original size:15 final size:14
Alignment explanation
Indices: 37026896--37026930 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
37026886 GATAAATTAA
*
37026896 AAAATTAAATGTTT
1 AAAATTAAATATTT
37026910 AAGAATTAAATATTT
1 AA-AATTAAATATTT
37026925 AAAATT
1 AAAATT
37026931 TAAGTATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (14 bp):
AAAATTAAATATTT
Found at i:37027254 original size:26 final size:26
Alignment explanation
Indices: 37027198--37027254 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
37027188 AAAGTTATTG
* *
37027198 GTATTTTAAAAATTATAAAATAATTA
1 GTATTTTAAAAATAATAAAATAATAA
* *
37027224 TTATTTTAAAAATAATTAATATAA-AA
1 GTATTTTAAAAATAA-TAAAATAATAA
37027250 GTATT
1 GTATT
37027255 CAAAATATCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (26 bp):
GTATTTTAAAAATAATAAAATAATAA
Found at i:37034762 original size:48 final size:48
Alignment explanation
Indices: 37034701--37034869 Score: 207
Period size: 48 Copynumber: 3.6 Consensus size: 48
37034691 TGATACGTGT
*
37034701 GCTAGTATAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAA
* * * * * ** *
37034749 GCTAGTGTGAGACATGTTTGGGACATGCATCGACATTGAG--ACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAA
* *
37034795 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAA
* *
37034843 GCTAGTGTAAGACTTGTCTGAGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
37034870 GCGTCAGCTT
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
46 37 0.38
48 61 0.62
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAA
Found at i:37040994 original size:24 final size:24
Alignment explanation
Indices: 37040900--37040987 Score: 131
Period size: 24 Copynumber: 3.7 Consensus size: 24
37040890 GATTCAACTC
* * * *
37040900 CGCACACATAGTGCCAAATAATTC
1 CGCACACATAGTGCCATACAAATA
*
37040924 CGCACACATAGTGCCATACATATA
1 CGCACACATAGTGCCATACAAATA
37040948 CGCACACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATA
37040972 CGCACACATAGTGCCA
1 CGCACACATAGTGCCA
37040988 CTCAAATCTG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.38, C:0.31, G:0.14, T:0.18
Consensus pattern (24 bp):
CGCACACATAGTGCCATACAAATA
Found at i:37043875 original size:46 final size:46
Alignment explanation
Indices: 37043821--37044031 Score: 280
Period size: 46 Copynumber: 4.6 Consensus size: 46
37043811 CTATGATAGA
37043821 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
* *
37043867 AAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
* ***
37043913 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACGGGG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-TATG
** * * *
37043960 AAATGAATAAGACCATGGTTGAATGATACCATGGCAACATGACA-G
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
* *
37044005 AAAATGAGTAAGACCATAGTTGAAAGA
1 -AAATGTGTAAGACCATGGTTGAAAGA
37044032 CAGAATTCAT
Statistics
Matches: 148, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 107 0.72
47 40 0.27
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.21
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
Found at i:37044016 original size:93 final size:91
Alignment explanation
Indices: 37043813--37044031 Score: 285
Period size: 93 Copynumber: 2.4 Consensus size: 91
37043803 AGTGTGCTCT
* * **
37043813 ATGATAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAACGTGTAAG
1 ATGA-AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGGAAACGAATAAG
37043878 ACCATGGTTGAAAGATACCATGGCAAC
65 ACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
37043905 CTGATGTGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACGGGGAAATGAATAA
1 ATGAAG-AAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-GAGGAAACGAATAA
*
37043970 GACCATGGTTGAATGATACCATGGCAAC
64 GACCATGGTTGAAAGATACCATGGCAAC
* *
37043998 ATGACAGAAAATGAGTAAGACCATAGTTGAAAGA
1 ATGA-AGAAAATGTGTAAGACCATGGTTGAAAGA
37044032 CAGAATTCAT
Statistics
Matches: 108, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
91 1 0.01
92 44 0.41
93 62 0.57
94 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (91 bp):
ATGAAGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGAGGAAACGAATAAGA
CCATGGTTGAAAGATACCATGGCAAC
Found at i:37045918 original size:40 final size:40
Alignment explanation
Indices: 37045874--37046099 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 40
37045864 GCTCCTCGTT
* * *
37045874 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCA
* *
37045914 CAAATGCCTTCGGGTCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCA
* *
37045954 CAAATGCCTTCGGGACTTAACCC-GAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATA-TAGTAACTCGCA
* *
37045994 CAAATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCG
1 CAAATGCCTTCGGGACTTAACCCGGATA-TAGTAACTCGCA
* * ** * * *
37046034 CAAAGGCC-TCCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TCGCA
*
37046075 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37046100 CATCATTCAA
Statistics
Matches: 159, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 7 0.04
40 137 0.86
41 15 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCA
Found at i:37046087 original size:120 final size:120
Alignment explanation
Indices: 37045874--37046097 Score: 281
Period size: 120 Copynumber: 1.9 Consensus size: 120
37045864 GCTCCTCGTT
* * * * *
37045874 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGTCTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCACAAAGGCCTCCGGATCTTAACCCGG
* *
37045939 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAATTAGTATCTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGAAATTAGTATCTCGCA
* * * **
37045994 CAAATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCGCAAAGGCCTCCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAACCCGGATA-TAGTAACTCGCACAAAGGCCTCCGGATCTTAACCCG
* * *
37046058 GATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
65 GATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCG
37046098 GACATCATTC
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
119 1 0.01
120 78 0.90
121 8 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCACAAAGGCCTCCGGATCTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGAAATTAGTATCTCGCA
Found at i:37049836 original size:40 final size:39
Alignment explanation
Indices: 37049738--37049971 Score: 306
Period size: 40 Copynumber: 5.9 Consensus size: 39
37049728 ATTTGGATGA
* ** * *
37049738 AAACCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACT
1 AAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
37049777 AATCCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACT
1 AAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
37049816 AAACTCGGGCTAAGTCCCGAAGGTATTTGTGCGAATTATT
1 AAAC-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
37049856 AAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 AAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
37049896 AAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 AAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
37049936 CTAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 -AAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
37049972 AGTTATATCC
Statistics
Matches: 174, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.21
40 134 0.77
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
AAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:37058290 original size:38 final size:38
Alignment explanation
Indices: 37058196--37058345 Score: 192
Period size: 38 Copynumber: 3.9 Consensus size: 38
37058186 CAAGGTATAA
* * * *
37058196 AACCCAAACATAACACCAGCACGAAGCCTTCGGGACTTT
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGA-TTT
* * *
37058235 CAACTCAGATATAATACCAGCACTAGGCCTGCGGGATTT
1 -AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
37058274 AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
* * *
37058312 AACCCGGATATATTACCAGCACAAAGCCTGCGGG
1 AACCCAGATATAATACCAGCACGAAGCCTGCGGG
37058346 TCTTTAAGCC
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
38 66 0.68
39 3 0.03
40 28 0.29
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (38 bp):
AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:37058297 original size:78 final size:76
Alignment explanation
Indices: 37058196--37058345 Score: 201
Period size: 78 Copynumber: 1.9 Consensus size: 76
37058186 CAAGGTATAA
* * * *
37058196 AACCCAAACATAACACCAGCACGAAGCCTTCGGGACTTTCAACTCAGATATAATACCAGCACTAG
1 AACCCAAACATAACACCAGCACGAAGCCTGCGGGA-TTT-AACCCAGATATAATACCAGCACAAA
37058261 GCCTGCGGGATTT
64 GCCTGCGGGATTT
* * * * *
37058274 AACCCAGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACAAAGC
1 AACCCAAACATAACACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATACCAGCACAAAGC
37058339 CTGCGGG
66 CTGCGGG
37058346 TCTTTAAGCC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
76 29 0.46
77 3 0.05
78 31 0.49
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (76 bp):
AACCCAAACATAACACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAATACCAGCACAAAGC
CTGCGGGATTT
Found at i:37058372 original size:40 final size:38
Alignment explanation
Indices: 37058205--37058375 Score: 182
Period size: 38 Copynumber: 4.4 Consensus size: 38
37058195 AAACCCAAAC
* * * * *
37058205 ATAACACCAGCACGAAGCCTTCGGGACTTTCAACTCAGAT
1 ATAATACCAGCACAAAGCCTGCGGGA-TTT-AACCCGGAT
* * *
37058245 ATAATACCAGCACTAGGCCTGCGGGATTTAACCCAGAT
1 ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
*
37058283 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
* *
37058321 ATATTACCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATACCAGCACAAAGCCTGCGGG-ATTTAA-CCCGGAT
*
37058361 ACAAT-CTCAGCACAA
1 ATAATAC-CAGCACAA
37058376 TTTATTTTAT
Statistics
Matches: 115, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 66 0.57
39 9 0.08
40 40 0.35
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
Found at i:37058372 original size:78 final size:78
Alignment explanation
Indices: 37058210--37058373 Score: 199
Period size: 78 Copynumber: 2.1 Consensus size: 78
37058200 CAAACATAAC
* * * *
37058210 ACCAGCACGAAGCCTTCGGGACTTTCAACTCAGATATAATACCAGCACTAGGCCTGCGGGATTTA
1 ACCAGCACGAAGCCTGCGGGACTTTCAACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTA
*
37058275 ACCCAGATATAAT
66 ACCCAGATACAAT
* * *
37058288 ACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGATATATTACCAGCACAAAGCCTGCGGGTCTTT
1 ACCAGCACGAAGCCTGCGGGACTTTCAACCCAGATATAATACCAGCACAAAGCCTGCGGG-ATTT
*
37058351 AAGCCCGGATACAAT
65 AA-CCCAGATACAAT
37058366 -CTCAGCAC
1 AC-CAGCAC
37058374 AATTTATTTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
76 29 0.39
77 9 0.12
78 36 0.49
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (78 bp):
ACCAGCACGAAGCCTGCGGGACTTTCAACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTA
ACCCAGATACAAT
Found at i:37061864 original size:25 final size:25
Alignment explanation
Indices: 37061826--37061896 Score: 99
Period size: 25 Copynumber: 2.9 Consensus size: 25
37061816 CAACTCATCT
**
37061826 GAGCTTACTATTATTCAGCTCGAAG
1 GAGCTTACCGTTATTCAGCTCGAAG
37061851 GAGCTTACCGTTATTCAGCTCGAAG
1 GAGCTTACCGTTATTCAGCTCGAAG
* *
37061876 GAGCTTATCGTT-TACAGCTCG
1 GAGCTTACCGTTATTCAGCTCG
37061897 TATGAGCATA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 8 0.19
25 34 0.81
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAGCTCGAAG
Found at i:37074584 original size:11 final size:11
Alignment explanation
Indices: 37074568--37074602 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
37074558 CCTAAGGATG
37074568 AAATAAAAGTA
1 AAATAAAAGTA
*
37074579 AAATAAAAGAA
1 AAATAAAAGTA
37074590 AAATAAAA-TA
1 AAATAAAAGTA
37074600 AAA
1 AAA
37074603 AGTAGATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 4 0.18
11 18 0.82
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (11 bp):
AAATAAAAGTA
Found at i:37074596 original size:16 final size:16
Alignment explanation
Indices: 37074572--37074602 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37074562 AGGATGAAAT
*
37074572 AAAAGTAAAATAAAAG
1 AAAAATAAAATAAAAG
37074588 AAAAATAAAATAAAA
1 AAAAATAAAATAAAA
37074603 AGTAGATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.13
Consensus pattern (16 bp):
AAAAATAAAATAAAAG
Found at i:37074603 original size:11 final size:11
Alignment explanation
Indices: 37074568--37074651 Score: 50
Period size: 11 Copynumber: 7.7 Consensus size: 11
37074558 CCTAAGGATG
37074568 AAATAAAAGT-A
1 AAATAAAA-TAA
*
37074579 AAATAAAAGAA
1 AAATAAAATAA
37074590 AAATAAAATAA
1 AAATAAAATAA
* *
37074601 AAAGTAGATTAA
1 AAA-TAAAATAA
* *
37074613 AAA-AAGATAG
1 AAATAAAATAA
*
37074623 AAATAAAA-AC
1 AAATAAAATAA
*
37074633 ATA-AAAATAA
1 AAATAAAATAA
37074643 TAAATAAAA
1 -AAATAAAA
37074652 GTCTTTAAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 11
0.69 0.17 0.14
Matches are distributed among these distances:
9 4 0.07
10 10 0.19
11 27 0.50
12 13 0.24
ACGTcount: A:0.75, C:0.01, G:0.07, T:0.17
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:37074603 original size:28 final size:28
Alignment explanation
Indices: 37074567--37074631 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
37074557 ACCTAAGGAT
37074567 GAAAT-AAAAGTAAAATAAAAGAAAAATA
1 GAAATAAAAAGTAAAATAAAA-AAAAATA
* * *
37074595 -AAATAAAAAGTAGATTAAAAAAAGATA
1 GAAATAAAAAGTAAAATAAAAAAAAATA
37074622 GAAATAAAAA
1 GAAATAAAAA
37074632 CATAAAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 10 0.31
28 22 0.69
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (28 bp):
GAAATAAAAAGTAAAATAAAAAAAAATA
Found at i:37076275 original size:26 final size:26
Alignment explanation
Indices: 37076239--37076289 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
37076229 ATACAAATTG
37076239 ATAATAGGTTAGGTAAATGTTCCATT
1 ATAATAGGTTAGGTAAATGTTCCATT
*
37076265 ATAATGGGTTAGGTAAATGTTCCAT
1 ATAATAGGTTAGGTAAATGTTCCAT
37076290 GATGGGAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (26 bp):
ATAATAGGTTAGGTAAATGTTCCATT
Found at i:37077482 original size:8 final size:8
Alignment explanation
Indices: 37077469--37077498 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
37077459 AGATCGGCAC
37077469 AAGCCGAA
1 AAGCCGAA
37077477 AAGCCGAA
1 AAGCCGAA
*
37077485 ATGCCGAA
1 AAGCCGAA
37077493 AAGCCG
1 AAGCCG
37077499 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:37077969 original size:54 final size:54
Alignment explanation
Indices: 37077887--37078082 Score: 322
Period size: 54 Copynumber: 3.6 Consensus size: 54
37077877 GAGGAAGCAC
*
37077887 CCTGGTGGCTATGCTACAATTATCTGATCTGGTGGCTCTACCACATATATTTGT
1 CCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATTTGT
37077941 CCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATTTGT
1 CCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATTTGT
* *
37077995 CCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGT
1 CCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATTTGT
* * *
37078049 TCTGGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 CCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
37078083 ACTTCGTCAC
Statistics
Matches: 135, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
53 6 0.04
54 129 0.96
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (54 bp):
CCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATTTGT
Found at i:37078078 original size:32 final size:27
Alignment explanation
Indices: 37077907--37078082 Score: 200
Period size: 27 Copynumber: 6.5 Consensus size: 27
37077897 ATGCTACAAT
37077907 TATCTGATCTGGTGGCTCTACCACATA
1 TATCTGATCTGGTGGCTCTACCACATA
* * *
37077934 TATTTG-TCCTGGTGGCTATGCCACA-A
1 TATCTGAT-CTGGTGGCTCTACCACATA
37077960 TTATCTGATCTGGTGGCTCTACCACATA
1 -TATCTGATCTGGTGGCTCTACCACATA
* * *
37077988 TATTTG-TCCTGGTGGCTATGCCACA-A
1 TATCTGAT-CTGGTGGCTCTACCACATA
*
37078014 TTATCTGATCTGGTGGCTCTGCCACATA
1 -TATCTGATCTGGTGGCTCTACCACATA
*
37078042 TATCTGTTCTGGTGGCTCTACCACA-A
1 TATCTGATCTGGTGGCTCTACCACATA
37078068 TATCTGTATCTGGTG
1 TATCTG-ATCTGGTG
37078083 ACTTCGTCAC
Statistics
Matches: 126, Mismatches: 14, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
26 11 0.09
27 111 0.88
28 4 0.03
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
TATCTGATCTGGTGGCTCTACCACATA
Found at i:37078079 original size:27 final size:27
Alignment explanation
Indices: 37077888--37078100 Score: 197
Period size: 27 Copynumber: 7.9 Consensus size: 27
37077878 AGGAAGCACC
* *
37077888 CTGGTGGCTATGCTACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* * *
37077915 CTGGTGGCTCTACCACATATATTTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
37077942 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* * *
37077969 CTGGTGGCTCTACCACATATATTTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
37077996 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
37078023 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
37078050 CTGGTGGCTCTACCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
37078077 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
37078101 GCAGCTTCGC
Statistics
Matches: 152, Mismatches: 22, Indels: 24
0.77 0.11 0.12
Matches are distributed among these distances:
26 11 0.07
27 138 0.91
28 3 0.02
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:37083321 original size:25 final size:26
Alignment explanation
Indices: 37083293--37083347 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
37083283 TTGATAAAAT
37083293 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37083318 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37083344 TGAT
1 TGAT
37083348 GGGAATTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 7 0.24
26 22 0.76
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:37086540 original size:39 final size:40
Alignment explanation
Indices: 37086463--37086609 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
37086453 TAGCTCCTCG
* * *
37086463 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
37086503 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
37086542 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
37086582 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
37086610 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:37086620 original size:80 final size:80
Alignment explanation
Indices: 37086509--37086689 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
37086499 CTCATTCAAT
* * *
37086509 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
37086572 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
37086588 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
37086652 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
37086669 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
37086690 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:37086649 original size:40 final size:40
Alignment explanation
Indices: 37086506--37086689 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
37086496 TAACTCATTC
* *
37086506 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
37086546 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
37086586 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
37086626 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
37086667 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37086690 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:37094382 original size:39 final size:40
Alignment explanation
Indices: 37094305--37094451 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
37094295 TAGCTCCTCG
* * *
37094305 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
37094345 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
37094384 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
37094424 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
37094452 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:37094462 original size:80 final size:80
Alignment explanation
Indices: 37094351--37094531 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
37094341 CTCATTCAAT
* * *
37094351 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
37094414 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
37094430 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
37094494 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
37094511 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
37094532 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:37094491 original size:40 final size:40
Alignment explanation
Indices: 37094348--37094531 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
37094338 TAACTCATTC
* *
37094348 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
37094388 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
37094428 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
37094468 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
37094509 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37094532 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:37108522 original size:51 final size:49
Alignment explanation
Indices: 37108351--37108578 Score: 205
Period size: 50 Copynumber: 4.6 Consensus size: 49
37108341 ATCTGATACG
* * * **
37108351 CATAATAGCTTGCACTTAGTACTACACATGCGATCAA-CAATCCAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGATCAATC-ATTGAGTACA
* *
37108400 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTC-ATCATCTGA-TACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA--TCAATCAT-TGAGTACA
* * *
37108450 CGTAGTAGTCTGCACTTAGTACTACACATGTGATCGAAGTCATTGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGATC-AA-TCATTGAGTACA
* * *
37108501 CATAGTAGCCTGCACTTAGTACTACACATGCGGCTTAA-CAATATGA-TACA
1 CATAGTAGCCTGCACTTAGTACTACACATG-TGATCAATC-AT-TGAGTACA
* *
37108551 CATAGTAGCCTACAGTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
37108579 CGTGTATTCA
Statistics
Matches: 150, Mismatches: 18, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
48 2 0.01
49 29 0.19
50 73 0.49
51 44 0.29
52 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGATCAATCATTGAGTACA
Found at i:37108548 original size:101 final size:99
Alignment explanation
Indices: 37108344--37108578 Score: 258
Period size: 101 Copynumber: 2.4 Consensus size: 99
37108334 CGAAGCTATC
* * * *
37108344 TGATACGCATAATAGCTTGCACTTAGTACTACACATGCGATCAACAATCCAGTACACGTAGTAGC
1 TGATACACATAGTAGCCTGCACTTAGTACTACACATGCGATCAACAATCCAGTACACATAGTAGC
* * *
37108409 CTGCACTTAGTACTACACACGTGACCTCATCATC
66 CTGCACTTAGTACTACACACGCGACCTCAACATA
* * * ** *
37108443 TGATACACGTAGTAGTCTGCACTTAGTACTACACATGTGATCGAAGTC-ATTGAGTACGCATAGT
1 TGATACACATAGTAGCCTGCACTTAGTACTACACATGCGATC-AA--CAATCCAGTACACATAGT
* * *
37108507 AGCCTGCACTTAGTACTACACATGCG-GCTTAACAATA
63 AGCCTGCACTTAGTACTACACACGCGACCTCAAC-ATA
* *
37108544 TGATACACATAGTAGCCTACAGTTAGTACTACACA
1 TGATACACATAGTAGCCTGCACTTAGTACTACACA
37108579 CGTGTATTCA
Statistics
Matches: 112, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
99 36 0.32
100 6 0.05
101 69 0.62
102 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (99 bp):
TGATACACATAGTAGCCTGCACTTAGTACTACACATGCGATCAACAATCCAGTACACATAGTAGC
CTGCACTTAGTACTACACACGCGACCTCAACATA
Done.