Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102106374
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3186644 characters in sequence are not A, C, G, or T
File 113 of 311
Found at i:37537600 original size:28 final size:28
Alignment explanation
Indices: 37537553--37537617 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
37537543 AAATTAACCC
*
37537553 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
37537581 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
37537609 TAGGGGTAT
1 TAGGGGTAT
37537618 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:37544752 original size:19 final size:19
Alignment explanation
Indices: 37544716--37544754 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
37544706 TTTTCATCAT
* *
37544716 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
37544735 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
37544754 A
1 A
37544755 TAATTAAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:37545265 original size:28 final size:29
Alignment explanation
Indices: 37545192--37545279 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
37545182 AGCATGGCTG
* * * *
37545192 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
37545219 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
37545248 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
37545276 CCAG
1 CCAG
37545280 GACGCTTACT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 12 0.24
28 25 0.49
29 14 0.27
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Found at i:37545431 original size:28 final size:28
Alignment explanation
Indices: 37545387--37545444 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
37545377 ATTAACCCTA
*
37545387 GGGTATAAAGGTCATTTAGCATACATAG
1 GGGTATAAAGGTAATTTAGCATACATAG
* *
37545415 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAAAGGTAATTTAGCATACATAG
37545443 GG
1 GG
37545445 TATTCTAGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.31
Consensus pattern (28 bp):
GGGTATAAAGGTAATTTAGCATACATAG
Found at i:37545974 original size:21 final size:23
Alignment explanation
Indices: 37545932--37545975 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
37545922 TCCGATAGCT
*
37545932 AGATCCAAGTCTCTTCGCTCCAA
1 AGATCCAAGTCTCTTCGATCCAA
37545955 AGATCCAAG-C-CTTCGATCCAA
1 AGATCCAAGTCTCTTCGATCCAA
37545976 CCCTTGAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 10 0.50
22 1 0.05
23 9 0.45
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.23
Consensus pattern (23 bp):
AGATCCAAGTCTCTTCGATCCAA
Found at i:37549360 original size:46 final size:45
Alignment explanation
Indices: 37549310--37549482 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
37549300 GTTGAGCATC
37549310 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTT
* * *
37549356 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCATT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G--TT
* * **
37549403 CGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTT
*
37549449 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
37549483 GGCGGGTTAC
Statistics
Matches: 106, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.54
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGTT
Found at i:37549469 original size:93 final size:93
Alignment explanation
Indices: 37549305--37549475 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
37549295 GGATGGTTGA
* * **
37549305 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
37549370 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
37549398 GCATTCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
37549463 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
37549476 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37556943 original size:46 final size:45
Alignment explanation
Indices: 37556893--37557065 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
37556883 GTTGAGCATC
37556893 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTT
* * * **
37556939 CGAACTCGTTGAGTTGAGTCCGATTTC-GTGA-GAT-ATAACTAGGCATT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G--TT
* *
37556986 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-C
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTT
* *
37557031 CTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTAGG
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
37557066 GGCGGGTTAC
Statistics
Matches: 103, Mismatches: 14, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 6 0.06
46 55 0.53
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGTT
Found at i:37564798 original size:25 final size:25
Alignment explanation
Indices: 37564751--37564798 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
37564741 GTCCATTCCC
*
37564751 AAAATAACATCAAATTCATCAAATG
1 AAAATAACATCAAATTCACCAAATG
37564776 AAAATAACATCAAA-TCAGCCAAA
1 AAAATAACATCAAATTCA-CCAAA
37564799 AAGTAATAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.58, C:0.19, G:0.04, T:0.19
Consensus pattern (25 bp):
AAAATAACATCAAATTCACCAAATG
Found at i:37567728 original size:62 final size:63
Alignment explanation
Indices: 37567649--37567771 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 63
37567639 TTTGCCCTTA
37567649 ACTTTTCAACATTTTACAATTAAGTCCCTAGGCTTTTAAAATGAATTTCATTCAATTTCATAG
1 ACTTTTCAACATTTTACAATTAAGTCCCTAGGCTTTTAAAATGAATTTCATTCAATTTCATAG
37567712 ACTTTT-AACATTTTACAATTAAGTCCCTAGGCTTTTAAAATGAATTTCATTCAATTTCAT
1 ACTTTTCAACATTTTACAATTAAGTCCCTAGGCTTTTAAAATGAATTTCATTCAATTTCAT
37567772 TAAATTGAAT
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
62 54 0.90
63 6 0.10
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.42
Consensus pattern (63 bp):
ACTTTTCAACATTTTACAATTAAGTCCCTAGGCTTTTAAAATGAATTTCATTCAATTTCATAG
Found at i:37567749 original size:30 final size:30
Alignment explanation
Indices: 37567650--37567749 Score: 96
Period size: 30 Copynumber: 3.2 Consensus size: 30
37567640 TTGCCCTTAA
37567650 CTTTTCAACATTTTACAATTAAGTCCCTAGG
1 CTTTT-AACATTTTACAATTAAGTCCCTAGG
* * * * *
37567681 CTTTTAAAATGAATTT-C-ATTCAATTTCATAGA
1 CTTTTAACAT---TTTACAATT-AAGTCCCTAGG
37567713 CTTTTAACATTTTACAATTAAGTCCCTAGG
1 CTTTTAACATTTTACAATTAAGTCCCTAGG
37567743 CTTTTAA
1 CTTTTAA
37567750 AATGAATTTC
Statistics
Matches: 53, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
29 3 0.06
30 19 0.36
31 11 0.21
32 17 0.32
33 3 0.06
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (30 bp):
CTTTTAACATTTTACAATTAAGTCCCTAGG
Found at i:37580938 original size:46 final size:46
Alignment explanation
Indices: 37580888--37581063 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
37580878 TGGTTGAGCA
37580888 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
37580934 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
37580979 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATCCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37581027 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37581064 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 29 0.27
48 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37581044 original size:93 final size:93
Alignment explanation
Indices: 37580885--37581055 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
37580875 GGATGGTTGA
* * * *
37580885 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATCCGAACGCCCGAACTCGTTGAGT
37580950 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
37580978 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATCCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATCCGAACGCCCGAACTCGTTGAGT
*
37581043 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
37581056 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATCCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37588610 original size:27 final size:29
Alignment explanation
Indices: 37588523--37588616 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 29
37588513 AAAGCACGAC
37588523 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
***
37588552 TGCAAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
37588581 TATGAATGAGA-TTGGG-CTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
37588608 TATGCATGT
1 TATGAATGT
37588617 ATGTAGACTT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 17 0.31
28 5 0.09
29 33 0.60
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:37590601 original size:47 final size:47
Alignment explanation
Indices: 37590538--37591159 Score: 1059
Period size: 47 Copynumber: 13.3 Consensus size: 47
37590528 CCCTTCGGGA
* *
37590538 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
37590585 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
37590632 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
37590679 CTTGTCACATATATACACTTCCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
37590726 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
37590773 CTTTTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
37590820 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
37590867 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
37590913 CTTATCACATATATACAGTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
37590960 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
37591007 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
37591053 TTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
37591100 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
37591147 CTTATCACATATA
1 CTTATCACATATA
37591160 CATATCTTGT
Statistics
Matches: 543, Mismatches: 30, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 89 0.16
47 454 0.84
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:37590734 original size:22 final size:22
Alignment explanation
Indices: 37590660--37590735 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
37590650 TTTCACATTC
37590660 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *** ** *
37590682 GTCACATATATACACTTCCACATT
1 ATCACAT-TGGCCA-TTCGGCCTT
37590706 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
37590729 ATCACAT
1 ATCACAT
37590736 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 13 0.35
23 9 0.24
24 9 0.24
25 6 0.16
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:37590807 original size:25 final size:25
Alignment explanation
Indices: 37590683--37590760 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
37590673 TTCGGCCTTG
*
37590683 TCACATATATACACTTCCACATTCA
1 TCACATATATACACTTTCACATTCA
** * * *
37590708 TCACAT-T-GGC-CATTCGGCCTT-A
1 TCACATATATACACTTTC-ACATTCA
37590730 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
37590755 TCACAT
1 TCACAT
37590761 TGGCCATTAG
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 10 0.27
23 5 0.14
24 5 0.14
25 17 0.46
ACGTcount: A:0.31, C:0.31, G:0.05, T:0.33
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:37590980 original size:140 final size:141
Alignment explanation
Indices: 37590542--37591159 Score: 1087
Period size: 140 Copynumber: 4.4 Consensus size: 141
37590532 TCGGGACTTA
* * *
37590542 TCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACCTTC
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTC
* * * *
37590607 ACATCCATCACATCGGCCATTAGGTCTTATCTCATATATACACTTTCACATTCATCACATTGGCC
66 ACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCC
*
37590672 ATTCGGCCTTG
131 ATTAGGCCTTG
*
37590683 TCACATATATACACTTCCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTC
*
37590748 ACATTCATCACATTGGCCATTAGGCCTTTTCACATATATACACTTTCACATTCATCACATTGGCC
66 ACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCC
37590813 ATTAGGCCTTG
131 ATTAGGCCTTG
37590824 TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTC
*
37590889 ACATTCATCACATTGGCCATT-GGCCTTATCACATATATACAGTTTCACATTCATCACATTGGCC
66 ACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCC
37590953 ATTAGGCCTTG
131 ATTAGGCCTTG
*
37590964 TCACATATATACACTTTCACATTCATCACATTGGCCATTCGACCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTC
*
37591029 ACATTCATCACATTGGCCATT-GGCTTTATCACATATATACACTTTCACATTCATCACATTGGCC
66 ACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCC
* *
37591093 ATTCGGCCTTA
131 ATTAGGCCTTG
37591104 TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
37591160 CATATCTTGT
Statistics
Matches: 458, Mismatches: 19, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
140 242 0.53
141 216 0.47
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (141 bp):
TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTC
ACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCC
ATTAGGCCTTG
Found at i:37600640 original size:16 final size:16
Alignment explanation
Indices: 37600615--37600651 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
37600605 GACAAATCCC
37600615 GAAATACCAAAAAGCT
1 GAAATACCAAAAAGCT
*
37600631 GAAATGCCAAAAAGCT
1 GAAATACCAAAAAGCT
*
37600647 AAAAT
1 GAAAT
37600652 TTTGGCTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.57, C:0.16, G:0.14, T:0.14
Consensus pattern (16 bp):
GAAATACCAAAAAGCT
Found at i:37611053 original size:25 final size:24
Alignment explanation
Indices: 37611010--37611066 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
37611000 TAGTATCATA
*
37611010 CGAGCTGTAAACAGCAAGCTCC-T
1 CGAGCTGAAAACAGCAAGCTCCTT
*
37611033 CTGAGCTGAATAACAGTAAGCTCCTT
1 C-GAGCTGAA-AACAGCAAGCTCCTT
37611059 CGAGCTGA
1 CGAGCTGA
37611067 GTATCGATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 1 0.03
24 7 0.24
25 19 0.66
26 2 0.07
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (24 bp):
CGAGCTGAAAACAGCAAGCTCCTT
Found at i:37611077 original size:25 final size:25
Alignment explanation
Indices: 37611060--37611116 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
37611050 AAGCTCCTTC
37611060 GAGCTGAGTATCGATAAGCTCATAT
1 GAGCTGAGTATCGATAAGCTCATAT
37611085 GAGCTGAGTATCGATAAGCTCATAT
1 GAGCTGAGTATCGATAAGCTCATAT
37611110 GAGCTGA
1 GAGCTGA
37611117 AATTGGTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (25 bp):
GAGCTGAGTATCGATAAGCTCATAT
Found at i:37614169 original size:27 final size:27
Alignment explanation
Indices: 37614139--37614295 Score: 179
Period size: 27 Copynumber: 5.8 Consensus size: 27
37614129 ATTACCAAAG
* * **
37614139 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
37614166 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
37614193 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
37614220 TACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
***
37614247 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTATTT
* *
37614274 TACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
37614296 CAAAATACCC
Statistics
Matches: 113, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 113 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:37614305 original size:54 final size:53
Alignment explanation
Indices: 37614193--37614413 Score: 160
Period size: 54 Copynumber: 4.1 Consensus size: 53
37614183 ATTACTGTTT
* *** * * ** ***
37614193 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTATAAAATTACTAAAATACCC-TGGTTTACAAAATTACCAAAA
*
37614247 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCC-TGGTTTACAAAATTACCAAAA
* * * * **
37614301 TACCCT-GGTCTGTAAAATTGCT-AAATATCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATA-CCCTGGTTTACAAAATTACCAAAA
* * * **
37614353 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAATACC-CTGGTTTACAAAATTACCAAAA
37614407 TAGCCCT
1 TA-CCCT
37614414 GCAGGGTAGA
Statistics
Matches: 136, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
52 29 0.21
53 27 0.20
54 77 0.57
55 3 0.02
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.34
Consensus pattern (53 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTGGTTTACAAAATTACCAAAA
Found at i:37614305 original size:81 final size:81
Alignment explanation
Indices: 37614109--37614306 Score: 198
Period size: 81 Copynumber: 2.4 Consensus size: 81
37614099 CCAATTATTG
* ** * * * *
37614109 AAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTACATAATTACCGTTTTACCCTCG
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCG
*
37614174 ATTTACAAAATTACTG
66 ATTTACAAAATTACTA
*** * * * *** * **
37614190 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTATTATTTTACCCTCG
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCG
37614255 ATTTACAAAATTACTA
66 ATTTACAAAATTACTA
* *
37614271 AAATACCCTTGGTTTACAAAATTACCAAAATACCCT
1 AAATACCCTCGATTTACAAAATTACCAAAATACCCT
37614307 GGTCTGTAAA
Statistics
Matches: 89, Mismatches: 28, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 89 1.00
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (81 bp):
AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCG
ATTTACAAAATTACTA
Found at i:37614317 original size:26 final size:27
Alignment explanation
Indices: 37614261--37614414 Score: 195
Period size: 27 Copynumber: 5.8 Consensus size: 27
37614251 CTCGATTTAC
* * **
37614261 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
*
37614288 AAAATTACCAAAATA-CCCTGGTCTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * *
37614314 AAAATT-GCTAAATATCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
37614340 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
37614367 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
37614394 AAAATTACCAAAATAGCCCTG
1 AAAATTACCAAAATACCCCTG
37614415 CAGGGTAGAA
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
25 6 0.06
26 29 0.27
27 74 0.68
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:37614426 original size:27 final size:27
Alignment explanation
Indices: 37614396--37614779 Score: 491
Period size: 27 Copynumber: 14.3 Consensus size: 27
37614386 TGGTTTGTAA
** * *
37614396 AATTACCAAAATAGCCCTGCAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
37614423 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
37614450 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
37614477 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*
37614504 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
37614531 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
37614558 AATTACCGGAATACCTCTGTAGGGTAT
1 AATTACCGGAATACCCCTGTAGGGTAG
*
37614585 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* * *
37614612 AATTACCAGAATACCCCTATAGGGTAA
1 AATTACCGGAATACCCCTGTAGGGTAG
***
37614639 AATTACCGGAATACAATTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
37614666 AATTACCGGAATACCCTTATAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
* *
37614693 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGGAATACCCCTGTAGGGTAG
*** * *
37614720 AATTACTAAAATACCCCTGTAGAGTGG
1 AATTACCGGAATACCCCTGTAGGGTAG
* * * *
37614747 AATTACCGGGATA-CCTTGTGGGGTAA
1 AATTACCGGAATACCCCTGTAGGGTAG
37614773 AATTACC
1 AATTACC
37614780 ATTTTGCCCC
Statistics
Matches: 311, Mismatches: 46, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
26 15 0.05
27 296 0.95
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGGAATACCCCTGTAGGGTAG
Found at i:37614427 original size:54 final size:52
Alignment explanation
Indices: 37614261--37614492 Score: 168
Period size: 54 Copynumber: 4.3 Consensus size: 52
37614251 CTCGATTTAC
* ** *
37614261 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTG-GTCTGT
1 AAAATTACCAAAATACCC-TGGTTTGTAAAATTACCAAAATACCCCTGAG--GGT
* * *
37614314 AAAATT-GCTAAATATCCCTGGTTTGTAAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCCTGAG--GGT
*
37614367 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATAGCCCTGCAGGGT
1 AAAATTACCAAAATACC-CTGGTTTGTAAAATTACCAAAATACCCCTG-AGGGT
* ** ** * **
37614421 AGAATTACCGGAATACCCCT-GTAGGGTAGAATTACCGGAATACCCCTGTAGGGT
1 AAAATTACCAAAATA-CCCTGGT-TTGTAAAATTACCAAAATACCCCTG-AGGGT
* *
37614475 AGAATTACCGAAATACCC
1 AAAATTACCAAAATACCC
37614493 CTGTAGGGTA
Statistics
Matches: 149, Mismatches: 21, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
52 26 0.17
53 31 0.21
54 88 0.59
55 2 0.01
56 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (52 bp):
AAAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCCTGAGGGT
Found at i:37614436 original size:81 final size:81
Alignment explanation
Indices: 37614288--37614780 Score: 281
Period size: 81 Copynumber: 6.1 Consensus size: 81
37614278 CTTGGTTTAC
* * * **** * **
37614288 AAAATTACCAAAATACCCTGGTCTGTAAAATT-GCTAAATATCCCTGGTTTGTAAAATTACCAAA
1 AAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAAATACCCCTGCAGGGTAGAATTACCGGA
**
37614352 ATACCCCTAGT-TTGT
66 ATACCCCTAGTAGGGT
* *
37614367 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATAGCCCTGCAGGGTAGAATTACCGG
1 AAAATTACCAAAATACC-CTGGTCTGTAAAATTACCAAAATACCCCTGCAGGGTAGAATTACCGG
37614432 AATACCCCT-GTAGGGT
65 AATACCCCTAGTAGGGT
* ** ** * * *
37614448 AGAATTACCGGAATACCCCT-GTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCG
1 AAAATTACCAAAATA-CCCTGGT-CTGTAAAATTACCAAAATACCCCTGCAGGGTAGAATTACCG
37614512 GAATACCCCTA-TAGGGT
64 GAATACCCCTAGTAGGGT
* * ** ** * ** * * *
37614529 AGAATTATCGCAATACCCCT-GTAGGGTAGAATTACCGGAATACCTCTGTAGGGTATAATTACCG
1 AAAATTACCAAAATA-CCCTGGT-CTGTAAAATTACCAAAATACCCCTGCAGGGTAGAATTACCG
*
37614593 AAATACCCCT-GTAGGGT
64 GAATACCCCTAGTAGGGT
* * * ** ** *** *
37614610 AGAATTACCAGAATACCCCT-ATAGGGTAAAATTACCGGAATACAATTGTAGGGTAGAATTACCG
1 AAAATTACCAAAATA-CCCTGGT-CTGTAAAATTACCAAAATACCCCTGCAGGGTAGAATTACCG
*
37614674 GAATACCCTTA-TAGGGT
64 GAATACCCCTAGTAGGGT
* ** ** * * * * *
37614691 AGAATTACTGAAATACCCCT-GTAGGGTAGAATTACTAAAATACCCCTGTAGAGTGGAATTACCG
1 AAAATTACCAAAATA-CCCTGGT-CTGTAAAATTACCAAAATACCCCTGCAGGGTAGAATTACCG
* * *
37614755 GGATA--CCTTGTGGGGT
64 GAATACCCCTAGTAGGGT
37614771 AAAATTACCA
1 AAAATTACCA
37614781 TTTTGCCCCT
Statistics
Matches: 346, Mismatches: 59, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
79 19 0.05
80 30 0.09
81 295 0.85
82 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAAATACCCCTGCAGGGTAGAATTACCGGA
ATACCCCTAGTAGGGT
Found at i:37615258 original size:22 final size:22
Alignment explanation
Indices: 37615206--37615270 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
37615196 TTAAGGCCTT
* *
37615206 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
37615228 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
37615250 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
37615271 ACGTACTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:37615459 original size:27 final size:27
Alignment explanation
Indices: 37615429--37615530 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
37615419 ATTCTGTTAA
* *
37615429 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
37615456 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
37615483 GTGGCTCTGCCACAATATCTGTATT-TG
1 GTGGCTCTGCCACAATATCTGT-TTCTG
* *
37615510 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
37615531 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
26 8 0.12
27 50 0.75
28 9 0.13
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:37615705 original size:6 final size:6
Alignment explanation
Indices: 37615667--37615808 Score: 51
Period size: 6 Copynumber: 22.8 Consensus size: 6
37615657 TTGCATTCAC
* * *
37615667 ATTCTG ATTTTTG ATTCTG -TTACCTG ATGCTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
37615717 -TTACCTA ATAT-TG ATTCTG ATTTTG ATTATCTT A-CCTG ATACTA ATTCTG
1 ATT--CTG AT-TCTG ATTCTG ATTCTG A-T-TCTG ATTCTG ATTCTG ATTCTG
* * *
37615767 ATTCTG ATTCT- ATCACCTA ATTCTG ATTCTA ATTCTG ATTCT
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCT
37615809 AGTTCTAATA
Statistics
Matches: 99, Mismatches: 22, Indels: 30
0.66 0.15 0.20
Matches are distributed among these distances:
5 10 0.10
6 68 0.69
7 13 0.13
8 7 0.07
9 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:37615713 original size:31 final size:31
Alignment explanation
Indices: 37615667--37615808 Score: 158
Period size: 31 Copynumber: 4.5 Consensus size: 31
37615657 TTGCATTCAC
* *
37615667 ATTCTGATTTTTGATTCTGTTACCTGATGCTG
1 ATTCTGA-TTTTGATTCTGTTACCTAATACTG
*
37615699 ATTCTGATTTTGATTCTGTTACCTAATATTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* * * *
37615730 ATTCTGATTTTGATTATCTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* * * *
37615761 ATTCTGATTCTGATTCTATCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* *
37615792 ATTCTAATTCTGATTCT
1 ATTCTGATTTTGATTCT
37615809 AGTTCTAATA
Statistics
Matches: 94, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
31 87 0.93
32 7 0.07
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTAATACTG
Found at i:37615765 original size:62 final size:62
Alignment explanation
Indices: 37615667--37615806 Score: 174
Period size: 62 Copynumber: 2.2 Consensus size: 62
37615657 TTGCATTCAC
* * * * * * *
37615667 ATTCTGATTTTTGATTCTGTTACCTGATGCTGATTCTGATTTTGATTCTGTTACCTAATAT-TG
1 ATTCTGA-TTTTGATTATCTTACCTGATACTAATTCTGATTCTGATTCTATCACCTAAT-TCTG
37615730 ATTCTGATTTTGATTATCTTACCTGATACTAATTCTGATTCTGATTCTATCACCTAATTCTG
1 ATTCTGATTTTGATTATCTTACCTGATACTAATTCTGATTCTGATTCTATCACCTAATTCTG
* *
37615792 ATTCTAATTCTGATT
1 ATTCTGATTTTGATT
37615807 CTAGTTCTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
61 1 0.01
62 59 0.88
63 7 0.10
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.49
Consensus pattern (62 bp):
ATTCTGATTTTGATTATCTTACCTGATACTAATTCTGATTCTGATTCTATCACCTAATTCTG
Found at i:37615776 original size:12 final size:12
Alignment explanation
Indices: 37615752--37615814 Score: 65
Period size: 12 Copynumber: 5.2 Consensus size: 12
37615742 ATTATCTTAC
*
37615752 CTGATACTAATT
1 CTGATTCTAATT
*
37615764 CTGATTCTGATT
1 CTGATTCTAATT
*
37615776 CT-ATCACCTAATT
1 CTGAT--TCTAATT
37615789 CTGATTCTAATT
1 CTGATTCTAATT
*
37615801 CTGATTCTAGTT
1 CTGATTCTAATT
37615813 CT
1 CT
37615815 AATAATGTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
11 2 0.05
12 31 0.74
13 7 0.17
14 2 0.05
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.46
Consensus pattern (12 bp):
CTGATTCTAATT
Found at i:37619280 original size:20 final size:20
Alignment explanation
Indices: 37619257--37619348 Score: 85
Period size: 20 Copynumber: 4.3 Consensus size: 20
37619247 GAGGCAAGTT
* * *
37619257 AAATGTCATGAAGGCTGACA
1 AAATGCCATAAAGGCTAACA
37619277 AAATGCCATAAAGGCTAACAA
1 AAATGCCATAAAGGCTAAC-A
*
37619298 AATATGCCATAAAGGGTAAATCA
1 AA-ATGCCATAAAGGCT-AA-CA
*
37619321 AATTATGCCATAAAGGCTAGCA
1 AA--ATGCCATAAAGGCTAACA
37619343 AAATGC
1 AAATGC
37619349 TACATAGGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
20 20 0.33
21 3 0.05
22 17 0.28
23 6 0.10
24 15 0.25
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (20 bp):
AAATGCCATAAAGGCTAACA
Found at i:37619327 original size:24 final size:22
Alignment explanation
Indices: 37619267--37619346 Score: 92
Period size: 22 Copynumber: 3.6 Consensus size: 22
37619257 AAATGTCATG
*
37619267 AAGGCTGAC-AAA-ATGCCATA
1 AAGGCTAACAAAATATGCCATA
37619287 AAGGCTAACAAAATATGCCATA
1 AAGGCTAACAAAATATGCCATA
* *
37619309 AAGGGTAAATCAAATTATGCCATA
1 AAGGCT-AA-CAAAATATGCCATA
*
37619333 AAGGCTAGCAAAAT
1 AAGGCTAACAAAAT
37619347 GCTACATAGG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
20 8 0.16
21 3 0.06
22 18 0.36
23 3 0.06
24 18 0.36
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.19
Consensus pattern (22 bp):
AAGGCTAACAAAATATGCCATA
Found at i:37622547 original size:30 final size:30
Alignment explanation
Indices: 37622511--37622568 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
37622501 ACATGATTCA
37622511 AGAATTAATCATCAATGTAACAAAATTTTC
1 AGAATTAATCATCAATGTAACAAAATTTTC
37622541 AGAATTAATCATCAATGTAACAAAATTT
1 AGAATTAATCATCAATGTAACAAAATTT
37622569 CAAAACACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (30 bp):
AGAATTAATCATCAATGTAACAAAATTTTC
Found at i:37633623 original size:107 final size:107
Alignment explanation
Indices: 37633437--37633638 Score: 386
Period size: 107 Copynumber: 1.9 Consensus size: 107
37633427 TAGTCCCCAA
37633437 AATTGCCAAATATCAACAAGCATAACATGTTTATATTTAATCACATAACCAAGCCATATGCACAT
1 AATTGCCAAATATCAACAAGCATAACATGTTTATATTTAATCACATAACCAAGCCATATGCACAT
*
37633502 TGATATATACATAACGACATCAACCTAAACTCACAACCCCGT
66 TGATATATACATAACCACATCAACCTAAACTCACAACCCCGT
37633544 AATTGCCAAATATCAACAAGCATAACATGTTTATATTTAATCACATAACCAAGCCATATGCACAT
1 AATTGCCAAATATCAACAAGCATAACATGTTTATATTTAATCACATAACCAAGCCATATGCACAT
*
37633609 TGATATATACATAACCACCTCAACCTAAAC
66 TGATATATACATAACCACATCAACCTAAAC
37633639 AGGCCAACTC
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 93 1.00
ACGTcount: A:0.43, C:0.25, G:0.07, T:0.26
Consensus pattern (107 bp):
AATTGCCAAATATCAACAAGCATAACATGTTTATATTTAATCACATAACCAAGCCATATGCACAT
TGATATATACATAACCACATCAACCTAAACTCACAACCCCGT
Found at i:37642465 original size:39 final size:39
Alignment explanation
Indices: 37642261--37642483 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
37642251 TTGAATGCTG
* * * * * *
37642261 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
37642301 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
37642341 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
37642381 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
37642421 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
37642460 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37642484 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:37642503 original size:79 final size:80
Alignment explanation
Indices: 37642341--37642518 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
37642331 AGATACAAGT
* * * *
37642341 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
37642406 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
37642421 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
37642485 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
37642500 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37642519 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:37647264 original size:16 final size:16
Alignment explanation
Indices: 37647245--37647275 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37647235 CTTCTTCACT
37647245 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
37647261 TACTTACTTACTTAA
1 TACTCACTTACTTAA
37647276 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:37647281 original size:20 final size:20
Alignment explanation
Indices: 37647242--37647281 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37647232 AAACTTCTTC
* *
37647242 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
37647262 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
37647282 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:37650191 original size:27 final size:27
Alignment explanation
Indices: 37650099--37650254 Score: 156
Period size: 27 Copynumber: 5.7 Consensus size: 27
37650089 AAATTGTACA
*
37650099 GCACTAAGTGTGCG-ATTCGACTATGTTT
1 GCACTAAGTGTGCGAATT-GACTATG-TG
*
37650127 GCACTAAGTGTGCGAA-TGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
37650153 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
37650180 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
37650208 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
37650235 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
37650255 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
26 16 0.15
27 54 0.50
28 37 0.34
29 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:37650212 original size:81 final size:82
Alignment explanation
Indices: 37650099--37650254 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 82
37650089 AAATTGTACA
* * * *
37650099 GCACTAAGTGTGCGATTCGACTATGTTTGCACTAAGTGTGCGA-ATGAATATGAT-GCACTAAGT
1 GCACTAAGTGTGCGAGTCAACTATGTTAGCACTAAGTGTGCGATATGAATACG-TGGCACTAAGT
37650162 GTGCGAATTGACCATGCG
65 GTGCGAATTGACCATGCG
* *
37650180 GCACTAAGTGTGCGAGTCTAACTATG-TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGT
1 GCACTAAGTGTGCGAGTC-AACTATGTTAGCACTAAGTGTGCGATATGAATACGTGGCACTAAGT
*
37650244 GTGCGAGTTGA
65 GTGCGAATTGA
37650255 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
81 34 0.52
82 31 0.48
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (82 bp):
GCACTAAGTGTGCGAGTCAACTATGTTAGCACTAAGTGTGCGATATGAATACGTGGCACTAAGTG
TGCGAATTGACCATGCG
Found at i:37650222 original size:55 final size:52
Alignment explanation
Indices: 37650098--37650251 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
37650088 TAAATTGTAC
* *
37650098 AGCACTAAGTGTGCG-ATTCGACTATGTTTGCACTAAGTGTGCGAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATG-TGGCACTAAGTGTGCGAGTGAATATG
* * *
37650151 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
37650206 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
37650252 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 17 0.20
54 22 0.26
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:37650265 original size:27 final size:26
Alignment explanation
Indices: 37650091--37650275 Score: 97
Period size: 27 Copynumber: 6.8 Consensus size: 26
37650081 GCGGGATTAA
*
37650091 ATTGTACAGCACTAAGTGTGCGATTCG
1 ATTGTATAGCACTAAGTGTGCGATT-G
* *
37650118 ACTATGT-TTGCACTAAGTGTGCGAATG
1 A-T-TGTATAGCACTAAGTGTGCGATTG
37650145 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCG-ATTG
*** *** *
37650172 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGA-T-TG
* * *
37650200 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGA-TTG
*** *
37650227 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGA-TTG
*
37650254 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
37650276 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 24, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
26 16 0.13
27 66 0.53
28 40 0.32
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
ATTGTATAGCACTAAGTGTGCGATTG
Found at i:37650272 original size:82 final size:81
Alignment explanation
Indices: 37650091--37650275 Score: 203
Period size: 82 Copynumber: 2.3 Consensus size: 81
37650081 GCGGGATTAA
* * * *
37650091 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTTGCACTAAGTGTGCGAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTTAGCACTAAGTGTGCGAATGAATACGATGCA
37650156 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * * *
37650172 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATG-TAGCACTAAGTGTGCGATTTGATTACG-TG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTTAGCACTAAGTGTGCGA-ATGAATACGAT-
*
37650235 GCACTAAGTGTGCGAGTTG
63 GCACTAAGTGTGCGAATTG
* *
37650254 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
37650276 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 19, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
81 37 0.45
82 45 0.55
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTTAGCACTAAGTGTGCGAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:37662874 original size:82 final size:81
Alignment explanation
Indices: 37662758--37662913 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
37662748 AAATTGTACA
* * * *
37662758 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
37662822 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37662839 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
37662904 TGCGAGTTGA
65 TGCGAATTGA
37662914 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37662881 original size:55 final size:52
Alignment explanation
Indices: 37662757--37662910 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
37662747 TAAATTGTAC
* *
37662757 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
37662810 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
37662865 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
37662911 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:37662915 original size:27 final size:27
Alignment explanation
Indices: 37662758--37662913 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
37662748 AAATTGTACA
*
37662758 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
37662785 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
37662812 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
37662839 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
37662867 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
37662894 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
37662914 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:37662924 original size:27 final size:27
Alignment explanation
Indices: 37662750--37662934 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
37662740 GCGGGATTAA
*
37662750 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
37662777 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
37662804 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
37662831 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
37662859 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
37662886 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
37662913 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
37662935 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:37662925 original size:82 final size:81
Alignment explanation
Indices: 37662750--37662934 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
37662740 GCGGGATTAA
* * * *
37662750 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
37662815 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
37662831 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
37662895 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
37662913 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
37662935 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:37672637 original size:16 final size:16
Alignment explanation
Indices: 37672618--37672648 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37672608 CTTCTTCACT
37672618 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
37672634 TACTTACTTACTTAA
1 TACTCACTTACTTAA
37672649 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:37672654 original size:20 final size:20
Alignment explanation
Indices: 37672615--37672654 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37672605 AAACTTCTTC
* *
37672615 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
37672635 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
37672655 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:37684780 original size:94 final size:94
Alignment explanation
Indices: 37684619--37684835 Score: 262
Period size: 94 Copynumber: 2.3 Consensus size: 94
37684609 ATTTGTTTGT
* * *
37684619 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAGAGCCAGTGTAAGACTGTG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCGTG
37684684 TCTGGGACATGGCATCAGCATTGAGACGA
66 TCTGGGACATGGCATCAGCATTGAGACGA
* * * * *
37684713 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCTACGA-GATGATAGTCAGTTTAAGACCGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCCAGTGTAAGACCGT
*
37684777 GTCTGGGACATGGCATC-G-ACTTGAGA-TA
65 GTCTGGGACATGGCATCAGCA-TTGAGACGA
* * *
37684805 TGACCCAGTGTAAGACCGTGTCTGGGACATG
1 -GAGCTAGTGTAAGA-CATGTCTGGGACATG
37684836 GCGTCGGGAC
Statistics
Matches: 106, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
92 2 0.02
93 19 0.18
94 84 0.79
95 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (94 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCGTG
TCTGGGACATGGCATCAGCATTGAGACGA
Found at i:37684784 original size:47 final size:47
Alignment explanation
Indices: 37684619--37684835 Score: 185
Period size: 47 Copynumber: 4.6 Consensus size: 47
37684609 ATTTGTTTGT
* * * * *
37684619 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATTGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACCGTGTCTGGGACATGCATCGGCTACGA-GATGA
* * * *
37684665 GAGCCAGTGTAAGACTGTGTCTGGGACATGGCATCAGC-ATTGAGACGA
1 GAGCCAGTGTAAGACCGTGTCTGGGACAT-GCATCGGCTA-CGAGATGA
* * *
37684713 GAGCTAGTGTAAGA-CATGTTTGGGACATGCATCGGCTACGAGATGA
1 GAGCCAGTGTAAGACCGTGTCTGGGACATGCATCGGCTACGAGATGA
* * * * *
37684759 TAGTCAGTTTAAGACCGTGTCTGGGACATGGCATCGACT-TGAGAT-A
1 GAGCCAGTGTAAGACCGTGTCTGGGACAT-GCATCGGCTACGAGATGA
*
37684805 TGACCCAGTGTAAGACCGTGTCTGGGACATG
1 -GAGCCAGTGTAAGACCGTGTCTGGGACATG
37684836 GCGTCGGGAC
Statistics
Matches: 136, Mismatches: 27, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
46 38 0.28
47 67 0.49
48 30 0.22
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCGTGTCTGGGACATGCATCGGCTACGAGATGA
Found at i:37695814 original size:39 final size:39
Alignment explanation
Indices: 37695766--37695985 Score: 250
Period size: 40 Copynumber: 5.6 Consensus size: 39
37695756 TATTCGGATG
* *
37695766 ATATTCGGGCTAAGTCCCGAAGGCATGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTAGTGACT
*
37695805 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACT
* * *
37695845 ATACCCGGGCTAAGT-CCGAAGGCGTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGC-ATTGTGCTAG-TGACT
* *
37695884 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGC-ATTGTGCTAGTGACT
* * *
37695924 ATATCGGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAG-TGACT
*
37695964 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37695986 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 19, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
39 71 0.46
40 82 0.53
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTAGTGACT
Found at i:37695907 original size:79 final size:78
Alignment explanation
Indices: 37695771--37695985 Score: 272
Period size: 79 Copynumber: 2.7 Consensus size: 78
37695761 GGATGATATT
* * *
37695771 CGGGCTAAGTCCCGAAGGCATGGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGGCAGTTGT
1 CGGGCTAAGT-CCGAAGGCTTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCAGTTGT
*
37695835 GCTATTGACTATACC
64 GCTAGTGACTATACC
* **
37695850 CGGGCTAAGTCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCAAAGGCTTTTGTG
1 CGGGCTAAGTCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTGTG
*
37695915 CTAGTGACTATATC
65 CTAGTGACTATACC
* * *
37695929 GGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 CGGGCTAAG-TCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
37695986 TACTTGGGTT
Statistics
Matches: 120, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
78 8 0.07
79 81 0.68
80 31 0.26
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (78 bp):
CGGGCTAAGTCCGAAGGCTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGC
TAGTGACTATACC
Found at i:37704341 original size:40 final size:40
Alignment explanation
Indices: 37704252--37704472 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 40
37704242 TATTCGGATG
* *
37704252 ATATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
37704291 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* *
37704331 ATA-CCTGGGCTAAGTCTCGAAGGC-GTTTGTGCGAGTTG-CT
1 ATATCC-GGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
** *
37704371 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
37704411 ATAT-CGAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCG-GGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
*
37704451 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
37704473 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 14, Indels: 20
0.82 0.07 0.10
Matches are distributed among these distances:
39 46 0.29
40 104 0.66
41 8 0.05
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:37704390 original size:80 final size:78
Alignment explanation
Indices: 37704256--37704472 Score: 285
Period size: 80 Copynumber: 2.7 Consensus size: 78
37704246 CGGATGATAT
* * *
37704256 CCGGGCTAAGTCCCGAAGGCATGGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGGCAGTTG
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCAGTTG
*
37704320 TGCTATTGACTATA
65 TGCTAGTGACTATA
* **
37704334 CCTGGGCTAAGTCTCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCTTTT
1 CC-GGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTT
37704399 GTGCTAGTGACTATA
64 GTGCTAGTGACTATA
* * *
37704414 TCGAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 CCG-GGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
37704473 TACTTGGGTT
Statistics
Matches: 123, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
78 2 0.02
79 33 0.27
80 86 0.70
81 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTGT
GCTAGTGACTATA
Found at i:37707624 original size:36 final size:36
Alignment explanation
Indices: 37707577--37707650 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
37707567 TGTGAGCTAG
37707577 TGTAAGACATGTCTGGGACATGCATCAGCCACATTA
1 TGTAAGACATGTCTGGGACATGCATCAGCCACATTA
37707613 TGTAAGACATGTCTGGGACATGCATCAGCCACATTA
1 TGTAAGACATGTCTGGGACATGCATCAGCCACATTA
37707649 TG
1 TG
37707651 AGAGCCAGTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (36 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCACATTA
Found at i:37707673 original size:47 final size:46
Alignment explanation
Indices: 37707613--37707785 Score: 140
Period size: 47 Copynumber: 3.7 Consensus size: 46
37707603 AGCCACATTA
37707613 TGTAAGACATGTCTGGGACAT-GCATCAGCCACATTATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGGCATCAG-CACATTATGAGAGCCAG
* * * *
37707659 TGTAAGACTGTGTCTGGGACATGGCATCTG--CATTGAGACGAGAGCTAG
1 TGTAAGAC-ATGTCTGGGACATGGCATCAGCACATT---ATGAGAGCCAG
** * * *
37707707 TGTAAGACATGTCTGGGACAT-GCATTGGCTAC-TAGATGATAGTCAG
1 TGTAAGACATGTCTGGGACATGGCATCAGC-ACAT-TATGAGAGCCAG
* *
37707753 TGTAAGACCGTGTCTGGGACATGGCATCGGCAC
1 TGTAAGA-CATGTCTGGGACATGGCATCAGCAC
37707786 CTTACCACAT
Statistics
Matches: 102, Mismatches: 14, Indels: 21
0.74 0.10 0.15
Matches are distributed among these distances:
45 4 0.04
46 27 0.26
47 39 0.38
48 31 0.30
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGGCATCAGCACATTATGAGAGCCAG
Found at i:37707709 original size:48 final size:48
Alignment explanation
Indices: 37707650--37707780 Score: 146
Period size: 47 Copynumber: 2.8 Consensus size: 48
37707640 GCCACATTAT
* *
37707650 GAGAGCCAGTGTAAGACTGTGTCTGGGACATGGCATCT-GC-ATTGAGAC
1 GAGAGCTAGTGTAAGAC-GTGTCTGGGACATGGCATCTGGCTACT-AGAC
* *
37707698 GAGAGCTAGTGTAAGACATGTCTGGGACAT-GCAT-TGGCTACTAGAT
1 GAGAGCTAGTGTAAGACGTGTCTGGGACATGGCATCTGGCTACTAGAC
*
37707744 GATAG-TCAGTGTAAGACCGTGTCTGGGACATGGCATC
1 GAGAGCT-AGTGTAAGA-CGTGTCTGGGACATGGCATC
37707781 GGCACCTTAC
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
45 2 0.03
46 22 0.31
47 27 0.38
48 20 0.28
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (48 bp):
GAGAGCTAGTGTAAGACGTGTCTGGGACATGGCATCTGGCTACTAGAC
Found at i:37708541 original size:24 final size:24
Alignment explanation
Indices: 37708512--37708588 Score: 75
Period size: 24 Copynumber: 3.0 Consensus size: 24
37708502 GGTCTTGGTC
37708512 AATTATAGTTTAATTGTTAAAAGA
1 AATTATAGTTTAATTGTTAAAAGA
* *
37708536 AATTATTA-TTTAACCTAGGGGTAAAAGA
1 AATTA-TAGTTTAA--T--TGTTAAAAGA
*
37708564 AATTATAGTTTAATTATTAAAAGA
1 AATTATAGTTTAATTGTTAAAAGA
37708588 A
1 A
37708589 CCCTAATGGC
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
24 18 0.43
25 2 0.05
26 2 0.05
27 2 0.05
28 18 0.43
ACGTcount: A:0.47, C:0.03, G:0.13, T:0.38
Consensus pattern (24 bp):
AATTATAGTTTAATTGTTAAAAGA
Found at i:37728926 original size:13 final size:13
Alignment explanation
Indices: 37728910--37728965 Score: 59
Period size: 13 Copynumber: 4.7 Consensus size: 13
37728900 CCAATTATGT
37728910 ATATTAATTCATA
1 ATATTAATTCATA
37728923 ATA-TAA-T--TA
1 ATATTAATTCATA
* *
37728932 ATTTTAATTTATA
1 ATATTAATTCATA
37728945 ATATTAATTCATA
1 ATATTAATTCATA
37728958 ATA-TAATT
1 ATATTAATT
37728966 AATTTTAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
9 4 0.11
10 3 0.08
11 2 0.06
12 8 0.22
13 19 0.53
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (13 bp):
ATATTAATTCATA
Found at i:37728949 original size:35 final size:35
Alignment explanation
Indices: 37728910--37728979 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
37728900 CCAATTATGT
37728910 ATATTAATTCATAATATAATTAATTTTAATTTATA
1 ATATTAATTCATAATATAATTAATTTTAATTTATA
37728945 ATATTAATTCATAATATAATTAATTTTAATTTATA
1 ATATTAATTCATAATATAATTAATTTTAATTTATA
37728980 CCCAATTTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (35 bp):
ATATTAATTCATAATATAATTAATTTTAATTTATA
Found at i:37730056 original size:31 final size:31
Alignment explanation
Indices: 37730018--37730081 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
37730008 ATAGTCTTTT
37730018 ATGTGCTTATTAGATTTAATTAATCGGTTGA
1 ATGTGCTTATTAGATTTAATTAATCGGTTGA
37730049 ATGTGCTTATTAGATTTAATTAATCGGTTGA
1 ATGTGCTTATTAGATTTAATTAATCGGTTGA
37730080 AT
1 AT
37730082 TGACATAGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.30, C:0.06, G:0.19, T:0.45
Consensus pattern (31 bp):
ATGTGCTTATTAGATTTAATTAATCGGTTGA
Found at i:37733782 original size:79 final size:80
Alignment explanation
Indices: 37733619--37733843 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 80
37733609 TTGAATGATG
* * * * * * *
37733619 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCAAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
37733682 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
*
37733699 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCA
*
37733760 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
** *
37733778 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
37733843 G
66 G
37733844 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
78 2 0.02
79 67 0.54
80 46 0.37
81 9 0.07
82 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:37733807 original size:40 final size:40
Alignment explanation
Indices: 37733619--37733843 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
37733609 TTGAATGATG
* * * *
37733619 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37733659 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
37733699 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
37733739 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37733778 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37733819 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37733844 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 35 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37733835 original size:119 final size:120
Alignment explanation
Indices: 37733619--37733843 Score: 282
Period size: 119 Copynumber: 1.9 Consensus size: 120
37733609 TTGAATGATG
*
37733619 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCAAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCATTT
37733684 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * ** *
37733739 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCAAAGGCAT
* *
37733801 TTGTGCGA-ATTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGA-TACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
37733844 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
118 3 0.03
119 68 0.75
120 20 0.22
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCATTT
GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:37733865 original size:79 final size:79
Alignment explanation
Indices: 37733675--37733876 Score: 200
Period size: 79 Copynumber: 2.6 Consensus size: 79
37733665 CTAAGATCCA
** **
37733675 AAGGCATTTGTGCGAGAT-ACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 AAGGCATTTGAACGAG-TGACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGATACTAA
*
37733738 TTCCGGGCTAAGCCCG
64 TACCGGGCTAAGCCCG
** * *
37733754 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 AAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-TACTAAT
*
37733817 AACCGGGCTATGTCCCG
65 -ACCGGGCTAAG-CCCG
* *
37733834 AAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 AAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
37733877 TACGTGATTT
Statistics
Matches: 106, Mismatches: 11, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
78 5 0.05
79 76 0.72
80 25 0.24
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (79 bp):
AAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAATA
CCGGGCTAAGCCCG
Found at i:37740320 original size:27 final size:27
Alignment explanation
Indices: 37740290--37740462 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
37740280 ATATTAAGTC
* *
37740290 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
37740317 CGCAC-CTTAGTGCTACAT-ATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
37740343 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** *
37740370 CGCACACTTAGTGC--CGATGGTCAATT
1 CGCACACTTAGTGCTAC-ATAATCAACT
* **
37740396 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
37740423 CGCACACTTAGTGCAACATAGT-AA-T
1 CGCACACTTAGTGCTACATAATCAACT
37740448 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37740463 GTACAATTTA
Statistics
Matches: 128, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
25 19 0.15
26 43 0.34
27 62 0.48
28 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37740370 original size:53 final size:51
Alignment explanation
Indices: 37740290--37740462 Score: 174
Period size: 53 Copynumber: 3.3 Consensus size: 51
37740280 ATATTAAGTC
* *
37740290 CGCACACTCAGTGCTATATAATCAACTCGCAC-CTTAGTGCTACATATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGC-ACATATC-AA-T
* *
37740343 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC-CGATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAC-AT-ATCAA-T
* **
37740396 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGT-AAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGC-ACATA-TCAAT
37740448 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37740463 GTACAATTTA
Statistics
Matches: 103, Mismatches: 9, Indels: 16
0.80 0.07 0.12
Matches are distributed among these distances:
52 17 0.17
53 72 0.70
54 13 0.13
55 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (51 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCACATATCAAT
Found at i:37748194 original size:55 final size:54
Alignment explanation
Indices: 37748110--37748260 Score: 194
Period size: 55 Copynumber: 2.8 Consensus size: 54
37748100 ATATTAAGTC
* * *
37748110 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
** ** **
37748165 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCATTT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
* *
37748219 CGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
37748261 GTACAATTTA
Statistics
Matches: 84, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
54 41 0.49
55 43 0.51
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:37748215 original size:27 final size:27
Alignment explanation
Indices: 37748110--37748260 Score: 194
Period size: 27 Copynumber: 5.6 Consensus size: 27
37748100 ATATTAAGTC
* * *
37748110 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
37748137 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
37748165 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * **
37748192 CGCACACTTAGTGCCGCATGGTCATTT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
37748219 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
37748246 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37748261 GTACAATTTA
Statistics
Matches: 109, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 83 0.76
28 26 0.24
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:37752597 original size:79 final size:80
Alignment explanation
Indices: 37752436--37752660 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 80
37752426 TTGAATGATG
* * * * * *
37752436 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
37752499 TTGCGCGAGATACTAAA
64 TTGCGCGAGATACTAAA
*
37752516 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCA
* *
37752577 TTTGTGCGAGTTACTAAA
63 TTTGCGCGAGATACTAAA
** *
37752595 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
37752660 G
66 G
37752661 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
78 2 0.02
79 67 0.54
80 46 0.37
81 9 0.07
82 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GCGCGAGATACTAAA
Found at i:37752624 original size:40 final size:40
Alignment explanation
Indices: 37752436--37752660 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
37752426 TTGAATGATG
* * * *
37752436 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37752476 TCCGGACTAAGAT-CCGAAGGCATTTGCGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
37752516 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
37752556 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37752595 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37752636 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37752661 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 35 0.21
40 120 0.73
41 9 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37752652 original size:119 final size:120
Alignment explanation
Indices: 37752436--37752660 Score: 282
Period size: 119 Copynumber: 1.9 Consensus size: 120
37752426 TTGAATGATG
*
37752436 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
37752501 GCGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GCGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
37752556 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
37752618 TTGTGCGA-ATTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGCGCGAGA-TACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
37752661 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
118 3 0.03
119 68 0.75
120 20 0.22
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GCGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:37752682 original size:79 final size:78
Alignment explanation
Indices: 37752443--37752693 Score: 235
Period size: 79 Copynumber: 3.2 Consensus size: 78
37752433 ATGTCCGGGC
* * * * *
37752443 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGCGCG
1 TAAGTCCCGAAGGCATTTGTGCGAA-TTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGAGCG
* *
37752506 AGATACTAAATCCGGAC
64 AG-GACTAAATCCGG-T
*
37752523 TAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGC
1 TAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGAGC
*
37752584 GAGTTACTAAATCCGGGT
63 GAG-GACTAAATCC-GGT
* * *
37752602 TAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
*
37752667 GAGCTATATCCGGT
66 GA-CTAAATCCGGT
* *
37752681 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
37752694 TACGTGATTT
Statistics
Matches: 145, Mismatches: 15, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
78 2 0.01
79 80 0.55
80 53 0.37
81 9 0.06
82 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
GACTAAATCCGGT
Found at i:37756971 original size:40 final size:40
Alignment explanation
Indices: 37756873--37757135 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
37756863 TCCTCGTTCA
* * * * *
37756873 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
37756912 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37756952 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37756992 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37757032 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
37757072 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
37757112 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37757136 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37764912 original size:40 final size:40
Alignment explanation
Indices: 37764814--37765076 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
37764804 TCCTCGTTCA
* * * * *
37764814 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
37764853 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37764893 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37764933 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37764973 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
37765013 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
37765053 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37765077 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37772314 original size:39 final size:38
Alignment explanation
Indices: 37772265--37772470 Score: 277
Period size: 39 Copynumber: 5.3 Consensus size: 38
37772255 CGGGACTTTA
*
37772265 AGCCCAGATATAATACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTC-GGACTT
* ** *
37772304 AGCCCTGATATAACGCTAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTC-GGACTT
* **
37772343 AGCTCGGATATAGCACCAGCACGAATGCCTTCGGAACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCGG-ACTT
*
37772382 AGCCCGGATATAATACCAGCACGAATGCCTTCAAGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTC-GGACTT
37772421 AGCCCGGATATAATACCAGCACGAATGCCTTCGAGACTT
1 AGCCCGGATATAATACCAGCACGAATGCCTTCG-GACTT
*
37772460 AGCCCAGATAT
1 AGCCCGGATAT
37772471 TTTTCCAACA
Statistics
Matches: 148, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 2 0.01
39 145 0.98
40 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (38 bp):
AGCCCGGATATAATACCAGCACGAATGCCTTCGGACTT
Found at i:37772506 original size:117 final size:118
Alignment explanation
Indices: 37772253--37772519 Score: 306
Period size: 117 Copynumber: 2.3 Consensus size: 118
37772243 CCACAAAGCA
* * *
37772253 TGCGGGACTTTAAGCCCAGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCTGATATAAC
1 TGCGGG-CTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAAGACTTAGCCCGGATATAAC
* * * * * *
37772318 GCTAGCACGAATGCCTTCGGGACTTAGCTCGGATATAGCACCAGCACGAATGCC
65 ACCAGCACGAATGCCTTCGAGACTTAGCCCAGATATAGCACCAACACGAATGCC
* * *
37772372 TTCGGAAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTTCAAGACTTAGCCCGGATATAAT
1 TGCGG-GCTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAAGACTTAGCCCGGATATAAC
**** **
37772435 ACCAGCACGAATGCCTTCGAGACTTAGCCCAGATATTTTTCCAACACTTA-GCC
65 ACCAGCACGAATGCCTTCGAGACTTAGCCCAGATATAGCACCAACACGAATGCC
* * *
37772488 TGCGGGCTTTAAGTCCGGATATATTTCCAGCA
1 TGCGGGCTTTAAGCCCGGATATAATACCAGCA
37772520 TAAAGCCTGC
Statistics
Matches: 122, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
115 1 0.01
116 9 0.07
117 105 0.86
118 2 0.02
119 5 0.04
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (118 bp):
TGCGGGCTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAAGACTTAGCCCGGATATAACA
CCAGCACGAATGCCTTCGAGACTTAGCCCAGATATAGCACCAACACGAATGCC
Found at i:37772527 original size:39 final size:39
Alignment explanation
Indices: 37772484--37772594 Score: 177
Period size: 39 Copynumber: 2.8 Consensus size: 39
37772474 TCCAACACTT
*
37772484 AGCCTGCGGGCTTTAAGTCCGGATATATTTCCAGCATAA
1 AGCCTGCGGACTTTAAGTCCGGATATATTTCCAGCATAA
*
37772523 AGCCTGCAGACTTTAAGTCCGGATATATTTCCAGCATAA
1 AGCCTGCGGACTTTAAGTCCGGATATATTTCCAGCATAA
* * *
37772562 AGCCTACGGACTTCAAGTCCGGATATTTTTCCA
1 AGCCTGCGGACTTTAAGTCCGGATATATTTCCA
37772595 ATACCATGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (39 bp):
AGCCTGCGGACTTTAAGTCCGGATATATTTCCAGCATAA
Found at i:37774826 original size:19 final size:18
Alignment explanation
Indices: 37774799--37774838 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
37774789 GTGTTTTTGT
*
37774799 CTAACTGGGCCAGGATGGG
1 CTAACTGGGCC-CGATGGG
*
37774818 CTAAGTGGGCCCGATGGG
1 CTAACTGGGCCCGATGGG
37774836 CTA
1 CTA
37774839 TTAGGCCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.20, C:0.23, G:0.40, T:0.17
Consensus pattern (18 bp):
CTAACTGGGCCCGATGGG
Found at i:37774960 original size:28 final size:29
Alignment explanation
Indices: 37774904--37774965 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 29
37774894 GAAAGCATGT
* * *
37774904 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCGAATCGGCC
*
37774933 ATATGAATGAGA-TTGGGCCGAGTCGGCC
1 ATATGAATGAGATTTGGGCCGAATCGGCC
37774961 ATATG
1 ATATG
37774966 CATGTATGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 18 0.62
29 11 0.38
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCGAATCGGCC
Found at i:37777830 original size:14 final size:14
Alignment explanation
Indices: 37777813--37777845 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
37777803 TGTTTTATTC
*
37777813 TATTTACTTTAATT
1 TATTTAATTTAATT
37777827 TATTTAATTTAATT
1 TATTTAATTTAATT
37777841 TATTT
1 TATTT
37777846 TTTTATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTTAATTTAATT
Found at i:37778482 original size:17 final size:17
Alignment explanation
Indices: 37778460--37778494 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
37778450 TATTGTTCTA
37778460 TAATTCAACTTT-ATCCT
1 TAATTCAA-TTTAATCCT
37778477 TAATTCAATTTAATCCT
1 TAATTCAATTTAATCCT
37778494 T
1 T
37778495 TTTTTTCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATTCAATTTAATCCT
Found at i:37781479 original size:29 final size:29
Alignment explanation
Indices: 37781437--37781561 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
37781427 GAAAGCCTGT
37781437 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
37781466 ATATGAATGTGATTCGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
37781495 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* ** * *
37781524 ATATGATTAAGA-TTGGGCCGAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
37781552 ATATGCATGT
1 ATATGAATGT
37781562 ATGTAGACTT
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 20 0.24
29 63 0.76
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:37784808 original size:39 final size:40
Alignment explanation
Indices: 37784707--37784930 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
37784697 TTGAATGATG
* *
37784707 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
37784746 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
37784787 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37784826 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37784865 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37784904 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
37784931 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
39 75 0.45
40 77 0.47
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:37784894 original size:79 final size:79
Alignment explanation
Indices: 37784707--37784930 Score: 294
Period size: 79 Copynumber: 2.8 Consensus size: 79
37784697 TTGAATGATG
* * *
37784707 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAG-TCCGAAGGCAT
*
37784770 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
37784787 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAGTCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGTCCGAAGGCATTT
*
37784850 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * * *
37784865 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGT-CCGAAGGCATTT
37784930 G
65 G
37784931 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
78 37 0.29
79 57 0.44
80 34 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:37784952 original size:79 final size:79
Alignment explanation
Indices: 37784707--37784963 Score: 233
Period size: 79 Copynumber: 3.3 Consensus size: 79
37784697 TTGAATGATG
* * * *
37784707 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-TCCGAAGGCA
** *
37784769 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
37784787 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGTCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGTCCGAAGGCATTTG
** *
37784851 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
37784865 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAGT-CCGAAGGCATT
*
37784929 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
37784945 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37784964 TACGTGATTT
Statistics
Matches: 154, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 37 0.24
79 69 0.45
80 46 0.30
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGTCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:37786371 original size:30 final size:29
Alignment explanation
Indices: 37786337--37786397 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
37786327 ATGAAACGGA
*
37786337 AGTTTTGGCACTAAGTGTGCGATTTAAACT
1 AGTTTTGGCACTAAGTGTACGATTT-AACT
37786367 AGTTTTGGCACTAAGTGTACGATTTAACT
1 AGTTTTGGCACTAAGTGTACGATTTAACT
37786396 AG
1 AG
37786398 CTTCAGCTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (29 bp):
AGTTTTGGCACTAAGTGTACGATTTAACT
Found at i:37787981 original size:29 final size:28
Alignment explanation
Indices: 37787949--37788016 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 28
37787939 ATAATATCAT
* *
37787949 TATAATTTAA-TTATCATAAACTCTTATTA
1 TATAATTTAATTTAT-AT-AACACTAATTA
* *
37787978 TATAAATTATATTTATATATCACTAATTA
1 TATAATTTA-ATTTATATAACACTAATTA
37788007 TATAATTTAA
1 TATAATTTAA
37788017 AACAAATAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
28 1 0.03
29 24 0.75
30 3 0.09
31 4 0.12
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (28 bp):
TATAATTTAATTTATATAACACTAATTA
Found at i:37791204 original size:29 final size:28
Alignment explanation
Indices: 37791162--37791252 Score: 112
Period size: 29 Copynumber: 3.2 Consensus size: 28
37791152 GAAAGCATGT
* *
37791162 ATATGAATGCGATTTGGGCCTAATCGGCC
1 ATATGAAT-AGATTTGGGCCTAATGGGCC
37791191 ATATGAATATGATTTGGGCCTAATGGGCC
1 ATATGAATA-GATTTGGGCCTAATGGGCC
* *
37791220 ATACGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAAT-AGATTTGGGCCTAATGGGCC
37791248 ATATG
1 ATATG
37791253 TATGTTTGTA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
28 19 0.35
29 35 0.64
30 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.27
Consensus pattern (28 bp):
ATATGAATAGATTTGGGCCTAATGGGCC
Found at i:37792418 original size:17 final size:18
Alignment explanation
Indices: 37792367--37792410 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
37792357 TTTTAAGAAG
37792367 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
37792385 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
37792403 GGTTTTCA
1 GGTTTTCA
37792411 TTAAAACACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:37803115 original size:28 final size:27
Alignment explanation
Indices: 37803059--37803144 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 27
37803049 GAAAGCATGT
* *
37803059 ATATGAATGCGATTTGGGCCTAATCGGCC
1 ATATGAAT-AGATTT-GGCCTAATGGGCC
37803088 ATATGAATATGATTTGGCCTAATGGGCC
1 ATATGAATA-GATTTGGCCTAATGGGCC
* * *
37803116 ATACGAATGAGATTGGGCCTAGTGGGCC
1 ATATGAAT-AGATTTGGCCTAATGGGCC
37803144 A
1 A
37803145 ATTGCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
28 36 0.72
29 14 0.28
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (27 bp):
ATATGAATAGATTTGGCCTAATGGGCC
Found at i:37809137 original size:39 final size:40
Alignment explanation
Indices: 37809036--37809259 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
37809026 TTGAATGATG
* *
37809036 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
37809075 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
37809116 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37809155 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37809194 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37809233 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
37809260 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
39 75 0.45
40 78 0.47
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:37809223 original size:79 final size:80
Alignment explanation
Indices: 37809036--37809259 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
37809026 TTGAATGATG
* * * *
37809036 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
*
37809099 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
37809116 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
*
37809178 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * *
37809194 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
37809259 G
66 G
37809260 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 36 0.28
79 56 0.44
80 35 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:37809281 original size:79 final size:79
Alignment explanation
Indices: 37809036--37809292 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
37809026 TTGAATGATG
* * * * *
37809036 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
37809098 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
37809116 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
37809180 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
37809194 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
37809258 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
37809274 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37809293 TATGTGATTT
Statistics
Matches: 153, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 36 0.24
79 68 0.44
80 47 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:37810700 original size:30 final size:29
Alignment explanation
Indices: 37810666--37810726 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
37810656 ATGAAACGGA
*
37810666 AGTTTTGGCACTAAGTGTGCGATTTAAACT
1 AGTTTTGGCACTAAGTGTACGATTT-AACT
37810696 AGTTTTGGCACTAAGTGTACGATTTAACT
1 AGTTTTGGCACTAAGTGTACGATTTAACT
37810725 AG
1 AG
37810727 CTTCAGCTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (29 bp):
AGTTTTGGCACTAAGTGTACGATTTAACT
Found at i:37811793 original size:29 final size:28
Alignment explanation
Indices: 37811761--37811828 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 28
37811751 ATAATATCAT
* *
37811761 TATAATTTAA-TTATCATAAACTCTTATTA
1 TATAATTTAATTTAT-AT-AACACTAATTA
* *
37811790 TATAAATTATATTTATATATCACTAATTA
1 TATAATTTA-ATTTATATAACACTAATTA
37811819 TATAATTTAA
1 TATAATTTAA
37811829 AACAAATAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
28 1 0.03
29 24 0.75
30 3 0.09
31 4 0.12
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (28 bp):
TATAATTTAATTTATATAACACTAATTA
Found at i:37815016 original size:29 final size:28
Alignment explanation
Indices: 37814974--37815064 Score: 112
Period size: 29 Copynumber: 3.2 Consensus size: 28
37814964 GAAAGCATGT
* *
37814974 ATATGAATGCGATTTGGGCCTAATCGGCC
1 ATATGAAT-AGATTTGGGCCTAATGGGCC
37815003 ATATGAATATGATTTGGGCCTAATGGGCC
1 ATATGAATA-GATTTGGGCCTAATGGGCC
* *
37815032 ATACGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAAT-AGATTTGGGCCTAATGGGCC
37815060 ATATG
1 ATATG
37815065 CATGTATGTA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
28 19 0.35
29 35 0.64
30 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.27
Consensus pattern (28 bp):
ATATGAATAGATTTGGGCCTAATGGGCC
Found at i:37824170 original size:28 final size:29
Alignment explanation
Indices: 37824056--37824180 Score: 180
Period size: 29 Copynumber: 4.3 Consensus size: 29
37824046 GAAAGTATGT
* *
37824056 ATATGAATGTGACTTGGGCCTAATCGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
37824085 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
37824114 ATACGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
37824143 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
37824171 ATATGCATGT
1 ATATGAATGT
37824181 ATGTAGACTT
Statistics
Matches: 86, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 22 0.26
29 64 0.74
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:37826332 original size:19 final size:17
Alignment explanation
Indices: 37826295--37826333 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
37826285 TTTTCTACTA
*
37826295 AATTTTTAATTTTATTT
1 AATTTTTAATTTAATTT
37826312 AATTATTTAATTTCAATTT
1 AATT-TTTAATTT-AATTT
37826331 AAT
1 AAT
37826334 GAATCATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 8 0.42
19 7 0.37
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
AATTTTTAATTTAATTT
Found at i:37837475 original size:14 final size:14
Alignment explanation
Indices: 37837456--37837482 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37837446 ATACTTGATT
37837456 TGTTCTTAATTATG
1 TGTTCTTAATTATG
37837470 TGTTCTTAATTAT
1 TGTTCTTAATTAT
37837483 TGCTTTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:37845874 original size:63 final size:64
Alignment explanation
Indices: 37845794--37845977 Score: 180
Period size: 67 Copynumber: 2.8 Consensus size: 64
37845784 ATATAGTTCG
* * *
37845794 GCTCTCTTGTAC-ACATGGTGA-ACACTCAGTATCACCCATGTGACCTAGCCA-ATTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGACACA-TCAGTATCACCCATGCGACCTAGCCACATATATCCCGT
37845856 A
64 A
* * * * * *
37845857 GCTCTCTTGTCTACATGGTGTC-CTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCC
1 GCTCTCTTGTCTACATGGTGACACATCA----GTATCACCCATGCGACCTAGCCACATATATCCC
37845921 GTA
62 GTA
*
37845924 GCTCTCTTGTCTACATGGTGTACACAT-AGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTG-ACACATCAGTATCACCCATGCGACCTAGCCACAT
37845978 CATAATGTCT
Statistics
Matches: 98, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
62 4 0.04
63 19 0.19
64 23 0.23
66 18 0.18
67 30 0.31
68 2 0.02
69 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGACACATCAGTATCACCCATGCGACCTAGCCACATATATCCCGTA
Found at i:37854578 original size:48 final size:48
Alignment explanation
Indices: 37854335--37854621 Score: 279
Period size: 48 Copynumber: 5.9 Consensus size: 48
37854325 ATACTAGGGT
* * * *
37854335 TATGTGAGCCAGTGTAAGACCACGTTCGGAACATGGCATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
* * * * * * *
37854383 TATGAGAGTTAGAGTAAGTCCATGTCTGGAACATGGCATCGGCCTTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
* * * * *
37854431 TATGTGAGCCAGTGTAAGACCCTATTTGAAACATGGCATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
* *
37854479 TATGAGAGTTAGTGTAAGACCATGTTTGGAACATTGCATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
* * * ***
37854527 TATGAGAGGTAGAGTAAGACCATTTTTGGAACATGGCATCGGCACCGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATC-G-ACATTTA
* * * * *
37854577 TGTGAGAGCCAGTGTATGACCAAT-TTTGGGACATGGCATCCACAT
1 TATGAGAGCTAGTGTAAGACC-ATGTTTGGAACATGGCATCGACAT
37854622 CTTACCATTT
Statistics
Matches: 190, Mismatches: 46, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
48 152 0.80
49 1 0.01
50 35 0.18
51 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
Found at i:37856413 original size:38 final size:38
Alignment explanation
Indices: 37856358--37856431 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
37856348 TGATCATATA
* ** *
37856358 GATACATATTTCATATTATTTTTCATTTCTTAGAATCG
1 GATACACATTTCATATTATGATTCATTTCTCAGAATCG
*
37856396 GATACACATTTCCTATTATGATTCATTTCTCAGAAT
1 GATACACATTTCATATTATGATTCATTTCTCAGAAT
37856432 GCACGATGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.46
Consensus pattern (38 bp):
GATACACATTTCATATTATGATTCATTTCTCAGAATCG
Found at i:37858600 original size:16 final size:17
Alignment explanation
Indices: 37858579--37858611 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
37858569 TTCTTTAAAA
37858579 CTGTTCATCAA-ACTTG
1 CTGTTCATCAACACTTG
37858595 CTGTTCATCAACACTTG
1 CTGTTCATCAACACTTG
37858612 TGCCGAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.36
Consensus pattern (17 bp):
CTGTTCATCAACACTTG
Found at i:37861008 original size:39 final size:39
Alignment explanation
Indices: 37860925--37861021 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
37860915 TGAAACCAAT
*
37860925 TACCAGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
* * * *
37860963 TACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAA
* *
37861002 TTCCAGCACGTAGCCTGCGG
1 TACCAGCACGAAGCCTGCGG
37861022 ACCTTAAGTC
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
38 14 0.29
39 35 0.71
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.20
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
Found at i:37861040 original size:78 final size:78
Alignment explanation
Indices: 37860958--37861109 Score: 191
Period size: 78 Copynumber: 1.9 Consensus size: 78
37860948 TTAAACCCGG
* * * * *
37860958 TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGCG
1 TATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCG
*
37861021 GACCTTAAGTCTGGA
64 GACCCTAAGTCTGGA
* * *
37861036 TATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
37861101 CCCTAAGTC
66 CCCTAAGTC
37861110 CGATATACAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
77 4 0.06
78 59 0.94
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCCTAAGTCTGGA
Found at i:37861045 original size:39 final size:39
Alignment explanation
Indices: 37860992--37861116 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
37860982 GGACTTTAGC
* * * *
37860992 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
37861031 CTGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
37861070 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
37861109 CC-GATATA
1 CCGGATATA
37861117 CATCACTGAA
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 6 0.08
39 74 0.93
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:37867570 original size:39 final size:39
Alignment explanation
Indices: 37867527--37867639 Score: 181
Period size: 39 Copynumber: 2.9 Consensus size: 39
37867517 GACATATTTT
* *
37867527 CAGCACGTAGCCTGCGGACCTTAAGTCCAGATATAATTC
1 CAGCACATAGCCTGCGGACCCTAAGTCCAGATATAATTC
**
37867566 CAGCACATAGCCTGCGGACCCTAAGTCTTGATATAATTC
1 CAGCACATAGCCTGCGGACCCTAAGTCCAGATATAATTC
*
37867605 CAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
1 CAGCACATAGCCTGCGGACCCTAAGTCCAGATATA
37867640 CATCACTGAA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (39 bp):
CAGCACATAGCCTGCGGACCCTAAGTCCAGATATAATTC
Found at i:37869394 original size:21 final size:22
Alignment explanation
Indices: 37869368--37869408 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
37869358 TTCTTAACAT
37869368 AGGGGC-ACACGCCCATGTGGG
1 AGGGGCAACACGCCCATGTGGG
37869389 AGGGGCAACACGCCCATGTG
1 AGGGGCAACACGCCCATGTG
37869409 ACATTTCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.22, C:0.29, G:0.39, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGGG
Found at i:37872295 original size:79 final size:80
Alignment explanation
Indices: 37872159--37872343 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
37872149 TTGAATGATG
* *
37872159 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
37872224 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
* * * **
37872239 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
37872301 TTGTGCGAGTTACT-AT
64 TTGTGCGAGATACTAAT
* * *
37872317 AACCGGGCTATGTCCCCAAGGCGTTTG
1 -TCCGGGCTAAGTCCCGAAGGC-TTTG
37872344 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.63
80 30 0.34
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTAAT
Found at i:37872350 original size:40 final size:40
Alignment explanation
Indices: 37872159--37872343 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
37872149 TTGAATGATG
* * * *
37872159 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37872199 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
37872239 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37872278 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
37872319 -CCGGGCTATGTCCCCAAGGCGTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37872344 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37872365 original size:79 final size:79
Alignment explanation
Indices: 37872212--37872376 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
37872202 GGACTAAGAT
* * * **
37872212 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCCAAGGCATTTGAACGAGTTACTAA
*
37872277 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
37872291 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCCAAGGCGTTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCCAAGGCATTTGAACGAGTTA-C
* *
37872354 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37872370 CCGAAGG
1 CCGAAGG
37872377 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCCAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:37880755 original size:99 final size:99
Alignment explanation
Indices: 37880460--37880756 Score: 504
Period size: 99 Copynumber: 3.0 Consensus size: 99
37880450 AAGCGATACA
* *
37880460 GATACTTATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATCGAT
1 GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
**
37880525 GCCTCTATCCCAGACAGGGTCTTACACGAAATCA
66 GCCTCTATCCCAGACAGGGTCTTACACGAAATTT
* *
37880559 GATACTCATAAACAAGTACAATGCCAACGTCCCAGATGTGATCTTACATGTAATTCAATATTGAT
1 GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
* *
37880624 GCCTCTGTCCCAGACAGGGTCTTACACAAAATTT
66 GCCTCTATCCCAGACAGGGTCTTACACGAAATTT
*
37880658 GATACTCATAAACAAGTACAATGCCAACGTCCCAAACGTGGTCTTACATGTAATTCAATATTGAT
1 GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
*
37880723 GCCTCTATCCCAGATAGGGTCTTACACGAAATTT
66 GCCTCTATCCCAGACAGGGTCTTACACGAAATTT
37880757 CAGATCGAAG
Statistics
Matches: 184, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 184 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.27
Consensus pattern (99 bp):
GATACTCATAAACAAGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATTCAATATTGAT
GCCTCTATCCCAGACAGGGTCTTACACGAAATTT
Found at i:37883918 original size:27 final size:27
Alignment explanation
Indices: 37883871--37884073 Score: 225
Period size: 27 Copynumber: 7.6 Consensus size: 27
37883861 ATATTGAGTC
* * * *
37883871 CGCACA-TCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37883897 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37883924 CGCACACTTAGTGCTACATAGTCAAAACT
1 CGCACACTTAGTGCTACATAGTC-AAA-T
** * *
37883953 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37883980 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37884007 CGCACA--TAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37884032 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37884059 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37884074 GTACAATTTA
Statistics
Matches: 152, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
25 20 0.13
26 7 0.05
27 99 0.65
28 5 0.03
29 21 0.14
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Done.