Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 112 of 311
Found at i:37113879 original size:54 final size:54
Alignment explanation
Indices: 37113792--37113899 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
37113782 TCATTTAGCC
*
37113792 CATCTTCGAACCTCTTACACATAATAGCTTCGGTGGAAACACACTCCTGGGCAT
1 CATCCTCGAACCTCTTACACATAATAGCTTCGGTGGAAACACACTCCTGGGCAT
*
37113846 CATCCTCGAACCTCTTACACATAATAGCTTCGGTGGACACACACTCCTGGGCAT
1 CATCCTCGAACCTCTTACACATAATAGCTTCGGTGGAAACACACTCCTGGGCAT
37113900 ACTTGCTGAG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (54 bp):
CATCCTCGAACCTCTTACACATAATAGCTTCGGTGGAAACACACTCCTGGGCAT
Found at i:37115893 original size:49 final size:48
Alignment explanation
Indices: 37115831--37116002 Score: 193
Period size: 51 Copynumber: 3.5 Consensus size: 48
37115821 TACGCATAGC
* *
37115831 AGCCTGCAGTTAGTACTACACATGCGATTAACAATCCGATACACGTAGT
1 AGCCTGCACTTAGTACTACACATGCGATTAACAAT-TGATACACGTAGT
* * * * *
37115880 AGCCTGCACTTAGTACTACACACGTGATCGAAGTC-ATTGAGTACGCATAGT
1 AGCCTGCACTTAGTACTACACATGCGAT-TAA--CAATTGA-TACACGTAGT
*
37115931 AGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGATACACGTAGT
1 AGCCTGCACTTAGTACTACACATGCGA-TTAACAAT-TGATACACGTAGT
*
37115981 AGCCTACACTTAGTACTACACA
1 AGCCTGCACTTAGTACTACACA
37116003 CGTGTATTCA
Statistics
Matches: 102, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
49 26 0.25
50 34 0.33
51 40 0.39
52 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (48 bp):
AGCCTGCACTTAGTACTACACATGCGATTAACAATTGATACACGTAGT
Found at i:37115998 original size:101 final size:100
Alignment explanation
Indices: 37115821--37116006 Score: 309
Period size: 101 Copynumber: 1.9 Consensus size: 100
37115811 AGCTATCTGA
* * *
37115821 TACGCATAGCAGCCTGCAGTTAGTACTACACATGCGATTAACAATCCGATACACGTAGTAGCCTG
1 TACGCATAGCAGCCTGCACTTAGTACTACACATGCGATTAACAATACGATACACGTAGTAGCCTA
37115886 CACTTAGTACTACACACGTGATCGAAGTCATTGAG
66 CACTTAGTACTACACACGTGATCGAAGTCATTGAG
* * *
37115921 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGATACACGTAGTAGCCT
1 TACGCATAGCAGCCTGCACTTAGTACTACACATGCGA-TTAACAATACGATACACGTAGTAGCCT
37115986 ACACTTAGTACTACACACGTG
65 ACACTTAGTACTACACACGTG
37116007 TATTCACAAT
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
100 35 0.44
101 44 0.56
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (100 bp):
TACGCATAGCAGCCTGCACTTAGTACTACACATGCGATTAACAATACGATACACGTAGTAGCCTA
CACTTAGTACTACACACGTGATCGAAGTCATTGAG
Found at i:37117687 original size:28 final size:28
Alignment explanation
Indices: 37117647--37117700 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
37117637 TAATCCTGCC
37117647 ACAAGATGTGAGGTTTGCGGGAGTGCAT
1 ACAAGATGTGAGGTTTGCGGGAGTGCAT
37117675 ACAAGATGTGAGGTTTGCGGGAGTGC
1 ACAAGATGTGAGGTTTGCGGGAGTGC
37117701 TCAAGTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.24, C:0.11, G:0.41, T:0.24
Consensus pattern (28 bp):
ACAAGATGTGAGGTTTGCGGGAGTGCAT
Found at i:37124271 original size:47 final size:47
Alignment explanation
Indices: 37124209--37124332 Score: 152
Period size: 45 Copynumber: 2.7 Consensus size: 47
37124199 ATCCATAAAT
37124209 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
37124256 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
37124301 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
37124333 TCAACCATCC
Statistics
Matches: 68, Mismatches: 2, Indels: 13
0.82 0.02 0.16
Matches are distributed among these distances:
42 3 0.04
43 5 0.07
44 2 0.03
45 29 0.43
47 29 0.43
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:37124328 original size:92 final size:93
Alignment explanation
Indices: 37124163--37124332 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
37124153 GCCCCTAAGT
* * *
37124163 GAACTCAGACTCAACTCAACGAGCTCGGTCGTTCGTATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
37124228 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
37124256 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
37124320 CGAGTTCGGATGC
66 CGAGTTCGGATGC
37124333 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 34 0.48
93 37 0.52
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37131825 original size:91 final size:91
Alignment explanation
Indices: 37131713--37131880 Score: 284
Period size: 91 Copynumber: 1.8 Consensus size: 91
37131703 CCCCCTAAGT
*
37131713 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTC-ACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAT-AATGAACTCGACTCAACTCAAC
37131777 GAGTTCGGATGCCTAGTTACATCTCAC
65 GAGTTCGGATGCCTAGTTACATCTCAC
* *
37131804 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAATGAACTC-GACTCAACTCAAC
37131869 GAGTTCGGATGC
65 GAGTTCGGATGC
37131881 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
90 8 0.11
91 40 0.56
92 24 0.33
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAATGAACTCGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:37131868 original size:45 final size:46
Alignment explanation
Indices: 37131708--37131877 Score: 192
Period size: 45 Copynumber: 3.7 Consensus size: 46
37131698 GTAACCCCCC
* *
37131708 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
37131754 TAAATGAACTC--ACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
37131800 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
37131845 T-AGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37131878 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 8, Indels: 23
0.77 0.06 0.17
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 22 0.21
45 36 0.34
46 12 0.11
47 23 0.22
48 4 0.04
49 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:37132333 original size:30 final size:30
Alignment explanation
Indices: 37132299--37132358 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37132289 ATTTAATACG
37132299 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
37132329 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
37132359 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:37140231 original size:15 final size:15
Alignment explanation
Indices: 37140192--37140252 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
37140182 CAAGAAAACT
*
37140192 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
* *
37140207 -AGATAGAGAAACCCG
1 GA-ATAAAGAAACCCA
*
37140222 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
*
37140237 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
37140252 G
1 G
37140253 TCATAACTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
14 1 0.03
15 36 0.95
16 1 0.03
ACGTcount: A:0.56, C:0.15, G:0.18, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAACCCA
Found at i:37142819 original size:46 final size:45
Alignment explanation
Indices: 37142752--37142926 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
37142742 TGTAACCCGC
* *
37142752 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTT-GCAT
* *
37142798 CCATAAGTAAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--G-C--GTTGCAT
* * * *
37142848 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACGCTTGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCG-TTGCAT
* * *
37142891 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
37142927 ATGCCCAAGT
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
44 2 0.02
45 2 0.02
46 60 0.56
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (45 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTGCAT
Found at i:37142868 original size:93 final size:93
Alignment explanation
Indices: 37142759--37142931 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
37142749 CGCCCATAAG
* *
37142759 CGAACTCGGACTCAACTCAACGAGCTCGGGCG-TTCGCATCCATAAGTAAACTCAGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAGCTCGGACGCTT-GCATCCATAAGTAAACTCAGACTCAACTC
37142823 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* * * *
37142852 CGAACTCAGACTCAACTCAACGAGTTCGGACGCTTGCATCCGTAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACGCTTGCATCCATAAGTAAACTCAGACTCAACTCA
*
37142917 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
37142932 CAAGTATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACGCTTGCATCCATAAGTAAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:37142946 original size:46 final size:46
Alignment explanation
Indices: 37142807--37142946 Score: 126
Period size: 46 Copynumber: 3.0 Consensus size: 46
37142797 TCCATAAGTA
* * *
37142807 AACTCAGACTCAACTCAACGAGCTCGGATG-CCTAGTTACATCTCA-CG
1 AACTCAGACTCAACTCAACGAGTTCGGATGCCCTAG-T--ATCCCAGTG
* * * *
37142854 AACTCAGACTCAACTCAACGAGTTCGGA--CGCTTGCATCCGTAAGTG
1 AACTCAGACTCAACTCAACGAGTTCGGATGCCCTAGTATCC--CAGTG
* *
37142900 AACTCGGACTCAACTCAACGAGTTCGGATGCCCAAGTATCCCAGTG
1 AACTCAGACTCAACTCAACGAGTTCGGATGCCCTAGTATCCCAGTG
37142946 A
1 A
37142947 CATGTCACTT
Statistics
Matches: 74, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
43 3 0.04
45 1 0.01
46 36 0.49
47 27 0.36
48 7 0.09
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
AACTCAGACTCAACTCAACGAGTTCGGATGCCCTAGTATCCCAGTG
Found at i:37163501 original size:25 final size:24
Alignment explanation
Indices: 37163420--37163477 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
37163410 ATGCGGCGCA
** *
37163420 ATGTGTGCGAGATTACATGGCACT
1 ATGTGTGCGAGAAAACGTGGCACT
37163444 ATGTGTGCGAGAAAACGTGGCACT
1 ATGTGTGCGAGAAAACGTGGCACT
37163468 ATGTGTGCGA
1 ATGTGTGCGA
37163478 ATAAGTAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (24 bp):
ATGTGTGCGAGAAAACGTGGCACT
Found at i:37199532 original size:48 final size:48
Alignment explanation
Indices: 37199461--37199642 Score: 202
Period size: 48 Copynumber: 3.8 Consensus size: 48
37199451 GACAATTGGG
* **
37199461 TGATATGTGTGCTACTGTAAGACCATGTCTGGGACATGGCATCGGTGT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
37199509 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
** * * ** * * *
37199557 TGGGACGAGAACTAGTGTAAGACCATGTCTGGGAAATGGCATCAGCCT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * * *
37199605 CGACATGTGGGCCAGTGTAAGACTATGTCTGAGACATG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATG
37199643 ACATTGTCAA
Statistics
Matches: 111, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (48 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:37201718 original size:10 final size:10
Alignment explanation
Indices: 37201703--37201736 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
37201693 AACCAACCCA
37201703 TGTCCATCAT
1 TGTCCATCAT
37201713 TGTCCATCAT
1 TGTCCATCAT
37201723 T-TCCCATCAT
1 TGT-CCATCAT
37201733 TGTC
1 TGTC
37201737 TACCGCCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 1 0.05
10 20 0.91
11 1 0.05
ACGTcount: A:0.18, C:0.32, G:0.09, T:0.41
Consensus pattern (10 bp):
TGTCCATCAT
Found at i:37223327 original size:43 final size:43
Alignment explanation
Indices: 37223273--37223359 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
37223263 AAATTATATA
* * *
37223273 ATCTGAACTCATTGAGTTGGTTTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGGTCTAAGTTCATGATATACGTGAC
*
37223316 ATCTGAGCTCATTGAGTTGGTCTAAGTTCATGATATACGTGAC
1 ATCTGAACTCATTGAGTTGGTCTAAGTTCATGATATACGTGAC
37223359 A
1 A
37223360 CATGTAATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (43 bp):
ATCTGAACTCATTGAGTTGGTCTAAGTTCATGATATACGTGAC
Found at i:37230024 original size:46 final size:45
Alignment explanation
Indices: 37229974--37230139 Score: 165
Period size: 46 Copynumber: 3.6 Consensus size: 45
37229964 GCATCCAAGT
* *
37229974 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTTCGAAC
1 TCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAACGTCCGAAC
* * * *
37230020 TCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCATCCGAAC
1 TCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAA--A--CGTCCGAAC
* * * *
37230067 TCGTTGAGTTGAGTCCGAGTTCATTTATTTATGCAAACGCCCGAGC
1 TCGTTGAGTTGAGTCCGAGTTCACTTA-TGATGCAAACGTCCGAAC
*
37230113 TTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCGTTGAGTTGAGTCCGAGTTCACTTA
37230140 GGGGCGGGTT
Statistics
Matches: 98, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 53 0.54
47 28 0.29
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.33
Consensus pattern (45 bp):
TCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAACGTCCGAAC
Found at i:37233148 original size:27 final size:27
Alignment explanation
Indices: 37233117--37233198 Score: 137
Period size: 27 Copynumber: 3.0 Consensus size: 27
37233107 GTAGTTCAAA
*
37233117 GAATGATTTGATGGTAGTCCCAAAATG
1 GAATGATTTGATGGTAGTCCCAAAAGG
*
37233144 GAATGATTTGATGGTAGTCCCGAAAGG
1 GAATGATTTGATGGTAGTCCCAAAAGG
*
37233171 GAATGATTTGATGGTAGTTCCAAAAGG
1 GAATGATTTGATGGTAGTCCCAAAAGG
37233198 G
1 G
37233199 TATGTTAAAG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (27 bp):
GAATGATTTGATGGTAGTCCCAAAAGG
Found at i:37237691 original size:40 final size:40
Alignment explanation
Indices: 37237647--37237871 Score: 244
Period size: 40 Copynumber: 5.6 Consensus size: 40
37237637 GCTCCTCGTT
* *
37237647 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
37237687 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCA
*
37237727 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCA
* * *
37237767 CAAATGCCTTCGGGACTTAACCCGG-AATTAGTATCTCTCA
1 CAAATGCCTTCGGGACTTAACCCGGTTA-TAGTAACTCGCA
* ** * * * *
37237807 CAAAGGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGTTATAGTAAC-TCGCA
*
37237848 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
37237872 ACATCATTCA
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.02
40 147 0.90
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
Found at i:37237751 original size:80 final size:80
Alignment explanation
Indices: 37237647--37237872 Score: 287
Period size: 80 Copynumber: 2.8 Consensus size: 80
37237637 GCTCCTCGTT
*
37237647 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
37237712 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* *
37237727 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTATCTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
37237791 GAATTAGTATCTCTCA
65 GAATTAGTAACTCGCA
* * * * * * *
37237807 CAAAGGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC
37237870 GGA
64 GGA
37237873 CATCATTCAA
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
79 4 0.03
80 113 0.89
81 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:37237856 original size:120 final size:120
Alignment explanation
Indices: 37237647--37237872 Score: 287
Period size: 120 Copynumber: 1.9 Consensus size: 120
37237637 GCTCCTCGTT
* * *
37237647 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCACAAAGGCCTTCGGGACTTAACCCGG
* *
37237712 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* * * **
37237767 CAAATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCTCACAAAGGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAACCCGGATA-TAGTAACTCGCACAAAGGCCTTCGGGA-CTTAACCC
* * *
37237830 GGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
37237873 CATCATTCAA
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
119 4 0.04
120 78 0.87
121 8 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGGATATAGTAACTCGCACAAAGGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:37245657 original size:40 final size:39
Alignment explanation
Indices: 37245611--37245794 Score: 212
Period size: 40 Copynumber: 4.7 Consensus size: 39
37245601 AGCTCTCGTT
* *
37245611 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-AATAGTAACTCGCA
* *
37245651 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCA
* *
37245691 CAAATGCCTTCGGGACTTA-ACCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCA
* * * *
37245730 CAAATGCCTTC-GGATCTTAGTCCGGAATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATAGTAAC-TCGCA
37245770 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37245795 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
38 3 0.02
39 51 0.41
40 71 0.57
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCA
Found at i:37245755 original size:79 final size:80
Alignment explanation
Indices: 37245611--37245794 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
37245601 AGCTCTCGTT
* * *
37245611 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
37245676 ATTTAGTAAC-TCGCA
66 A-ATAGTAACTTAGCA
* **
37245691 CAAATGCCTTCGGGACTTA-ACCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGACCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
37245753 GGAATGGTCACTTAGCA
64 GGAATAGTAACTTAGCA
*
37245770 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGACCGGA
37245795 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 23 0.26
79 48 0.54
80 18 0.20
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATAGTAACTTAGCA
Found at i:37259970 original size:27 final size:27
Alignment explanation
Indices: 37259914--37260065 Score: 117
Period size: 27 Copynumber: 5.6 Consensus size: 27
37259904 CCCGCATTCC
* * * *
37259914 AAAATTAACGAAA-AACCCTCGATTTCA
1 AAAATTACCGAAATACCCCTAG-TTTAA
*
37259941 AAAATTTCCGAAATACCCCTAGTTTAA
1 AAAATTACCGAAATACCCCTAGTTTAA
* * *
37259968 AAAATTATCGAAATACCCCTGGTTTGA
1 AAAATTACCGAAATACCCCTAGTTTAA
* * * *
37259995 AAAATTACAGAAATACCCCCAATTTAG
1 AAAATTACCGAAATACCCCTAGTTTAA
* * * * *
37260022 AAAATTACCAAAATAGCCCTGGTTCAT
1 AAAATTACCGAAATACCCCTAGTTTAA
**
37260049 AAAATTACTAAAATACC
1 AAAATTACCGAAATACC
37260066 TTGGTAGTGT
Statistics
Matches: 98, Mismatches: 26, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
27 92 0.94
28 6 0.06
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.26
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTAGTTTAA
Found at i:37259998 original size:54 final size:54
Alignment explanation
Indices: 37259914--37260065 Score: 148
Period size: 54 Copynumber: 2.8 Consensus size: 54
37259904 CCCGCATTCC
* * * * *
37259914 AAAATTAACGAAA-AACCCTCGATTTCAAAAATTTCCGAAATACCCCTAGTTTAA
1 AAAATTAACGAAATAACCCT-GGTTTCAAAAATTACAGAAATACCCCCAATTTAA
* * * *
37259968 AAAATTATCGAAATACCCCTGGTTTGAAAAATTACAGAAATACCCCCAATTTAG
1 AAAATTAACGAAATAACCCTGGTTTCAAAAATTACAGAAATACCCCCAATTTAA
* * *
37260022 AAAATTACCAAAATAGCCCTGG-TTCATAAAATTACTA-AAATACC
1 AAAATTAACGAAATAACCCTGGTTTCA-AAAATTAC-AGAAATACC
37260066 TTGGTAGTGT
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
53 3 0.04
54 73 0.89
55 6 0.07
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.26
Consensus pattern (54 bp):
AAAATTAACGAAATAACCCTGGTTTCAAAAATTACAGAAATACCCCCAATTTAA
Found at i:37260090 original size:27 final size:26
Alignment explanation
Indices: 37260060--37260119 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 26
37260050 AAATTACTAA
37260060 AATACCTTGGTA-GTGTAAAAAGACCGT
1 AATACCTT-GTATG-GTAAAAAGACCGT
*
37260087 AATACCCTTGTATGGTAAAATGACCGT
1 AATA-CCTTGTATGGTAAAAAGACCGT
37260114 AATACC
1 AATACC
37260120 CCTATAGGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 2 0.07
27 23 0.77
28 5 0.17
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (26 bp):
AATACCTTGTATGGTAAAAAGACCGT
Found at i:37260120 original size:27 final size:27
Alignment explanation
Indices: 37260074--37260157 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
37260064 CCTTGGTAGT
* * * *
37260074 GTAAAAAGACCGTAATACCCTTGTATG
1 GTAAAATGACCGTAATACCCCTATAGG
37260101 GTAAAATGACCGTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * *
37260128 GTAAAATGACTGTAATGCTCCTATATG
1 GTAAAATGACCGTAATACCCCTATAGG
37260155 GTA
1 GTA
37260158 CAAAGACGAT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTATAGG
Found at i:37266256 original size:47 final size:47
Alignment explanation
Indices: 37266187--37266312 Score: 225
Period size: 47 Copynumber: 2.7 Consensus size: 47
37266177 TTTTATGTGT
*
37266187 ATATATGCGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
*
37266234 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
*
37266281 ATATATGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
37266313 AATACGTATG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
Found at i:37266310 original size:94 final size:95
Alignment explanation
Indices: 37266187--37266553 Score: 288
Period size: 97 Copynumber: 3.8 Consensus size: 95
37266177 TTTTATGTGT
* * *
37266187 ATATATGCGATAAGGCCGAATGGCCAATGTGATGA-ATATGA-ACATGCATATATGTGTTAAGGC
1 ATATATGTGATAAGGCCGAATGGCTAATGTGAT-ACATATGAGACAT--ATATATGTG-TAAAGC
*
37266250 CGAATGGCCAATGTGATG-A-ATATGA-ACATGC
62 CGAATGGCCAATGTGAAGTATATATGAGACATGC
* *
37266281 ATATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATATATATGTGTAAAGCCG
1 ATATATGTGATAAGGCCGAATGGCTAATGTG--ATACATATGAGACATATATATGTGTAAAGCCG
* * *
37266346 AATGGCTAATGTGAAGTATGTATGAGATATGC
64 AATGGCCAATGTGAAGTATATATGAGACATGC
* * *
37266378 --ATATGTGGTAAAGCCGAATGGCTAATGTGA-A-ATATGTATGAGATATGCATATGTGGTAAAG
1 ATATATGTGATAAGGCCGAATGGCTAATGTGATACATATG-A-GACATAT--ATATGT-GTAAAG
* * * *
37266439 CCGAATGGTCAATGTGAATATATATATGAGATATGT
61 CCGAATGGCCAATGTGAA-GTATATATGAGACATGC
* * * * ** * *
37266475 AAATATG-G-TAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
1 ATATATGTGATAAGGCCGAATGGCTAATGTG--ATACATATGAGACATATATATGT-GTAAAGCC
* *
37266538 GAATGGCTAGTGTGAA
63 GAATGGCCAATGTGAA
37266554 ATATGTAGGC
Statistics
Matches: 228, Mismatches: 26, Indels: 35
0.79 0.09 0.12
Matches are distributed among these distances:
91 4 0.02
92 2 0.01
93 7 0.03
94 50 0.22
95 44 0.19
96 34 0.15
97 69 0.30
98 1 0.00
99 11 0.05
100 2 0.01
101 4 0.02
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (95 bp):
ATATATGTGATAAGGCCGAATGGCTAATGTGATACATATGAGACATATATATGTGTAAAGCCGAA
TGGCCAATGTGAAGTATATATGAGACATGC
Found at i:37266407 original size:48 final size:48
Alignment explanation
Indices: 37266283--37266560 Score: 398
Period size: 48 Copynumber: 5.8 Consensus size: 48
37266273 GAACATGCAT
* * * **
37266283 ATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATAT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
*
37266331 ATATGT-GTAAAGCCGAATGGCTAATGTGAAGTATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
37266378 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
37266426 ATATGTGGTAAAGCCGAATGG-TCAATGTGAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAA-ATATGTATGAGATATGC
* * * * *
37266475 AAATATGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
*
37266523 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
37266561 GGCGATGTGC
Statistics
Matches: 209, Mismatches: 17, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
47 42 0.20
48 126 0.60
49 40 0.19
50 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:37266504 original size:145 final size:143
Alignment explanation
Indices: 37266283--37266560 Score: 416
Period size: 145 Copynumber: 1.9 Consensus size: 143
37266273 GAACATGCAT
* * * *
37266283 ATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATATATATGTGTAAAGCCGAA
1 ATATGTGATAAAGCCGAATGGCTAATGTGAAATACATATGAGATATAAATATGTGTAAAGCCAAA
*
37266348 TGGCTAATGTGAAGTATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
66 TGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
37266413 GTATGAGATATGC
131 GTATGAGATATGC
* *
37266426 ATATGTGGTAAAGCCGAATGG-TCAATGTGAATATATATATGAGATATGTAAATATG-GTAAAGC
1 ATATGTGATAAAGCCGAATGGCT-AATGTGAA-ATACATATGAGATA--TAAATATGTGTAAAGC
* * *
37266489 CAAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
62 CAAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAA
37266554 ATATGTA
127 ATATGTA
37266561 GGCGATGTGC
Statistics
Matches: 121, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
142 1 0.01
143 27 0.22
144 12 0.10
145 74 0.61
146 7 0.06
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (143 bp):
ATATGTGATAAAGCCGAATGGCTAATGTGAAATACATATGAGATATAAATATGTGTAAAGCCAAA
TGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
GTATGAGATATGC
Found at i:37266506 original size:97 final size:96
Alignment explanation
Indices: 37266235--37266557 Score: 397
Period size: 97 Copynumber: 3.4 Consensus size: 96
37266225 TGAACATGCA
* * * * * *
37266235 TATATGTGTTAAGGCCGAATGGCCAATGTG--ATGA-ATATGA-ACATGCATATATGTGATAAGG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-ATATATGAGATATGCAAATATG-G-TAAAG
* * *
37266296 CCGAATGGCTAATGTGAAATACGTATGAGATATA
63 CCAAATGGCTAATGTGAAATATGTATGAGATATG
* * * * *
37266330 TATATGT-GTAAAGCCGAATGGCTAATGTGAAGTATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGCAAATATGGTAAAGCCA
37266394 AATGGCTAATGTGAAATATGTATGAGATATG
66 AATGGCTAATGTGAAATATGTATGAGATATG
* *
37266425 CATATGTGGTAAAGCCGAATGG-TCAATGTGAATATATATATGAGATATGTAAATATGGTAAAGC
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAA-ATATATATGAGATATGCAAATATGGTAAAGC
*
37266489 CAAATGGCTAGTGTGAAATATGTATGAGATATG
64 CAAATGGCTAATGTGAAATATGTATGAGATATG
*
37266522 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
37266558 GTAGGCGATG
Statistics
Matches: 200, Mismatches: 20, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
94 19 0.09
95 51 0.25
96 33 0.17
97 96 0.48
98 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (96 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGCAAATATGGTAAAGCCA
AATGGCTAATGTGAAATATGTATGAGATATG
Found at i:37266794 original size:37 final size:37
Alignment explanation
Indices: 37266706--37266813 Score: 182
Period size: 36 Copynumber: 2.9 Consensus size: 37
37266696 GGAAATATAT
*
37266706 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
37266743 T-CGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
37266779 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
37266814 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 35 0.52
37 32 0.48
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:37268209 original size:79 final size:79
Alignment explanation
Indices: 37268076--37268500 Score: 647
Period size: 79 Copynumber: 5.4 Consensus size: 79
37268066 GAGAATTGAG
* * * *
37268076 AGTGATATATCCGGGCTAAGTCCCGTAGGGCATTCGTGCTAGTGATATAT-CGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
37268140 AAGAGCATTCATGCT
65 AAGAGCATTCATGCT
37268155 AGTGATGTATCCGGACTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGT-CCGA
1 AGTGATGTATCCGGACTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
37268219 AGAGCATTCATGCT
66 AGAGCATTCATGCT
37268233 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAG-TCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
37268298 AAGAGCATTCATGCT
65 AAGAGCATTCATGCT
* * *
37268313 AGTGATGTATCCGGACTAAGTTCGAAGAGCATTCATGCTAGTGATATATCCGGGATAAGTCCCGA
1 AGTGATGTATCCGGACTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
37268378 AGAGCATTCATGCT
66 AGAGCATTCATGCT
* * * **
37268392 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCTGTGCTAAACCCCG
1 AGTGATGTATCCGGACTAAG-TCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
37268457 AAGAGCATTCATGCT
65 AAGAGCATTCATGCT
* * * * *
37268472 GGTGTTATATCCGGGCTAGGTCCCGAAGA
1 AGTGATGTATCCGGACTAAGT-CCGAAGA
37268501 ACAATCATGC
Statistics
Matches: 322, Mismatches: 19, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
78 64 0.20
79 146 0.45
80 112 0.35
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
AGTGATGTATCCGGACTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
AGAGCATTCATGCT
Found at i:37268273 original size:40 final size:40
Alignment explanation
Indices: 37268076--37268516 Score: 570
Period size: 40 Copynumber: 11.1 Consensus size: 40
37268066 GAGAATTGAG
* * * *
37268076 AGTGATATATCCGGGCTAAGTCCCGTAGGGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
37268116 AGTGATATAT-CGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* *
37268155 AGTGATGTATCCGGACTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
37268194 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * *
37268233 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
37268273 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* *
37268313 AGTGATGTATCCGGACTAAGT-TCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
37268352 AGTGATATATCCGGGA-TAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCC-GGACTAAGTCCCGAAGAGCATTCATGCT
* ** *
37268392 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* **
37268432 AGTGATATATCTGTG-CTAAACCCCGAAGAGCATTCATGCT
1 AGTGATATATCCG-GACTAAGTCCCGAAGAGCATTCATGCT
* * * * * *
37268472 GGTGTTATATCCGGGCTAGGTCCCGAAGAACAATCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
37268512 GGTGA
1 AGTGA
37268517 CGTGTATTCG
Statistics
Matches: 353, Mismatches: 41, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
39 144 0.41
40 208 0.59
41 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
Found at i:37268342 original size:119 final size:118
Alignment explanation
Indices: 37268076--37268516 Score: 598
Period size: 119 Copynumber: 3.7 Consensus size: 118
37268066 GAGAATTGAG
* * * *
37268076 AGTGATATATCCGGGCTAAGTCCCGTAGGGCATTCGTGCTAGTGATATAT-CGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCG
37268140 AAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCGAAGAGCATTCGTGCT
65 AAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCGAAGAGCATTCGTGCT
* *
37268194 AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCGA
1 AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGA
* * * *
37268259 AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
66 AGAGCATTCATGCTAGTGATGTATCCGGACTAAGT-CCGAAGAGCATTCGTGCT
* * *
37268313 AGTGATGTATCCGGACTAAGTTCGAAGAGCATTCATGCTAGTGATATATCCGGGA-TAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATATATCC-GGACTAAGTCCCG
*
37268377 AAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
65 AAGAGCATTCATGCTAGTGATGTATCCGGACTAAG-TCCGAAGAGCATTCGTGCT
* * ** * * * *
37268432 AGTGATATATCTGTGCTAAACCCCGAAGAGCATTCATGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATATATCCGGGCT-AAGTCCGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCG
* * *
37268497 AAGAACAATCATGCTGGTGA
65 AAGAGCATTCATGCTAGTGA
37268517 CGTGTATTCG
Statistics
Matches: 283, Mismatches: 34, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
117 24 0.08
118 66 0.23
119 135 0.48
120 58 0.20
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (118 bp):
AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGA
AGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCGAAGAGCATTCGTGCT
Found at i:37268721 original size:25 final size:25
Alignment explanation
Indices: 37268680--37268730 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
37268670 GTGTAATAAC
37268680 GAATGAATAAGAGCACTATGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
* *
37268705 GAATG-ATTAGAGACACTGTGTGTGT
1 GAATGAATAAGAG-CACTATGTGTGT
37268730 G
1 G
37268731 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (25 bp):
GAATGAATAAGAGCACTATGTGTGT
Found at i:37272643 original size:47 final size:47
Alignment explanation
Indices: 37272574--37272699 Score: 207
Period size: 47 Copynumber: 2.7 Consensus size: 47
37272564 TTTTATGTGT
*
37272574 ATATATGCGATAAGGCCGAATGGCCAATGTGATGAATATGAACAAGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACAAGC
* * *
37272621 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATATGAACATGG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACAAGC
*
37272668 ATATATGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
37272700 AATACGTATG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACAAGC
Found at i:37272738 original size:48 final size:48
Alignment explanation
Indices: 37272669--37272949 Score: 411
Period size: 48 Copynumber: 5.8 Consensus size: 48
37272659 TGAACATGGA
* * * *
37272669 TATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
37272717 TATATGTAGTAAAGCCGAATGGCTAATGTGAAGTATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
37272765 CATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
37272813 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* * *
37272863 TAAATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
37272911 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
37272950 GGCGATGTGC
Statistics
Matches: 212, Mismatches: 17, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
47 1 0.00
48 167 0.79
49 4 0.02
50 39 0.18
51 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:37272894 original size:146 final size:144
Alignment explanation
Indices: 37272670--37272949 Score: 418
Period size: 146 Copynumber: 1.9 Consensus size: 144
37272660 GAACATGGAT
* * * *
37272670 ATATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATATATATGTAGTAAAGCCGA
1 ATATGTGATAAAGCCGAATGGCTAATGTGAAATACATATGAGATATATAAATGTAGTAAAGCCAA
*
37272735 ATGGCTAATGTGAAGTATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
66 ATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
37272800 TGTATGAGATATGC
131 TGTATGAGATATGC
* * * *
37272814 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTAAATGTGGTAAAGC
1 ATATGTGATAAAGCCGAATGGCT-AATGTG-AA-ATACATATGAGATATATAAATGTAGTAAAGC
* * *
37272878 CAAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
63 CAAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAA
37272943 ATATGTA
128 ATATGTA
37272950 GGCGATGTGC
Statistics
Matches: 121, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
143 1 0.01
144 25 0.21
145 2 0.02
146 93 0.77
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (144 bp):
ATATGTGATAAAGCCGAATGGCTAATGTGAAATACATATGAGATATATAAATGTAGTAAAGCCAA
ATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
TGTATGAGATATGC
Found at i:37272895 original size:98 final size:98
Alignment explanation
Indices: 37272672--37272946 Score: 403
Period size: 98 Copynumber: 2.8 Consensus size: 98
37272662 ACATGGATAT
* * * * *
37272672 ATGTGATAAGGCCGAATGGCTAATGTGAAATACGTATGAGATATATATATGTAGTAAAGCCGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
* * *
37272737 GGCTAATGTG-AA-GTATGTATGAGATATGCAT
66 GGCTAATGTGAAATATATATATGAGATATGCAA
*
37272768 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
*
37272833 GG-TCAATGTGAAATATATATATGAGATATGTAA
66 GGCT-AATGTGAAATATATATATGAGATATGCAA
* *
37272866 ATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
1 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
*
37272931 GGCTAGTGTGAAATAT
66 GGCTAATGTGAAATAT
37272947 GTAGGCGATG
Statistics
Matches: 161, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
95 1 0.01
96 67 0.42
97 2 0.01
98 90 0.56
99 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.29
Consensus pattern (98 bp):
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
GGCTAATGTGAAATATATATATGAGATATGCAA
Found at i:37273204 original size:37 final size:37
Alignment explanation
Indices: 37273096--37273204 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
37273086 GGAAATATAT
* *
37273096 TCCGGGTAAGACCCGATGACTACGTGCGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
37273133 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
37273170 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
37273205 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:37275608 original size:33 final size:34
Alignment explanation
Indices: 37275570--37275655 Score: 102
Period size: 33 Copynumber: 2.5 Consensus size: 34
37275560 ATACTCTATG
*
37275570 TTTGGTGTGTTGGTTGGATTAGCTCTTATGAGCA
1 TTTGGTGTGTTGGTTGGATTAGCTCGTATGAGCA
** * *
37275604 -TTGGTGTGTTGGAGGGATTGGCTCGTGTGAGCA
1 TTTGGTGTGTTGGTTGGATTAGCTCGTATGAGCA
*
37275637 TTTGGTGTATTTGGTTGGA
1 TTTGGTGT-GTTGGTTGGA
37275656 ATGATAATGT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
33 28 0.67
34 7 0.17
35 7 0.17
ACGTcount: A:0.13, C:0.07, G:0.38, T:0.42
Consensus pattern (34 bp):
TTTGGTGTGTTGGTTGGATTAGCTCGTATGAGCA
Found at i:37277954 original size:44 final size:43
Alignment explanation
Indices: 37277891--37278040 Score: 157
Period size: 42 Copynumber: 3.5 Consensus size: 43
37277881 TATGTGTTTT
**
37277891 CGTGTAAGACCACATCTGGGACACTGGCATCGACTTATGATTTA
1 CGTGTAAGACCATGTCTGGGACACTGGCATCGA-TTATGATTTA
* *
37277935 CGTGTAAGACCATGTCTGGGACATCT-GAATC-ATAATTGATTT-
1 CGTGTAAGACCATGTCTGGGACA-CTGGCATCGATTA-TGATTTA
* * *
37277977 CGTGTAAGACCCTGTC-GGGACAGTGGCATCGATATTTG-TTTA
1 CGTGTAAGACCATGTCTGGGACACTGGCATCGAT-TATGATTTA
*
37278019 CATGTAAGACCATGTCTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
37278041 GTTGGCATTG
Statistics
Matches: 88, Mismatches: 11, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
40 1 0.01
41 13 0.15
42 35 0.40
43 12 0.14
44 25 0.28
45 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACACTGGCATCGATTATGATTTA
Found at i:37282886 original size:48 final size:48
Alignment explanation
Indices: 37282828--37283080 Score: 289
Period size: 48 Copynumber: 5.3 Consensus size: 48
37282818 ATGTTAACCT
* *
37282828 GCACAAATAGTGCTTTAGTAATTCACATACATATTGACATTCAAATCC
1 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCC
* * ** * * *
37282876 GCACACATAGTGCCATA-TAAATC-CGCACATATAATGCCATACAAATTC
1 GCACACATAGTGCCTTAGTAATTCACATACATAT--TGACATTCAAATCC
37282924 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCC
1 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCC
* * ** * * *
37282972 GCACACATAGTGCCATA-TAAATC-CGCACATATAGTGCCATACAAATTC
1 GCACACATAGTGCCTTAGTAATTCACATACATAT--TGACATTCAAATCC
37283020 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCC
1 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCC
*
37283068 ACACACATAGTGC
1 GCACACATAGTGC
37283081 TATTCAAATT
Statistics
Matches: 166, Mismatches: 31, Indels: 16
0.78 0.15 0.08
Matches are distributed among these distances:
46 14 0.08
47 10 0.06
48 118 0.71
49 10 0.06
50 14 0.08
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.26
Consensus pattern (48 bp):
GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCC
Found at i:37282897 original size:24 final size:24
Alignment explanation
Indices: 37282870--37283106 Score: 187
Period size: 24 Copynumber: 9.9 Consensus size: 24
37282860 ATTGACATTC
37282870 AAATCCGCACACATAGTGCCATAT
1 AAATCCGCACACATAGTGCCATAT
* * *
37282894 AAATCCGCACATATAATGCCATAC
1 AAATCCGCACACATAGTGCCATAT
* *
37282918 AAATTCGCACACATAGTGCCTTAGT
1 AAATCCGCACACATAGTGCCATA-T
* * * * *
37282943 -AATTCACATACATATTGACAT-T
1 AAATCCGCACACATAGTGCCATAT
37282965 CAAATCCGCACACATAGTGCCATAT
1 -AAATCCGCACACATAGTGCCATAT
* *
37282990 AAATCCGCACATATAGTGCCATAC
1 AAATCCGCACACATAGTGCCATAT
* *
37283014 AAATTCGCACACATAGTGCCTTAGT
1 AAATCCGCACACATAGTGCCATA-T
* * * * *
37283039 -AATTCACATACATATTGACAT-T
1 AAATCCGCACACATAGTGCCATAT
* *
37283061 CAAATCCACACACATAGTGCTAT-T
1 -AAATCCGCACACATAGTGCCATAT
**
37283085 CAAATTTGCACACATAGTGCCA
1 -AAATCCGCACACATAGTGCCA
37283107 AAGTCATTTC
Statistics
Matches: 168, Mismatches: 38, Indels: 14
0.76 0.17 0.06
Matches are distributed among these distances:
22 2 0.01
24 165 0.98
25 1 0.01
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCCATAT
Found at i:37283096 original size:96 final size:96
Alignment explanation
Indices: 37282828--37283106 Score: 470
Period size: 96 Copynumber: 2.9 Consensus size: 96
37282818 ATGTTAACCT
* *
37282828 GCACAAATAGTGCTTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
1 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
*
37282893 TAAATCCGCACATATAATGCCATACAAATTC
66 TAAATCCGCACATATAGTGCCATACAAATTC
37282924 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
1 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
37282989 TAAATCCGCACATATAGTGCCATACAAATTC
66 TAAATCCGCACATATAGTGCCATACAAATTC
* *
37283020 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCACACACATAGTGCTAT-
1 GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
** *
37283084 TCAAATTTGCACACATAGTGCCA
66 T-AAATCCGCACATATAGTGCCA
37283107 AAGTCATTTC
Statistics
Matches: 174, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
95 1 0.01
96 173 0.99
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (96 bp):
GCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATA
TAAATCCGCACATATAGTGCCATACAAATTC
Found at i:37286510 original size:40 final size:40
Alignment explanation
Indices: 37286426--37286609 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
37286416 TTGAATGCTG
* * * *
37286426 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
37286465 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
37286506 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
37286546 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
37286586 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37286610 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:37286563 original size:80 final size:81
Alignment explanation
Indices: 37286426--37286606 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
37286416 TTGAATGCTG
* * *
37286426 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
37286490 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
37286506 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
37286567 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
37286586 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
37286607 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:37286630 original size:39 final size:38
Alignment explanation
Indices: 37286507--37286656 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
37286497 GTTATTAATT
* ** * *
37286507 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
37286547 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
37286586 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
37286626 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
37286657 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:37293900 original size:48 final size:48
Alignment explanation
Indices: 37293845--37294149 Score: 330
Period size: 48 Copynumber: 6.4 Consensus size: 48
37293835 CCATGTTAAC
* *
37293845 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATAGTAATTCACACACATATTGACATTCAAAT
* * * *
37293893 CCGCACACATAGTGCCATA-TAAATC-CGCACATATAGTGCCATACAAAT
1 CCGCACACATAGTGCCATAGTAATTCACACACATAT--TGACATTCAAAT
* * *
37293941 TCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATAGTAATTCACACACATATTGACATTCAAAT
* * * *
37293989 CCGCACACATAGTGCCATA-TAAATC-CGCACATATAGTGCCATACAAAT
1 CCGCACACATAGTGCCATAGTAATTCACACACATAT--TGACATTCAAAT
** * *
37294037 TTGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATAGTAATTCACACACATATTGACATTCAAAT
** ** * *
37294085 CCGCACACATAGTGCCATACAAATTCGTACACATAGTGCCATTCAAAT
1 CCGCACACATAGTGCCATAGTAATTCACACACATATTGACATTCAAAT
*
37294133 TCGCACACATAGTGCCA
1 CCGCACACATAGTGCCA
37294150 AAGTCATTTC
Statistics
Matches: 210, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
46 14 0.07
47 10 0.05
48 162 0.77
49 10 0.05
50 14 0.07
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.26
Consensus pattern (48 bp):
CCGCACACATAGTGCCATAGTAATTCACACACATATTGACATTCAAAT
Found at i:37293962 original size:96 final size:96
Alignment explanation
Indices: 37293846--37294148 Score: 552
Period size: 96 Copynumber: 3.2 Consensus size: 96
37293836 CATGTTAACC
37293846 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
37293911 ATAAATCCGCACATATAGTGCCATACAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
37293942 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
37294007 ATAAATCCGCACATATAGTGCCATACAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
*
37294038 TGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
* * * * *
37294103 ACAAATTCGTACACATAGTGCCATTCAAATT
66 ATAAATCCGCACATATAGTGCCATACAAATT
37294134 CGCACACATAGTGCC
1 CGCACACATAGTGCC
37294149 AAAGTCATTT
Statistics
Matches: 200, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 200 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (96 bp):
CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
ATAAATCCGCACATATAGTGCCATACAAATT
Found at i:37294149 original size:24 final size:24
Alignment explanation
Indices: 37293817--37294149 Score: 270
Period size: 24 Copynumber: 13.9 Consensus size: 24
37293807 TCAAGCAAGG
*
37293817 AAATTCGCACCCATAGTGCCATGT-
1 AAATTCGCACACATAGTGCCAT-TC
* **
37293841 TAACCCGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
37293863 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
*
37293889 AAATCCGCACACATAGTGCCATAT-
1 AAATTCGCACACATAGTGCCAT-TC
* * *
37293913 AAATCCGCACATATAGTGCCATAC
1 AAATTCGCACACATAGTGCCATTC
37293937 AAATTCGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
37293959 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
*
37293985 AAATCCGCACACATAGTGCCATAT-
1 AAATTCGCACACATAGTGCCAT-TC
* * *
37294009 AAATCCGCACATATAGTGCCATAC
1 AAATTCGCACACATAGTGCCATTC
*
37294033 AAATTTGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
37294055 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
* *
37294081 AAATCCGCACACATAGTGCCATAC
1 AAATTCGCACACATAGTGCCATTC
*
37294105 AAATTCGTACACATAGTGCCATTC
1 AAATTCGCACACATAGTGCCATTC
37294129 AAATTCGCACACATAGTGCCA
1 AAATTCGCACACATAGTGCCA
37294150 AAGTCATTTC
Statistics
Matches: 242, Mismatches: 51, Indels: 32
0.74 0.16 0.10
Matches are distributed among these distances:
22 3 0.01
23 3 0.01
24 225 0.93
25 8 0.03
26 3 0.01
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.26
Consensus pattern (24 bp):
AAATTCGCACACATAGTGCCATTC
Found at i:37294597 original size:16 final size:16
Alignment explanation
Indices: 37294576--37294607 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37294566 ATTACTTTAA
37294576 ATAAACACACATATAT
1 ATAAACACACATATAT
*
37294592 ATAAACACATATATAT
1 ATAAACACACATATAT
37294608 TTTTGTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAACACACATATAT
Found at i:37305899 original size:35 final size:36
Alignment explanation
Indices: 37305855--37305979 Score: 132
Period size: 37 Copynumber: 3.5 Consensus size: 36
37305845 ACATTGATAT
37305855 TCCAACC-AAAACACACCAGATGCTCATAGAGCTAA
1 TCCAACCGAAAACACACCAGATGCTCATAGAGCTAA
* * * *
37305890 TCCATCC-AAAACACATCAGATGCTCATACGAGCCAG
1 TCCAACCGAAAACACACCAGATGCTCATA-GAGCTAA
* *
37305926 TCCACCCGATAACACACCA-ATGGCTC-TGAAGAGCTAA
1 TCCAACCGAAAACACACCAGAT-GCTCAT--AGAGCTAA
37305963 TCCAACCGAAAACACAC
1 TCCAACCGAAAACACAC
37305980 TAAAACAAGG
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
35 26 0.35
36 14 0.19
37 33 0.45
38 1 0.01
ACGTcount: A:0.39, C:0.34, G:0.13, T:0.14
Consensus pattern (36 bp):
TCCAACCGAAAACACACCAGATGCTCATAGAGCTAA
Found at i:37310297 original size:26 final size:25
Alignment explanation
Indices: 37310242--37310297 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 25
37310232 TCATAATTAT
* *
37310242 ATATATTATATAATAAGACCCATGC
1 ATATATTACATAATAAGACCCACGC
* * *
37310267 TTATATGTACATAGTAAGATCCACGC
1 ATATAT-TACATAATAAGACCCACGC
37310293 ATATA
1 ATATA
37310298 ATATAATTTA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (25 bp):
ATATATTACATAATAAGACCCACGC
Found at i:37312901 original size:79 final size:81
Alignment explanation
Indices: 37312801--37312985 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
37312791 GATCCTCGTT
* *
37312801 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGACC
* *
37312863 TGGATTTAGTAAC-TCGCA
64 -GGATATAGTAACTTAGCA
* *
37312881 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGG
* *
37312945 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
37312961 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37312986 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 3 0.03
79 53 0.58
80 36 0.39
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGG
ATATAGTAACTTAGCA
Found at i:37312985 original size:40 final size:40
Alignment explanation
Indices: 37312801--37312985 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
37312791 GATCCTCGTT
* *
37312801 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
37312841 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
37312881 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
37312920 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37312961 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37312986 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37320862 original size:79 final size:80
Alignment explanation
Indices: 37320694--37320878 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
37320684 GCTCCTCGTT
* * *
37320694 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
37320758 AATTTAGTAACTCGCA
65 AATATAGTAACTAGCA
* **
37320774 CAAATGCCTTCGGG-CTTAACCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* * *
37320837 GATATGGTCACTTAGCA
65 AATATAGTAAC-TAGCA
*
37320854 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37320879 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
ATATAGTAACTAGCA
Found at i:37320878 original size:40 final size:40
Alignment explanation
Indices: 37320694--37320878 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
37320684 GCTCCTCGTT
* *
37320694 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
37320734 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37320774 CAAATGCCTTCGGG-CTTAACCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
37320813 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37320854 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37320879 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37323882 original size:28 final size:29
Alignment explanation
Indices: 37323828--37323882 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
37323818 ATAGGGGTTT
*
37323828 TCACACGGCCTAGCACACGCCCGTGTCCC
1 TCACACGGCCTAGCACACGCCCATGTCCC
*
37323857 TCACACGGCC-ATG-ACACGCCTATGTC
1 TCACACGGCCTA-GCACACGCCCATGTC
37323883 TTAGCTCGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.20, C:0.44, G:0.20, T:0.16
Consensus pattern (29 bp):
TCACACGGCCTAGCACACGCCCATGTCCC
Found at i:37342171 original size:49 final size:48
Alignment explanation
Indices: 37342110--37342240 Score: 156
Period size: 49 Copynumber: 2.7 Consensus size: 48
37342100 ACATTAAAGT
* * *
37342110 TGATGCCGTGTCCCAGATAGGTCTTACATTGACTTTCATATATCGAG-G
1 TGATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCG-GTG
* *
37342158 CTGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCGGTG
1 -TGATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGGTG
* * *
37342207 TCGATGCCATGTCCTAGACAAGTCTTACACTGAC
1 T-GATGCCATGTCCCAGATAGGTCTTACACTGAC
37342241 ACACAACAAG
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
48 2 0.03
49 69 0.97
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (48 bp):
TGATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGGTG
Found at i:37346296 original size:40 final size:40
Alignment explanation
Indices: 37346172--37346396 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
37346162 TATTCGAATG
* * *
37346172 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGAGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
37346213 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* * * *
37346253 ATATCCGGTCTAAGACCTGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
37346293 ATATCCGGGCTAAAACTCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
37346333 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
37346373 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
37346397 CTTGTGCAAG
Statistics
Matches: 151, Mismatches: 31, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
39 1 0.01
40 121 0.80
41 29 0.19
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:37346346 original size:80 final size:80
Alignment explanation
Indices: 37346172--37346432 Score: 251
Period size: 80 Copynumber: 3.3 Consensus size: 80
37346162 TATTCGAATG
* * * *
37346172 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGAGTATAACCGGACTAAGA-TCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACT-CGAAGG
*
37346236 CATTCGTGCGAGTTGCT
64 CATTCGTGCGAGTCGCT
* * * * * *
37346253 ATATCCGGTCTAAGACCTGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACTCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACTCGAAGGCA
* * *
37346318 TTTGTGCTAG-CGATT
66 TTCGTGCGAGTCG-CT
* * * * * *
37346333 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACTCGAAGGCA
* * *
37346398 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
37346412 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
37346433 ATTACTTGAT
Statistics
Matches: 148, Mismatches: 29, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 89 0.60
81 31 0.21
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACTCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:37354404 original size:40 final size:40
Alignment explanation
Indices: 37354310--37354505 Score: 186
Period size: 40 Copynumber: 4.9 Consensus size: 40
37354300 TATTCGAATG
* * * *
37354310 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GCGATT
* * * * **
37354351 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAG-TTTCT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGAT-T
*
37354391 ATATCCGGGCTAAGA-CCTGAAGGCATTTGCGCTAGCGATT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGCGATT
*
37354431 ATATCCGGGCTAA-AACTCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTAGCGATT
*
37354471 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAG
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAG
37354506 TGACCACATC
Statistics
Matches: 128, Mismatches: 19, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
39 3 0.02
40 95 0.74
41 29 0.23
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGATT
Found at i:37354522 original size:40 final size:40
Alignment explanation
Indices: 37354393--37354534 Score: 122
Period size: 40 Copynumber: 3.5 Consensus size: 40
37354383 GAGTTTCTAT
* * ** ** *
37354393 ATCCGGGCTAAGACCTGAAGGCATTTGCGCTAGCGATTAT
1 ATCCCGGCTAAGACCCGAAGGCATTTATGCTAGCGACCAC
* * * * ** *
37354433 ATCCGGGCTAAAACTCGAAGGCATTTGTGCTAGCGATTAT
1 ATCCCGGCTAAGACCCGAAGGCATTTATGCTAGCGACCAC
* * *
37354473 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCAC
1 ATCCCGGCTAAGACCCGAAGGCATTTATGCTAGCGACCAC
*
37354513 ATCCCGGCTAAGACCTGAAGGC
1 ATCCCGGCTAAGACCCGAAGGC
37354535 CTTGTGCAAG
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCCGGCTAAGACCCGAAGGCATTTATGCTAGCGACCAC
Found at i:37354522 original size:80 final size:79
Alignment explanation
Indices: 37354310--37354570 Score: 244
Period size: 80 Copynumber: 3.3 Consensus size: 79
37354300 TATTCGAATG
* * *
37354310 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACTATA-ACCGGACTAAGA-TCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCCGG-CTAAGACT-CGAAG
* * *
37354373 GCATTCGTGCGAGTTTCT
63 GCATTTGTGCAAGTAT-T
* * * * * * *
37354391 ATATCCGGGCTAAGACCTGAAGGCATTTGCGCTAGCGATTATATCCGGGCTAAAACTCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCCGGCTAAGACTCGAAGGCA
* *
37354456 TTTGTGCTAGCGATT
66 TTTGTGCAAG-TATT
* * *
37354471 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCCGGCTAAGAC-CTGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCCGGCTAAGACTC-GAAGGC
*
37354535 -CTTGTGCAAGTAGTT
65 ATTTGTGCAAGTA-TT
*
37354550 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
37354571 ATTACTTGAG
Statistics
Matches: 147, Mismatches: 28, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
78 15 0.10
79 17 0.12
80 81 0.55
81 34 0.23
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCCGGCTAAGACTCGAAGGCA
TTTGTGCAAGTATT
Found at i:37363227 original size:49 final size:47
Alignment explanation
Indices: 37363174--37363487 Score: 268
Period size: 49 Copynumber: 6.5 Consensus size: 47
37363164 GAGGCCAATA
*
37363174 CCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATG
1 CCATGTCCCAGACAGGTCTTACACTGGCT-TCACTTATCTG-GCCGATG
* *
37363223 CCATGTCCCAGACAGGTCTTACACTGACTTC-CATATATCAAGGCCGATG
1 CCATGTCCCAGACAGGTCTTACACTGGCTTCAC-T-TATC-TGGCCGATG
* * *
37363272 CCATGTCCCAGACAGATCTTATACTGGCTCTCACTTATCTGTGTCGATG
1 CCATGTCCCAGACAGGTCTTACACTGGCT-TCACTTATCTG-GCCGATG
* * * **
37363321 CCATGTCCCAGACAGGTCTTACACAT-AC-ACAC--CTCAAGCCGATG
1 CCATGTCCCAGACAGGTCTTACAC-TGGCTTCACTTATCTGGCCGATG
* *
37363365 CCATGTCCCAGACAGGTCTTACACTAGCTTGCA--TATCTTGAGGCCGATT
1 CCATGTCCCAGACAGGTCTTACACTGGCTT-CACTTATC-T--GGCCGATG
* * *
37363414 CCGTGTCCCAAACAGGTCTTACACTGGCTCTCA-TCTAT-TGGCGCAGAAG
1 CCATGTCCCAGACAGGTCTTACACTGGCT-TCACT-TATCTGGC-C-GATG
*
37363463 CCATTTCCCAGACAGGTCTTACACT
1 CCATGTCCCAGACAGGTCTTACACT
37363488 AGCAAACACA
Statistics
Matches: 216, Mismatches: 30, Indels: 38
0.76 0.11 0.13
Matches are distributed among these distances:
43 1 0.00
44 31 0.14
45 2 0.01
46 4 0.02
47 7 0.03
48 5 0.02
49 156 0.72
50 6 0.03
51 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
CCATGTCCCAGACAGGTCTTACACTGGCTTCACTTATCTGGCCGATG
Found at i:37363251 original size:98 final size:98
Alignment explanation
Indices: 37363077--37363389 Score: 352
Period size: 98 Copynumber: 3.3 Consensus size: 98
37363067 AATGCTGATC
* * * ** ** * *
37363077 CCATGTTCCAAACATGGTTTTACACTGGCTCTCAC--ATCTAAGTAAATGCCATGTCCCAAACAA
1 CCATGTCCCAGACA-GGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAG
* * * * *
37363140 GTATTAAATTGACTTCCATGCATCGAGGCCAATA
65 GTCTTACACTGACTTCCATACATCAAGGCCAATA
37363174 CCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGG
1 CCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGG
* * *
37363239 TCTTACACTGACTTCCATATATCAAGGCCGATG
66 TCTTACACTGACTTCCATACATCAAGGCCAATA
* *
37363272 CCATGTCCCAGACAGATCTTATACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGG
1 CCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGG
* * * * *
37363337 TCTTACAC--A--TACACACCTCAA-GCCGATG
66 TCTTACACTGACTTCCATACATCAAGGCCAATA
37363365 CCATGTCCCAGACAGGTCTTACACT
1 CCATGTCCCAGACAGGTCTTACACT
37363390 AGCTTGCATA
Statistics
Matches: 189, Mismatches: 25, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
93 30 0.16
94 8 0.04
96 20 0.11
97 12 0.06
98 119 0.63
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (98 bp):
CCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGG
TCTTACACTGACTTCCATACATCAAGGCCAATA
Found at i:37363409 original size:142 final size:142
Alignment explanation
Indices: 37363218--37363486 Score: 366
Period size: 142 Copynumber: 1.9 Consensus size: 142
37363208 TTATCTGTGT
*
37363218 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCAAGGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCAAGGCCGATGCCATGTCCCAA
* * *
37363283 ACAGATCTTATACTGGCTCTCA-CTTATCTGTG-TC-GATGCCATGTCCCAGACAGGTCTTACAC
66 ACAGATCTTACACTGGCTCTCATC-TAT-TG-GCGCAGAAGCCATGTCCCAGACAGGTCTTACAC
37363345 ATACACACCTCAAGC
128 ATACACACCTCAAGC
* * ** * *
37363360 CGATGCCATGTCCCAGACAGGTCTTACACT-AGCTTGCATATCTTGAGGCCGATTCCGTGTCCCA
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTCCATATATCAAGGCCGATGCCATGTCCCA
* *
37363424 AACAGGTCTTACACTGGCTCTCATCTATTGGCGCAGAAGCCATTTCCCAGACAGGTCTTACAC
65 AACAGATCTTACACTGGCTCTCATCTATTGGCGCAGAAGCCATGTCCCAGACAGGTCTTACAC
37363487 TAGCAAACAC
Statistics
Matches: 111, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
140 1 0.01
141 4 0.04
142 105 0.95
143 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (142 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCAAGGCCGATGCCATGTCCCAA
ACAGATCTTACACTGGCTCTCATCTATTGGCGCAGAAGCCATGTCCCAGACAGGTCTTACACATA
CACACCTCAAGC
Found at i:37366903 original size:2 final size:2
Alignment explanation
Indices: 37366896--37366924 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37366886 AAATGACCAA
37366896 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
37366925 ATGTAACATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:37376985 original size:31 final size:31
Alignment explanation
Indices: 37376950--37377025 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
37376940 GCCACAAGTC
37376950 ACACGGGCGTGTGAGTCCACACGACCCACTT
1 ACACGGGCGTGTGAGTCCACACGACCCACTT
* * *
37376981 ACACGGGCATGTGAGTCTACACGGCCCACTT
1 ACACGGGCGTGTGAGTCCACACGACCCACTT
37377012 ACACGGGCGTGTGA
1 ACACGGGCGTGTGA
37377026 TCCTTTATGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (31 bp):
ACACGGGCGTGTGAGTCCACACGACCCACTT
Found at i:37378039 original size:22 final size:22
Alignment explanation
Indices: 37377995--37378039 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
37377985 TATTAAACAT
* * *
37377995 AAAAAATTAAAGTTAACATTAA
1 AAAAAATTAAAGTGAAAAATAA
37378017 AAAAAATTAAAGTGAAAAATAA
1 AAAAAATTAAAGTGAAAAATAA
37378039 A
1 A
37378040 TTTAAAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (22 bp):
AAAAAATTAAAGTGAAAAATAA
Found at i:37381433 original size:30 final size:30
Alignment explanation
Indices: 37381398--37381455 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
37381388 TGGGGTCATG
*
37381398 ACACACAGGTGTGTGG-TCTACCCGTGTGTC
1 ACACACAGGCGTGTGGATC-ACCCGTGTGTC
37381428 ACACACAGGCGTGTGGATCACCCGTGTG
1 ACACACAGGCGTGTGGATCACCCGTGTG
37381456 GAAGTGCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (30 bp):
ACACACAGGCGTGTGGATCACCCGTGTGTC
Found at i:37383289 original size:5 final size:6
Alignment explanation
Indices: 37383274--37383307 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
37383264 AAAGAAACGC
*
37383274 AAAAAT AAAAAT AAAAAT -AAAAT AAAAAG AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
37383308 CAAGTTGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:37383289 original size:12 final size:12
Alignment explanation
Indices: 37383274--37383307 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
37383264 AAAGAAACGC
37383274 AAAAATAAAAAT
1 AAAAATAAAAAT
37383286 AAAAAT-AAAAT
1 AAAAATAAAAAT
*
37383297 AAAAAGAAAAA
1 AAAAATAAAAA
37383308 CAAGTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:37383295 original size:17 final size:17
Alignment explanation
Indices: 37383275--37383307 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37383265 AAGAAACGCA
*
37383275 AAAATAAAAATAAAAAT
1 AAAATAAAAAGAAAAAT
37383292 AAAATAAAAAGAAAAA
1 AAAATAAAAAGAAAAA
37383308 CAAGTTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (17 bp):
AAAATAAAAAGAAAAAT
Found at i:37393322 original size:215 final size:215
Alignment explanation
Indices: 37392944--37393377 Score: 805
Period size: 215 Copynumber: 2.0 Consensus size: 215
37392934 TGGCGTGTGG
37392944 ATCACCCATGTGGAAGTGCCTAGCCCGTGTGAAACACTGATTTAGGCCTAATTTGTCCGTTTTTG
1 ATCACCCATGTGGAAGTGCCTAGCCCGTGTGAAACACTGATTTAGGCCTAATTTGTCCGTTTTTG
*
37393009 GCCCGTTTCTCACTCTTTTTGCTATCCTAAGCTTTCCTAAGTATAAAACATGAAATTAAAGGATT
66 GCCCATTTCTCACTCTTTTTGCTATCCTAAGCTTTCCTAAGTATAAAACATGAAATTAAAGGATT
* * *
37393074 AGGAGCATTAAATTCAATGAAACCAAGGAAAAATCATCCATAAATATGCCAAGCATGGGGTAAAA
131 AGGAGCATCAAATTCAATGAAACCAAAGAAAAATCATCCATAAATATGCCAAGCACGGGGTAAAA
37393139 ATATGTATATATTATGGTTT
196 ATATGTATATATTATGGTTT
*
37393159 ATCACCCATGTGGAAGTGCCTAGCCCGTGTGAAACACTGATTTAGGCCTAATTTGTCTGTTTTTG
1 ATCACCCATGTGGAAGTGCCTAGCCCGTGTGAAACACTGATTTAGGCCTAATTTGTCCGTTTTTG
*
37393224 GCCCATTTCTCACTCTTTTTGCTATCCTAAGCTTTTCTAAGTATAAAACATGAAATTAAAGGATT
66 GCCCATTTCTCACTCTTTTTGCTATCCTAAGCTTTCCTAAGTATAAAACATGAAATTAAAGGATT
*
37393289 AGGAGCATCAAATTCATTGAAACCAAAGAAAAATCATCCATAAATATGCCAAGCACGGGGTAAAA
131 AGGAGCATCAAATTCAATGAAACCAAAGAAAAATCATCCATAAATATGCCAAGCACGGGGTAAAA
37393354 ATATGTATATATTATGGTTT
196 ATATGTATATATTATGGTTT
37393374 ATCA
1 ATCA
37393378 ATCATCTATG
Statistics
Matches: 212, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
215 212 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (215 bp):
ATCACCCATGTGGAAGTGCCTAGCCCGTGTGAAACACTGATTTAGGCCTAATTTGTCCGTTTTTG
GCCCATTTCTCACTCTTTTTGCTATCCTAAGCTTTCCTAAGTATAAAACATGAAATTAAAGGATT
AGGAGCATCAAATTCAATGAAACCAAAGAAAAATCATCCATAAATATGCCAAGCACGGGGTAAAA
ATATGTATATATTATGGTTT
Found at i:37396578 original size:42 final size:42
Alignment explanation
Indices: 37396470--37396589 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 42
37396460 TATCGTACCA
* * ** *
37396470 ATGTCATGTCCCAGATATGGTCTTACATGTAATCTTGTATTG
1 ATGTCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * * * *
37396512 ACGCCAATAGCCCAGCTATTGTCTTACACG-AAGTCTCATATCG
1 ATGTC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
37396555 ATGTCATATCCCAGATATGGTCTTACACGTAATCT
1 ATGTCATATCCCAGATATGGTCTTACACGTAATCT
37396590 TAGTAACCCT
Statistics
Matches: 60, Mismatches: 15, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
42 29 0.48
43 31 0.52
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (42 bp):
ATGTCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:37398575 original size:14 final size:14
Alignment explanation
Indices: 37398558--37398596 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 14
37398548 TTTGCCATGA
37398558 TGGATTGTAGAAAT
1 TGGATTGTAGAAAT
37398572 TGGATTGTGGTAGAAAT
1 TGGA-T-T-GTAGAAAT
37398589 TGGATTGT
1 TGGATTGT
37398597 GGTTTAGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 6 0.27
15 2 0.09
16 2 0.09
17 12 0.55
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.38
Consensus pattern (14 bp):
TGGATTGTAGAAAT
Found at i:37398586 original size:17 final size:17
Alignment explanation
Indices: 37398564--37398599 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
37398554 ATGATGGATT
37398564 GTAGAAATTGGATTGTG
1 GTAGAAATTGGATTGTG
37398581 GTAGAAATTGGATTGTG
1 GTAGAAATTGGATTGTG
37398598 GT
1 GT
37398600 TTAGGGTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.36, T:0.36
Consensus pattern (17 bp):
GTAGAAATTGGATTGTG
Found at i:37399073 original size:20 final size:21
Alignment explanation
Indices: 37399048--37399086 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
37399038 ATTTTGTAAT
37399048 TAAAAG-GAAATTAAAACAAA
1 TAAAAGTGAAATTAAAACAAA
37399068 TAAAAGTGAAATTAAAACA
1 TAAAAGTGAAATTAAAACA
37399087 TTTTAACTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.67, C:0.05, G:0.10, T:0.18
Consensus pattern (21 bp):
TAAAAGTGAAATTAAAACAAA
Found at i:37406770 original size:31 final size:31
Alignment explanation
Indices: 37406735--37406798 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37406725 CCTTTTCATA
*
37406735 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
37406766 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
37406797 TT
1 TT
37406799 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:37407078 original size:20 final size:20
Alignment explanation
Indices: 37407053--37407119 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
37407043 TTATGAATAC
37407053 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
37407073 ATCATGTGCATAGCATACAG
1 ATCATGTGCATATCATACAT
*
37407093 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
37407113 ACCATGT
1 ATCATGT
37407120 TTACTAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:37409219 original size:6 final size:6
Alignment explanation
Indices: 37409208--37409236 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
37409198 AGGACATAGG
37409208 TCTGAA TCTGAA TCTGAA TCTGAA TCTGA
1 TCTGAA TCTGAA TCTGAA TCTGAA TCTGA
37409237 CTGTGTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (6 bp):
TCTGAA
Found at i:37415965 original size:20 final size:21
Alignment explanation
Indices: 37415940--37415991 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
37415930 TTCAAGACAC
**
37415940 ACACACCCGTGTG-GTCTAAG
1 ACACACCCGTGTGACCCTAAG
37415960 ACACACCCGTGTGACCCTAAG
1 ACACACCCGTGTGACCCTAAG
*
37415981 ACACGCCCGTG
1 ACACACCCGTG
37415992 CTGCAAGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.25, C:0.37, G:0.23, T:0.15
Consensus pattern (21 bp):
ACACACCCGTGTGACCCTAAG
Found at i:37423353 original size:15 final size:13
Alignment explanation
Indices: 37423324--37423350 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37423314 GCTCGGCAAG
37423324 GACACGCCCGTGT
1 GACACGCCCGTGT
37423337 GACACGCCCGTGT
1 GACACGCCCGTGT
37423350 G
1 G
37423351 TGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:37431898 original size:40 final size:40
Alignment explanation
Indices: 37431814--37432038 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
37431804 TTGAATGATG
* * * *
37431814 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
37431854 TCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37431894 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37431933 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37431973 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37432014 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37432039 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37432056 original size:80 final size:80
Alignment explanation
Indices: 37431814--37432071 Score: 233
Period size: 80 Copynumber: 3.2 Consensus size: 80
37431804 TTGAATGATG
* * * * * * * *
37431814 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-TCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
** *
37431877 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* *
37431894 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
37431958 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
37431973 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
37432037 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
37432053 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37432072 TACGTGATTT
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 73 0.48
80 76 0.50
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:37439899 original size:40 final size:39
Alignment explanation
Indices: 37439815--37440038 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 39
37439805 TTGAATGATG
* * * *
37439815 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37439855 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37439895 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
37439934 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
*
37439974 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37440014 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
37440039 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 68 0.42
40 86 0.53
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37439951 original size:79 final size:79
Alignment explanation
Indices: 37439815--37440038 Score: 283
Period size: 79 Copynumber: 2.8 Consensus size: 79
37439805 TTGAATGATG
* * * * *
37439815 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
37439878 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
* *
37439895 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
*
37439960 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* * *
37439974 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTT
37440038 G
65 G
37440039 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 107 0.84
80 19 0.15
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:37440056 original size:79 final size:79
Alignment explanation
Indices: 37439854--37440071 Score: 230
Period size: 79 Copynumber: 2.8 Consensus size: 79
37439844 AAGTGACCAT
* ** * * *
37439854 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCGAAGGCAT
37439917 TGGTGCGAGTTACTAA
64 TGGTGCGAGTTACTAA
* ** * *
37439933 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTG
37439998 GTGCGAGTTACTATA
66 GTGCGAGTTACTA-A
* * *
37440013 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTT-AAGTCCGAAGG
37440072 TACGTGATTT
Statistics
Matches: 121, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 7 0.06
79 112 0.93
80 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:37446853 original size:40 final size:40
Alignment explanation
Indices: 37446703--37446924 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
37446693 TTGAATGATG
* * * *
37446703 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
37446743 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG--ACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
37446781 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
37446819 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
37446860 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37446900 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37446925 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 10, Indels: 16
0.86 0.05 0.08
Matches are distributed among these distances:
36 9 0.05
37 9 0.05
38 28 0.17
39 10 0.06
40 98 0.60
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37454994 original size:40 final size:40
Alignment explanation
Indices: 37454757--37455013 Score: 278
Period size: 40 Copynumber: 6.5 Consensus size: 40
37454747 TGAATGATGT
* * * * *
37454757 CCGGGCTAAATCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
37454797 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
37454837 CCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
37454875 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
37454916 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
37454956 CCGGGCTATGTCCCGAAGGCATTTGAT-CGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTA-CTATAA
* *
37454996 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37455014 TACGTGATTT
Statistics
Matches: 190, Mismatches: 18, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
39 49 0.26
40 130 0.68
41 11 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:37455002 original size:119 final size:119
Alignment explanation
Indices: 37454756--37455013 Score: 312
Period size: 119 Copynumber: 2.2 Consensus size: 119
37454746 TTGAATGATG
* *
37454756 TCCGGGCTAAATCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAATCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* *
37454821 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * *
37454875 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAATCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * *
37454938 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAT-CGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTG-TGCGAGTTA-CTAAA
37454995 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
37455014 TACGTGATTT
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
118 3 0.03
119 85 0.71
120 31 0.26
121 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAATCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37457868 original size:49 final size:50
Alignment explanation
Indices: 37457809--37457937 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 50
37457799 CATTAAAGTT
**
37457809 GATGCCATGTCCTAGACAGGTCTTACACTGAG-TTTCATATATCGAG-GCC
1 GATGCCATGTCCTAGACAGGTCTTACACTGAGATCACATATATCG-GTGCC
* * * *
37457858 GATGCCATGTCCCAAACAGGTCTTACACTG-GATCACATCTATCGGTGTC
1 GATGCCATGTCCTAGACAGGTCTTACACTGAGATCACATATATCGGTGCC
* *
37457907 AATGCCATGTCCTAGACAAGTCTTACACTGA
1 GATGCCATGTCCTAGACAGGTCTTACACTGA
37457938 CACACAACAA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
48 2 0.03
49 65 0.97
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (50 bp):
GATGCCATGTCCTAGACAGGTCTTACACTGAGATCACATATATCGGTGCC
Found at i:37459627 original size:6 final size:6
Alignment explanation
Indices: 37459616--37459648 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
37459606 GACATAGGTT
37459616 TGAATC TGAATC TGAATC TGAATC TGAATC TGA
1 TGAATC TGAATC TGAATC TGAATC TGAATC TGA
37459649 CTGTGTCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (6 bp):
TGAATC
Found at i:37466381 original size:21 final size:20
Alignment explanation
Indices: 37466338--37466382 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
37466328 TTCAAGTCAC
* *
37466338 ACACACCCGTGTGGTCTAGG
1 ACACACCCGTGTGCTCTAAG
*
37466358 ACACCCCCGTGTGACTCTAAG
1 ACACACCCGTGTG-CTCTAAG
37466379 ACAC
1 ACAC
37466383 GTCCGTGCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.24, C:0.36, G:0.22, T:0.18
Consensus pattern (20 bp):
ACACACCCGTGTGCTCTAAG
Found at i:37470702 original size:23 final size:24
Alignment explanation
Indices: 37470656--37470711 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
37470646 ATGCACAGAA
*
37470656 AGAAAATTTTGGAAAATACTTTTT
1 AGAAAATTTGGGAAAATACTTTTT
37470680 AGAAAATTTGGGAAAATACTTTTT
1 AGAAAATTTGGGAAAATACTTTTT
37470704 AGAAAATT
1 AGAAAATT
37470712 CGATTGATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.45, C:0.04, G:0.14, T:0.38
Consensus pattern (24 bp):
AGAAAATTTGGGAAAATACTTTTT
Found at i:37472640 original size:27 final size:27
Alignment explanation
Indices: 37472602--37472662 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
37472592 TGGTCTGTTG
*
37472602 AATCCTAATATGGGCCTACGAGGCCCA
1 AATCATAATATGGGCCTACGAGGCCCA
37472629 AATCATAATATGGGCCTACGAGGCCCA
1 AATCATAATATGGGCCTACGAGGCCCA
37472656 AATCATA
1 AATCATA
37472663 CTTTGGAAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (27 bp):
AATCATAATATGGGCCTACGAGGCCCA
Found at i:37474125 original size:49 final size:49
Alignment explanation
Indices: 37474065--37474194 Score: 145
Period size: 49 Copynumber: 2.7 Consensus size: 49
37474055 CATTAAAGTT
* * *
37474065 GATGCCGTGTCCTAGATAGGTCTTACATTGACTTTCATATATCGAG-GCC
1 GATGCCATGTCCTAGACAGGTCTTACATTGACTCTCATATATCG-GTGCC
* * * **
37474114 GATGCCATGTCCAAGACAGGTCTTACATTGGCTCTCATCTATCGGTGTT
1 GATGCCATGTCCTAGACAGGTCTTACATTGACTCTCATATATCGGTGCC
** *
37474163 GATGCCATGTCCTAGACAATTCTTACACTGAC
1 GATGCCATGTCCTAGACAGGTCTTACATTGAC
37474195 ACACAATATG
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
48 1 0.01
49 66 0.99
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (49 bp):
GATGCCATGTCCTAGACAGGTCTTACATTGACTCTCATATATCGGTGCC
Found at i:37474327 original size:46 final size:46
Alignment explanation
Indices: 37474252--37474339 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
37474242 TATATCCTGA
* * *
37474252 GGCCGATGCATGTTCCAGACATGTCTTACACTGGCTCTCATAACAT
1 GGCCGATGCATGTGCCAAACATGTCTTACACTGGCTCGCATAACAT
* *
37474298 GGCCGATGCATGTGCCAAACATTTGTTACACTGGCTCGCATA
1 GGCCGATGCATGTGCCAAACATGTCTTACACTGGCTCGCATA
37474340 CCACCCAATG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (46 bp):
GGCCGATGCATGTGCCAAACATGTCTTACACTGGCTCGCATAACAT
Found at i:37481628 original size:974 final size:974
Alignment explanation
Indices: 37479740--37482661 Score: 5558
Period size: 974 Copynumber: 3.0 Consensus size: 974
37479730 CTAAGTACCA
**
37479740 AGCGTCCATCATATGGAGGTAAGCTTCTCCAGCCCCTCCGCCCTGGCTCATTGTCACGGACCCAC
1 AGCGTCCATCATATGGAGGTAAGCTTCTGAAGCCCCTCCGCCCTGGCTCATTGTCACGGACCCAC
*
37479805 TATCCATGGGCATAGTCCTTTTACTTTGAGCCGATGTATTACTTTCCACGTCATCCACCGTAGCA
66 TATCCACGGGCATAGTCCTTTTACTTTGAGCCGATGTATTACTTTCCACGTCATCCACCGTAGCA
37479870 TGTCAGGATCCATTTACTATATATATAAAAGCACAATTTATCTCATCAGAAGCCGTCACACTATC
131 TGTCAGGATCCATTTACTATATATATAAAAGCACAATTTATCTCATCAGAAGCCGTCACACTATC
* *
37479935 AATATACAATTATGGCATGTATAGCTAGACTCATACTCACACTAGGTTAGTCTTAGAATAGACTA
196 AATATACAATTATGGCATGTATAGCTAGACTCATACTCACGCTAGGTTAGTCTTAGAATCGACTA
*
37480000 AACCATAGCTTTGATACCACTAAATGTAACACCCCTTACTGAAGTCTGAGACCAGATATGGACAC
261 AACCATAGCTCTGATACCACTAAATGTAACACCCCTTACTGAAGTCTGAGACCAGATATGGACAC
37480065 GAGGCATTACTTGACTTAAAGGCATGCATTCAATCTTTTCTAAAATGTAAAAACTAGGTCAAATT
326 GAGGCATTACTTGACTTAAAGGCATGCATTCAATCTTTTCTAAAATGTAAAAACTAGGTCAAATT
** *
37480130 AAAACTTTAATTTCATGGTTTGTTGATTCCTAATATGGGCCTACAAAATCCAAATCATACTTCGA
391 AAAACTTTAATTTCATGGTTTGTTGATTCCTAATATGGGCCTACAAGGTCCAAATCATACTTCAA
* *
37480195 AAATAGTCTGGGATTAATTTGATCGCTTATGAAAACTTTGGAAAAAGTCACTTGAAATAGGGCAC
456 AAATAGTTTGGGATTAATTTGATCGCTTAGGAAAACTTTGGAAAAAGTCACTTGAAATAGGGCAC
*
37480260 ATGTCCGTGTTGAAGGGCAATACGCCCGTGTGGCCCTATTGACCTAGCCGTGCCAAAGGCCCGTG
521 ATGTCCGTGTGGAAGGGCAATACGCCCGTGTGGCCCTATTGACCTAGCCGTGCCAAAGGCCCGTG
* * * * *
37480325 TGGCTCACACAGCCTAAGCATAAAGGGACACGCCTGTGCCCTAAGCACGTGTGAATTAAATTCCA
586 TGGCTCACACGGCCTAAGCATAAAGGGACACGCCCGTGCCCTGAGCGCGTGTAAATTAAATTCCA
*
37480390 AATTCTAGCCTATAGGGGTTTTTACACAGCCTGAAACACGCCCGTGTCCATGGCCCGTGTCCCTC
651 AATTCTAGCCTACAGGGGTTTTTACACAGCCTGAAACACGCCCGTGTCCATGGCCCGTGTCCCTC
37480455 ACATGGCCATGACACGCCCGTGTCTTAGCCTGTGTCTAAAAACCTTAACATTCTATTTCTGACAT
716 ACATGGCCATGACACGCCCGTGTCTTAGCCTGTGTCTAAAAACCTTAACATTCTATTTCTGACAT
*
37480520 TAGTAACAATTTAGGGGCACACAGCCAAGGCACACGCCTATGGCCTGAGACCGTATTCTCCACAC
781 TAGTAACAATTTAGGGGCACACAGCCAAGGCACACGCCTGTGGCCTGAGACCGTATTCTCCACAC
37480585 GGCTGATACACATGGCTGTGTCTCTGCCCGTGTGTTTAGTACCATGCATACTAACTTGCAAATTC
846 GGCTGATACACATGGCTGTGTCTCTGCCCGTGTGTTTAGTACCATGCATACTAACTTGCAAATTC
37480650 AAGGTGTAGGGGCCACACAGTCGAATAACACGTACACGCTCGTGTGTCTATCTATGTGGACGAT
911 AAGGTGTAGGGGCCACACAGTCGAATAACACGTACACGCTCGTGTGTCTATCTATGTGGACGAT
37480714 AGCGTCCATCATATGGAGGTAAGCTTCTGAAGCCCCTCCGCCCTGGCTCATTGTCACGGACCCAC
1 AGCGTCCATCATATGGAGGTAAGCTTCTGAAGCCCCTCCGCCCTGGCTCATTGTCACGGACCCAC
*
37480779 TATCCACGGGCATAGTCCTTTTACTTTGAGCCGATGTATTACTTTCCGCGTCATCCACCGTAGCA
66 TATCCACGGGCATAGTCCTTTTACTTTGAGCCGATGTATTACTTTCCACGTCATCCACCGTAGCA
37480844 TGTCAGGATCCATTTACTATATATATAAAAGCACAATTTATCTCATCAGAAGCCGTCACACTATC
131 TGTCAGGATCCATTTACTATATATATAAAAGCACAATTTATCTCATCAGAAGCCGTCACACTATC
37480909 AATATACAATTATGGCATGTATAGCTAGACTCATACTCACGCTAGGTTAGTCTTAGAATCGACTA
196 AATATACAATTATGGCATGTATAGCTAGACTCATACTCACGCTAGGTTAGTCTTAGAATCGACTA
37480974 AACCATAGCTCTGATACCACTAAATGTAACACCCCTTACTGAAGTCTGAGACCAGATATGGACAC
261 AACCATAGCTCTGATACCACTAAATGTAACACCCCTTACTGAAGTCTGAGACCAGATATGGACAC
*
37481039 GAGGCATTACTTGACTTAAAGGCATGCATCCAATCTTTTCTAAAATGTAAAAACTAGGTCAAATT
326 GAGGCATTACTTGACTTAAAGGCATGCATTCAATCTTTTCTAAAATGTAAAAACTAGGTCAAATT
37481104 AAAACTTTAATTTCATGGTTTGTTGATTCCTAATATGGGCCTACAAGGTCCAAATCATACTTCAA
391 AAAACTTTAATTTCATGGTTTGTTGATTCCTAATATGGGCCTACAAGGTCCAAATCATACTTCAA
*
37481169 AAATAGTTTGGGATTAATTTGATCACTTAGGAAAACTTTGGAAAAAGTCACTTGAAATAGGGCAC
456 AAATAGTTTGGGATTAATTTGATCGCTTAGGAAAACTTTGGAAAAAGTCACTTGAAATAGGGCAC
*
37481234 ATGTCCGTGTGGAAGGGCAATACGCCCATGTGGCCCTATTGACCTAGCCGTGCCAAAGGCCCGTG
521 ATGTCCGTGTGGAAGGGCAATACGCCCGTGTGGCCCTATTGACCTAGCCGTGCCAAAGGCCCGTG
37481299 TGGCTCACACGGCCTAAGCATAAAGGGACACGCCCGTGCCCTGAGCGCGTGTAAATTAAATTCCA
586 TGGCTCACACGGCCTAAGCATAAAGGGACACGCCCGTGCCCTGAGCGCGTGTAAATTAAATTCCA
*
37481364 AATTCTAGCCTACAGGGGTTTTTACACAGCCTGAAACATGCCCGTGTCCATGGCCCGTGTCCCTC
651 AATTCTAGCCTACAGGGGTTTTTACACAGCCTGAAACACGCCCGTGTCCATGGCCCGTGTCCCTC
37481429 ACATGGCCATGACACGCCCGTGTCTTAGCCTGTGTCTAAAAACCTTAACATTCTATTTCTGACAT
716 ACATGGCCATGACACGCCCGTGTCTTAGCCTGTGTCTAAAAACCTTAACATTCTATTTCTGACAT
37481494 TAGTAACAATTTAGGGGCACACAGCCAAGGCACACGCCTGTGGCCTGAGACCGTATTCTCCACAC
781 TAGTAACAATTTAGGGGCACACAGCCAAGGCACACGCCTGTGGCCTGAGACCGTATTCTCCACAC
37481559 GGCTGATACACATGGCTGTGTCTCTGCCCGTGTGTTTAGTACCATGCATACTAACTTGCAAATTC
846 GGCTGATACACATGGCTGTGTCTCTGCCCGTGTGTTTAGTACCATGCATACTAACTTGCAAATTC
37481624 AAGGTGTAGGGGCCACACAGTCGAATAACACGTACACGCTCGTGTGTCTATCTATGTGGACGAT
911 AAGGTGTAGGGGCCACACAGTCGAATAACACGTACACGCTCGTGTGTCTATCTATGTGGACGAT
37481688 AGCGTCCATCATATGGAGGTAAGCTTCTGAAGCCCCTCCGCCCTGGCTCATTGTCACGGACCCAC
1 AGCGTCCATCATATGGAGGTAAGCTTCTGAAGCCCCTCCGCCCTGGCTCATTGTCACGGACCCAC
*
37481753 TATCCACGGGCATAGTCCTTTTACTTTGAGCCGATGTATTACTTTCCACGTCATCCGCCGTAGCA
66 TATCCACGGGCATAGTCCTTTTACTTTGAGCCGATGTATTACTTTCCACGTCATCCACCGTAGCA
37481818 TGTCAGGATCCATTTACTATATATATAAAAGCACAATTTATCTCATCAGAAGCCGTCACACTATC
131 TGTCAGGATCCATTTACTATATATATAAAAGCACAATTTATCTCATCAGAAGCCGTCACACTATC
*
37481883 AATATACAATTATGGCATGTATAGCTAGACTCATATTCACGCTAGGTTAGTCTTAGAATCGACTA
196 AATATACAATTATGGCATGTATAGCTAGACTCATACTCACGCTAGGTTAGTCTTAGAATCGACTA
37481948 AACCATAGCTCTGATACCACTAAATGTAACACCCCTTACTGAAGTCTGAGACCAGATATGGACAC
261 AACCATAGCTCTGATACCACTAAATGTAACACCCCTTACTGAAGTCTGAGACCAGATATGGACAC
37482013 GAGGCATTACTTGACTTAAAGGCATGCATTCAATCTTTTCTAAAATGTAAAAACTAGGTCAAATT
326 GAGGCATTACTTGACTTAAAGGCATGCATTCAATCTTTTCTAAAATGTAAAAACTAGGTCAAATT
37482078 AAAACTTTAATTTCATGGTTTGTTGATTCCTAATATGGGCCTACAAGGTCCAAATCATACTTCAA
391 AAAACTTTAATTTCATGGTTTGTTGATTCCTAATATGGGCCTACAAGGTCCAAATCATACTTCAA
*
37482143 AAATAGTTTGGGATTAATTTGATCGCTTAGGAAAACTTTGGAAAAAGTCACTTAAAATAGGGCAC
456 AAATAGTTTGGGATTAATTTGATCGCTTAGGAAAACTTTGGAAAAAGTCACTTGAAATAGGGCAC
*
37482208 ATGTCCGTCTGGAAGGGCAATACGCCCGTGTGGCCCTATTGACCTAGCCGTGCCAAAGGCCCGTG
521 ATGTCCGTGTGGAAGGGCAATACGCCCGTGTGGCCCTATTGACCTAGCCGTGCCAAAGGCCCGTG
*
37482273 TGGCTCACACGGCTTAAGCATAAAGGGACACGCCCGTGCCCTGAGCGCGTGTAAATTAAATTCCA
586 TGGCTCACACGGCCTAAGCATAAAGGGACACGCCCGTGCCCTGAGCGCGTGTAAATTAAATTCCA
37482338 AATTCTAGCCTACAGGGGTTTTTACACAGCCTGAAACACGCCCGTGTCCATGGCCCGTGTCCCTC
651 AATTCTAGCCTACAGGGGTTTTTACACAGCCTGAAACACGCCCGTGTCCATGGCCCGTGTCCCTC
*
37482403 ACATGGCCATGACACGCCCGTGTCTTAGCCTGTGTCTAAAAACCCTAACATTCTATTTCTGACAT
716 ACATGGCCATGACACGCCCGTGTCTTAGCCTGTGTCTAAAAACCTTAACATTCTATTTCTGACAT
37482468 TAGTAACAATTTAGGGGCACACAGCCAAGGCACACGCCTGTGGCCTGAGACCGTATTCTCCACAC
781 TAGTAACAATTTAGGGGCACACAGCCAAGGCACACGCCTGTGGCCTGAGACCGTATTCTCCACAC
37482533 GGCTGATACACATGGCTGTGTCTCTGCCCGTGTGTTTAGTACCATGCATACTAACTTGCAAATTC
846 GGCTGATACACATGGCTGTGTCTCTGCCCGTGTGTTTAGTACCATGCATACTAACTTGCAAATTC
*
37482598 AAGGTGTAGGGGCCACACAGTCGAATAATACGTACACGCTCGTGTGTCTATC-ATGTGGACGAT
911 AAGGTGTAGGGGCCACACAGTCGAATAACACGTACACGCTCGTGTGTCTATCTATGTGGACGAT
37482661 A
1 A
37482662 TAAGGCTATC
Statistics
Matches: 1912, Mismatches: 36, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
973 12 0.01
974 1900 0.99
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (974 bp):
AGCGTCCATCATATGGAGGTAAGCTTCTGAAGCCCCTCCGCCCTGGCTCATTGTCACGGACCCAC
TATCCACGGGCATAGTCCTTTTACTTTGAGCCGATGTATTACTTTCCACGTCATCCACCGTAGCA
TGTCAGGATCCATTTACTATATATATAAAAGCACAATTTATCTCATCAGAAGCCGTCACACTATC
AATATACAATTATGGCATGTATAGCTAGACTCATACTCACGCTAGGTTAGTCTTAGAATCGACTA
AACCATAGCTCTGATACCACTAAATGTAACACCCCTTACTGAAGTCTGAGACCAGATATGGACAC
GAGGCATTACTTGACTTAAAGGCATGCATTCAATCTTTTCTAAAATGTAAAAACTAGGTCAAATT
AAAACTTTAATTTCATGGTTTGTTGATTCCTAATATGGGCCTACAAGGTCCAAATCATACTTCAA
AAATAGTTTGGGATTAATTTGATCGCTTAGGAAAACTTTGGAAAAAGTCACTTGAAATAGGGCAC
ATGTCCGTGTGGAAGGGCAATACGCCCGTGTGGCCCTATTGACCTAGCCGTGCCAAAGGCCCGTG
TGGCTCACACGGCCTAAGCATAAAGGGACACGCCCGTGCCCTGAGCGCGTGTAAATTAAATTCCA
AATTCTAGCCTACAGGGGTTTTTACACAGCCTGAAACACGCCCGTGTCCATGGCCCGTGTCCCTC
ACATGGCCATGACACGCCCGTGTCTTAGCCTGTGTCTAAAAACCTTAACATTCTATTTCTGACAT
TAGTAACAATTTAGGGGCACACAGCCAAGGCACACGCCTGTGGCCTGAGACCGTATTCTCCACAC
GGCTGATACACATGGCTGTGTCTCTGCCCGTGTGTTTAGTACCATGCATACTAACTTGCAAATTC
AAGGTGTAGGGGCCACACAGTCGAATAACACGTACACGCTCGTGTGTCTATCTATGTGGACGAT
Found at i:37486985 original size:49 final size:46
Alignment explanation
Indices: 37486927--37487251 Score: 239
Period size: 49 Copynumber: 6.8 Consensus size: 46
37486917 CATGCATCGA
*
37486927 GGCCAATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCAATTATCT
1 GGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TC-ATTATCT
* *
37486975 GTGTCGATGCCATGTCCCAGACAGGTCTTACACT-GACTTCCATATATCAA
1 G-GCCGATGCCATGTCCCAGACAGGTCTTACACTAG-CTT-CAT-TATC-T
* * * * *
37487025 GGCCAATGCCACGTCCTAGACAGATCTTACACTGGCTCTCACTTATCT
1 GGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TCA-TTATCT
** * ** *
37487073 GTGTTGATGCCATGTCCCAGACAGGTCTTACACATA-C-ACA-CCTCA
1 G-GCCGATGCCATGTCCCAGACAGGTCTTACAC-TAGCTTCATTATCT
*
37487118 AGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCA-TATCTT
1 GGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTT-CATTATC-T
** * * *
37487165 GAGGCCGATTTCGTGTCCCAAACAGGTCTTACACTGGCTCTCATCTAT-T
1 --GGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TCAT-TATCT
* *
37487214 GGCGCAGAAGCCATGTCCCAGATAGGTCTTACACTAGC
1 GGC-C-GATGCCATGTCCCAGACAGGTCTTACACTAGC
37487252 AAACACATCA
Statistics
Matches: 216, Mismatches: 40, Indels: 41
0.73 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
44 30 0.14
45 2 0.01
46 4 0.02
47 5 0.02
48 7 0.03
49 157 0.73
50 6 0.03
51 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (46 bp):
GGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTCATTATCT
Found at i:37487028 original size:98 final size:98
Alignment explanation
Indices: 37486883--37487154 Score: 347
Period size: 98 Copynumber: 2.8 Consensus size: 98
37486873 ATCTAATTCA
* * * * * * *
37486883 ATGCCATGTTCCAAACAGGTATTAAATTGACTTCCATGCATCGAGGCCAATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCAAGGCCAATGCCATGTCCCAGAC
37486948 AGGTCTTACACTAGCTCTCAATTATCTGTGTCG
66 AGGTCTTACACTAGCTCTCAATTATCTGTGTCG
* * *
37486981 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCAAGGCCAATGCCACGTCCTAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCAAGGCCAATGCCATGTCCCAGAC
* * * *
37487046 AGATCTTACACTGGCTCTCACTTATCTGTGTTG
66 AGGTCTTACACTAGCTCTCAATTATCTGTGTCG
* * * *
37487079 ATGCCATGTCCCAGACAGGTCTTACAC--A--TACACACCTCAA-GCCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCAAGGCCAATGCCATGTCCCAGAC
37487139 AGGTCTTACACTAGCT
66 AGGTCTTACACTAGCT
37487155 TGCATATCTT
Statistics
Matches: 151, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
93 31 0.21
94 8 0.05
96 1 0.01
98 111 0.74
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (98 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATACATCAAGGCCAATGCCATGTCCCAGAC
AGGTCTTACACTAGCTCTCAATTATCTGTGTCG
Found at i:37487170 original size:142 final size:142
Alignment explanation
Indices: 37486979--37487247 Score: 337
Period size: 142 Copynumber: 1.9 Consensus size: 142
37486969 TTATCTGTGT
* *
37486979 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCAAGGCCAATGCCACGTCCTAG
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCAAGGCCAATGCCACGTCCCAA
* ** *
37487044 ACAGATCTTACACTGGCTCTCA-CTTATCT-GTGTTGATGCCATGTCCCAGACAGGTCTTACACA
66 ACAGATCTTACACTGGCTCTCATC-TAT-TGGCGCAGAAGCCATGTCCCAGACAGGTCTTACACA
37487107 TACACACCTCAAGC
129 TACACACCTCAAGC
* * ** * ** **
37487121 CGATGCCATGTCCCAGACAGGTCTTACACT-AGCTTGCATATCTTGAGGCCGATTTCGTGTCCCA
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTCCATATATCAAGGCCAATGCCACGTCCCA
* *
37487185 AACAGGTCTTACACTGGCTCTCATCTATTGGCGCAGAAGCCATGTCCCAGATAGGTCTTACAC
65 AACAGATCTTACACTGGCTCTCATCTATTGGCGCAGAAGCCATGTCCCAGACAGGTCTTACAC
37487248 TAGCAAACAC
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
141 2 0.02
142 104 0.97
143 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (142 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCAAGGCCAATGCCACGTCCCAA
ACAGATCTTACACTGGCTCTCATCTATTGGCGCAGAAGCCATGTCCCAGACAGGTCTTACACATA
CACACCTCAAGC
Found at i:37488768 original size:13 final size:13
Alignment explanation
Indices: 37488750--37488779 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
37488740 TTATAACATC
37488750 TCCAAAATAAATG
1 TCCAAAATAAATG
37488763 TCC-AAATAAATG
1 TCCAAAATAAATG
37488775 TCCAA
1 TCCAA
37488780 TGTCCATTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.50, C:0.20, G:0.07, T:0.23
Consensus pattern (13 bp):
TCCAAAATAAATG
Found at i:37489726 original size:5 final size:5
Alignment explanation
Indices: 37489716--37489748 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
37489706 AATGCTATTG
37489716 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAA
37489749 GATGTGATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:37505289 original size:30 final size:30
Alignment explanation
Indices: 37505254--37505311 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
37505244 CACGGTCATG
*
37505254 ACACACGGGCGTGTGG-TCTACCCGTGTGTC
1 ACACACAGGCGTGTGGATC-ACCCGTGTGTC
37505284 ACACACAGGCGTGTGGATCACCCGTGTG
1 ACACACAGGCGTGTGGATCACCCGTGTG
37505312 GAAGTGCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (30 bp):
ACACACAGGCGTGTGGATCACCCGTGTGTC
Found at i:37516129 original size:39 final size:39
Alignment explanation
Indices: 37516085--37516356 Score: 391
Period size: 39 Copynumber: 7.0 Consensus size: 39
37516075 ATTATATTAT
* *
37516085 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
37516124 CAGCACGAAGCCTGCGGGACTTTGGCCCTGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
37516163 CAGCACGAAGCTTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * * *
37516202 TAGCACGAAGTCTGCGGGACTTTAGTCCAGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * * * *
37516241 CAGCACGAAGCCTACAGGACTTTGGCCTGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
37516280 CAACACGAAGCTTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
37516319 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
37516357 TTAGTGTCTT
Statistics
Matches: 203, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 203 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:37516406 original size:12 final size:12
Alignment explanation
Indices: 37516389--37516423 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
37516379 ACATGTTAAC
37516389 ACATTTCACATA
1 ACATTTCACATA
37516401 ACATTTCACATA
1 ACATTTCACATA
37516413 ACATTTCACAT
1 ACATTTCACAT
37516424 TAGCAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.34
Consensus pattern (12 bp):
ACATTTCACATA
Found at i:37520812 original size:30 final size:30
Alignment explanation
Indices: 37520768--37520825 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
37520758 CACGGCCATG
* *
37520768 ACACACGGGCGTGT-GTTCTACCCGTGTGTC
1 ACACACGGGAGTGTGGATC-ACCCGTGTGTC
*
37520798 ACACATGGGAGTGTGGATCACCCGTGTG
1 ACACACGGGAGTGTGGATCACCCGTGTG
37520826 GAAGTGCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.17, C:0.26, G:0.33, T:0.24
Consensus pattern (30 bp):
ACACACGGGAGTGTGGATCACCCGTGTGTC
Found at i:37524230 original size:42 final size:41
Alignment explanation
Indices: 37524122--37524234 Score: 118
Period size: 43 Copynumber: 2.7 Consensus size: 41
37524112 TATCCTACCA
** * *
37524122 ATGTCATATCCCAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGTCATATCCCAGATATGGTCTTACA-CAAATCTCATATCG
* * * * *
37524164 ACGCCAATAGCCCAGCTATTGTCTTACACAAAGTCTCATATCG
1 ATGTC-ATATCCCAGATATGGTCTTACACAAA-TCTCATATCG
37524207 ATGTCATATCCCAGATATGGTCTTACAC
1 ATGTCATATCCCAGATATGGTCTTACAC
37524235 GTAATCTTAG
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
42 25 0.45
43 30 0.55
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (41 bp):
ATGTCATATCCCAGATATGGTCTTACACAAATCTCATATCG
Found at i:37527446 original size:39 final size:39
Alignment explanation
Indices: 37527362--37527472 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 39
37527352 AGATACTAAT
** *
37527362 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
37527402 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
37527442 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
37527473 GAGCTATATC
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
39 25 0.42
40 35 0.58
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:37531332 original size:11 final size:11
Alignment explanation
Indices: 37531300--37531333 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
37531290 GTATTATACA
37531300 AATGAAAAGGT
1 AATGAAAAGGT
37531311 AA-GAAAAGGT
1 AATGAAAAGGT
*
37531321 AATGAAACGGT
1 AATGAAAAGGT
37531332 AA
1 AA
37531334 GTTCAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.56, C:0.03, G:0.26, T:0.15
Consensus pattern (11 bp):
AATGAAAAGGT
Found at i:37532530 original size:5 final size:5
Alignment explanation
Indices: 37532522--37532548 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
37532512 AAAGCCAAAA
37532522 ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT AT
37532549 GGTTGGCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:37535469 original size:43 final size:42
Alignment explanation
Indices: 37535407--37535572 Score: 140
Period size: 43 Copynumber: 3.9 Consensus size: 42
37535397 TACAACACCA
* *
37535407 ATGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCC
1 ATGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCC
* * *
37535449 ACTGTCCTAGACATGGTCTTACACG-AACTTATATAT-GATGCC
1 A-TGTCCCAGACATGGTCTTACACGTAA-TCACATATCGATGCC
* * * * *
37535491 GATG-CCTCAGACATTGTCTTACATGTAAATTACAAATCAATGCC
1 -ATGTCC-CAGACATGGTCTTACACGT-AATCACATATCGATGCC
** *
37535535 AATGTCCCAGATGTGGTCTTACACGAAATCACATATCG
1 -ATGTCCCAGACATGGTCTTACACGTAATCACATATCG
37535573 GAACCTTATG
Statistics
Matches: 96, Mismatches: 20, Indels: 15
0.73 0.15 0.11
Matches are distributed among these distances:
41 2 0.02
42 26 0.27
43 42 0.44
44 24 0.25
45 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCC
Found at i:37536923 original size:19 final size:19
Alignment explanation
Indices: 37536887--37536925 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
37536877 TTTTCATCAT
* *
37536887 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
37536906 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
37536925 A
1 A
37536926 TAATTAAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:37537433 original size:28 final size:29
Alignment explanation
Indices: 37537360--37537447 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
37537350 AGCATGGCTG
* * * *
37537360 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
37537387 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
37537416 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
37537444 CCAG
1 CCAG
37537448 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 12 0.24
28 25 0.49
29 14 0.27
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Done.